# Assembly name: bStrHab1_v1.p # Organism name: Strigops habroptila (Kakapo) # Isolate: Jane # Sex: female # Taxid: 2489341 # BioSample: SAMN09948751 # BioProject: PRJNA489135 # Submitter: Vertebrate Genomes Project # Date: 2019-01-18 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: RXXE01 # Assembly method: FALCON v. 5.1.1; FALCON unzip v. 1.0.2; scaff10X v. git 4.28.2018; Bionano Solve DLS v. 3.2.1; Salsa2 HiC v. 2.0; smrtanalysis Arrow polishing & gap filling v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; purge_haplotigs v. bit 7.10.2018; gE # Expected final version: no # Genome coverage: 76.1x # Sequencing technology: PacBio RSII; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics HiC # RefSeq category: Representative Genome # GenBank assembly accession: GCA_004027225.1 # Linked assembly: GCA_004011185.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_004027235.1 Primary Assembly ## GCA_004027245.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name scaffold_105_arrow_ctg1 assembled-molecule 1 Chromosome CM013761.1 <> na Primary Assembly 172115758 na scaffold_104_arrow_ctg1 assembled-molecule 2 Chromosome CM013762.1 <> na Primary Assembly 104142482 na scaffold_49_arrow_ctg1 assembled-molecule 3 Chromosome CM013764.1 <> na Primary Assembly 88151028 na scaffold_187_arrow_ctg1 assembled-molecule 4 Chromosome CM013765.1 <> na Primary Assembly 86460390 na scaffold_197_arrow_ctg1 assembled-molecule 5 Chromosome CM013766.1 <> na Primary Assembly 83147210 na scaffold_192_arrow_ctg1 assembled-molecule 6 Chromosome CM013767.1 <> na Primary Assembly 76401667 na scaffold_139_arrow_ctg1 assembled-molecule 7 Chromosome CM013768.1 <> na Primary Assembly 69915743 na scaffold_139_arrow_ctg1_1 assembled-molecule 8 Chromosome CM013769.1 <> na Primary Assembly 63755163 na scaffold_101_arrow_ctg1 assembled-molecule 9 Chromosome CM013770.1 <> na Primary Assembly 43987489 na scaffold_132_arrow_ctg1 assembled-molecule 10 Chromosome CM013771.1 <> na Primary Assembly 43764472 na scaffold_131_arrow_ctg1 assembled-molecule 11 Chromosome CM013772.1 <> na Primary Assembly 39187110 na scaffold_160_arrow_ctg1 assembled-molecule 12 Chromosome CM013774.1 <> na Primary Assembly 16476160 na scaffold_69_arrow_ctg1 assembled-molecule 13 Chromosome CM013775.1 <> na Primary Assembly 27433492 na scaffold_177_arrow_ctg1 assembled-molecule 14 Chromosome CM013776.1 <> na Primary Assembly 7441144 na scaffold_98_arrow_ctg1_1 assembled-molecule 15 Chromosome CM013777.1 <> na Primary Assembly 12884122 na scaffold_221_arrow_ctg1 assembled-molecule 16 Chromosome CM013778.1 <> na Primary Assembly 12307978 na scaffold_98_arrow_ctg1 assembled-molecule 17 Chromosome CM013779.1 <> na Primary Assembly 8419051 na scaffold_228_arrow_ctg1 assembled-molecule 18 Chromosome CM013780.1 <> na Primary Assembly 5789228 na scaffold_222_arrow_ctg1 assembled-molecule 19 Chromosome CM013781.1 <> na Primary Assembly 5645757 na scaffold_229_arrow_ctg1 assembled-molecule 20 Chromosome CM013782.1 <> na Primary Assembly 5492648 na scaffold_39_arrow_ctg1 assembled-molecule 21 Chromosome CM013783.1 <> na Primary Assembly 2785283 na scaffold_3_arrow_ctg1 assembled-molecule 22 Chromosome CM013784.1 <> na Primary Assembly 556942 na scaffold_89_arrow_ctg1 assembled-molecule 23 Chromosome CM013785.1 <> na Primary Assembly 378074 na scaffold_71_arrow_ctg1 assembled-molecule 24 Chromosome CM013786.1 <> na Primary Assembly 211696 na scaffold_45_arrow_ctg1 assembled-molecule W Chromosome CM013773.1 <> na Primary Assembly 35700789 na scaffold_91_arrow_ctg1 assembled-molecule Z Chromosome CM013763.1 <> na Primary Assembly 101254409 na Super_Scaffold_1 unlocalized-scaffold 2 Chromosome RXXE01000004.1 <> na Primary Assembly 18881121 na scaffold_120_arrow_ctg1 unlocalized-scaffold 3 Chromosome RXXE01000012.1 <> na Primary Assembly 931415 na scaffold_1_arrow_ctg1 unlocalized-scaffold 5 Chromosome RXXE01000052.1 <> na Primary Assembly 1724737 na Super_Scaffold_2 unlocalized-scaffold 12 Chromosome RXXE01000055.1 <> na Primary Assembly 11483721 na scaffold_114_arrow_ctg1 unlocalized-scaffold 14 Chromosome RXXE01000009.1 <> na Primary Assembly 6734548 na scaffold_226_arrow_ctg1 unlocalized-scaffold 14 Chromosome RXXE01000060.1 <> na Primary Assembly 2907026 na scaffold_100_arrow_ctg1 unplaced-scaffold na na RXXE01000001.1 <> na Primary Assembly 33736 na scaffold_102_arrow_ctg1 unplaced-scaffold na na RXXE01000003.1 <> na Primary Assembly 357906 na scaffold_106_arrow_ctg1 unplaced-scaffold na na RXXE01000007.1 <> na Primary Assembly 45507 na scaffold_112_arrow_ctg1 unplaced-scaffold na na RXXE01000008.1 <> na Primary Assembly 20747 na scaffold_116_arrow_ctg1 unplaced-scaffold na na RXXE01000010.1 <> na Primary Assembly 60270 na scaffold_119_arrow_ctg1 unplaced-scaffold na na RXXE01000011.1 <> na Primary Assembly 24535 na scaffold_122_arrow_ctg1 unplaced-scaffold na na RXXE01000013.1 <> na Primary Assembly 33252 na scaffold_125_arrow_ctg1 unplaced-scaffold na na RXXE01000014.1 <> na Primary Assembly 34148 na scaffold_126_arrow_ctg1 unplaced-scaffold na na RXXE01000015.1 <> na Primary Assembly 151271 na scaffold_127_arrow_ctg1 unplaced-scaffold na na RXXE01000016.1 <> na Primary Assembly 79880 na scaffold_12_arrow_ctg1 unplaced-scaffold na na RXXE01000017.1 <> na Primary Assembly 28315 na scaffold_137_arrow_ctg1 unplaced-scaffold na na RXXE01000020.1 <> na Primary Assembly 52918 na scaffold_138_arrow_ctg1 unplaced-scaffold na na RXXE01000021.1 <> na Primary Assembly 86693 na scaffold_140_arrow_ctg1 unplaced-scaffold na na RXXE01000024.1 <> na Primary Assembly 222505 na scaffold_141_arrow_ctg1 unplaced-scaffold na na RXXE01000025.1 <> na Primary Assembly 88076 na scaffold_143_arrow_ctg1 unplaced-scaffold na na RXXE01000026.1 <> na Primary Assembly 77094 na scaffold_146_arrow_ctg1 unplaced-scaffold na na RXXE01000027.1 <> na Primary Assembly 33863 na scaffold_150_arrow_ctg1 unplaced-scaffold na na RXXE01000028.1 <> na Primary Assembly 21488 na scaffold_152_arrow_ctg1 unplaced-scaffold na na RXXE01000029.1 <> na Primary Assembly 24155 na scaffold_155_arrow_ctg1 unplaced-scaffold na na RXXE01000030.1 <> na Primary Assembly 48637 na scaffold_156_arrow_ctg1 unplaced-scaffold na na RXXE01000031.1 <> na Primary Assembly 46904 na scaffold_159_arrow_ctg1 unplaced-scaffold na na RXXE01000032.1 <> na Primary Assembly 114670 na scaffold_165_arrow_ctg1 unplaced-scaffold na na RXXE01000034.1 <> na Primary Assembly 31560 na scaffold_16_arrow_ctg1 unplaced-scaffold na na RXXE01000035.1 <> na Primary Assembly 56214 na scaffold_173_arrow_ctg1 unplaced-scaffold na na RXXE01000036.1 <> na Primary Assembly 38872 na scaffold_174_arrow_ctg1 unplaced-scaffold na na RXXE01000037.1 <> na Primary Assembly 90314 na scaffold_175_arrow_ctg1 unplaced-scaffold na na RXXE01000038.1 <> na Primary Assembly 253776 na scaffold_176_arrow_ctg1 unplaced-scaffold na na RXXE01000039.1 <> na Primary Assembly 24179 na scaffold_179_arrow_ctg1 unplaced-scaffold na na RXXE01000041.1 <> na Primary Assembly 70586 na scaffold_184_arrow_ctg1 unplaced-scaffold na na RXXE01000042.1 <> na Primary Assembly 36894 na scaffold_18_arrow_ctg1 unplaced-scaffold na na RXXE01000044.1 <> na Primary Assembly 76117 na scaffold_190_arrow_ctg1 unplaced-scaffold na na RXXE01000045.1 <> na Primary Assembly 29937 na scaffold_194_arrow_ctg1 unplaced-scaffold na na RXXE01000047.1 <> na Primary Assembly 47232 na scaffold_197_arrow_ctg1_1 unplaced-scaffold na na RXXE01000049.1 <> na Primary Assembly 644727 na scaffold_199_arrow_ctg1 unplaced-scaffold na na RXXE01000050.1 <> na Primary Assembly 49887 na scaffold_19_arrow_ctg1 unplaced-scaffold na na RXXE01000051.1 <> na Primary Assembly 57529 na scaffold_207_arrow_ctg1 unplaced-scaffold na na RXXE01000053.1 <> na Primary Assembly 44814 na scaffold_208_arrow_ctg1 unplaced-scaffold na na RXXE01000054.1 <> na Primary Assembly 740477 na scaffold_21_arrow_ctg1 unplaced-scaffold na na RXXE01000056.1 <> na Primary Assembly 44271 na scaffold_223_arrow_ctg1 unplaced-scaffold na na RXXE01000059.1 <> na Primary Assembly 21581 na scaffold_25_arrow_ctg1 unplaced-scaffold na na RXXE01000063.1 <> na Primary Assembly 27098 na scaffold_28_arrow_ctg1 unplaced-scaffold na na RXXE01000064.1 <> na Primary Assembly 59057 na scaffold_30_arrow_ctg1 unplaced-scaffold na na RXXE01000065.1 <> na Primary Assembly 20789 na scaffold_34_arrow_ctg1 unplaced-scaffold na na RXXE01000066.1 <> na Primary Assembly 62886 na scaffold_41_arrow_ctg1 unplaced-scaffold na na RXXE01000069.1 <> na Primary Assembly 614760 na scaffold_42_arrow_ctg1 unplaced-scaffold na na RXXE01000070.1 <> na Primary Assembly 48461 na scaffold_43_arrow_ctg1 unplaced-scaffold na na RXXE01000071.1 <> na Primary Assembly 73844 na scaffold_47_arrow_ctg1 unplaced-scaffold na na RXXE01000073.1 <> na Primary Assembly 47485 na scaffold_54_arrow_ctg1 unplaced-scaffold na na RXXE01000075.1 <> na Primary Assembly 22520 na scaffold_61_arrow_ctg1 unplaced-scaffold na na RXXE01000076.1 <> na Primary Assembly 54083 na scaffold_62_arrow_ctg1 unplaced-scaffold na na RXXE01000077.1 <> na Primary Assembly 35551 na scaffold_63_arrow_ctg1 unplaced-scaffold na na RXXE01000078.1 <> na Primary Assembly 151516 na scaffold_65_arrow_ctg1 unplaced-scaffold na na RXXE01000079.1 <> na Primary Assembly 684923 na scaffold_66_arrow_ctg1 unplaced-scaffold na na RXXE01000080.1 <> na Primary Assembly 348875 na scaffold_6_arrow_ctg1 unplaced-scaffold na na RXXE01000082.1 <> na Primary Assembly 32151 na scaffold_72_arrow_ctg1 unplaced-scaffold na na RXXE01000084.1 <> na Primary Assembly 286977 na scaffold_77_arrow_ctg1 unplaced-scaffold na na RXXE01000085.1 <> na Primary Assembly 93137 na scaffold_83_arrow_ctg1 unplaced-scaffold na na RXXE01000086.1 <> na Primary Assembly 229176 na scaffold_84_arrow_ctg1 unplaced-scaffold na na RXXE01000087.1 <> na Primary Assembly 784362 na scaffold_86_arrow_ctg1 unplaced-scaffold na na RXXE01000088.1 <> na Primary Assembly 234768 na scaffold_88_arrow_ctg1 unplaced-scaffold na na RXXE01000089.1 <> na Primary Assembly 460413 na scaffold_92_arrow_ctg1 unplaced-scaffold na na RXXE01000092.1 <> na Primary Assembly 35802 na scaffold_93_arrow_ctg1 unplaced-scaffold na na RXXE01000093.1 <> na Primary Assembly 49631 na scaffold_96_arrow_ctg1 unplaced-scaffold na na RXXE01000094.1 <> na Primary Assembly 164872 na scaffold_97_arrow_ctg1 unplaced-scaffold na na RXXE01000095.1 <> na Primary Assembly 241945 na scaffold_99_arrow_ctg1 unplaced-scaffold na na RXXE01000098.1 <> na Primary Assembly 28210 na scaffold_9_arrow_ctg1 unplaced-scaffold na na RXXE01000099.1 <> na Primary Assembly 215291 na bStrHab1_MT assembled-molecule MT Mitochondrion CM013787.1 <> na non-nuclear 17830 na