Rhinolophus ferrumequinum
(Photo courtesy of CC BY-NC-SA 2.0 Ján Svetlík (flickr))

Common name: greater horseshoe bat
Taxonomic name: Rhinolophus ferrumequinum, taxonomy ID: 59479
Sequencing/Assembly provider ID: Vertebrate Genomes Project
Vertebrate Genomes Project information: Rhinolophus ferrumequinum
Assembly date: 17 May 2019
Assembly type: haploid
Assembly level: Chromosome
Biosample: SAMN09948510
Assembly accession ID: GCA_004115265.2
Assembly FTP location: GCA/004/115/265/GCA_004115265.2_mRhiFer1_v1.p
Total assembly nucleotides: 2,075,785,400
Assembly contig count: 135
N50 size: 88,025,743

Download files for this assembly hub:
To use the data from this assembly for a local hub instance at your institution, download these data as indicated by these instructions.
See also: track hub help documentation.

To download this assembly data, use this rsync command:

  rsync -a -P rsync://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCA_004115265.2_mRhiFer1_v1.p/ ./GCA_004115265.2_mRhiFer1_v1.p/

  which creates the local directory: ./GCA_004115265.2_mRhiFer1_v1.p/

or this wget command:

  wget --timestamping -m -nH -x --cut-dirs=4 -e robots=off -np -k \
    --reject "index.html*" -P "GCA_004115265.2_mRhiFer1_v1.p" \
       https://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCA_004115265.2_mRhiFer1_v1.p/

  which creates a local directory: ./GCA_004115265.2_mRhiFer1_v1.p/

There is an included GCA_004115265.2_mRhiFer1_v1.p.genomes.txt file in that download data to use for your local track hub instance.
You will need to add a hub.txt file to point to this genomes.txt file.
Something like:

hub myLocalHub
shortLabel myLocalHub
longLabel genomes from Vertebrate Genomes Project assemblies
genomesFile GCA_004115265.2_mRhiFer1_v1.p.genomes.txt
email yourEmail@yourdomain.edu
descriptionUrl html/GCA_004115265.2_mRhiFer1_v1.p.description.html

The html/GCA_004115265.2_mRhiFer1_v1.p.description.html page is information for your users to describe this assembly. This WEB page with these instructions is an instance of html/GCA_004115265.2_mRhiFer1_v1.p.description.html file.

To operate a blat server on this assembly, in the directory where you have the GCA_004115265.2_mRhiFer1_v1.p.2bit file:

gfServer -log=GCA_004115265.2_mRhiFer1_v1.p.gfServer.trans.log -ipLog -canStop start \
    yourserver.domain.edu 76543 -trans -mask GCA_004115265.2_mRhiFer1_v1.p.2bit &
gfServer -log=GCA_004115265.2_mRhiFer1_v1.p.gfServer.log -ipLog -canStop start \
    yourserver.domain.edu 76542 -stepSize=5 GCA_004115265.2_mRhiFer1_v1.p.2bit &

Adjust the port numbers 76543 76542 and the yourserver.domain.edu for your local circumstances.
Enter the following specifications in your genomes.txt file:

transBlat yourserver.domain.edu 76543
blat yourserver.domain.edu 76542