# Assembly name: fArcCen1 # Organism name: Archocentrus centrarchus (flier cichlid) # Isolate: MPI-CPG fArcCen1 # Sex: male # Taxid: 63155 # BioSample: SAMN09948522 # BioProject: PRJNA489129 # Submitter: Vertebrate Genomes Project # Date: 2019-07-24 # Assembly type: haploid # Release type: major # Assembly level: Chromosome # Genome representation: full # WGS project: STFV01 # Assembly method: FALCON v. 5.1.1; FALCON-Unzip v. 1.0.2; scaff10x v. 2.1; Bionano Solve DLS v. 3.2.1; Salsa2 v. 2.0; Arrow v. 5.1.0.26412; longranger align v. 2.2.2; freebayes v. 1.2.0; gEVAL manual curation v. 2019-02-08; VGP standard assembly pipeline v. 1.0 # Expected final version: no # Genome coverage: 76.0x # Sequencing technology: PacBio Sequel I; 10X Genomics linked reads; Bionano Genomics DLS; Arima Genomics Hi-C # RefSeq category: Representative Genome # GenBank assembly accession: GCA_007364275.1 # Linked assembly: GCA_007364235.1 (alternate pseudohaplotype of diploid) # ## Assembly-Units: ## GenBank Unit Accession RefSeq Unit Accession Assembly-Unit name ## GCA_007364325.1 Primary Assembly ## GCA_007364335.1 non-nuclear # # Ordered by chromosome/plasmid; the chromosomes/plasmids are followed by # unlocalized scaffolds. # Unplaced scaffolds are listed at the end. # RefSeq is equal or derived from GenBank object. # # Sequence-Name Sequence-Role Assigned-Molecule Assigned-Molecule-Location/Type GenBank-Accn Relationship RefSeq-Accn Assembly-Unit Sequence-Length UCSC-style-name Super_Scaffold_6 assembled-molecule 1 Chromosome CM017272.1 <> na Primary Assembly 40720952 na Super_Scaffold_5 assembled-molecule 2 Chromosome CM017273.1 <> na Primary Assembly 31460851 na Super_Scaffold_19 assembled-molecule 3 Chromosome CM017274.1 <> na Primary Assembly 36298665 na Super_Scaffold_12 assembled-molecule 4 Chromosome CM017275.1 <> na Primary Assembly 38523138 na Super_Scaffold_16 assembled-molecule 5 Chromosome CM017276.1 <> na Primary Assembly 36312066 na Super_Scaffold_18 assembled-molecule 6 Chromosome CM017277.1 <> na Primary Assembly 36044076 na Super_Scaffold_13 assembled-molecule 7 Chromosome CM017278.1 <> na Primary Assembly 37817259 na scaffold_18_ctg1 assembled-molecule 8 Chromosome CM017279.1 <> na Primary Assembly 30379552 na Super_Scaffold_7 assembled-molecule 9 Chromosome CM017280.1 <> na Primary Assembly 28334081 na Super_Scaffold_11 assembled-molecule 10 Chromosome CM017281.1 <> na Primary Assembly 39882982 na Super_Scaffold_2 assembled-molecule 11 Chromosome CM017282.1 <> na Primary Assembly 36498288 na Super_Scaffold_1 assembled-molecule 12 Chromosome CM017283.1 <> na Primary Assembly 26466047 na Super_Scaffold_10 assembled-molecule 13 Chromosome CM017284.1 <> na Primary Assembly 43489282 na Super_Scaffold_9 assembled-molecule 14 Chromosome CM017285.1 <> na Primary Assembly 38701125 na scaffold_17_ctg1 assembled-molecule 15 Chromosome CM017286.1 <> na Primary Assembly 30423438 na scaffold_5_ctg1 assembled-molecule 16 Chromosome CM017287.1 <> na Primary Assembly 38360014 na Super_Scaffold_14 assembled-molecule 17 Chromosome CM017288.1 <> na Primary Assembly 35571081 na scaffold_14_ctg1 assembled-molecule 19 Chromosome CM017289.1 <> na Primary Assembly 31014359 na Super_Scaffold_4 assembled-molecule 20 Chromosome CM017290.1 <> na Primary Assembly 33110875 na Super_Scaffold_15 assembled-molecule 21 Chromosome CM017291.1 <> na Primary Assembly 35590001 na Super_Scaffold_17 assembled-molecule 22 Chromosome CM017292.1 <> na Primary Assembly 29294280 na scaffold_21_ctg1 assembled-molecule 23 Chromosome CM017293.1 <> na Primary Assembly 24620982 na Super_Scaffold_3 assembled-molecule 24 Chromosome CM017294.1 <> na Primary Assembly 35997201 na Super_Scaffold_8 unlocalized-scaffold 18 Chromosome STFV01000124.1 <> na Primary Assembly 23904144 na scaffold_23_ctg1 unlocalized-scaffold 18 Chromosome STFV01000125.1 <> na Primary Assembly 9527829 na scaffold_100_ctg1 unplaced-scaffold na na STFV01000001.1 <> na Primary Assembly 303200 na scaffold_101_ctg1 unplaced-scaffold na na STFV01000002.1 <> na Primary Assembly 302460 na scaffold_103_ctg1 unplaced-scaffold na na STFV01000003.1 <> na Primary Assembly 285703 na scaffold_104_ctg1 unplaced-scaffold na na STFV01000004.1 <> na Primary Assembly 276054 na scaffold_105_ctg1 unplaced-scaffold na na STFV01000005.1 <> na Primary Assembly 275516 na scaffold_106_ctg1 unplaced-scaffold na na STFV01000006.1 <> na Primary Assembly 111929 na scaffold_106_ctg1_1 unplaced-scaffold na na STFV01000007.1 <> na Primary Assembly 91039 na scaffold_107_ctg1 unplaced-scaffold na na STFV01000008.1 <> na Primary Assembly 254560 na scaffold_108_ctg1 unplaced-scaffold na na STFV01000009.1 <> na Primary Assembly 232438 na scaffold_109_ctg1 unplaced-scaffold na na STFV01000010.1 <> na Primary Assembly 202891 na scaffold_110_ctg1 unplaced-scaffold na na STFV01000012.1 <> na Primary Assembly 196982 na scaffold_111_ctg1 unplaced-scaffold na na STFV01000013.1 <> na Primary Assembly 191795 na scaffold_112_ctg1 unplaced-scaffold na na STFV01000014.1 <> na Primary Assembly 171041 na scaffold_113_ctg1 unplaced-scaffold na na STFV01000015.1 <> na Primary Assembly 169548 na scaffold_114_ctg1 unplaced-scaffold na na STFV01000016.1 <> na Primary Assembly 154310 na scaffold_115_ctg1 unplaced-scaffold na na STFV01000017.1 <> na Primary Assembly 138783 na scaffold_116_ctg1 unplaced-scaffold na na STFV01000018.1 <> na Primary Assembly 130324 na scaffold_117_ctg1 unplaced-scaffold na na STFV01000019.1 <> na Primary Assembly 118363 na scaffold_118_ctg1 unplaced-scaffold na na STFV01000020.1 <> na Primary Assembly 116923 na scaffold_119_ctg1 unplaced-scaffold na na STFV01000021.1 <> na Primary Assembly 113144 na scaffold_120_ctg1 unplaced-scaffold na na STFV01000023.1 <> na Primary Assembly 108949 na scaffold_121_ctg1 unplaced-scaffold na na STFV01000024.1 <> na Primary Assembly 100577 na scaffold_122_ctg1 unplaced-scaffold na na STFV01000025.1 <> na Primary Assembly 98502 na scaffold_123_ctg1 unplaced-scaffold na na STFV01000026.1 <> na Primary Assembly 95711 na scaffold_125_ctg1 unplaced-scaffold na na STFV01000027.1 <> na Primary Assembly 84496 na scaffold_126_ctg1 unplaced-scaffold na na STFV01000028.1 <> na Primary Assembly 83999 na scaffold_127_ctg1 unplaced-scaffold na na STFV01000029.1 <> na Primary Assembly 83184 na scaffold_128_ctg1 unplaced-scaffold na na STFV01000030.1 <> na Primary Assembly 82076 na scaffold_129_ctg1 unplaced-scaffold na na STFV01000031.1 <> na Primary Assembly 80522 na scaffold_130_ctg1 unplaced-scaffold na na STFV01000033.1 <> na Primary Assembly 79637 na scaffold_131_ctg1 unplaced-scaffold na na STFV01000034.1 <> na Primary Assembly 77654 na scaffold_132_ctg1 unplaced-scaffold na na STFV01000035.1 <> na Primary Assembly 74268 na scaffold_133_ctg1 unplaced-scaffold na na STFV01000036.1 <> na Primary Assembly 72408 na scaffold_134_ctg1 unplaced-scaffold na na STFV01000037.1 <> na Primary Assembly 63807 na scaffold_135_ctg1 unplaced-scaffold na na STFV01000038.1 <> na Primary Assembly 57599 na scaffold_136_ctg1 unplaced-scaffold na na STFV01000039.1 <> na Primary Assembly 56315 na scaffold_137_ctg1 unplaced-scaffold na na STFV01000040.1 <> na Primary Assembly 55740 na scaffold_138_ctg1 unplaced-scaffold na na STFV01000041.1 <> na Primary Assembly 52385 na scaffold_139_ctg1 unplaced-scaffold na na STFV01000042.1 <> na Primary Assembly 51909 na scaffold_140_ctg1 unplaced-scaffold na na STFV01000044.1 <> na Primary Assembly 51752 na scaffold_141_ctg1 unplaced-scaffold na na STFV01000045.1 <> na Primary Assembly 51414 na scaffold_142_ctg1 unplaced-scaffold na na STFV01000046.1 <> na Primary Assembly 50192 na scaffold_143_ctg1 unplaced-scaffold na na STFV01000047.1 <> na Primary Assembly 48967 na scaffold_144_ctg1 unplaced-scaffold na na STFV01000048.1 <> na Primary Assembly 44015 na scaffold_145_ctg1 unplaced-scaffold na na STFV01000049.1 <> na Primary Assembly 43324 na scaffold_146_ctg1 unplaced-scaffold na na STFV01000050.1 <> na Primary Assembly 42540 na scaffold_147_ctg1 unplaced-scaffold na na STFV01000051.1 <> na Primary Assembly 42449 na scaffold_148_ctg1 unplaced-scaffold na na STFV01000052.1 <> na Primary Assembly 42249 na scaffold_149_ctg1 unplaced-scaffold na na STFV01000053.1 <> na Primary Assembly 41812 na scaffold_150_ctg1 unplaced-scaffold na na STFV01000055.1 <> na Primary Assembly 40317 na scaffold_151_ctg1 unplaced-scaffold na na STFV01000056.1 <> na Primary Assembly 40245 na scaffold_152_ctg1 unplaced-scaffold na na STFV01000057.1 <> na Primary Assembly 39539 na scaffold_153_ctg1 unplaced-scaffold na na STFV01000058.1 <> na Primary Assembly 38114 na scaffold_154_ctg1 unplaced-scaffold na na STFV01000059.1 <> na Primary Assembly 37549 na scaffold_155_ctg1 unplaced-scaffold na na STFV01000060.1 <> na Primary Assembly 36968 na scaffold_156_ctg1 unplaced-scaffold na na STFV01000061.1 <> na Primary Assembly 36603 na scaffold_157_ctg1 unplaced-scaffold na na STFV01000062.1 <> na Primary Assembly 36450 na scaffold_158_ctg1 unplaced-scaffold na na STFV01000063.1 <> na Primary Assembly 35896 na scaffold_159_ctg1 unplaced-scaffold na na STFV01000064.1 <> na Primary Assembly 35120 na scaffold_160_ctg1 unplaced-scaffold na na STFV01000066.1 <> na Primary Assembly 34552 na scaffold_161_ctg1 unplaced-scaffold na na STFV01000067.1 <> na Primary Assembly 33653 na scaffold_162_ctg1 unplaced-scaffold na na STFV01000068.1 <> na Primary Assembly 33557 na scaffold_163_ctg1 unplaced-scaffold na na STFV01000069.1 <> na Primary Assembly 33226 na scaffold_164_ctg1 unplaced-scaffold na na STFV01000070.1 <> na Primary Assembly 32757 na scaffold_165_ctg1 unplaced-scaffold na na STFV01000071.1 <> na Primary Assembly 32544 na scaffold_166_ctg1 unplaced-scaffold na na STFV01000072.1 <> na Primary Assembly 32192 na scaffold_167_ctg1 unplaced-scaffold na na STFV01000073.1 <> na Primary Assembly 31857 na scaffold_168_ctg1 unplaced-scaffold na na STFV01000074.1 <> na Primary Assembly 30776 na scaffold_169_ctg1 unplaced-scaffold na na STFV01000075.1 <> na Primary Assembly 30456 na scaffold_170_ctg1 unplaced-scaffold na na STFV01000077.1 <> na Primary Assembly 30332 na scaffold_171_ctg1 unplaced-scaffold na na STFV01000078.1 <> na Primary Assembly 29406 na scaffold_172_ctg1 unplaced-scaffold na na STFV01000079.1 <> na Primary Assembly 29085 na scaffold_173_ctg1 unplaced-scaffold na na STFV01000080.1 <> na Primary Assembly 28954 na scaffold_174_ctg1 unplaced-scaffold na na STFV01000081.1 <> na Primary Assembly 28889 na scaffold_175_ctg1 unplaced-scaffold na na STFV01000082.1 <> na Primary Assembly 28822 na scaffold_176_ctg1 unplaced-scaffold na na STFV01000083.1 <> na Primary Assembly 27701 na scaffold_177_ctg1 unplaced-scaffold na na STFV01000084.1 <> na Primary Assembly 27214 na scaffold_178_ctg1 unplaced-scaffold na na STFV01000085.1 <> na Primary Assembly 27016 na scaffold_179_ctg1 unplaced-scaffold na na STFV01000086.1 <> na Primary Assembly 27003 na scaffold_180_ctg1 unplaced-scaffold na na STFV01000088.1 <> na Primary Assembly 26868 na scaffold_181_ctg1 unplaced-scaffold na na STFV01000089.1 <> na Primary Assembly 26782 na scaffold_182_ctg1 unplaced-scaffold na na STFV01000090.1 <> na Primary Assembly 26554 na scaffold_183_ctg1 unplaced-scaffold na na STFV01000091.1 <> na Primary Assembly 26051 na scaffold_184_ctg1 unplaced-scaffold na na STFV01000092.1 <> na Primary Assembly 25873 na scaffold_185_ctg1 unplaced-scaffold na na STFV01000093.1 <> na Primary Assembly 25792 na scaffold_186_ctg1 unplaced-scaffold na na STFV01000094.1 <> na Primary Assembly 25748 na scaffold_187_ctg1 unplaced-scaffold na na STFV01000095.1 <> na Primary Assembly 25434 na scaffold_188_ctg1 unplaced-scaffold na na STFV01000096.1 <> na Primary Assembly 25074 na scaffold_189_ctg1 unplaced-scaffold na na STFV01000097.1 <> na Primary Assembly 24728 na scaffold_190_ctg1 unplaced-scaffold na na STFV01000099.1 <> na Primary Assembly 23538 na scaffold_191_ctg1 unplaced-scaffold na na STFV01000100.1 <> na Primary Assembly 23379 na scaffold_192_ctg1 unplaced-scaffold na na STFV01000101.1 <> na Primary Assembly 23352 na scaffold_193_ctg1 unplaced-scaffold na na STFV01000102.1 <> na Primary Assembly 22969 na scaffold_194_ctg1 unplaced-scaffold na na STFV01000103.1 <> na Primary Assembly 22668 na scaffold_195_ctg1 unplaced-scaffold na na STFV01000104.1 <> na Primary Assembly 22353 na scaffold_196_ctg1 unplaced-scaffold na na STFV01000105.1 <> na Primary Assembly 22160 na scaffold_197_ctg1 unplaced-scaffold na na STFV01000106.1 <> na Primary Assembly 22153 na scaffold_198_ctg1 unplaced-scaffold na na STFV01000107.1 <> na Primary Assembly 21743 na scaffold_199_ctg1 unplaced-scaffold na na STFV01000108.1 <> na Primary Assembly 21229 na scaffold_19_ctg1 unplaced-scaffold na na STFV01000110.1 <> na Primary Assembly 171797 na scaffold_200_ctg1 unplaced-scaffold na na STFV01000114.1 <> na Primary Assembly 20853 na scaffold_201_ctg1 unplaced-scaffold na na STFV01000115.1 <> na Primary Assembly 20689 na scaffold_202_ctg1 unplaced-scaffold na na STFV01000116.1 <> na Primary Assembly 20686 na scaffold_203_ctg1 unplaced-scaffold na na STFV01000117.1 <> na Primary Assembly 20549 na scaffold_204_ctg1 unplaced-scaffold na na STFV01000118.1 <> na Primary Assembly 18423 na scaffold_205_ctg1 unplaced-scaffold na na STFV01000119.1 <> na Primary Assembly 8531 na scaffold_206_ctg1 unplaced-scaffold na na STFV01000120.1 <> na Primary Assembly 6452 na scaffold_22_ctg1_1 unplaced-scaffold na na STFV01000123.1 <> na Primary Assembly 255656 na scaffold_24_ctg1 unplaced-scaffold na na STFV01000126.1 <> na Primary Assembly 7335497 na scaffold_24_ctg1_1 unplaced-scaffold na na STFV01000127.1 <> na Primary Assembly 1700590 na scaffold_26_ctg1 unplaced-scaffold na na STFV01000128.1 <> na Primary Assembly 7662993 na scaffold_27_ctg1 unplaced-scaffold na na STFV01000129.1 <> na Primary Assembly 2481182 na scaffold_29_ctg1 unplaced-scaffold na na STFV01000130.1 <> na Primary Assembly 4482480 na scaffold_30_ctg1 unplaced-scaffold na na STFV01000132.1 <> na Primary Assembly 4397597 na scaffold_32_ctg1 unplaced-scaffold na na STFV01000133.1 <> na Primary Assembly 4079816 na scaffold_33_ctg1 unplaced-scaffold na na STFV01000134.1 <> na Primary Assembly 4077885 na scaffold_35_ctg1 unplaced-scaffold na na STFV01000135.1 <> na Primary Assembly 3936766 na scaffold_36_ctg1 unplaced-scaffold na na STFV01000136.1 <> na Primary Assembly 3645730 na scaffold_37_ctg1 unplaced-scaffold na na STFV01000137.1 <> na Primary Assembly 3629853 na scaffold_38_ctg1 unplaced-scaffold na na STFV01000138.1 <> na Primary Assembly 3505598 na scaffold_40_ctg1 unplaced-scaffold na na STFV01000140.1 <> na Primary Assembly 3328364 na scaffold_41_ctg1 unplaced-scaffold na na STFV01000141.1 <> na Primary Assembly 3195786 na scaffold_42_ctg1 unplaced-scaffold na na STFV01000142.1 <> na Primary Assembly 2618668 na scaffold_43_ctg1 unplaced-scaffold na na STFV01000143.1 <> na Primary Assembly 2563168 na scaffold_44_ctg1 unplaced-scaffold na na STFV01000144.1 <> na Primary Assembly 2606559 na scaffold_45_ctg1 unplaced-scaffold na na STFV01000145.1 <> na Primary Assembly 2565212 na scaffold_48_ctg1 unplaced-scaffold na na STFV01000146.1 <> na Primary Assembly 2356724 na scaffold_50_ctg1 unplaced-scaffold na na STFV01000148.1 <> na Primary Assembly 2241961 na scaffold_52_ctg1 unplaced-scaffold na na STFV01000149.1 <> na Primary Assembly 1758304 na scaffold_53_ctg1 unplaced-scaffold na na STFV01000150.1 <> na Primary Assembly 1052877 na scaffold_54_ctg1 unplaced-scaffold na na STFV01000151.1 <> na Primary Assembly 2085245 na scaffold_55_ctg1 unplaced-scaffold na na STFV01000152.1 <> na Primary Assembly 1960195 na scaffold_57_ctg1 unplaced-scaffold na na STFV01000153.1 <> na Primary Assembly 1668435 na scaffold_58_ctg1 unplaced-scaffold na na STFV01000154.1 <> na Primary Assembly 1421100 na scaffold_63_ctg1 unplaced-scaffold na na STFV01000156.1 <> na Primary Assembly 1169118 na scaffold_64_ctg1 unplaced-scaffold na na STFV01000157.1 <> na Primary Assembly 984380 na scaffold_65_ctg1 unplaced-scaffold na na STFV01000158.1 <> na Primary Assembly 94572 na scaffold_66_ctg1 unplaced-scaffold na na STFV01000159.1 <> na Primary Assembly 955343 na scaffold_68_ctg1 unplaced-scaffold na na STFV01000160.1 <> na Primary Assembly 943370 na scaffold_69_ctg1 unplaced-scaffold na na STFV01000161.1 <> na Primary Assembly 86195 na scaffold_71_ctg1 unplaced-scaffold na na STFV01000163.1 <> na Primary Assembly 585319 na scaffold_72_ctg1 unplaced-scaffold na na STFV01000164.1 <> na Primary Assembly 856184 na scaffold_74_ctg1 unplaced-scaffold na na STFV01000165.1 <> na Primary Assembly 293330 na scaffold_76_ctg1 unplaced-scaffold na na STFV01000166.1 <> na Primary Assembly 687226 na scaffold_79_ctg1 unplaced-scaffold na na STFV01000167.1 <> na Primary Assembly 556980 na scaffold_80_ctg1 unplaced-scaffold na na STFV01000169.1 <> na Primary Assembly 509420 na scaffold_82_ctg1 unplaced-scaffold na na STFV01000170.1 <> na Primary Assembly 507002 na scaffold_83_ctg1 unplaced-scaffold na na STFV01000171.1 <> na Primary Assembly 497412 na scaffold_84_ctg1 unplaced-scaffold na na STFV01000172.1 <> na Primary Assembly 496329 na scaffold_85_ctg1 unplaced-scaffold na na STFV01000173.1 <> na Primary Assembly 413666 na scaffold_86_ctg1 unplaced-scaffold na na STFV01000174.1 <> na Primary Assembly 322558 na scaffold_87_ctg1 unplaced-scaffold na na STFV01000175.1 <> na Primary Assembly 444529 na scaffold_89_ctg1 unplaced-scaffold na na STFV01000176.1 <> na Primary Assembly 423968 na scaffold_90_ctg1 unplaced-scaffold na na STFV01000178.1 <> na Primary Assembly 418961 na scaffold_91_ctg1 unplaced-scaffold na na STFV01000179.1 <> na Primary Assembly 414583 na scaffold_92_ctg1 unplaced-scaffold na na STFV01000180.1 <> na Primary Assembly 388223 na scaffold_93_ctg1 unplaced-scaffold na na STFV01000181.1 <> na Primary Assembly 364931 na scaffold_94_ctg1 unplaced-scaffold na na STFV01000182.1 <> na Primary Assembly 358055 na scaffold_95_ctg1 unplaced-scaffold na na STFV01000183.1 <> na Primary Assembly 352552 na scaffold_96_ctg1 unplaced-scaffold na na STFV01000184.1 <> na Primary Assembly 346757 na scaffold_97_ctg1 unplaced-scaffold na na STFV01000185.1 <> na Primary Assembly 331851 na scaffold_98_ctg1 unplaced-scaffold na na STFV01000186.1 <> na Primary Assembly 329678 na scaffold_99_ctg1 unplaced-scaffold na na STFV01000187.1 <> na Primary Assembly 326385 na fArcCen1_MT assembled-molecule MT Mitochondrion CM017295.1 <> na non-nuclear 16663 na