Lynx canadensis
(Photo courtesy of CC BY 2.0 Keith Williams (flickr))

Common name: Canada lynx
Taxonomic name: Lynx canadensis, taxonomy ID: 61383
Sequencing/Assembly provider ID: Vertebrate Genomes Project
Vertebrate Genomes Project information: Lynx canadensis
Assembly date: 25 Jul 2019
Assembly type: haploid
Assembly level: Chromosome
Biosample: SAMN09948483
Assembly accession ID: GCA_007474595.1
Assembly FTP location: GCA/007/474/595/GCA_007474595.1_mLynCan4_v1.p
Total assembly nucleotides: 2,408,900,816
Assembly contig count: 67
N50 size: 146,106,016

Download files for this assembly hub:
To use the data from this assembly for a local hub instance at your institution, download these data as indicated by these instructions.
See also: track hub help documentation.

To download this assembly data, use this rsync command:

  rsync -a -P rsync://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCA_007474595.1_mLynCan4_v1.p/ ./GCA_007474595.1_mLynCan4_v1.p/

  which creates the local directory: ./GCA_007474595.1_mLynCan4_v1.p/

or this wget command:

  wget --timestamping -m -nH -x --cut-dirs=4 -e robots=off -np -k \
    --reject "index.html*" -P "GCA_007474595.1_mLynCan4_v1.p" \
       https://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCA_007474595.1_mLynCan4_v1.p/

  which creates a local directory: ./GCA_007474595.1_mLynCan4_v1.p/

There is an included GCA_007474595.1_mLynCan4_v1.p.genomes.txt file in that download data to use for your local track hub instance.
You will need to add a hub.txt file to point to this genomes.txt file.
Something like:

hub myLocalHub
shortLabel myLocalHub
longLabel genomes from Vertebrate Genomes Project assemblies
genomesFile GCA_007474595.1_mLynCan4_v1.p.genomes.txt
email yourEmail@yourdomain.edu
descriptionUrl html/GCA_007474595.1_mLynCan4_v1.p.description.html

The html/GCA_007474595.1_mLynCan4_v1.p.description.html page is information for your users to describe this assembly. This WEB page with these instructions is an instance of html/GCA_007474595.1_mLynCan4_v1.p.description.html file.

To operate a blat server on this assembly, in the directory where you have the GCA_007474595.1_mLynCan4_v1.p.2bit file:

gfServer -log=GCA_007474595.1_mLynCan4_v1.p.gfServer.trans.log -ipLog -canStop start \
    yourserver.domain.edu 76543 -trans -mask GCA_007474595.1_mLynCan4_v1.p.2bit &
gfServer -log=GCA_007474595.1_mLynCan4_v1.p.gfServer.log -ipLog -canStop start \
    yourserver.domain.edu 76542 -stepSize=5 GCA_007474595.1_mLynCan4_v1.p.2bit &

Adjust the port numbers 76543 76542 and the yourserver.domain.edu for your local circumstances.
Enter the following specifications in your genomes.txt file:

transBlat yourserver.domain.edu 76543
blat yourserver.domain.edu 76542