Rhinatrema bivittatum
(Photo courtesy of Apple)

Common name: two-lined caecilian
Taxonomic name: Rhinatrema bivittatum, taxonomy ID: 194408
Sequencing/Assembly provider ID: SC
Vertebrate Genomes Project information: Rhinatrema bivittatum
Assembly date: 02 Jun 2019
Assembly type: haploid
Assembly level: Chromosome
Biosample: SAMEA104387956
Assembly accession ID: GCA_901001135.1
Assembly FTP location: GCF/901/001/135/GCF_901001135.1_aRhiBiv1.1
Total assembly nucleotides: 5,319,239,201
Assembly contig count: 1,330
N50 size: 486,875,112

Download files for this assembly hub:
To use the data from this assembly for a local hub instance at your institution, download these data as indicated by these instructions.
See also: track hub help documentation.

To download this assembly data, use this rsync command:

  rsync -a -P rsync://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCF_901001135.1_aRhiBiv1.1/ ./GCF_901001135.1_aRhiBiv1.1/

  which creates the local directory: ./GCF_901001135.1_aRhiBiv1.1/

or this wget command:

  wget --timestamping -m -nH -x --cut-dirs=4 -e robots=off -np -k \
    --reject "index.html*" -P "GCF_901001135.1_aRhiBiv1.1" \
       https://hgdownload.soe.ucsc.edu/hubs/VGP/genomes/GCF_901001135.1_aRhiBiv1.1/

  which creates a local directory: ./GCF_901001135.1_aRhiBiv1.1/

There is an included GCF_901001135.1_aRhiBiv1.1.genomes.txt file in that download data to use for your local track hub instance.
You will need to add a hub.txt file to point to this genomes.txt file.
Something like:

hub myLocalHub
shortLabel myLocalHub
longLabel genomes from Vertebrate Genomes Project assemblies
genomesFile GCF_901001135.1_aRhiBiv1.1.genomes.txt
email yourEmail@yourdomain.edu
descriptionUrl html/GCF_901001135.1_aRhiBiv1.1.description.html

The html/GCF_901001135.1_aRhiBiv1.1.description.html page is information for your users to describe this assembly. This WEB page with these instructions is an instance of html/GCF_901001135.1_aRhiBiv1.1.description.html file.

To operate a blat server on this assembly, in the directory where you have the GCF_901001135.1_aRhiBiv1.1.2bit file:

gfServer -log=GCF_901001135.1_aRhiBiv1.1.gfServer.trans.log -ipLog -canStop start \
    yourserver.domain.edu 76543 -trans -mask GCF_901001135.1_aRhiBiv1.1.2bit &
gfServer -log=GCF_901001135.1_aRhiBiv1.1.gfServer.log -ipLog -canStop start \
    yourserver.domain.edu 76542 -stepSize=5 GCF_901001135.1_aRhiBiv1.1.2bit &

Adjust the port numbers 76543 76542 and the yourserver.domain.edu for your local circumstances.
Enter the following specifications in your genomes.txt file:

transBlat yourserver.domain.edu 76543
blat yourserver.domain.edu 76542