This track shows a multiple alignment of 577 vertebrate genomes made with Cactus. This alignment represents the largest and most taxonomically diverse vertebrate alignment to date, spanning mammals, birds, fishes, reptiles, and amphibians from the Vertebrate Genomes Project (VGP) and related sequencing initiatives.
All alignments were performed using the Cactus toolkit, which uses a reference-free approach to construct genome alignments and ancestral reconstructions. Unlike traditional progressive alignment methods, Cactus simultaneously considers all input genomes to minimize reference bias and improve alignment accuracy across diverse evolutionary distances.
The alignment includes:
This broad phylogenetic sampling enables comparative genomics studies across the vertebrate tree of life, supporting research in evolution, conservation, and functional genomics.
Downloads for data in this track are available from the directories:
Pairwise alignments of each species to the reference genome are displayed as a grayscale density plot (in pack mode) or as a wiggle (in full mode) that indicates alignment quality. In dense display mode, alignments are shown in grayscale using darker values to indicate higher levels of coverage.
Checkboxes on the track configuration page allow selection of the species to include in the pairwise display. Note that excluding species from the pairwise display does not alter the underlying alignment data.
To view detailed information about the alignments at a specific position, zoom the display in to 30,000 or fewer bases, then click on the alignment.
The Display chains between alignments configuration option enables display of gaps between alignment blocks in the pairwise alignments in a manner similar to the Chain track display. Missing sequence in any assembly is highlighted in the track display by regions of yellow when zoomed out and by Ns when displayed at base level. The following conventions are used:
Discontinuities in the genomic context (chromosome, scaffold or region) of the aligned DNA in the aligning species are shown as follows:
When zoomed-in to the base-level display, the track shows the base composition of each alignment. The numbers and symbols on the Gaps line indicate the lengths of gaps in the reference sequence at those alignment positions relative to the longest non-reference sequence. If there is sufficient space in the display, the size of the gap is shown. If the space is insufficient and the gap size is a multiple of 3, a "*" is displayed; other gap sizes are indicated by "+".
The VGP 577-way alignment was created using the Cactus multiple genome alignment tool. Cactus employs a reference-free progressive alignment strategy that constructs a series of pairwise alignments organized according to a guide tree, then uses these to build progressively larger alignments up to the full multiple alignment.
Unlike traditional progressive alignment approaches, Cactus performs an additional "bar" phase that identifies and resolves alignment conflicts by considering all genomes simultaneously. This helps reduce reference bias and improves accuracy across diverse evolutionary distances present in vertebrate genomes.
The input genomes represent high-quality chromosome-level assemblies primarily from the Vertebrate Genomes Project, with additional assemblies from NCBI RefSeq and GenBank that meet quality standards for whole-genome alignment.
count accession
(link to browser)common
namescientific name VGP grouping 001 GCF_016700215.2 white leghorn layer chicken Gallus gallus
reference speciesBirds Other 002 GCA_951394365.1 Western capercaillie Tetrao urogallus Birds Other 003 GCF_023343835.1 rock ptarmigan Lagopus muta Birds Other 004 GCA_039878825.1 king quail Coturnix chinensis Birds Other 005 GCA_965151615.1 tundra swan Cygnus columbianus Birds Other 006 GCA_965231335.1 Canada goose Branta canadensis Birds Other 007 GCA_964211835.1 domestic goose Anser anser Birds Other 008 GCF_040182565.1 swan goose Anser cygnoides Birds Other 009 GCF_009769625.2 mute swan Cygnus olor Birds Other 010 GCA_964034855.1 pink-footed goose Anser brachyrhynchus Birds Other 011 GCA_037962945.1 king vulture Sarcoramphus papa Birds Landbirds 012 GCA_963989345.1 long-tailed duck Clangula hyemalis Birds Other 013 GCA_017639555.1 Maguari stork Ciconia maguari Birds Waterbirds 014 GCA_964059595.1 common goldeneye Bucephala clangula Birds Other 015 GCA_028022735.1 bearded vulture Gypaetus barbatus Birds Landbirds 016 GCF_900496995.4 European golden eagle Aquila chrysaetos Birds Landbirds 017 GCF_026419915.1 harpy eagle Harpia harpyja Birds Landbirds 018 GCA_045345515.1 crested eagle Morphnus guianensis Birds Landbirds 019 GCA_027474245.1 Humboldt penguin Spheniscus humboldti Birds Waterbirds 020 GCA_009819775.1 American flamingo Phoenicopterus ruber Birds Other 021 GCA_036873955.1 Brazilian merganser Mergus octosetaceus Birds Other 022 GCA_964211825.1 common pochard Aythya ferina Birds Other 023 GCA_964195595.2 Cory's shearwater Calonectris borealis Birds Waterbirds 024 GCA_964035555.1 red-crested pochard Netta rufina Birds Other 025 GCF_009819795.1 tufted duck Aythya fuligula Birds Other 026 GCA_964188345.1 mallard Anas platyrhynchos Birds Other 027 GCA_965140915.1 greater scaup Aythya marila Birds Other 028 GCA_964188355.1 common buzzard Buteo buteo Birds Landbirds 029 GCF_963932015.1 northern pintail Anas acuta Birds Other 030 GCA_020745775.1 plumbeous ibis Theristicus caerulescens Birds Waterbirds 031 GCA_965183815.1 Eurasian spoonbill Platalea leucorodia Birds Waterbirds 032 GCF_947461875.1 white-tailed eagle Haliaeetus albicilla Birds Landbirds 033 GCF_030936135.1 red-throated Loon Gavia stellata Birds Waterbirds 034 GCF_929443795.1 Northern goshawk Accipiter gentilis Birds Landbirds 035 GCA_031468815.1 Northern gannet Morus bassanus Birds Waterbirds 036 GCA_030463565.1 dalmatian pelican Pelecanus crispus Birds Waterbirds 037 GCA_031877795.1 tawny owl Strix aluco Birds Landbirds 038 GCA_009819825.1 red-legged seriema Cariama cristata Birds Landbirds 039 GCF_028858705.1 whooping crane Grus americana Birds Waterbirds 040 GCA_964106855.1 Eurasian crane Grus grus Birds Waterbirds 041 GCA_011004875.1 grey crowned-crane Balearica regulorum gibbericeps Birds Waterbirds 042 GCF_028500815.1 black-legged kittiwake Rissa tridactyla Birds Waterbirds 043 GCA_965140245.1 little owl Athene noctua Birds Landbirds 044 GCA_964199755.1 yellow-legged gull Larus michahellis Birds Waterbirds 045 GCA_963932225.1 lesser black-backed gull Larus fuscus Birds Waterbirds 046 GCA_964417175.1 herring gull Larus argentatus Birds Waterbirds 047 GCF_963924245.1 black-headed gull Chroicocephalus ridibundus Birds Waterbirds 048 GCA_009819605.1 common tern Sterna hirundo Birds Waterbirds 049 GCA_008658365.1 razorbill Alca Torda Birds Waterbirds 050 GCA_965231255.1 Northern Lapwing Vanellus vanellus Birds Waterbirds 051 GCF_013368605.1 great potoo Nyctibius grandis Birds Other 052 GCF_963921805.1 great cormorant Phalacrocorax carbo Birds Waterbirds 053 GCA_949628215.1 European shag Gulosus aristotelis Birds Waterbirds 054 GCA_964289735.1 red-billed tropicbird Phaethon aethereus Birds Waterbirds 055 GCA_034619465.1 cuckoo-roller Leptosomus discolor Birds Landbirds 056 GCF_023634155.1 peregrine falcon Falco peregrinus Birds Landbirds 057 GCA_030867145.1 hoatzin Opisthocomus hoazin Birds Waterbirds 058 GCF_023634085.1 saker falcon Falco cherrug Birds Landbirds 059 GCF_015220075.1 gyrfalcon Falco rusticolus Birds Landbirds 060 GCF_017639655.2 lesser kestrel Falco naumanni Birds Landbirds 061 GCA_963210335.1 Mauritius kestrel Falco punctatus Birds Landbirds 062 GCF_023638135.1 Lanner falcon Falco biarmicus Birds Landbirds 063 GCA_009769465.1 red-crested turaco Tauraco erythrolophus Birds Other 064 GCA_964106895.1 Eurasian curlew Numenius arquata Birds Waterbirds 065 GCA_036417535.1 MacQueen's bustard Chlamydotis macqueenii Birds Other 066 GCA_907165065.1 Eurasian nightjar Caprimulgus europaeus Birds Other 067 GCA_009769525.1 yellow-throated sandgrouse Pterocles gutturalis Birds Other 068 GCF_036013445.1 Nicobar pigeon Caloenas nicobarica Birds Other 069 GCA_027574665.1 Kagu Rhynochetos jubatus Birds Waterbirds 070 GCF_040807025.1 common ostrich Struthio camelus australis Birds Other 071 GCF_036417845.1 North Island brown kiwi Apteryx mantelli Birds Other 072 GCA_028020825.1 tawny frogmouth Podargus strigoides Birds Other 073 GCA_017639485.1 European golden plover Pluvialis apricaria Birds Waterbirds 074 GCA_039906565.1 mountain owlet-nightjar Aegotheles albertisi Birds Other 075 GCF_036370855.1 emu Dromaius novaehollandiae Birds Other 076 GCF_004027225.2 kakapo Strigops habroptilus Birds Landbirds 077 GCA_009769605.1 Abyssinian ground hornbill Bucorvus abyssinicus Birds Landbirds 078 GCF_036013475.1 rock dove Columba livia Birds Other 079 GCA_964273445.1 Eurasian collared-dove Streptopelia decaocto Birds Other 080 GCF_037038585.1 band-tailed pigeon Patagioenas fasciata Birds Other 081 GCA_963082525.1 pink pigeon Nesoenas mayeri Birds Other 082 GCA_020800305.1 takahe Porphyrio hochstetteri Birds Waterbirds 083 GCA_901699155.2 European turtle dove Streptopelia turtur Birds Other 084 GCA_964237585.1 common moorhen Gallinula chloropus Birds Waterbirds 085 GCA_020746105.1 surucua trogon Trogon surrucura Birds Landbirds 086 GCF_017976375.1 common cuckoo Cuculus canorus Birds Other 087 GCA_963264785.1 Mauritius parakeet Psittacula echo Birds Landbirds 088 GCA_020745705.1 whiskered treeswift Hemiprocne comata Birds Other 089 GCA_028858755.1 blue-and-gold macaw Ara ararauna Birds Landbirds 090 GCA_045345405.1 golden parakeet Guaruba guaruba Birds Landbirds 091 GCA_039720435.1 yellow-crowned amazon Amazona ochrocephala Birds Landbirds 092 GCF_037157495.1 swift parrot Lathamus discolor Birds Landbirds 093 GCA_009819595.1 carmine bee-eater Merops nubicus Birds Landbirds 094 GCF_028858725.1 speckled mousebird Colius striatus Birds Landbirds 095 GCF_028389875.1 lesser rhea Rhea pennata Birds Other 096 GCF_012275295.1 budgerigar Melopsittacus undulatus Birds Landbirds 097 GCF_020740795.1 common swift Apus apus Birds Other 098 GCF_036250125.1 white-crowned manakin Dixiphia pipra Birds Landbirds 099 GCF_009829145.1 lanced-tailed manakin Chiroxiphia lanceolata Birds Landbirds 100 GCA_014706295.1 Obi paradise-crow Lycocorax pyrrhopterus obiensis Birds Landbirds 101 GCA_016904835.1 rifleman Acanthisitta chloris Birds Other 102 GCA_046129655.1 blue jay Cyanocitta cristata Birds Landbirds 103 GCF_020740725.1 Hawaiian crow Corvus hawaiiensis Birds Landbirds 104 GCA_965178545.1 Western jackdaw Coloeus monedula Birds Landbirds 105 GCF_009650955.1 New Caledonian crow Corvus moneduloides Birds Landbirds 106 GCA_045364795.1 Xingu scale-backed antbird Willisornis vidua Birds Landbirds 107 GCA_023637945.2 long-tailed hermit Phaethornis superciliosus Birds Other 108 GCF_036169615.1 tourmaline sunangel Heliangelus exortis Birds Other 109 GCF_026979565.1 village indigobird Vidua chalybeata Birds Landbirds 110 GCF_003957555.1 Anna's hummingbird Calypte anna Birds Other 111 GCA_027559615.1 common myna Acridotheres tristis Birds Landbirds 112 GCF_030490865.1 black-capped chickadee Poecile atricapillus Birds Landbirds 113 GCF_036417665.1 house sparrow Passer domesticus Birds Landbirds 114 GCF_963662255.1 white-throated dipper Cinclus cinclus Birds Landbirds 115 GCF_020745825.1 red-winged blackbird Agelaius phoeniceus Birds Landbirds 116 GCF_027477595.1 house finch Haemorhous mexicanus Birds Landbirds 117 GCA_965231275.1 silver-eye Zosterops lateralis Birds Landbirds 118 GCA_963513975.1 common chaffinch Fringilla coelebs Birds Landbirds 119 GCA_014839755.1 garden warbler Sylvia borin Birds Landbirds 120 GCF_009819655.1 European blackcap Sylvia atricapilla Birds Landbirds 121 GCA_048771995.1 zebra finch Taeniopygia guttata Birds Landbirds 122 GCA_036010785.1 seaside sparrow Ammospiza maritima Birds Landbirds 123 GCF_027887145.1 saltmarsh sparrow Ammodramus caudacutus Birds Landbirds 124 GCA_031885435.1 Savannah sparrow Passerculus sandwichensis Birds Landbirds 125 GCF_027579445.1 Nelson's sparrow Ammospiza nelsoni Birds Landbirds 126 GCF_009819885.2 Swainson's thrush Catharus ustulatus Birds Landbirds 127 GCA_047830755.1 white-throated sparrow Zonotrichia albicollis Birds Landbirds 128 GCF_015227805.1 barn swallow Hirundo rustica Birds Landbirds 129 GCF_028018845.1 swamp sparrow Melospiza georgiana Birds Landbirds 130 GCA_046129695.1 Bengalese finch Lonchura striata domestica Birds Landbirds 131 GCA_009764595.1 common yellowthroat Geothlypis trichas Birds Landbirds 132 GCF_029582105.1 eastern black-eared wheatear Oenanthe melanoleuca Birds Landbirds 133 GCA_903797595.2 European robin Erithacus rubecula Birds Landbirds 134 GCF_035770615.1 song sparrow Melospiza melodia Birds Landbirds 135 GCF_014839835.1 downy woodpecker Dryobates pubescens Birds Landbirds 136 GCA_047922985.1 elegant crested tinamou Eudromia elegans Birds Other 137 GCF_015220805.1 red-fronted tinkerbird Pogoniulus pusillus Birds Landbirds 138 GCA_040894355.2 Bellinger river turtle Myuchelys georgesi Reptiles 139 GCF_028017835.1 European pond turtle Emys orbicularis Reptiles 140 GCF_015237465.2 green sea turtle Chelonia mydas Reptiles 141 GCA_965152275.1 Australian flatback sea turtle Natator depressus Reptiles 142 GCA_965152235.1 Hawksbill sea turtle Eretmochelys imbricata Reptiles 143 GCA_965140235.1 loggerhead sea turtle Caretta caretta Reptiles 144 GCA_965140295.1 Pacific ridley Lepidochelys olivacea Reptiles 145 GCA_965140285.1 Kemp's ridley sea turtle Lepidochelys kempii Reptiles 146 GCF_025201925.1 Mexican gopher tortoise Gopherus flavomarginatus Reptiles 147 GCF_007399415.2 Goode's Thornscrub Tortoise Gopherus evgoodei Reptiles 148 GCF_009764565.3 leatherback sea turtle Dermochelys coriacea Reptiles 149 GCA_030020295.1 Indian gharial Gavialis gangeticus Reptiles 150 GCF_030867095.1 American alligator Alligator mississippiensis Reptiles 151 GCA_045781085.1 Indian roofed turtle Pangshura tecta Reptiles 152 GCA_033349115.1 Suwannee snapping turtle Macrochelys suwanniensis Reptiles 153 GCA_045364815.1 arrau turtle Podocnemis expansa Reptiles 154 GCA_032164245.1 eastern musk turtle Sternotherus odoratus Reptiles 155 GCA_033958435.1 pig-nosed turtle Carettochelys insculpta Reptiles 156 GCF_027887155.1 diamondback terrapin Malaclemys terrapin Reptiles 157 GCA_021292165.1 Chinese crocodile lizard Shinisaurus crocodilurus Reptiles 158 GCA_035046505.1 blue-tongue skink Tiliqua scincoides Reptiles 159 GCF_030035675.1 Florida worm lizard Rhineura floridana Reptiles 160 GCF_028583425.1 leopard gecko Eublepharis macularius Reptiles 161 GCF_023053635.1 Southern alligator lizard Elgaria multicarinata webbii Reptiles 162 GCA_029215775.1 San Diegan legless lizard Anniella stebbinsi Reptiles 163 GCF_029931775.1 European leaf-toed gecko Euleptes europaea Reptiles 164 GCA_964188175.1 Italian wall lizard Podarcis siculus Reptiles 165 GCA_964270895.1 Filfola wall lizard Podarcis filfolensis Reptiles 166 GCA_964188315.1 common wall lizard Podarcis muralis Reptiles 167 GCF_027172205.1 Aeolian wall lizard Podarcis raffonei Reptiles 168 GCA_965153285.1 Tyrrhenian wall lizard Podarcis tiliguerta Reptiles 169 GCA_964106915.2 Skyros wall lizard Podarcis gaigeae Reptiles 170 GCA_965112155.1 Columbretes wall lizard Podarcis liolepis Reptiles 171 GCA_964106645.2 Ibiza wall lizard Podarcis pityusensis Reptiles 172 GCA_965113315.1 Andalusian wall lizard Podarcis vaucheri Reptiles 173 GCA_964234715.1 Dalmatian wall lizard Podarcis melisellensis Reptiles 174 GCA_951804945.1 Cretan wall lizard Podarcis cretensis Reptiles 175 GCF_009819535.1 sand lizard Lacerta agilis Reptiles 176 GCA_964188305.1 Bocage's wall lizard Podarcis bocagei Reptiles 177 GCF_963506605.1 European common lizard Zootoca vivipara Reptiles 178 GCA_964252035.1 Aegean wall lizard Podarcis erhardii Reptiles 179 GCA_030412105.1 stout iguana Cyclura pinguis Reptiles 180 GCA_046126795.1 Smith's blind skink Dibamus smithi Reptiles 181 GCF_037176765.1 brown anole Anolis sagrei Reptiles 182 GCA_030867105.1 olive python Liasis olivaceus Reptiles 183 GCF_035149785.1 viper boa Candoia aspera Reptiles 184 GCA_023333525.2 Western whiptail stejnegeri Aspidoscelis tigris stejnegeri Reptiles 185 GCA_030440675.1 panther chameleon Furcifer pardalis Reptiles 186 GCA_047715975.1 lizards B.pumilum Bradypodion pumilum Reptiles 187 GCA_024294585.1 snub-nosed viber Vipera latastei Reptiles 188 GCA_964194415.1 adder Vipera berus Reptiles 189 GCA_947247035.1 Hungarian meadow viper Vipera ursinii Reptiles 190 GCA_964273705.1 barred grass snake Natrix helvetica Reptiles 191 GCF_009769535.1 Western terrestrial garter snake Thamnophis elegans Reptiles 192 GCF_031021105.1 royal ground snake Erythrolamprus reginae Reptiles 193 GCF_015852505.1 short-beaked echidna Tachyglossus aculeatus Mammals Other 194 GCF_004115215.2 platypus Ornithorhynchus anatinus Mammals Other 195 GCF_019393635.1 monito del montes Dromiciops gliroides Mammals Other 196 GCF_027887165.1 gray short-tailed opossum Monodelphis domestica Mammals Other 197 GCA_003287225.2 koala Phascolarctos cinereus Mammals Other 198 GCF_011100635.1 common brushtail possum Trichosurus vulpecula Mammals Other 199 GCF_028372415.1 Tammar wallaby Macropus eugenii Mammals Other 200 GCF_020826845.1 Southern black rhinoceros Diceros bicornis minor Mammals Laurasiatheria 201 GCA_031878705.1 Malayan tapir Tapirus indicus Mammals Laurasiatheria 202 GCA_036426135.1 Arabian horse Equus caballus Mammals Laurasiatheria 203 GCA_046562895.1 Amazon manatee Trichechus inunguis Mammals Other 204 GCA_030035585.1 dugong Dugong dugon Mammals Other 205 GCA_048126345.1 marsupial mole Notoryctes typhlops Mammals Other 206 GCF_027409185.1 Philippine flying lemur Cynocephalus volans Mammals Euarchontoglires 207 GCF_024166365.1 Asian elephant Elephas maximus indicus Mammals Other 208 GCF_030014295.1 African elephant Loxodonta africana Mammals Other 209 GCF_028885655.2 Sumatran orangutan Pongo abelii Mammals Euarchontoglires 210 GCF_028885625.2 Bornean orangutan Pongo pygmaeus Mammals Euarchontoglires 211 GCF_015220235.1 Linnaeus's two-toed sloth Choloepus didactylus Mammals Other 212 GCF_029281585.2 gorilla Gorilla gorilla Mammals Euarchontoglires 213 GCA_037893015.1 greater bilby Macrotis lagotis Mammals Other 214 GCF_028858775.2 chimpanzee Pan troglodytes Mammals Euarchontoglires 215 GCF_029289425.2 bonobo Pan paniscus Mammals Euarchontoglires 216 hs1 human Homo sapiens Mammals Euarchontoglires 217 hg38 human Homo sapiens Mammals Euarchontoglires 218 GCF_037993035.1 crab-eating macaque Macaca fascicularis Mammals Euarchontoglires 219 GCF_028878055.3 siamang gibbon Symphalangus syndactylus Mammals Euarchontoglires 220 GCF_028564815.1 North Atlantic right whale Eubalaena glacialis Mammals Laurasiatheria 221 GCA_048593235.1 fat-tailed dunnart Sminthopsis crassicaudata Mammals Other 222 GCF_028021215.1 gray whale Eschrichtius robustus Mammals Laurasiatheria 223 GCA_041834305.1 humpback whale Megaptera novaeangliae Mammals Laurasiatheria 224 GCF_030028045.1 common hippopotamus Hippopotamus amphibius Mammals Laurasiatheria 225 GCA_043880545.1 Greater mouse-tailed bat Rhinopoma microphyllum Mammals Laurasiatheria 226 GCF_949987535.1 common minke whale Balaenoptera acutorostrata Mammals Laurasiatheria 227 GCF_030445035.2 nine-banded armadillo Dasypus novemcinctus Mammals Other 228 GCF_028023285.1 Rice's whale Balaenoptera ricei Mammals Laurasiatheria 229 GCA_964656455.1 grey seal Halichoerus grypus Mammals Laurasiatheria 230 GCA_965194825.1 finback whale Balaenoptera physalus Mammals Laurasiatheria 231 GCA_965194805.1 sei whale Balaenoptera borealis Mammals Laurasiatheria 232 GCF_009762305.2 California sea lion Zalophus californianus Mammals Laurasiatheria 233 GCF_009873245.2 blue whale Balaenoptera musculus Mammals Laurasiatheria 234 GCF_028018385.1 clouded leopard Neofelis nebulosa Mammals Laurasiatheria 235 GCF_043159975.1 pig-tailed macaque Macaca nemestrina Mammals Euarchontoglires 236 GCA_023851605.1 Southern tamandua Tamandua tetradactyla Mammals Other 237 GCF_004115265.2 greater horseshoe bat Rhinolophus ferrumequinum Mammals Laurasiatheria 238 GCA_049354715.1 common marmoset Callithrix jacchus Mammals Euarchontoglires 239 GCA_048565385.1 Bolivian squirrel monkey Saimiri boliviensis Mammals Euarchontoglires 240 GCF_937001465.1 killer whale Orcinus orca Mammals Laurasiatheria 241 GCA_005190385.3 narwhal Monodon monoceros Mammals Laurasiatheria 242 GCA_043728065.1 intermediate horseshoe bat Rhinolophus affinis Mammals Laurasiatheria 243 GCA_905319855.2 gray wolf Canis lupus Mammals Laurasiatheria 244 GCA_964270905.1 Atlantic white-sided dolphin Lagenorhynchus acutus Mammals Laurasiatheria 245 GCF_011100685.1 dog Canis lupus familiaris Mammals Laurasiatheria 246 GCA_040955705.1 African hunting dog Lycaon pictus Mammals Laurasiatheria 247 GCA_036417435.1 Amazon river dolphin Inia geoffrensis Mammals Laurasiatheria 248 GCF_039906515.1 false killer whale Pseudorca crassidens Mammals Laurasiatheria 249 GCA_964341445.1 True's beaked whale Mesoplodon mirus Mammals Laurasiatheria 250 GCA_964165515.1 Sowerby's beaked whale Mesoplodon bidens Mammals Laurasiatheria 251 GCA_964374135.1 Risso's dolphin Grampus griseus Mammals Laurasiatheria 252 GCA_949752795.1 North Atlantic bottlenose whale Hyperoodon ampullatus Mammals Laurasiatheria 253 GCF_949774975.1 white-beaked dolphin Lagenorhynchus albirostris Mammals Laurasiatheria 254 GCF_025265405.1 Blainville's beaked whale Mesoplodon densirostris Mammals Laurasiatheria 255 GCA_031876335.1 intermediate roundleaf bat Hipposideros larvatus Mammals Laurasiatheria 256 GCF_949987515.2 saddleback dolphin Delphinus delphis Mammals Laurasiatheria 257 GCF_963924675.1 harbor porpoise Phocoena phocoena Mammals Laurasiatheria 258 GCF_008692025.1 vaquita Phocoena sinus Mammals Laurasiatheria 259 GCF_011762595.1 common bottlenose dolphin Tursiops truncatus Mammals Laurasiatheria 260 GCA_048593285.1 tiger quoll Dasyurus maculatus Mammals Other 261 GCF_007474595.2 Canada lynx Lynx canadensis Mammals Laurasiatheria 262 GCA_963455335.1 European pine marten Martes martes Mammals Laurasiatheria 263 GCF_048164855.1 Mexican gray wolf Canis lupus Mammals Laurasiatheria 264 GCA_048593225.1 Tasmanian devil Sarcophilus harrisii Mammals Other 265 GCF_963455315.2 long-finned pilot whale Globicephala melas Mammals Laurasiatheria 266 GCA_951394435.1 striped dolphin Stenella coeruleoalba Mammals Laurasiatheria 267 GCA_964106825.2 red fox Vulpes vulpes Mammals Laurasiatheria 268 GCF_026419965.1 pygmy sperm whale Kogia breviceps Mammals Laurasiatheria 269 GCA_964194185.1 lesser horseshoe bat Rhinolophus hipposideros Mammals Laurasiatheria 270 GCF_030020395.1 Chinese pangolin Manis pentadactyla Mammals Laurasiatheria 271 GCF_922984935.1 European badger Meles meles Mammals Laurasiatheria 272 GCA_964106545.1 American mink Neogale vison Mammals Laurasiatheria 273 GCF_009829155.1 stout Mustela erminea Mammals Laurasiatheria 274 GCF_902655055.1 Eurasian otter Lutra lutra Mammals Laurasiatheria 275 GCF_030435805.1 European mink Mustela lutreola Mammals Laurasiatheria 276 GCA_048338725.1 pig Sus scrofa Mammals Laurasiatheria 277 GCA_043748575.1 Northern woolly horseshoe bat Rhinolophus perniger lanosus Mammals Laurasiatheria 278 GCA_043727835.1 Stoliczka's trident bat Aselliscus stoliczkanus Mammals Laurasiatheria 279 GCF_036321535.1 Dromedary camel Camelus dromedarius Mammals Laurasiatheria 280 GCA_043880425.1 Yong hoi sen's woolly horseshoe bat Rhinolophus yonghoiseni Mammals Laurasiatheria 281 GCA_964662115.1 least weasel Mustela nivalis vulgaris Mammals Laurasiatheria 282 GCF_020740605.2 ring-tailed lemur Lemur catta Mammals Euarchontoglires 283 GCA_043728145.1 trefoil horseshoe bat Rhinolophus trifoliatus Mammals Laurasiatheria 284 GCA_043880285.1 Cyclops roundleaf bat Doryrhina cyclops Mammals Laurasiatheria 285 GCF_910594005.1 red deer Cervus elaphus Mammals Laurasiatheria 286 GCA_048126745.1 fallow deer Dama dama Mammals Laurasiatheria 287 GCF_014176215.1 Egyptian rousette Rousettus aegyptiacus Mammals Laurasiatheria 288 GCF_963930625.1 Reeves' muntjac Muntiacus reevesi Mammals Laurasiatheria 289 GCA_026018925.1 large tree shrew Tupaia tana Mammals Euarchontoglires 290 GCF_003369695.1 Brahman cow Bos taurus Mammals Laurasiatheria 291 GCA_041735815.1 goat Capra hircus Mammals Laurasiatheria 292 GCA_040805955.1 domestic sheep Ovis aries Mammals Laurasiatheria 293 GCF_042477335.2 bighorn sheep Ovis canadensis Mammals Laurasiatheria 294 GCF_902686445.1 grey squirrel Sciurus carolinensis Mammals Euarchontoglires 295 GCA_902686455.2 Eurasian red squirrel Sciurus vulgaris Mammals Euarchontoglires 296 GCA_028571685.1 yellow-spotted rock hyrax Heterohyrax brucei Mammals Other 297 GCF_027406575.1 sunda slow loris Nycticebus coucang Mammals Euarchontoglires 298 GCA_030848825.1 Brazilian free-tailed bat Tadarida brasiliensis Mammals Laurasiatheria 299 GCA_046562885.1 jaguar Panthera onca Mammals Laurasiatheria 300 GCA_964194105.1 European ground squirrel Spermophilus citellus Mammals Euarchontoglires 301 GCF_047511675.1 yellow bellied marmot Marmota flaviventris Mammals Euarchontoglires 302 GCA_048772815.1 golden-mantled ground squirrel Callospermophilus lateralis Mammals Euarchontoglires 303 GCA_037157525.1 Alvarez's mastiff bat Molossus alvarezi Mammals Laurasiatheria 304 GCA_039880945.1 Ebon mastiff bat Molossus nigricans Mammals Laurasiatheria 305 GCA_045843805.1 Arctic ground squirrel Urocitellus parryii Mammals Euarchontoglires 306 GCF_014108415.1 Pallas's mastiff bat Molossus molossus Mammals Laurasiatheria 307 GCA_022682495.2 common vampire bat Desmodus rotundus Mammals Laurasiatheria 308 GCA_964146895.2 Schreibers' long-fingered bat Miniopterus schreibersii Mammals Laurasiatheria 309 GCA_039655065.1 Merriam's long-tongued bat Glossophaga mutica Mammals Laurasiatheria 310 GCF_036850995.1 lesser sac-winged bat Saccopteryx leptura Mammals Laurasiatheria 311 GCF_036850765.1 greater sac-winged bat Saccopteryx bilineata Mammals Laurasiatheria 312 GCA_043880595.1 Lesser false vampire bat Megaderma spasma Mammals Laurasiatheria 313 GCA_037038545.1 proboscis bat Rhynchonycteris naso Mammals Laurasiatheria 314 GCA_043748645.1 Angolan free-tailed bat Mops condylurus Mammals Laurasiatheria 315 GCA_028451465.1 North American porcupine Erethizon dorsatum Mammals Euarchontoglires 316 GCF_004126475.2 pale spear-nosed bat Phyllostomus discolor Mammals Laurasiatheria 317 GCA_038363095.2 great fruit-eating bat Artibeus lituratus Mammals Laurasiatheria 318 GCA_038363145.1 intermediate fruit-eating bat Artibeus intermedius Mammals Laurasiatheria 319 GCA_047511655.1 North American beaver Castor canadensis Mammals Euarchontoglires 320 GCA_964194135.1 European mole Talpa europaea Mammals Laurasiatheria 321 GCA_964094495.2 whiskered bat Myotis mystacinus Mammals Laurasiatheria 322 GCF_027574615.1 big brown bat Eptesicus fuscus Mammals Laurasiatheria 323 GCA_963455305.1 brown big-eared bat Plecotus auritus Mammals Laurasiatheria 324 GCA_951640355.1 northern bat Eptesicus nilssonii Mammals Laurasiatheria 325 GCF_014108235.1 greater mouse-eared bat Myotis myotis Mammals Laurasiatheria 326 GCA_964212035.2 Natterer's bat Myotis nattereri Mammals Laurasiatheria 327 GCA_965115925.1 Geoffroy's bat Myotis emarginatus Mammals Laurasiatheria 328 GCF_963259705.1 Daubenton's bat Myotis daubentonii Mammals Laurasiatheria 329 GCA_043290085.1 black and rufous elephant shrew Rhynchocyon petersi Mammals Other 330 GCF_964237555.1 European rabbit Oryctolagus cuniculus Mammals Euarchontoglires 331 GCA_026230055.1 Townsend's big-eared bat Corynorhinus townsendii Mammals Laurasiatheria 332 GCA_963383645.1 common dormouse Muscardinus avellanarius Mammals Euarchontoglires 333 GCA_027563665.1 pallid bat Antrozous pallidus Mammals Laurasiatheria 334 GCA_048771875.1 common gundi Ctenodactylus gundi Mammals Euarchontoglires 335 GCA_964264875.2 lesser noctule Nyctalus leisleri Mammals Laurasiatheria 336 GCA_949987585.1 soprano pipistrelle Pipistrellus pygmaeus Mammals Laurasiatheria 337 GCF_014108245.1 Kuhl's pipistrelle Pipistrellus kuhlii Mammals Laurasiatheria 338 GCA_964656225.1 Nathusius's pipistrelle Pipistrellus nathusii Mammals Laurasiatheria 339 GCA_964339955.1 Hanaki's dwarf bat Pipistrellus hanaki Mammals Laurasiatheria 340 GCA_963924515.1 particolored bat Vespertilio murinus Mammals Laurasiatheria 341 GCF_020740685.1 Lesser Egyptian jerboa Jaculus jaculus Mammals Euarchontoglires 342 GCA_903992545.1 common pipistrelle Pipistrellus pipistrellus Mammals Laurasiatheria 343 GCF_030435755.1 American pika Ochotona princeps Mammals Euarchontoglires 344 GCF_903995425.1 Southern grasshopper mouse Onychomys torridus Mammals Euarchontoglires 345 GCA_026229955.1 North American deer mouse Peromyscus maniculatus sonoriensis Mammals Euarchontoglires 346 GCF_903992535.2 European water vole Arvicola amphibius Mammals Euarchontoglires 347 GCA_011762505.3 Nile rat Arvicanthis niloticus Mammals Euarchontoglires 348 GCA_964271855.1 Crete spiny mouse Acomys minous Mammals Euarchontoglires 349 GCF_950005125.1 European snow vole Chionomys nivalis Mammals Euarchontoglires 350 GCF_903995435.1 golden spiny mouse Acomys russatus Mammals Euarchontoglires 351 GCA_037038515.1 Eastern meadow vole Microtus pennsylvanicus Mammals Euarchontoglires 352 mm39 mouse Mus musculus Mammals Euarchontoglires 353 GCA_031878675.1 Botta's pocket gopher Thomomys bottae Mammals Euarchontoglires 354 GCF_015227675.2 Norway rat Rattus norvegicus Mammals Euarchontoglires 355 GCA_949316315.1 house mouse Mus musculus Mammals Euarchontoglires 356 GCF_947179515.1 European woodmouse Apodemus sylvaticus Mammals Euarchontoglires 357 GCF_950295315.1 European hedgehog Erinaceus europaeus Mammals Laurasiatheria 358 GCF_027595985.1 European shrew Sorex araneus Mammals Laurasiatheria 359 GCA_963924665.1 European harvest mouse Micromys minutus Mammals Euarchontoglires 360 GCF_024139225.1 Etruscan shrew Suncus etruscus Mammals Laurasiatheria 361 GCF_901001135.1 two-lined caecilian Rhinatrema bivittatum Amphibians 362 GCA_901765095.2 tiny cayenne caecilian Microcaecilia unicolor Amphibians 363 GCF_902459505.1 Gaboon caecilian Geotrypetes seraphini Amphibians 364 GCA_040206685.1 coastal tailed frog Ascaphus truei Amphibians 365 GCF_037176945.1 African coelacanth Latimeria chalumnae Fishes Other 366 GCA_027410445.1 painted frog Discoglossus pictus Amphibians 367 GCF_027358695.1 plain spadefoot toad Spea bombifrons Amphibians 368 GCA_038501925.1 Peter's clawed frog Xenopus petersii Amphibians 369 GCF_027789765.1 hourglass treefrog Dendropsophus ebraccatus Amphibians 370 GCF_035609145.1 coqui Eleutherodactylus coqui Amphibians 371 GCF_905171765.1 European toad Bufo bufo Amphibians 372 GCF_029499605.1 Sardinian treefrog Hyla sarda Amphibians 373 GCA_031893055.1 rufous frog Leptodactylus fuscus Amphibians 374 GCA_038048845.1 Fleay's barred frog Mixophyes fleayi Amphibians 375 GCF_040894005.1 tungara frog Engystomops pustulosus Amphibians 376 GCF_902713425.1 sterlet Acipenser ruthenus Fishes Ray Finned 377 GCF_036172605.1 common spadefoot toad Pelobates fuscus Amphibians 378 GCF_028390025.1 Southern corroboree frog Pseudophryne corroboree Amphibians 379 GCA_048565345.1 golden mantella Mantella aurantiaca Amphibians 380 GCF_040937935.1 Riggenbach's reed frog Hyperolius riggenbachi Amphibians 381 GCF_032444005.1 mimic poison frog Ranitomeya imitator Amphibians 382 GCA_027917425.1 Eastern narrow-mouthed toad Gastrophryne carolinensis Amphibians 383 GCA_965119305.1 pool frog Pelophylax lessonae Amphibians 384 GCF_905171775.1 European common frog Rana temporaria Amphibians 385 GCA_048569485.1 Edward's Rocket Frog Anomaloglossus baeobatrachus Amphibians 386 GCA_036172795.1 Iberian parsley frog Pelodytes ibericus Amphibians 387 GCF_900747795.2 reedfish Erpetoichthys calabaricus Fishes Ray Finned 388 GCA_037306005.1 Mexican burrowing toad Rhinophrynus dorsalis Amphibians 389 GCF_036365525.1 horn shark Heterodontus francisci Fishes Other 390 GCF_035084215.1 sharpnose sevengill shark Heptranchias perlo Fishes Other 391 GCA_964194155.1 basking shark Cetorhinus maximus Fishes Other 392 GCF_017639515.1 great white shark Carcharodon carcharias Fishes Other 393 GCF_044704955.1 Japanese sawshark Pristiophorus japonicus Fishes Other 394 GCF_027579735.1 European fire-bellied toad Bombina bombina Amphibians 395 GCA_964205295.1 yellow-bellied toad Bombina variegata Amphibians 396 GCA_964213995.1 starry smooth-hound shark Mustelus asterias Fishes Other 397 GCF_020745735.1 epaulette shark Hemiscyllium ocellatum Fishes Other 398 GCF_902713615.1 small-spotted catshark Scyliorhinus canicula Fishes Other 399 GCA_035084275.1 spotted ratfish Hydrolagus colliei Fishes Other 400 GCF_030684315.1 zebra shark Stegostoma tigrinum Fishes Other 401 GCF_009764475.1 smalltooth sawfish Pristis pectinata Fishes Other 402 GCF_036373705.1 bowfin Amia calva Fishes Ray Finned 403 GCF_040954835.1 spotted gar Lepisosteus oculatus Fishes Ray Finned 404 GCF_036971445.1 lesser electric ray Narcine bancroftii Fishes Other 405 GCA_963514005.1 blonde ray Raja brachyura Fishes Other 406 GCF_010909765.2 thorny skate Amblyraja radiata Fishes Other 407 GCF_030028105.1 Atlantic manta ray Mobula birostris Fishes Other 408 GCF_030144855.1 Atlantic stingray Hypanus sabinus Fishes Other 409 GCF_013368585.1 Indo-pacific tarpon Megalops cyprinoides Fishes Ray Finned 410 GCF_013347855.1 European eel Anguilla anguilla Fishes Ray Finned 411 GCF_900964775.1 golden arowana Scleropages formosus Fishes Ray Finned 412 GCF_963514075.1 European conger Conger conger Fishes Ray Finned 413 GCA_951799395.1 greater argentine Argentina silus Fishes Ray Finned 414 GCF_902362185.1 milkfish Chanos chanos Fishes Ray Finned 415 GCA_964263955.1 common whitefish Coregonus lavaretus Fishes Ray Finned 416 GCA_963989245.1 pencil smelt Nansenia antarctica Fishes Ray Finned 417 GCF_011004845.1 Northern pike Esox lucius Fishes Ray Finned 418 GCA_901001165.2 brown trout Salmo trutta Fishes Ray Finned 419 GCF_900700375.1 denticle herring Denticeps clupeoides Fishes Ray Finned 420 GCA_963457725.1 European sprat Sprattus sprattus Fishes Ray Finned 421 GCA_949987555.1 large-eye snaggletooth Borostomias antarcticus Fishes Ray Finned 422 GCA_048544225.1 Osbeck's grenadier anchovy Coilia mystus Fishes Ray Finned 423 GCA_041902795.1 electric eel Electrophorus electricus Fishes Ray Finned 424 GCF_963854185.1 sardine Sardina pilchardus Fishes Ray Finned 425 GCF_018492685.1 American shad Alosa sapidissima Fishes Ray Finned 426 GCF_030463535.1 golden dorado Salminus brasiliensis Fishes Ray Finned 427 GCF_023375975.1 Mexican tetra Astyanax mexicanus Fishes Ray Finned 428 GCA_936440315.1 barbel Barbus barbus Fishes Ray Finned 429 GCA_038355195.1 rainbow smelt Osmerus mordax Fishes Ray Finned 430 GCF_963692335.1 European smelt Osmerus eperlanus Fishes Ray Finned 431 GCA_944039275.1 zebrafish Danio rerio Fishes Ray Finned 432 GCF_015220715.1 red-bellied piranha Pygocentrus nattereri Fishes Ray Finned 433 GCA_048301585.1 Rhinogobio nasutus Rhinogobio nasutus Fishes Ray Finned 434 GCF_963082965.1 common carp Carassius carassius Fishes Ray Finned 435 GCA_947034865.1 stone loach Barbatula barbatula Fishes Ray Finned 436 GCA_038024135.1 blacktail shiner Cyprinella venusta Fishes Ray Finned 437 GCA_949357685.1 gudgeon Gobio gobio Fishes Ray Finned 438 GCA_965113295.1 common dace Leuciscus leuciscus Fishes Ray Finned 439 GCA_963993115.1 common bream Abramis brama Fishes Ray Finned 440 GCA_951802725.1 roach minnow Rutilus rutilus Fishes Ray Finned 441 GCA_964197995.1 common rudd Scardinius erythrophthalmus Fishes Ray Finned 442 GCA_949319135.1 European chub Squalius cephalus Fishes Ray Finned 443 GCA_949152265.1 Eurasian minnow Phoxinus phoxinus Fishes Ray Finned 444 GCF_029633855.1 trahira Hoplias malabaricus Fishes Ray Finned 445 GCA_036784965.1 Arctic char Salvelinus alpinus oquassa Fishes Ray Finned 446 GCA_048537225.1 Bermuda beardfish Polymixia cf. hollisterae Fishes Ray Finned 447 GCF_027358585.1 striped catfish Pangasianodon hypophthalmus Fishes Ray Finned 448 GCA_047511565.1 beardfish Polymixia lowei Fishes Ray Finned 449 GCA_946808225.1 Aristotle's catfish Silurus aristotelis Fishes Ray Finned 450 GCA_024256435.1 North African catfish Clarias gariepinus Fishes Ray Finned 451 GCF_902150065.1 pinecone soldierfish Myripristis murdjan Fishes Ray Finned 452 GCA_048128805.1 bight redfish Centroberyx gerrardi Fishes Ray Finned 453 GCF_030014385.1 Rosablanca cavefish Trichomycterus rosablanca Fishes Ray Finned 454 GCA_017639675.1 peladilla Aplochiton taeniatus Fishes Ray Finned 455 GCA_048569125.1 silver spinyfin Diretmus argenteus Fishes Ray Finned 456 GCA_963921795.1 Lantern fish Nannobrachium achirus Fishes Ray Finned 457 GCA_042242135.1 Australian herring Arripis georgiana Fishes Ray Finned 458 GCF_963924715.1 northern bluefin tuna Thunnus thynnus Fishes Ray Finned 459 GCF_910596095.1 southern bluefin tuna Thunnus maccoyii Fishes Ray Finned 460 GCF_914725855.1 yellowfin tuna Thunnus albacares Fishes Ray Finned 461 GCA_963454915.1 minispotted lanternfish Gymnoscopelus microlampas Fishes Ray Finned 462 GCA_031216445.1 Chinese sea bass Lateolabrax maculatus Fishes Ray Finned 463 GCF_043641665.1 old wife Enoplosus armatus Fishes Ray Finned 464 GCA_964638095.1 crested bigscale Poromitra crassiceps Fishes Ray Finned 465 GCF_027579695.1 blue salmon catfish Neoarius graeffei Fishes Ray Finned 466 GCA_963280865.1 Brauer's lanternfish Gymnoscopelus braueri Fishes Ray Finned 467 GCF_029633865.1 smalleye Pacific opah Lampris incognitus Fishes Ray Finned 468 GCF_017976425.1 banded archerfish Toxotes jaculatrix Fishes Ray Finned 469 GCF_042242105.1 rough bullseye Pempheris klunzingeri Fishes Ray Finned 470 GCA_045363895.1 sharptooth jobfish Pristipomoides typus Fishes Ray Finned 471 GCA_048128725.1 chinamanfish Symphorus nematophorus Fishes Ray Finned 472 GCA_048129055.1 yellow and blueback fusilier Caesio teres Fishes Ray Finned 473 GCF_017976325.1 copperband butterflyfish Chelmon rostratus Fishes Ray Finned 474 GCA_019677235.1 large-mouth bass Micropterus salmoides Fishes Ray Finned 475 GCA_048129235.1 rankin cod Epinephelus rankini Fishes Ray Finned 476 GCA_041903045.1 giant grouper Epinephelus lanceolatus Fishes Ray Finned 477 GCF_039877785.1 chevron butterflyfish Chaetodon trifascialis Fishes Ray Finned 478 GCF_020382885.2 spotted scat Scatophagus argus Fishes Ray Finned 479 GCA_965226575.1 common seabream Pagrus pagrus Fishes Ray Finned 480 GCA_045362495.1 spangled emperor Lethrinus nebulosus Fishes Ray Finned 481 GCA_960531495.1 John dory Zeus faber Fishes Ray Finned 482 GCF_904848185.1 yellowfin sea bream Acanthopagrus latus Fishes Ray Finned 483 GCA_041753875.1 black porgy Acanthopagrus schlegelii Fishes Ray Finned 484 GCA_963691815.1 lesser weever Echiichthys vipera Fishes Ray Finned 485 GCF_900324465.2 climbing perch Anabas testudineus Fishes Ray Finned 486 GCF_900324485.2 zig-zag eel Mastacembelus armatus Fishes Ray Finned 487 GCF_900880675.1 gilthead seabream Sparus aurata Fishes Ray Finned 488 GCA_905171665.2 Atlantic horse mackerel Trachurus trachurus Fishes Ray Finned 489 GCA_043250625.1 Acadian redfish Sebastes fasciatus Fishes Ray Finned 490 GCF_015220745.1 honeycomb rockfish Sebastes umbrosus Fishes Ray Finned 491 GCF_900963305.1 live sharksucker Echeneis naucrates Fishes Ray Finned 492 GCA_963514085.1 thicklip grey mullet Chelon labrosus Fishes Ray Finned 493 GCF_009819705.1 Atlantic halibut Hippoglossus hippoglossus Fishes Ray Finned 494 GCF_963691925.1 Atlantic mackerel Scomber scombrus Fishes Ray Finned 495 GCA_963854745.1 turbot Scophthalmus maximus Fishes Ray Finned 496 GCA_964266715.1 lemon sole Microstomus kitt Fishes Ray Finned 497 GCA_047301625.1 blackspot tuskfish Choerodon schoenleinii Fishes Ray Finned 498 GCF_900634625.1 Indian glassy fish Parambassis ranga Fishes Ray Finned 499 GCF_902148855.1 orbiculate cardinalfish Sphaeramia orbicularis Fishes Ray Finned 500 GCF_963584025.1 cuckoo wrasse Labrus mixtus Fishes Ray Finned 501 GCF_027409825.1 Pacific chub mackerel Scomber japonicus Fishes Ray Finned 502 GCA_020745685.1 cunner Tautogolabrus adspersus Fishes Ray Finned 503 GCA_910591455.2 rock gunnel Pholis gunnellus Fishes Ray Finned 504 GCA_963514095.1 grey gurnard Eutrigla gurnardus Fishes Ray Finned 505 GCF_963576545.1 common dab Limanda limanda Fishes Ray Finned 506 GCF_963930695.1 ballan wrasse Labrus bergylta Fishes Ray Finned 507 GCF_007364275.1 flier cichlid Archocentrus centrarchus Fishes Ray Finned 508 GCA_963924005.1 Bolin’s lanternfish Protomyctophum bolini Fishes Ray Finned 509 GCA_048301465.1 West Atlantic trumpetfish Aulostomus maculatus Fishes Ray Finned 510 GCF_949316205.1 European flounder Platichthys flesus Fishes Ray Finned 511 GCA_965226115.1 flavescent peacock cichlid Aulonocara stuartgranti Fishes Ray Finned 512 GCA_963969265.1 Chilingali cichlid Rhamphochromis chilingali Fishes Ray Finned 513 GCA_964374335.1 Eastern happy Astatotilapia calliptera Fishes Ray Finned 514 GCA_951216825.1 Antarctic lanternfish Electrona antarctica Fishes Ray Finned 515 GCA_963971535.1 Antarctic jonasfish Notolepis coatsi Fishes Ray Finned 516 GCA_910589615.1 long-spined sea scorpion Taurulus bubalis Fishes Ray Finned 517 GCA_028022725.1 blackbelly eelpout Lycodopsis pacificus Fishes Ray Finned 518 GCF_958295425.1 common sole Solea solea Fishes Ray Finned 519 GCF_947347685.1 European plaice Pleuronectes platessa Fishes Ray Finned 520 GCA_949748355.1 limp eelpout Melanostigma gelatinosum Fishes Ray Finned 521 GCF_900634795.4 Siamese fighting fish Betta splendens Fishes Ray Finned 522 GCA_964188405.1 parallel lanternfish Protomyctophum parallelum Fishes Ray Finned 523 GCA_046255685.1 Northern cavefish Amblyopsis spelaea Fishes Ray Finned 524 GCA_963457635.1 thickback sole Microchirus variegatus Fishes Ray Finned 525 GCF_009762535.1 New Zealand spotty wrasse Notolabrus celidotus Fishes Ray Finned 526 GCF_017639745.1 Boeseman’s rainbowfish Melanotaenia boesemani Fishes Ray Finned 527 GCF_902500255.1 prehistoric monster fish Thalassophryne amazonica Fishes Ray Finned 528 GCA_049190665.1 arrowtail Melanonus zugmayeri Fishes Ray Finned 529 GCA_949987685.1 lesseer sand eel Ammodytes marinus Fishes Ray Finned 530 GCA_049082185.1 crested weedfish Cristiceps australis Fishes Ray Finned 531 GCA_014839685.1 largescale four-eyes Anableps anableps Fishes Ray Finned 532 GCF_009769545.1 lumpfish Cyclopterus lumpus Fishes Ray Finned 533 GCA_949357725.1 greater sand eel Hyperoplus immaculatus Fishes Ray Finned 534 GCA_027942865.1 pejerrey Odontesthes bonariensis Fishes Ray Finned 535 GCA_014839995.1 needlefish Xenentodon cancila Fishes Ray Finned 536 GCA_964276395.1 three-spined stickleback Gasterosteus aculeatus Fishes Ray Finned 537 GCA_963383615.1 shanny Lipophrys pholis Fishes Ray Finned 538 GCA_933228915.1 telmatherina bonti Telmatherina bonti Fishes Ray Finned 539 GCA_947650265.1 corkwing wrasse Symphodus melops Fishes Ray Finned 540 GCF_902148845.1 jewelled blenny Salarias fasciatus Fishes Ray Finned 541 GCF_021462225.1 darkedged splitfin Girardinichthys multiradiatus Fishes Ray Finned 542 GCA_020510985.1 convict blenny Pholidichthys leucotaenia Fishes Ray Finned 543 GCA_048126635.1 sea stickleback Spinachia spinachia Fishes Ray Finned 544 GCA_037039145.1 banded killifish Fundulus diaphanus Fishes Ray Finned 545 GCA_013358685.1 warty frogfish Antennarius maculatus Fishes Ray Finned 546 GCF_900634415.1 channel bull blenny Cottoperca gobio Fishes Ray Finned 547 GCF_949316345.1 ninespine stickleback Pungitius pungitius Fishes Ray Finned 548 GCA_949606895.1 marbled rockcod Notothenia rossii Fishes Ray Finned 549 GCA_963422515.1 butterfly blenny Blennius ocellaris Fishes Ray Finned 550 GCA_949987615.1 European pollock Pollachius pollachius Fishes Ray Finned 551 GCA_048628825.1 Atlantic silverside Menidia menidia Fishes Ray Finned 552 GCF_900634775.1 blunt-snouted clingfish Gouania willdenowi Fishes Ray Finned 553 GCF_901000725.2 Japanese puffer (torafugu) Takifugu rubripes Fishes Ray Finned 554 GCF_902167405.1 Atlantic cod Gadus morhua Fishes Ray Finned 555 GCA_951799975.1 black goby Gobius niger Fishes Ray Finned 556 GCF_009829125.3 Korean giant-fin mudskipper Periophthalmus magnuspinnatus Fishes Ray Finned 557 GCA_044231665.1 ocellated dragonet Neosynchiropus ocellatus Fishes Ray Finned 558 GCA_044231675.1 picturesque dragonet Synchiropus picturatus Fishes Ray Finned 559 GCF_901709675.1 greater pipefish Syngnathus acus Fishes Ray Finned 560 GCA_048301445.1 broad-nosed pipefish Syngnathus typhle Fishes Ray Finned 561 GCA_964030765.1 blue whiting Micromesistius poutassou Fishes Ray Finned 562 GCA_019207075.1 belcher's lancelet Branchiostoma belcheri Invertebrates 563 GCA_015852565.1 Florida amphioxus Branchiostoma floridae Invertebrates 564 GCA_035083965.1 European lancelet Branchiostoma lanceolatum Invertebrates 565 GCA_048934315.1 sea lamprey Petromyzon marinus Fishes Other 566 GCA_964198595.1 European river lamprey Lampetra fluviatilis Fishes Other 567 GCA_964187855.1 Atlantic hagfish Myxine glutinosa Fishes Other 568 GCA_040954625.2 tongue acorn worm Balanoglossus misakiensis Invertebrates 569 GCF_902459465.1 common starfish Asterias rubens Invertebrates 570 GCA_947561715.1 pink sea squirt Ascidia mentula Invertebrates 571 GCA_963082875.1 Orange-tipped sea squirt Corella eumyota Invertebrates 572 GCA_963924565.1 European sea squirt Ascidiella aspersa Invertebrates 573 GCA_947623445.1 light-bulb sea squirt Clavelina lepadiformis Invertebrates 574 GCA_964204865.1 tunicate S.clava Styela clava Invertebrates 575 GCA_918807975.1 clonial sea squirt Aplidium turbinatum Invertebrates 576 GCA_963675345.1 Trididemnum clinides Trididemnum clinides Invertebrates 577 GCA_965202585.1 Thalia democratica Thalia democratica Invertebrates
Table 1. Genome assemblies included in the VGP 577-way alignment.
Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J et al. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021 Apr 29;592(7856):737-746. DOI: 10.1038/s41586-021-03451-0; PMID: 33911273; PMC: PMC8081667
Paten B, Earl D, Nguyen N, Diekhans M, Zerbino D, Haussler D. Cactus: Algorithms for genome multiple sequence alignment. Genome Biol. 2011 Jun 24;12(6):R63. DOI: 10.1186/gb-2011-12-6-r63; PMID: 21703006; PMC: PMC3218810