This directory contains a dump of the UCSC genome annotation database for the
    Aug. 2019 (Kamilah_GGO_v0/gorGor6) assembly of the gorilla genome
    (gorGor6, University of Washington) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/2156
    https://www.ncbi.nlm.nih.gov/genome/assembly/4439481
    https://www.ncbi.nlm.nih.gov/bioproject/369439
    https://www.ncbi.nlm.nih.gov/biosample/SAMN11078986

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=gorGor6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/gorGor6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/gorGor6/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql gorGor6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql gorGor6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                        Last modified      Size  Description
Parent Directory - all_mrna.sql 2019-12-05 11:48 2.1K all_mrna.txt.gz 2019-12-05 11:48 21K augustusGene.sql 2019-11-20 14:04 1.9K augustusGene.txt.gz 2019-11-20 14:04 2.2M bigFiles.sql 2021-04-18 03:03 1.4K bigFiles.txt.gz 2021-04-18 03:03 119 chainHg38.sql 2019-11-21 10:06 1.7K chainHg38.txt.gz 2019-11-21 10:06 48M chainHg38Link.sql 2019-11-21 10:07 1.5K chainHg38Link.txt.gz 2019-11-21 10:07 166M chainMm10.sql 2019-11-21 08:43 1.7K chainMm10.txt.gz 2019-11-21 08:43 99M chainMm10Link.sql 2019-11-21 08:47 1.5K chainMm10Link.txt.gz 2019-11-21 08:47 567M chainMm39.sql 2020-11-24 11:03 1.7K chainMm39.txt.gz 2020-11-24 11:03 96M chainMm39Link.sql 2020-11-24 11:07 1.6K chainMm39Link.txt.gz 2020-11-24 11:07 542M chromAlias.sql 2019-11-19 13:47 1.4K chromAlias.txt.gz 2019-11-19 13:47 56K chromInfo.sql 2019-11-19 12:34 1.4K chromInfo.txt.gz 2019-11-19 12:34 34K cpgIslandExt.sql 2019-11-20 11:07 1.7K cpgIslandExt.txt.gz 2019-11-20 11:07 579K cpgIslandExtUnmasked.sql 2019-11-19 13:32 1.7K cpgIslandExtUnmasked.txt.gz 2019-11-19 13:32 951K crisprAllTargets.sql 2019-11-27 14:33 1.3K crisprAllTargets.txt.gz 2019-11-27 14:33 69 cytoBandIdeo.sql 2019-11-19 12:34 1.5K cytoBandIdeo.txt.gz 2019-11-19 12:34 31K extNcbiRefSeq.sql 2019-11-20 13:57 1.4K extNcbiRefSeq.txt.gz 2019-11-20 13:57 91 gap.sql 2019-11-19 10:40 1.6K gap.txt.gz 2019-11-19 10:40 14K gc5BaseBw.sql 2019-11-19 11:59 1.3K gc5BaseBw.txt.gz 2019-11-19 11:59 66 genscan.sql 2019-11-20 12:43 1.7K genscan.txt.gz 2019-11-20 12:43 2.8M gold.sql 2019-11-19 10:40 1.7K gold.txt.gz 2019-11-19 10:40 81K grp.sql 2019-11-19 12:34 1.3K grp.txt.gz 2019-11-19 12:34 213 hgFindSpec.sql 2021-03-26 09:06 1.8K hgFindSpec.txt.gz 2021-03-26 09:06 1.0K history.sql 2019-11-27 14:33 1.6K history.txt.gz 2019-11-27 14:33 899 microsat.sql 2019-11-20 11:02 1.5K microsat.txt.gz 2019-11-20 11:02 307K mrnaOrientInfo.sql 2019-12-05 15:40 1.8K mrnaOrientInfo.txt.gz 2019-12-05 15:40 12K ncbiRefSeq.sql 2019-11-20 12:12 1.9K ncbiRefSeq.txt.gz 2019-11-20 12:12 3.3M ncbiRefSeqCds.sql 2019-11-20 13:57 1.3K ncbiRefSeqCds.txt.gz 2019-11-20 13:57 350K ncbiRefSeqCurated.sql 2019-11-20 12:12 2.0K ncbiRefSeqCurated.txt.gz 2019-11-20 12:12 17K ncbiRefSeqLink.sql 2019-11-20 12:12 2.0K ncbiRefSeqLink.txt.gz 2019-11-20 12:12 1.6M ncbiRefSeqOther.sql 2019-11-20 13:57 1.3K ncbiRefSeqOther.txt.gz 2019-11-20 13:57 75 ncbiRefSeqPepTable.sql 2019-11-20 13:57 1.4K ncbiRefSeqPepTable.txt.gz 2019-11-20 13:57 9.1M ncbiRefSeqPredicted.sql 2019-11-20 12:12 2.0K ncbiRefSeqPredicted.txt.gz 2019-11-20 12:12 3.3M ncbiRefSeqPsl.sql 2019-11-20 12:12 2.1K ncbiRefSeqPsl.txt.gz 2019-11-20 12:12 4.3M nestedRepeats.sql 2019-11-19 20:12 1.9K nestedRepeats.txt.gz 2019-11-19 20:12 17M netHg38.sql 2019-11-21 10:08 2.1K netHg38.txt.gz 2019-11-21 10:08 6.2M netMm10.sql 2019-11-21 08:51 2.1K netMm10.txt.gz 2019-11-21 08:51 81M netMm39.sql 2020-11-24 11:11 2.1K netMm39.txt.gz 2020-11-24 11:11 81M refFlat.sql 2020-05-06 15:21 1.7K refFlat.txt.gz 2020-05-06 15:21 15K refGene.sql 2020-05-06 15:21 1.9K refGene.txt.gz 2020-05-06 15:21 18K refSeqAli.sql 2019-12-05 12:00 2.1K refSeqAli.txt.gz 2019-12-05 12:00 17K rmsk.sql 2019-11-19 20:10 1.9K rmsk.txt.gz 2019-11-19 20:10 137M seqNcbiRefSeq.sql 2019-11-20 13:57 1.5K seqNcbiRefSeq.txt.gz 2019-11-20 13:57 947K simpleRepeat.sql 2019-11-19 17:36 1.9K simpleRepeat.txt.gz 2019-11-19 17:36 25M tableDescriptions.sql 2021-03-13 06:37 1.4K tableDescriptions.txt.gz 2021-03-13 06:37 6.0K tableList.sql 2021-04-18 03:03 1.6K tableList.txt.gz 2021-04-18 03:03 2.9K trackDb.sql 2021-03-26 09:06 2.1K trackDb.txt.gz 2021-03-26 09:06 32K ucscToINSDC.sql 2019-11-19 13:44 1.4K ucscToINSDC.txt.gz 2019-11-19 13:44 49K ucscToRefSeq.sql 2019-11-19 20:41 1.4K ucscToRefSeq.txt.gz 2019-11-19 20:41 46K windowmaskerSdust.sql 2019-11-19 23:41 1.5K windowmaskerSdust.txt.gz 2019-11-19 23:41 143M xenoRefFlat.sql 2020-05-06 15:36 1.7K xenoRefFlat.txt.gz 2020-05-06 15:36 21M xenoRefGene.sql 2020-05-06 15:36 1.9K xenoRefGene.txt.gz 2020-05-06 15:36 23M xenoRefSeqAli.sql 2020-05-06 15:36 2.1K xenoRefSeqAli.txt.gz 2020-05-06 15:36 25M