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  Chromosome 20 - RH Maps - Single Contig
 

Chromosome 20 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011387 NT_025215 NT_028392 NT_011362 NT_030871 NT_035608 NT_011333


  NT_028392
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL121723305708513RH6410720172.46    2 AC004477.1, AC018521.8
S/G/Y/R/B/O NT_028392AL031650306629703RH9232820167.33    1  
S/G/Y/R/B/O NT_028392AL121751306747823RH14972  201617.00  1 AL121751.12
S/G/Y/R/B/O NT_028392AL121751307263653RH10202820169.71    1  
S/G/Y/R/B/O NT_028392AL110115308486973RH3894220170.94    1  
S/G/Y/R/B/O NT_028392AL110115308549963RH10327520167.80    1  
S/G/Y/R/B/O NT_028392AL110115308561143RH10364720172.46    1  
S/G/Y/R/B/O NT_028392AL117381308916253          
S/G/Y/R/B/O NT_028392AL160175310871293RH1628120173.78    1  
S/G/Y/R/B/O NT_028392AL359765311598783          
S/G/Y/R/B/O NT_028392AL031658311746313RH1516720176.00    1 AL031658.11
S/G/Y/R/B/O NT_028392AL031658312307623RH6408720178.38  20172.801 AL031658.11
S/G/Y/R/B/O NT_028392AL031658312758063RH3753620179.80201597.00  1 AL031658.11
S/G/Y/R/B/O NT_028392AL031658312787033RH3754320180.81    1 AL031658.11
S/G/Y/R/B/O NT_028392AL031658313176903RH3603720176.32    1  
S/G/Y/R/B/O NT_028392AL353092313364343          
S/G/Y/R/B/O NT_028392AL049539313672313RH9289020179.80    1  
S/G/Y/R/B/O NT_028392AL049539313871383RH6402720176.09  20174.301 AL049539.21
S/G/Y/R/B/O NT_028392AL049539313873223RH2300620168.23    1 AL049539.21
S/G/Y/R/B/O NT_028392AL049539313874033RH4542720178.28    1  
S/G/Y/R/B/O NT_028392AL049539314525583RH6416320169.03    1  
S/G/Y/R/B/O NT_028392AL049539314525873RH6375520180.81    1 AL049539.21
S/G/Y/R/B/O NT_028392AL121897314785513RH2541120175.68    1  
S/G/Y/R/B/O NT_028392AL121897316178243RH2511020172.15    1  
S/G/Y/R/B/O NT_028392AL121897316178903RH1217120175.68    1  
S/G/Y/R/B/O NT_028392AL354800316190833RH5736820168.36  20172.501 AL354800.4
S/G/Y/R/B/O NT_028392AL354800316192193RH2500220175.68    1  
S/G/Y/R/B/O NT_028392AL354800316195513RH1236620172.24    1  
S/G/Y/R/B/O NT_028392AL354800316205653RH1215720182.73    1  
S/G/Y/R/B/O NT_028392AL121583316368003RH10250520171.70    1  
S/G/Y/R/B/O NT_028392AL121583316411653RH6408220168.23  20175.301 AL121583.25
S/G/Y/R/B/O NT_028392AL121583317192233RH6414920186.16    1  
S/G/Y/R/B/O NT_028392AL034550317235743RH38289  201697.00  1 AL034550.31
S/G/Y/R/B/O NT_028392AL034550317237083RH6609220187.68    1  
S/G/Y/R/B/O NT_028392AL034550317248253RH2558420188.38    1  
S/G/Y/R/B/O NT_028392AL034550317248493RH1204420188.38    1  
S/G/Y/R/B/O NT_028392AL034550317288613RH5726220188.18  20195.901 AL034550.31
S/G/Y/R/B/O NT_028392AL034550317289673RH1718920188.38    1 AL034550.31
S/G/Y/R/B/O NT_028392AL034550317329733RH7549220170.14    1  
S/G/Y/R/B/O NT_028392AL034550317639043RH3750220188.28    1 AC017072.5, AL034550.31
S/G/Y/R/B/O NT_028392AL133343318772043RH31475  201693.00  1 AC017072.5, AL133343.23
S/G/Y/R/B/O NT_028392AL133343318789433WI-3508    20186.801 AC017072.5, AL133343.23
S/G/Y/R/B/O NT_028392AL132653319174463RH6403920191.24  20194.701 AC017072.5, AL132653.22
S/G/Y/R/B/O NT_028392AL035071320655733RH6417720191.45201709.00  1 AL035071.17, AL354832.10
S/G/Y/R/B/O NT_028392AL035071320982793RH6782120190.59    1  
S/G/Y/R/B/O NT_028392AL035071321063963RH1801920191.03    1  
S/G/Y/R/B/O NT_028392AL035071321150023RH1218820190.92    1  
S/G/Y/R/B/O NT_028392AL390298321154763          
S/G/Y/R/B/O NT_028392AL139826321645843          
S/G/Y/R/B/O NT_028392AL121756323679513RH5746720193.00  20201.901 AL121756.14


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL137225323743053          
S/G/Y/R/B/O NT_028392AL121901324943403RH3751220193.10  20197.401 AL121901.20
S/G/Y/R/B/O NT_028392AL355392326154223RH1244220193.70    1  
S/G/Y/R/B/O NT_028392AL355392326302413RH7548320194.33    1  
S/G/Y/R/B/O NT_028392AL355392326533493RH6606420193.00    1  
S/G/Y/R/B/O NT_028392AL355392326556553RH14970  201758.00  1 AC023015.2, AL355392.7
S/G/Y/R/B/O NT_028392AL355392326557053RH6606820192.65    1  
S/G/Y/R/B/O NT_028392AL355392326578993RH14969  201758.00  1 AC023015.2, AL355392.7
S/G/Y/R/B/O NT_028392AL355392326580393RH6609620193.70    1  
S/G/Y/R/B/O NT_028392AL355392326644453RH6374320193.00    1 AC023015.2, AL355392.7
S/G/Y/R/B/O NT_028392AL355392326644713RH6700220192.65    1 AC023015.2, AL355392.7
S/G/Y/R/B/O NT_028392AL355392326644813RH4183520193.70    1  
S/G/Y/R/B/O NT_028392AL162505327100403          
S/G/Y/R/B/O NT_028392AL034421328040733RH4912220193.00201797.00  1 AL034421.7
S/G/Y/R/B/O NT_028392AL121906328804833RH10288820193.10    1  
S/G/Y/R/B/O NT_028392AL121906329018033RH1218520192.65    1  
S/G/Y/R/B/O NT_028392AL121906329052353RH6376020193.00    1 AL121906.18
S/G/Y/R/B/O NT_028392AL121906329052863RH1839020192.65    1  
S/G/Y/R/B/O NT_028392AL121906329062173RH5717320193.00  20200.201 AL121906.18
S/G/Y/R/B/O NT_028392AL121906329062203RH1181620194.39    1  
S/G/Y/R/B/O NT_028392AL121906329062743RH1054920192.65    1 AC027375.1, AL121906.18
S/G/Y/R/B/O NT_028392AL121906329136523RH1717220192.65    1 AL121906.18
S/G/Y/R/B/O NT_028392AL121906329136763RH1269920194.28    1  
S/G/Y/R/B/O NT_028392AL121906329322303RH7837920194.39    1  
S/G/Y/R/B/O NT_028392AL121906329330103RH8022820193.00    1  
S/G/Y/R/B/O NT_028392AL050349329636193RH5725520194.06  20204.101 AC023227.3, AL050349.27
S/G/Y/R/B/O NT_028392AL050349329637163RH3900220194.28    1  
S/G/Y/R/B/O NT_028392AL050349330440083RH9243120194.33    1  
S/G/Y/R/B/O NT_028392AL050349331104773RH5720420195.03  20209.301 AC087444.1, AL050349.27
S/G/Y/R/B/O NT_028392AL050349331105623RH7607620195.87    1  
S/G/Y/R/B/O NT_028392AL034549331173303          
S/G/Y/R/B/O NT_028392AL031668333363883RH5749120195.03  20209.101 AL031668.23
S/G/Y/R/B/O NT_028392AL031668333365503RH986220195.98    1  
S/G/Y/R/B/O NT_028392AL031668333410863RH7676520208.15    1  
S/G/Y/R/B/O NT_028392AL031668333423593AFMA152YG1    20211.501 AL031668.23
S/G/Y/R/B/O NT_028392AL031668333448243RH1227720195.98    1  
S/G/Y/R/B/O NT_028392AL031668333448283RH1163320195.98    1  
S/G/Y/R/B/O NT_028392AL031668333448883RH3695720195.81    1  
S/G/Y/R/B/O NT_028392AL031668333449593RH1034620195.46    1  
S/G/Y/R/B/O NT_028392AL031668333461743RH3584620195.87    2  
S/G/Y/R/B/O NT_028392AL031668333541113RH3634620195.81    1  
S/G/Y/R/B/O NT_028392AL031668333550713RH4797920195.87    1  
S/G/Y/R/B/O NT_028392AL035458335207733RH6415520203.62    1  
S/G/Y/R/B/O NT_028392AL035458335257093RH5727520203.92  20209.501 AL035458.35, AL137253.8
S/G/Y/R/B/O NT_028392AL356299335367513RH3900720197.34    1  
S/G/Y/R/B/O NT_028392AL356299335368613RH3897520197.65    1  
S/G/Y/R/B/O NT_028392AL109923337648463RH2637220195.77    1  
S/G/Y/R/B/O NT_028392AL136173337972283RH4178120197.52    1  
S/G/Y/R/B/O NT_028392AL118520338165533RH4699020207.61    1  
S/G/Y/R/B/O NT_028392AL118520338172243RH9362420197.20    1  


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL109824339693603RH6411520203.62  20211.501 AL109824.24
S/G/Y/R/B/O NT_028392AL109824339696283RH1698820200.16    1 AL109824.24
S/G/Y/R/B/O NT_028392AL109824339714233RH2539520204.24    1  
S/G/Y/R/B/O NT_028392AL109824339715063RH7846520197.34    1  
S/G/Y/R/B/O NT_028392AL109824339978363RH2855820206.96    1  
S/G/Y/R/B/O NT_028392AL109824340156933RH2657020206.96    1  
S/G/Y/R/B/O NT_028392AL049709341017443RH1818420200.16    1  
S/G/Y/R/B/O NT_028392AL049709341065293RH6405520203.30  20210.901 AL049709.18
S/G/Y/R/B/O NT_028392AL049709341187413RH7970920207.55    1  
S/G/Y/R/B/O NT_028392AL049709341471523RH6571920206.96    1  
S/G/Y/R/B/O NT_028392AL049709341759483RH3748320200.26    1 AL049709.18
S/G/Y/R/B/O NT_028392AL049709341759483RH35026  201894.00  1 AL049709.18
S/G/Y/R/B/O NT_028392AL133324341841633RH1218420203.30    1  
S/G/Y/R/B/O NT_028392AL133324341849303RH1729920200.16    1 AL133324.13
S/G/Y/R/B/O NT_028392AL132825342589423RH1594620200.06    1  
S/G/Y/R/B/O NT_028392AL132825342596753RH1217820200.16    1  
S/G/Y/R/B/O NT_028392AL132825343060673RH6609720197.20    1  
S/G/Y/R/B/O NT_028392AL135844343719333RH3903320200.16    2  
S/G/Y/R/B/O NT_028392AL356652344333583RH3896620203.62    1  
S/G/Y/R/B/O NT_028392AL356652344333803RH6955920200.16    1 AL356652.19
S/G/Y/R/B/O NT_028392AL356652344335723RH6403120197.34  20211.201 AL356652.19
S/G/Y/R/B/O NT_028392AL121753345315773RH2519820200.06    1  
S/G/Y/R/B/O NT_028392AL121753345335713RH1056520200.06    1 AL121753.30
S/G/Y/R/B/O NT_028392AL121753345351673RH5723020203.19201912.0020209.501  
S/G/Y/R/B/O NT_028392AL121753345589333RH2615620206.96    1  
S/G/Y/R/B/O NT_028392AL121753345591523RH1217920200.16    1  
S/G/Y/R/B/O NT_028392AL121753345598733RH3899020203.30    1  
S/G/Y/R/B/O NT_028392AL121753345687173RH4868720200.06    1  
S/G/Y/R/B/O NT_028392AL121752346020273RH6652620203.30    1  
S/G/Y/R/B/O NT_028392AL121752346630693RH7887120206.96    1  
S/G/Y/R/B/O NT_028392AL389874346658333          
S/G/Y/R/B/O NT_028392AL121586346895773RH6410920203.62    1 AL121586.31
S/G/Y/R/B/O NT_028392AL121586347678933RH7816520200.06    1  
S/G/Y/R/B/O NT_028392AL121586347681323RH2867520207.18    1  
S/G/Y/R/B/O NT_028392AL121586347770753RH10206520206.96    1  
S/G/Y/R/B/O NT_028392AL121586348069533WI-10856    20206.801 AL121586.31
S/G/Y/R/B/O NT_028392AL121586348095113RH3901720200.06    1  
S/G/Y/R/B/O NT_028392AL121586348137093RH9882220200.06    1  
S/G/Y/R/B/O NT_028392AL389875348295413          
S/G/Y/R/B/O NT_028392AL109827348824003RH1049720200.06    1 AL109827.8
S/G/Y/R/B/O NT_028392AL109827348824203SGC31802    20207.001  
S/G/Y/R/B/O NT_028392AL109827348838973RH2630320206.96    1  
S/G/Y/R/B/O NT_028392AL109827349064993RH6417220197.34201931.00  1 AL109827.8
S/G/Y/R/B/O NT_028392AL109827349081233RH6404020203.30  20208.601 AL109827.8
S/G/Y/R/B/O NT_028392AL109827349083753RH37762  201940.00  1 AL109827.8
S/G/Y/R/B/O NT_028392AL109827349084553RH6609820200.06    1  
S/G/Y/R/B/O NT_028392AL109827349085203RH2502320200.06    1  
S/G/Y/R/B/O NT_028392AL109827349253153RH6404420200.16201940.0020206.701 AL109827.8
S/G/Y/R/B/O NT_028392AL357374349571463RH4178620203.60    1  
S/G/Y/R/B/O NT_028392AL357374349571933RH3894520200.16    1  


  NT_028392 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_028392AL357374349877923RH9248120203.30    1  
S/G/Y/R/B/O NT_028392AL357374349912583RH3899920203.30    1  
S/G/Y/R/B/O NT_028392AL357374349953783RH2642020197.13    1  
S/G/Y/R/B/O NT_028392AL356422350311773RH9835720203.30    1  
S/G/Y/R/B/O NT_028392AL078461350960263WI-4482    20206.801 AL078461.38
S/G/Y/R/B/O NT_028392AL078461351008303AFM240WF8    20211.001 AL078461.38
S/G/Y/R/B/O NT_028392AL109965352049943RH1599520207.61    1  
S/G/Y/R/B/O NT_028392AL109965352055723RH1218920197.65    1  
S/G/Y/R/B/O NT_028392AL109965352055833RH1150720197.34    1  
S/G/Y/R/B/O NT_028392AL109965352056323RH2521020203.92    1  
S/G/Y/R/B/O NT_028392AL359828352514523          
S/G/Y/R/B/O NT_028392AL035420353020233RH1184120197.42    1  
S/G/Y/R/B/O NT_028392AL121895354875563RH1220220207.94    1  
S/G/Y/R/B/O NT_028392AL121895354878413RH6416120205.17    1  
S/G/Y/R/B/O NT_028392AL121895354887593RH5736420207.39  20213.601 AL121895.26
S/G/Y/R/B/O NT_028392AL121895355130123RH8049620205.60    1  
S/G/Y/R/B/O NT_028392AL121895355421123WI-6464    20214.301 AL121895.26
S/G/Y/R/B/O NT_028392AL512784355516903          
S/G/Y/R/B/O NT_028392 - RH1074120203.09    1 AC026539.2, AL031662.26
S/G/Y/R/B/O NT_028392 - RH1628920195.87    0  
S/G/Y/R/B/O NT_028392 - RH1659120193.00    0  
S/G/Y/R/B/O NT_028392 - RH5725920191.21  20196.600  
S/G/Y/R/B/O NT_028392 - IB290    20206.901 AC026539.2, AL031662.26
S/G/Y/R/B/O NT_028392 - RH6417420191.45201701.00  0  
S/G/Y/R/B/O NT_028392 - RH6606720207.83    0  
S/G/Y/R/B/O NT_028392 - RH7924820206.96    0  
S/G/Y/R/B/O NT_028392 - RH8008420171.91    0  
S/G/Y/R/B/O NT_028392 - RH9146420203.09    1  
S/G/Y/R/B/O NT_028392 - RH9336720191.21    0  
S/G/Y/R/B/O NT_028392 - RH9915320193.00    0