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Line color code:
- White: overlap with immediately succeeding clone
- Green: overlap with clone in same contig
- Pink: overlap with clone in same chromosome, different contig
- Red: overlap with clone on different chromosome
- Yellow: overlap with clone not used in assembly
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Links | Contig1 | Acc1 | Start1 | Phs | Chr2 | Contig2 | Acc2 | Start2 | Phs | Strong Overlap | Medium Overlap | Weak Overlap | Total Overlap |
S/G/Y/R/B/O |
NT_037537 | AC015976 | 171452811 | 3 | chr2 | NT_037537 | AC104801 | 171622363 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC015976 | 171452811 | 3 |   |   | AC023925 | 171104631 | | 48615 | 0 | 0 | 48615 |
S/G/Y/R/B/O |
NT_037537 | AC015976 | 171452811 | 3 |   |   | AC053469 | 171104631 | | 23191 | 5273 | 6533 | 34997 |
S/G/Y/R/B/O |
NT_037537 | AC104801 | 171622363 | 3 | chr2 | NT_037537 | AC104088 | 171753007 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC104801 | 171622363 | 3 |   |   | AC023925 | 171452811 | | 94882 | 0 | 0 | 94882 |
S/G/Y/R/B/O |
NT_037537 | AC104801 | 171622363 | 3 |   |   | AC053469 | 171452811 | | 33453 | 24202 | 21390 | 79045 |
S/G/Y/R/B/O |
NT_037537 | AC104088 | 171753007 | 3 | chr2 | NT_037537 | AC078883 | 171909753 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037537 | AC078883 | 171909753 | 3 | chr2 | NT_037537 | AC104659 | 172077339 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037537 | AC104659 | 172077339 | 3 | chr2 | NT_037537 | AC093818 | 172079333 | 3 | 0 | 0 | 1567 | 1567 |
S/G/Y/R/B/O |
NT_037537 | AC093818 | 172079333 | 3 | chr2 | NT_037537 | AC018712 | 172123657 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC018712 | 172123657 | 3 | chr2 | NT_037537 | AC009484 | 172278490 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_037537 | AC009484 | 172278490 | 3 | chr2 | NT_037537 | AC104086 | 172484364 | 3 | 0 | 1998 | 0 | 1998 |
S/G/Y/R/B/O |
NT_037537 | AC009484 | 172278490 | 3 |   |   | AC016789 | 172079333 | | 16268 | 0 | 1264 | 17532 |
S/G/Y/R/B/O |
NT_037537 | AC009484 | 172278490 | 3 |   |   | AC067851 | 172123657 | | 88572 | 15585 | 14417 | 118574 |
S/G/Y/R/B/O |
NT_037537 | AC009484 | 172278490 | 3 |   |   | AC090040 | 172123657 | | 30483 | 10072 | 5759 | 46314 |
S/G/Y/R/B/O |
NT_037537 | AC104086 | 172484364 | 3 | chr2 | NT_037537 | AC019046 | 172501858 | 3 | 0 | 1997 | 0 | 1997 |
S/G/Y/R/B/O |
NT_037537 | AC104086 | 172484364 | 3 |   |   | AC016789 | 172278490 | | 18152 | 967 | 0 | 19119 |
S/G/Y/R/B/O |
NT_037537 | AC104086 | 172484364 | 3 |   |   | AC067851 | 172501858 | | 12311 | 4715 | 0 | 17026 |
S/G/Y/R/B/O |
NT_037537 | AC019046 | 172501858 | 3 | chr2 | NT_037537 | AC013461 | 172677561 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC019046 | 172501858 | 3 |   |   | AC016789 | 172677561 | | 115198 | 3179 | 20179 | 138556 |
S/G/Y/R/B/O |
NT_037537 | AC019046 | 172501858 | 3 |   |   | AC067851 | 172677561 | | 16123 | 2455 | 0 | 18578 |
S/G/Y/R/B/O |
NT_037537 | AC013461 | 172677561 | 3 | chr2 | NT_037537 | AC092573 | 172782682 | 3 | 0 | 1984 | 0 | 1984 |
S/G/Y/R/B/O |
NT_037537 | AC092573 | 172782682 | 3 | chr2 | NT_037537 | AC073465 | 172951963 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC092573 | 172782682 | 3 |   |   | AC011667 | 172782682 | | 77154 | 8780 | 10459 | 96393 |
S/G/Y/R/B/O |
NT_037537 | AC092573 | 172782682 | 3 |   |   | AC012052 | 172782682 | | 76279 | 12407 | 10724 | 99410 |
S/G/Y/R/B/O |
NT_037537 | AC073465 | 172951963 | 3 | chr2 | NT_037537 | AC013410 | 173085715 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC073465 | 172951963 | 3 |   |   | AC011667 | 172951963 | | 66673 | 0 | 0 | 66673 |
S/G/Y/R/B/O |
NT_037537 | AC073465 | 172951963 | 3 |   |   | AC012052 | 172951963 | | 85989 | 639 | 0 | 86628 |
S/G/Y/R/B/O |
NT_037537 | AC013410 | 173085715 | 3 | chr2 | NT_037537 | AC106900 | 173284615 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC013410 | 173085715 | 3 |   |   | AC018930 | 172782682 | | 118399 | 0 | 6181 | 124580 |
S/G/Y/R/B/O |
NT_037537 | AC106900 | 173284615 | 3 | chr2 | NT_037537 | AC093399 | 173432110 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_037537 | AC093399 | 173432110 | 3 | chr2 | NT_037537 | AC016737 | 173463581 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC016737 | 173463581 | 3 | chr2 | NT_037537 | AC013467 | 173657666 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037537 | AC013467 | 173657666 | 3 | chr2 | NT_037537 | AC018470 | 173830432 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037537 | AC018470 | 173830432 | 3 | chr2 | NT_037537 | AC010894 | 174004669 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC010894 | 174004669 | 3 | chr2 | NT_037537 | AC104595 | 174184332 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC104595 | 174184332 | 3 | chr2 | NT_037537 | AC018890 | 174227666 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_037537 | AC018890 | 174227666 | 3 | chr2 | NT_037537 | AC020596 | 174399630 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC018890 | 174227666 | 3 |   |   | AC025927 | 174399630 | | 107819 | 10160 | 22779 | 140758 |
S/G/Y/R/B/O |
NT_037537 | AC020596 | 174399630 | 3 | chr2 | NT_037537 | AC007435 | 174529653 | 3 | 59224 | 0 | 0 | 59224 |
S/G/Y/R/B/O |
NT_037537 | AC007435 | 174529653 | 3 | chr2 | NT_037537 | AC074291 | 174648771 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC007435 | 174529653 | 3 |   |   | AC074393 | 174648771 | | 100732 | 0 | 12794 | 113526 |
S/G/Y/R/B/O |
NT_037537 | AC007435 | 174529653 | 3 |   |   | AL161794 | 174648771 | | 95997 | 0 | 27439 | 123436 |
S/G/Y/R/B/O |
NT_037537 | AC074291 | 174648771 | 3 | chr2 | NT_037537 | AC131958 | 174658568 | 3 | 0 | 1999 | 0 | 1999 |
S/G/Y/R/B/O |
NT_037537 | AC131958 | 174658568 | 3 | chr2 | NT_037537 | AC096649 | 174688052 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_037537 | AC131958 | 174658568 | 3 |   |   | AC011574 | 174658568 | | 26803 | 0 | 2941 | 29744 |
S/G/Y/R/B/O |
NT_037537 | AC096649 | 174688052 | 3 | chr2 | NT_037537 | AC093459 | 174858769 | 3 | 0 | 1995 | 0 | 1995 |
S/G/Y/R/B/O |
NT_037537 | AC096649 | 174688052 | 3 |   |   | AC011574 | 174688052 | | 87592 | 4234 | 1184 | 93010 |
S/G/Y/R/B/O |
NT_037537 | AC096649 | 174688052 | 3 |   |   | AC012273 | 174688052 | | 19225 | 0 | 0 | 19225 |
S/G/Y/R/B/O |
NT_037537 | AC093459 | 174858769 | 3 | chr2 | NT_037537 | AC069384 | 174933296 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC093459 | 174858769 | 3 |   |   | AC012273 | 174658568 | | 76483 | 0 | 0 | 76483 |
S/G/Y/R/B/O |
NT_037537 | AC069384 | 174933296 | 3 | chr2 | NT_037537 | AC103916 | 175098271 | 3 | 2000 | 0 | 0 | 2000 |
S/G/Y/R/B/O |
NT_037537 | AC103916 | 175098271 | 3 | chr2 | NT_037537 | AC016761 | 175178982 | 3 | 0 | 0 | 0 | 0 |
S/G/Y/R/B/O |
NT_037537 | AC016761 | 175178982 | 3 | chr2 | NT_037537 | AC016751 | 175336326 | 3 | 0 | 0 | 200 | 200 |
S/G/Y/R/B/O |
NT_037537 | AC016751 | 175336326 | 3 | chr2 | NT_037537 | AC016915 | 175512505 | 3 | 0 | 0 | 1687 | 1687 |
S/G/Y/R/B/O |
NT_037537 | AC016915 | 175512505 | 3 | chr2 | NT_037537 | AC009336 | 175543886 | 3 | 0 | 1996 | 0 | 1996 |
S/G/Y/R/B/O |
NT_037537 | AC009336 | 175543886 | 3 |   |   |   |   |   |   |   |   |   |
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