This directory contains a dump of the UCSC genome annotation database for the
    Jan. 2020 (ASM985889v3/wuhCor1) assembly of the wuhan seafood market pneumonia virus genome
    (wuhCor1, 2019-nCoV) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/n/a
    https://www.ncbi.nlm.nih.gov/genome/assembly/15851418
    https://www.ncbi.nlm.nih.gov/bioproject/485481
    https://www.ncbi.nlm.nih.gov/biosample/n/a

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=wuhCor1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/wuhCor1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql wuhCor1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql wuhCor1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                                 Last modified      Size  Description
Parent Directory - windowmaskerSdust.txt.gz 29-Jan-2020 13:21 345 windowmaskerSdust.sql 29-Jan-2020 13:21 1.5K ucscToRefSeq.txt.gz 29-Jan-2020 12:01 63 ucscToRefSeq.sql 29-Jan-2020 12:01 1.4K ucscToINSDC.txt.gz 29-Jan-2020 12:01 67 ucscToINSDC.sql 29-Jan-2020 12:01 1.4K trackDb.txt.gz 20-Nov-2020 14:40 122K trackDb.sql 20-Nov-2020 14:40 2.0K tableList.txt.gz 22-Nov-2020 03:16 2.3K tableList.sql 22-Nov-2020 03:16 1.5K tableDescriptions.txt.gz 28-Jul-2020 02:04 4.7K tableDescriptions.sql 28-Jul-2020 02:04 1.4K strainPhyloP119way.txt.gz 30-Apr-2020 21:44 1.0K strainPhyloP119way.sql 30-Apr-2020 21:44 1.8K strainPhyloP44way.txt.gz 17-Mar-2020 17:52 1.0K strainPhyloP44way.sql 17-Mar-2020 17:52 1.8K strainPhastConsElements119way.txt.gz 30-Apr-2020 21:42 12K strainPhastConsElements119way.sql 30-Apr-2020 21:42 1.6K strainPhastConsElements44way.txt.gz 17-Mar-2020 16:52 5.0K strainPhastConsElements44way.sql 17-Mar-2020 16:52 1.6K strainPhastCons119way.txt.gz 30-Apr-2020 21:43 862 strainPhastCons119way.sql 30-Apr-2020 21:43 1.8K strainPhastCons44way.txt.gz 17-Mar-2020 16:54 830 strainPhastCons44way.sql 17-Mar-2020 16:54 1.8K strainName119wayFrames.txt.gz 30-Apr-2020 21:46 219 strainName119wayFrames.sql 30-Apr-2020 21:46 1.8K strainName119way.txt.gz 30-Apr-2020 21:38 73 strainName119way.sql 30-Apr-2020 21:38 1.5K strainName44wayFrames.txt.gz 17-Mar-2020 17:47 218 strainName44wayFrames.sql 17-Mar-2020 17:47 1.8K strainName44way.txt.gz 17-Mar-2020 17:00 71 strainName44way.sql 17-Mar-2020 17:00 1.5K simpleRepeat.txt.gz 29-Jan-2020 12:05 86 simpleRepeat.sql 29-Jan-2020 12:05 1.9K seq.txt.gz 09-Apr-2020 16:18 3.1K seq.sql 09-Apr-2020 16:18 1.5K rnaStructRangan.txt.gz 04-May-2020 12:51 3.8K rnaStructRangan.sql 04-May-2020 12:51 1.5K rfam.txt.gz 27-Apr-2020 15:01 139 rfam.sql 27-Apr-2020 15:01 1.5K primers.txt.gz 14-Apr-2020 04:40 1.2K primers.sql 14-Apr-2020 04:40 2.1K ncbiGene.txt.gz 29-Jan-2020 13:54 238 ncbiGene.sql 29-Jan-2020 13:54 1.7K multiz7wayFrames.txt.gz 13-May-2020 11:30 204 multiz7wayFrames.sql 13-May-2020 11:30 1.7K multiz7way.txt.gz 13-May-2020 10:49 67 multiz7way.sql 13-May-2020 10:49 1.5K microdel.txt.gz 20-May-2020 06:54 1.0K microdel.sql 20-May-2020 06:54 1.6K mafSnpStrainName119way.txt.gz 02-May-2020 10:23 1.0M mafSnpStrainName119way.sql 02-May-2020 10:23 1.6K mafSnpStrainName44way.txt.gz 02-May-2020 10:13 858K mafSnpStrainName44way.sql 02-May-2020 10:13 1.6K mafSnp7way.txt.gz 13-May-2020 11:34 94K mafSnp7way.sql 13-May-2020 11:34 1.5K history.txt.gz 30-Jan-2020 11:00 421 history.sql 30-Jan-2020 11:00 1.6K hgFindSpec.txt.gz 22-Nov-2020 03:34 518 hgFindSpec.sql 22-Nov-2020 03:34 1.7K grp.txt.gz 29-Mar-2020 02:07 246 grp.sql 29-Mar-2020 02:07 1.3K gold.txt.gz 29-Jan-2020 11:07 60 gold.sql 29-Jan-2020 11:07 1.7K genscanSubopt.txt.gz 29-Jan-2020 13:25 140 genscanSubopt.sql 29-Jan-2020 13:25 1.6K genscan.txt.gz 29-Jan-2020 13:25 118 genscan.sql 29-Jan-2020 13:25 1.7K gc5BaseBw.txt.gz 29-Jan-2020 13:00 66 gc5BaseBw.sql 29-Jan-2020 13:00 1.3K gap.txt.gz 29-Jan-2020 11:07 28 gap.sql 29-Jan-2020 11:07 1.6K extFile.txt.gz 21-Jun-2020 08:31 173 extFile.sql 21-Jun-2020 08:31 1.4K cytoBandIdeo.txt.gz 29-Jan-2020 13:00 63 cytoBandIdeo.sql 29-Jan-2020 13:00 1.5K crisprDet.txt.gz 27-Mar-2020 07:50 243 crisprDet.sql 27-Mar-2020 07:50 2.1K cpgIslandExtUnmasked.txt.gz 29-Jan-2020 11:34 97 cpgIslandExtUnmasked.sql 29-Jan-2020 11:34 1.7K cpgIslandExt.txt.gz 29-Jan-2020 13:23 89 cpgIslandExt.sql 29-Jan-2020 13:23 1.7K chromInfo.txt.gz 29-Jan-2020 16:02 72 chromInfo.sql 29-Jan-2020 16:02 1.4K chromAlias.txt.gz 29-Jan-2020 11:54 79 chromAlias.sql 29-Jan-2020 11:54 1.4K bigFiles.txt.gz 22-Nov-2020 03:16 69 bigFiles.sql 22-Nov-2020 03:16 1.4K augustusGene.txt.gz 29-Jan-2020 13:32 164 augustusGene.sql 29-Jan-2020 13:32 1.9K