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Note: this listing as of 2025-05-06, this is the
'VGP freeze1' version.
See also, the github 'vgp-phase1' project page.
And this page revision history
To download all files from this set, 2bit sequence, fa.gz sequence and repeatModeler families.fa.gz: (967 Gb)
rsync -a -P -L \
rsync://hgdownload.soe.ucsc.edu/hubs/VGP/alignment/ ./alignment/
To download only the fasta fa.gz files from this set: (520 Gb)
rsync -a -P -L --exclude "*.2bit" --exclude "*.families.fa.gz" \
rsync://hgdownload.soe.ucsc.edu/hubs/VGP/alignment/ ./alignment/
To download only the sequence .2bit files from this set: (447 Gb)
rsync -a -P -L --exclude "*.fa.gz" \
rsync://hgdownload.soe.ucsc.edu/hubs/VGP/alignment/ ./alignment/
This table in a tab-separated text file:
vgp.alignment.set.metaData.txt.
Click on the column headers of this table to sort on that column.
The directory hierarchy you obtain from the rsync is two levels of directories:
| count | accession | NCBI assembly | scientific name | common name | taxId | BioSample | asmType | asmLevel | asmDate | submitter | asmSize | masked % | primary/ secondary |
VGP clade |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GCA_002915635.3 | GCA_002915635.3_AmbMex60DD | Ambystoma mexicanum | axolotl (DD151 2021) | 8296 | SAMN06554622 | haploid | Chromosome | 01 Apr 2021 | Max Planck Society/University of Kentucky | 28,206,905,576 | 68.20 | secondary | amphibians |
| 2 | GCA_003287225.2 | GCA_003287225.2_phaCin_HiC | Phascolarctos cinereus | koala (Bilbo 61053 2022) | 38626 | SAMN06198159 | haploid | Scaffold | 12 Dec 2022 | The Earlham Institute | 3,192,631,935 | 39.25 | primary | mammals |
| 3 | GCA_003369685.2 | GCA_003369685.2_UOA_Angus_1 | Bos indicus x Bos taurus | hybrid cattle (Angus x Brahman F1 Angus haplotype 2018) | 30522 | SAMN08473802 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Nov 2018 | University of Adelaide | 2,580,764,822 | 47.42 | secondary | mammals |
| 4 | GCA_003957565.4 | GCA_003957565.4_bTaeGut1.4.pri | Taeniopygia guttata | zebra finch (v1.4 Blue55 primary hap 2021 genbank) | 59729 | SAMN02981239 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 May 2021 | Vertebrate Genomes Project | 1,056,271,264 | 20.99 | secondary | birds |
| 5 | GCA_005190385.3 | GCA_005190385.3_NGI_Narwhal_2 | Monodon monoceros | narwhal (Baffin Bay Population NGI 2022) | 40151 | SAMN10872456 | haploid | Scaffold | 09 Nov 2022 | The Narwhal Genome Initiative | 2,341,954,608 | 37.30 | primary | mammals |
| 6 | GCA_008658365.1 | GCA_008658365.1_bAlcTor1_primary | Alca torda | razorbill (2006_11_07_Graehlm_vinge_78 2019) | 28689 | SAMN12292087 | haploid (principal pseudohaplotype of diploid) | Chromosome | 10 Oct 2019 | G10K | 1,178,492,568 | 20.12 | primary | birds |
| 7 | GCA_008822115.3 | GCA_008822115.3_bTaeGut2.mat.v3 | Taeniopygia guttata | zebra finch (v3 Blue55 maternal 2020) | 59729 | SAMN09946140 | haploid (maternal haplotype of diploid) | Chromosome | 21 Feb 2020 | Vertebrate Genomes Project | 995,952,786 | 10.60 | secondary | birds |
| 8 | GCA_009764595.1 | GCA_009764595.1_bGeoTri1.pri | Geothlypis trichas | common yellowthroat (primary hap 2019) | 135433 | SAMN12631222 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Dec 2019 | G10K | 1,078,128,490 | 10.78 | primary | birds |
| 9 | GCA_009769465.1 | GCA_009769465.1_bTauEry1.pri | Tauraco erythrolophus | red-crested turaco (primary hap 2019) | 121530 | SAMN12621036 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Dec 2019 | Vertebrate Genomes Project | 1,252,271,553 | 12.01 | primary | birds |
| 10 | GCA_009769525.1 | GCA_009769525.1_bPteGut1.pri | Pterocles gutturalis | yellow-throated sandgrouse (primary hap 2019) | 240206 | SAMN12623217 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Dec 2019 | Vertebrate Genomes Project | 1,127,422,757 | 8.95 | primary | birds |
| 11 | GCA_009769605.1 | GCA_009769605.1_bBucAby1.pri | Bucorvus abyssinicus | Abyssinian ground-hornbill (primary hap 2019) | 153643 | SAMN12614799 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Dec 2019 | Vertebrate Genomes Project | 1,132,597,561 | 8.35 | primary | birds |
| 12 | GCA_009819595.1 | GCA_009819595.1_bMerNub1.pri | Merops nubicus | carmine bee-eater (primary hap 2019) | 57421 | SAMN12621035 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,149,356,202 | 11.68 | primary | birds |
| 13 | GCA_009819605.1 | GCA_009819605.1_bSteHir1.pri | Sterna hirundo | common tern (primary hap 2019) | 108405 | SAMN12369541 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,229,972,541 | 9.95 | primary | birds |
| 14 | GCA_009819775.1 | GCA_009819775.1_bPhoRub2.pri | Phoenicopterus ruber ruber | American flamingo (primary hap 2019) | 9218 | SAMN12614931 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,246,226,932 | 9.67 | primary | birds |
| 15 | GCA_009819825.1 | GCA_009819825.1_bCarCri1.pri | Cariama cristata | red-legged seriema (primary hap 2019) | 54380 | SAMN12614807 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,215,245,693 | 8.73 | primary | birds |
| 16 | GCA_009914755.4 | GCA_009914755.4_T2T-CHM13v2.0 | Homo sapiens | human T2T CHM13 v2.0 (2022) | 9606 | (n/a) | haploid | Complete Genome | 24 Jan 2022 | T2T Consortium | 3,117,292,070 | 54.59 | primary | primates |
| 17 | GCA_011004875.1 | GCA_011004875.1_bBalReg1.pri | Balearica regulorum gibbericeps | East African grey crowned-crane (primary hap 2020) | 100784 | SAMN12615749 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Mar 2020 | Vertebrate Genomes Project | 1,221,051,782 | 9.83 | primary | birds |
| 18 | GCA_011078405.1 | GCA_011078405.1_mCalJac1.mat | Callithrix jacchus | white-tufted-ear marmoset (maternal 2020) | 9483 | SAMN12368443 | haploid (maternal haplotype of diploid) | Chromosome | 10 Mar 2020 | Vertebrate Genomes Project | 2,811,151,840 | 49.86 | secondary | primates |
| 19 | GCA_011100555.2 | GCA_011100555.2_mCalJa1.2.pat.X | Callithrix jacchus | white-tufted-ear marmoset (v1.2 2021 genbank) | 9483 | SAMN12368443 | haploid | Chromosome | 28 Apr 2021 | Vertebrate Genomes Project | 2,874,881,015 | 47.55 | secondary | mammals |
| 20 | GCA_011762505.3 | GCA_011762505.3_mArvNil1.pat.X | Arvicanthis niloticus | African grass rat (v3 paternal hap 2024) | 61156 | SAMN12611849 | haploid | Chromosome | 22 Oct 2024 | Vertebrate Genomes Project | 2,496,777,707 | 33.78 | primary | mammals |
| 21 | GCA_011762515.1 | GCA_011762515.1_mTurTru1.pat | Tursiops truncatus | common bottlenose dolphin (paternal 2020) | 9739 | SAMN12326775 | haploid (paternal haplotype of diploid) | Scaffold | 25 Mar 2020 | Vertebrate Genomes Project | 2,378,995,196 | 45.09 | secondary | mammals |
| 22 | GCA_012275275.1 | GCA_012275275.1_bMelUnd1.pat | Melopsittacus undulatus | budgerigar (paternal hap 2020) | 13146 | SAMN12623090 | haploid | Scaffold | 13 Apr 2020 | Vertebrate Genomes Project | 1,124,753,724 | 11.47 | secondary | birds |
| 23 | GCA_013358685.1 | GCA_013358685.1_fAntMac1.pri | Antennarius maculatus | warty frogfish (primary hap 2020) | 882753 | SAMN12623626 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jun 2020 | Vertebrate Genomes Project | 549,949,511 | 25.70 | primary | fish |
| 24 | GCA_013358815.1 | GCA_013358815.1_fEleEle1.pri | Electrophorus electricus | electric eel (primary hap 2020 genbank) | 8005 | SAMN12623625 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Jun 2020 | Vertebrate Genomes Project | 589,376,265 | 24.89 | secondary | fish |
| 25 | GCA_014706295.1 | GCA_014706295.1_ASM1470629v1 | Lycocorax pyrrhopterus obiensis | Obi paradise-crow (lycPyr6 2020) | 2767082 | SAMN15881065 | haploid | Scaffold | 23 Sep 2020 | Uppsala University | 1,107,771,238 | 11.60 | primary | birds |
| 26 | GCA_014839685.1 | GCA_014839685.1_fAnaAna1.pri | Anableps anableps | largescale foureyes (primary hap 2020) | 195821 | SAMN12623628 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Oct 2020 | Vertebrate Genomes Project | 867,632,993 | 38.75 | primary | fish |
| 27 | GCA_014839755.1 | GCA_014839755.1_bSylBor1.pri | Sylvia borin | garden warbler (primary hap 2020) | 73324 | SAMN12618613 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Oct 2020 | Vertebrate Genomes Project | 1,045,652,180 | 9.11 | primary | birds |
| 28 | GCA_014839995.1 | GCA_014839995.1_fXenCan1.pri | Xenentodon cancila | freshwater garfish (primary hap 2020) | 129108 | SAMN12623622 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Oct 2020 | Vertebrate Genomes Project | 736,214,936 | 30.53 | primary | fish |
| 29 | GCA_015852565.1 | GCA_015852565.1_bf_hap-2 | Branchiostoma floridae x Branchiostoma japonicum | lancelets B.floridae x B.japonicum (bjbf 2020) | 2700039 | SAMN13896449 | haploid | Chromosome | 09 Dec 2020 | University of Vienna | 490,782,628 | 38.40 | primary | invertebrate |
| 30 | GCA_016695395.2 | GCA_016695395.2_mHomSap3.mat | Homo sapiens | human (mHomSap3 WGS:JACSEX01 2021) | 9606 | SAMN12568975 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Jan 2021 | Vertebrate Genomes Project | 2,902,214,236 | 52.22 | secondary | primates |
| 31 | GCA_016700455.2 | GCA_016700455.2_mHomSap3.pat | Homo sapiens | human (WGS:JACSEW01 2021 alternate hap) | 9606 | SAMN12568975 | alternate-pseudohaplotype | Chromosome | 19 Jan 2021 | Vertebrate Genomes Project | 2,744,463,177 | 51.25 | secondary | primates |
| 32 | GCA_016904835.1 | GCA_016904835.1_bAcaChl1.pri | Acanthisitta chloris | rifleman (primary hap 2021) | 57068 | SAMN16442762 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 Feb 2021 | Vertebrate Genomes Project | 1,077,387,582 | 10.83 | primary | birds |
| 33 | GCA_017639485.1 | GCA_017639485.1_bPluApr1.pri | Pluvialis apricaria | European golden plover (primary hap 2021) | 670352 | SAMN18353970 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 1,247,767,512 | 10.21 | primary | birds |
| 34 | GCA_017639555.1 | GCA_017639555.1_bCicMag1.pri | Ciconia maguari | maguari stork (primary hap 2021) | 52777 | SAMN18353822 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 1,239,437,416 | 8.11 | primary | birds |
| 35 | GCA_017639645.1 | GCA_017639645.1_bFalNau1.mat | Falco naumanni | lesser kestrel (alternate hap 2021) | 148594 | SAMN16870685 | alternate-pseudohaplotype | Scaffold | 30 Mar 2021 | Vertebrate Genomes Project | 1,156,765,323 | 9.26 | secondary | birds |
| 36 | GCA_017639675.1 | GCA_017639675.1_fAplTae1.pri | Aplochiton taeniatus | peladilla (primary hap 2021) | 946358 | SAMN12623621 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 461,946,147 | 20.73 | primary | fish |
| 37 | GCA_019207075.1 | GCA_019207075.1_Bb-hap | Branchiostoma floridae x Branchiostoma belcheri | lancelets B.floridae x B.belcheri (bbbf 2021) | 2700040 | SAMN13907882 | haploid | Chromosome | 13 Jul 2021 | University of Vienna | 405,532,174 | 36.80 | primary | invertebrate |
| 38 | GCA_019677235.1 | GCA_019677235.1_HNU_Msal_1.0 | Micropterus salmoides | largemouth bass (2-A1 2021) | 27706 | SAMN15783178 | haploid | Chromosome | 19 Aug 2021 | Henan Normal University, Pearl River Fisheries Research Institute, CAFS | 877,669,248 | 29.68 | primary | fish |
| 39 | GCA_020510985.1 | GCA_020510985.1_fPhoLeu1.pri | Pholidichthys leucotaenia | convict blenny (primary hap 2021) | 390368 | SAMN12623617 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Oct 2021 | G10K | 6,032,307,556 | 85.55 | primary | fish |
| 40 | GCA_020740715.1 | GCA_020740715.1_mJacJac1.pat.decon | Jaculus jaculus | lesser Egyptian jerboa (alternate hap 2021) | 51337 | SAMN20391724 | alternate-pseudohaplotype | Scaffold | 03 Nov 2021 | Vertebrate Genomes Project | 2,595,216,862 | 42.83 | secondary | mammals |
| 41 | GCA_020745685.1 | GCA_020745685.1_fTauAds1.pri.cur | Tautogolabrus adspersus | cunner (primary hap 2021) | 34787 | SAMN22589422 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2021 | Vertebrate Genomes Project | 723,582,185 | 30.38 | primary | fish |
| 42 | GCA_020745705.1 | GCA_020745705.1_bHemCom1.pri.cur | Hemiprocne comata | whiskered treeswift (primary hap 2021) | 243314 | SAMN22588383 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2021 | Vertebrate Genomes Project | 1,164,813,063 | 12.42 | primary | birds |
| 43 | GCA_020745765.1 | GCA_020745765.1_sHemOce1.mat.decon | Hemiscyllium ocellatum | epaulette shark (alternate hap sHemOce1 2021) | 170820 | SAMN22550098 | alternate-pseudohaplotype | Scaffold | 05 Nov 2021 | Vertebrate Genomes Project | 4,149,461,884 | 44.34 | secondary | sharks |
| 44 | GCA_020745775.1 | GCA_020745775.1_bTheCae1.pri.cur | Theristicus caerulescens | plumbeous ibis (primary hap 2021) | 1118847 | SAMN22550094 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2021 | Vertebrate Genomes Project | 1,203,372,763 | 8.30 | primary | birds |
| 45 | GCA_020746105.1 | GCA_020746105.1_bTroSur1.pri.cur | Trogon surrucura | Suruca trogon (primary hap 2021) | 297711 | SAMN22550082 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2021 | Vertebrate Genomes Project | 1,165,749,515 | 12.78 | primary | birds |
| 46 | GCA_020800305.1 | GCA_020800305.1_bPorHoc1.mat.Z.cur | Porphyrio hochstetteri | South Island takahe (primary hap 2021) | 439704 | SAMN22550412 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Nov 2021 | Vertebrate Genomes Project | 1,270,294,353 | 18.07 | primary | birds |
| 47 | GCA_020801775.1 | GCA_020801775.1_bPorHoc1.pat.decon | Porphyrio hochstetteri | South Island takahe (alternate hap 2021) | 439704 | SAMN22550412 | alternate-pseudohaplotype | Scaffold | 08 Nov 2021 | Vertebrate Genomes Project | 1,245,128,614 | 16.48 | secondary | birds |
| 48 | GCA_020826835.1 | GCA_020826835.1_mDicBic1.pat.decon | Diceros bicornis minor | black rhinoceros (alternate hap 2021) | 77932 | SAMN22047685 | alternate-pseudohaplotype | Scaffold | 10 Nov 2021 | Vertebrate Genomes Project | 3,044,793,931 | 45.90 | secondary | mammals |
| 49 | GCA_021292165.1 | GCA_021292165.1_IOZ_Scro_1.0 | Shinisaurus crocodilurus | Chinese crocodile lizard (Guangxi GXDGS128 2021) | 52224 | SAMN19072228 | haploid | Chromosome | 28 Dec 2021 | Institute of Zoology, Chinese Academy of Sciences | 2,189,995,079 | 43.23 | primary | reptiles |
| 50 | GCA_022682395.2 | GCA_022682395.2_HLdesRot8B.1 | Desmodus rotundus | common vampire bat (v2 HL8 alternate hap 2022 genbank) | 9430 | SAMN24116476 | alternate-pseudohaplotype | Chromosome | 24 Mar 2022 | Bat1K | 1,969,917,660 | 31.12 | secondary | mammals |
| 51 | GCA_022682495.2 | GCA_022682495.2_HLdesRot8A.1 | Desmodus rotundus | common vampire bat (v2 HL8 primary hap 2022 genbank) | 9430 | SAMN24116476 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Mar 2022 | Bat1K | 2,119,704,833 | 32.64 | primary | mammals |
| 52 | GCA_023333525.2 | GCA_023333525.2_rAspTig1.1.pri | Aspidoscelis tigris stejnegeri | San Diegan tiger whiptail (v1.1 HBS 135688 primary hap 2025) | 2917703 | SAMN25872408 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Mar 2025 | UCLA | 1,673,115,766 | 39.12 | primary | reptiles |
| 53 | GCA_023637945.2 | GCA_023637945.2_bPhaSup1.pri | Phaethornis superciliosus | long-tailed hermit (v2 PSU5 primary hap 2025) | 46513 | SAMN23532249 | haploid | Chromosome | 03 Feb 2025 | The Max Planck Institute of Molecular Cell Biology and Genetics | 1,020,009,783 | 20.12 | primary | birds |
| 54 | GCA_023851605.1 | GCA_023851605.1_mTamTet1.pri | Tamandua tetradactyla | southern tamandua (mTamTet1 primary hap 2022) | 48850 | SAMN12612337 | haploid (principal pseudohaplotype of diploid) | Chromosome | 22 Jun 2022 | Vertebrate Genomes Project | 3,205,741,135 | 45.80 | primary | mammals |
| 55 | GCA_024206055.2 | GCA_024206055.2_GGswu | Gallus gallus | chicken (Huxu 2023) | 9031 | SAMN20717417 | haploid | Chromosome | 09 Feb 2023 | University of Vienna | 1,100,928,095 | 23.58 | secondary | birds |
| 56 | GCA_024256435.1 | GCA_024256435.1_CGAR_Hap1 | Clarias gariepinus | North African catfish (Netherlands MV-2021 primary hap 2022) | 13013 | SAMN27021044 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Jul 2022 | Leibniz Institute for Farm Animal Biology (FBN) | 972,641,408 | 39.05 | primary | fish |
| 57 | GCA_024256465.1 | GCA_024256465.1_CGAR_Hap2 | Clarias gariepinus | North African catfish (Netherlands MV-2021 alternate hap 2022) | 13013 | SAMN27021044 | alternate-pseudohaplotype | Chromosome | 13 Jul 2022 | Leibniz Institute for Farm Animal Biology (FBN) | 954,244,515 | 38.53 | secondary | fish |
| 58 | GCA_024294585.1 | GCA_024294585.1_rVipLat1.pri | Vipera latastei | Lataste's viper (primary hap 2022) | 246179 | SAMN28408464 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Jul 2022 | Vertebrate Genomes Project | 1,631,568,913 | 49.48 | primary | reptiles |
| 59 | GCA_024453875.1 | GCA_024453875.1_ASM2445387v1 | Scardinius erythrophthalmus | rudd (Europe DD20220513a primary hap 2022) | 58319 | SAMN28618522 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Jul 2022 | The Max Planck Institute of Molecular Cell Biology and Genetics | 1,135,838,337 | 49.98 | secondary | fish |
| 60 | GCA_024803745.1 | GCA_024803745.1_mThoBot1.0.p | Thomomys bottae | Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022) | 10013 | SAMN29044214 | haploid (principal pseudohaplotype of diploid) | Scaffold | 01 Sep 2022 | UCLA | 2,845,630,888 | 49.18 | secondary | mammals |
| 61 | GCA_025201965.1 | GCA_025201965.1_rGopFla2.pat.asm | Gopherus flavomarginatus | Mexican gopher tortoise (WGS:JAMKFD01 2022) | 286002 | SAMN24199108 | haploid (paternal haplotype of diploid) | Scaffold | 08 Sep 2022 | Vertebrate Genomes Project | 2,584,697,711 | 45.21 | secondary | reptiles |
| 62 | GCA_026018925.1 | GCA_026018925.1_mTupTan1 | Tupaia tana | large tree shrew (BS70 2022) | 70687 | SAMN07678117 | haploid | Scaffold | 07 Nov 2022 | University of California, Davis | 2,948,294,157 | 46.75 | primary | mammals |
| 63 | GCA_026229955.1 | GCA_026229955.1_mPerMan1.0.p | Peromyscus maniculatus sonoriensis | North American deer mouse (MVZ:Mamm:240117 primary hap 2022) | 372063 | SAMN29044276 | haploid (principal pseudohaplotype of diploid) | Scaffold | 14 Nov 2022 | UCLA | 2,847,741,276 | 48.05 | primary | mammals |
| 64 | GCA_026230045.1 | GCA_026230045.1_mCorTow1.0.hap2 | Corynorhinus townsendii | Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022) | 124745 | SAMN31536067 | haploid | Scaffold | 18 Nov 2022 | UCLA | 1,961,562,149 | 36.39 | secondary | mammals |
| 65 | GCA_026230055.1 | GCA_026230055.1_mCorTow1.0.hap1 | Corynorhinus townsendii | Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022) | 124745 | SAMN31536067 | haploid | Scaffold | 18 Nov 2022 | UCLA | 2,104,912,948 | 37.42 | primary | mammals |
| 66 | GCA_026419985.1 | GCA_026419985.1_mKogBre1_haplotype_2 | Kogia breviceps | pygmy sperm whale (mKogBre1 haplotype 2 2022) | 27615 | SAMN31719513 | haploid | Chromosome | 27 Nov 2022 | Genome 10K | 2,613,416,393 | 41.38 | secondary | mammals |
| 67 | GCA_026652325.1 | GCA_026652325.1_ASM2665232v1 | Pleurodeles waltl | Iberian ribbed newt (20211129_DDA 2022 genbank) | 8319 | SAMN28911188 | haploid | Chromosome | 05 Dec 2022 | The Max Planck Institute of Molecular Cell Biology and Genetics | 20,300,798,037 | 71.01 | primary | amphibians |
| 68 | GCA_027408225.1 | GCA_027408225.1_bGalGal5.pri | Gallus gallus | chicken (Cobb bGalGal5 primary hap 2022) | 9031 | SAMN28017485 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 1,109,044,877 | 18.25 | secondary | birds |
| 69 | GCA_027410445.1 | GCA_027410445.1_aDisPic1.pri | Discoglossus pictus | painted frog (primary hap 2022) | 8351 | SAMN32227109 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 3,872,602,052 | 64.30 | primary | amphibians |
| 70 | GCA_027474245.1 | GCA_027474245.1_bSphHub1.pri | Spheniscus humboldti | Humboldt's penguin (bSphHub1 primary hap 2022) | 9240 | SAMN28408465 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 1,358,357,718 | 16.34 | primary | birds |
| 71 | GCA_027557775.1 | GCA_027557775.1_bGalGal4.pri | Gallus gallus | chicken (Ross bGalGal4 primary hap 2023) | 9031 | SAMN28017486 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Jan 2023 | Vertebrate Genomes Project | 1,094,281,734 | 17.43 | secondary | birds |
| 72 | GCA_027559615.1 | GCA_027559615.1_bAcrTri1.pri | Acridotheres tristis | common myna (bArcTri1 primary hap 2023) | 279927 | SAMN28454388 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 1,193,419,045 | 20.08 | primary | birds |
| 73 | GCA_027563665.1 | GCA_027563665.1_DD_ASM_mAP_20210503 | Antrozous pallidus | pallid bat (TK200870 primary hap 2023) | 9440 | SAMN30225125 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Bat1K | 2,126,460,045 | 39.43 | primary | mammals |
| 74 | GCA_027574665.1 | GCA_027574665.1_bRhyJub1.pri | Rhynochetos jubatus | kagu (bRhyJub1 primary hap 2023) | 54386 | SAMN31802033 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 1,331,454,348 | 17.50 | primary | birds |
| 75 | GCA_027789725.1 | GCA_027789725.1_aDenEbr1.mat | Dendropsophus ebraccatus | hourglass treefrog (maternal 2023 genbank) | 150705 | SAMN32145295 | haploid (maternal haplotype of diploid) | Scaffold | 13 Jan 2023 | Vertebrate Genomes Project | 2,352,821,159 | 56.39 | secondary | amphibians |
| 76 | GCA_027887205.1 | GCA_027887205.1_rMalTer1.hap2 | Malaclemys terrapin pileata | diamondback terrapin (hap2 rMalTer1 2023) | 2991368 | SAMN31394215 | haploid | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 2,212,837,039 | 46.36 | secondary | reptiles |
| 77 | GCA_027917415.1 | GCA_027917415.1_aGasCar1.hap2 | Gastrophryne carolinensis | eastern narrow-mouthed toad (hap2 2023) | 8429 | SAMN31805274 | haploid | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 4,305,890,454 | 71.46 | secondary | amphibians |
| 78 | GCA_027917425.1 | GCA_027917425.1_aGasCar1.pri | Gastrophryne carolinensis | eastern narrow-mouthed toad (primary haplotype 2023) | 8429 | SAMN31805274 | haploid | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 4,336,248,441 | 71.19 | primary | amphibians |
| 79 | GCA_027942865.1 | GCA_027942865.1_fOdoBon6.hap1 | Odontesthes bonariensis | pejerrey (fOdoBon6 haplotype 1 2023) | 219752 | SAMN31802211 | haploid | Chromosome | 24 Jan 2023 | Vertebrate Genomes Project | 945,823,896 | 38.82 | primary | fish |
| 80 | GCA_027942885.1 | GCA_027942885.1_fOdoBon6.hap2 | Odontesthes bonariensis | pejerrey (fOdoBon6 haplotype 2 2023) | 219752 | SAMN31802211 | haploid | Scaffold | 20 Jan 2023 | Vertebrate Genomes Project | 974,945,057 | 40.81 | secondary | fish |
| 81 | GCA_028017805.1 | GCA_028017805.1_mBalRic1.hap1 | Balaenoptera ricei | Rice's whale (hap1 2023) | 2746895 | SAMN32629060 | haploid | Scaffold | 26 Jan 2023 | Vertebrate Genomes Project | 2,844,045,133 | 39.87 | secondary | mammals |
| 82 | GCA_028017845.1 | GCA_028017845.1_rEmyOrb1.hap2 | Emys orbicularis | European pond turtle (hap2 rEmyOrb1 2023) | 82168 | SAMN31805221 | haploid | Scaffold | 26 Jan 2023 | Vertebrate Genomes Project | 2,327,425,914 | 45.57 | secondary | reptiles |
| 83 | GCA_028020825.1 | GCA_028020825.1_bPodStr1.pri | Podargus strigoides | tawny frogmouth (bPodStr1 primary hap 2023) | 8905 | SAMN31801959 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 1,271,141,449 | 27.67 | primary | birds |
| 84 | GCA_028021495.1 | GCA_028021495.1_fLycPai1.hap1 | Lycodopsis pacificus | blackbelly eelpout (fLycPai1 haplotype 1 2023) | 1772091 | SAMN32629383 | haploid | Scaffold | 26 Jan 2023 | Vertebrate Genomes Project | 661,271,547 | 30.40 | secondary | fish |
| 85 | GCA_028022725.1 | GCA_028022725.1_fLycPai1.hap2 | Lycodopsis pacificus | blackbelly eelpout (fLycPai1 haplotype 2 2023) | 1772091 | SAMN32629383 | haploid | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 646,369,862 | 29.94 | primary | fish |
| 86 | GCA_028022735.1 | GCA_028022735.1_bGypBar2.pri | Gypaetus barbatus | lammergeier (bGypBar2 primary hap 2023) | 33610 | SAMN32256411 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 1,365,299,843 | 17.56 | primary | birds |
| 87 | GCA_028390055.1 | GCA_028390055.1_aPseCor3.hap1 | Pseudophryne corroboree | corroboree frog (hap1 2023) | 495146 | SAMN32631236 | haploid | Scaffold | 01 Feb 2023 | Vertebrate Genomes Project | 8,945,609,516 | 76.17 | secondary | amphibians |
| 88 | GCA_028451465.1 | GCA_028451465.1_mEreDor1.pri | Erethizon dorsatum | North American porcupine (mEreDor1 primary hap 2023) | 34844 | SAMN32359106 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Feb 2023 | Vertebrate Genomes Project | 2,432,147,792 | 41.67 | primary | mammals |
| 89 | GCA_028501385.1 | GCA_028501385.1_bRisTri1.mat.cur.20221130 | Rissa tridactyla | black-legged kittiwake (bRisTri1.mat 2023) | 75485 | SAMN32104255 | haploid (maternal haplotype of diploid) | Chromosome | 10 Feb 2023 | Vertebrate Genomes Project | 1,268,441,171 | 18.86 | secondary | birds |
| 90 | GCA_028571275.1 | GCA_028571275.1_mEubGla1.hap1 | Eubalaena glacialis | North Atlantic right whale (hap1 2023) | 27606 | SAMN32746534 | haploid | Chromosome | 09 Feb 2023 | Vertebrate Genomes Project | 2,615,329,254 | 43.42 | secondary | mammals |
| 91 | GCA_028571685.1 | GCA_028571685.1_mHetBru1.pri | Heterohyrax brucei | yellow-spotted hyrax (mHetBru1 2023) | 77598 | SAMN33092455 | haploid | Chromosome | 10 Feb 2023 | Vertebrate Genomes Project | 3,488,059,404 | 55.27 | primary | mammals |
| 92 | GCA_028858555.1 | GCA_028858555.1_bAraAra1.hap2 | Ara ararauna | blue-and-yellow macaw (hap2 2023) | 9226 | SAMN33059336 | haploid | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,302,242,811 | 28.73 | secondary | birds |
| 93 | GCA_028858595.1 | GCA_028858595.1_bGruAme1.pat | Grus americana | whooping crane (paternal hap 2023) | 9117 | SAMN32775697 | haploid (paternal haplotype of diploid) | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,200,805,165 | 20.22 | secondary | birds |
| 94 | GCA_028858625.2 | GCA_028858625.2_bColStr4.1.hap2 | Colius striatus | speckled mousebird (v2 hap2 2023) | 57412 | SAMN33339572 | haploid | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,153,503,718 | 25.49 | secondary | birds |
| 95 | GCA_028858755.1 | GCA_028858755.1_bAraAra1.hap1 | Ara ararauna | blue-and-yellow macaw (hap1 2023) | 9226 | SAMN33059336 | haploid | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,224,360,198 | 24.87 | primary | birds |
| 96 | GCA_028858805.2 | GCA_028858805.2_NHGRI_mPanTro3-v2.0_alt | Pan troglodytes | chimpanzee (v2 AG18354 alternate hap 2024) | 9598 | SAMN30216104 | alternate-pseudohaplotype | Complete Genome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 2,998,472,174 | 48.84 | secondary | primates |
| 97 | GCA_028878085.3 | GCA_028878085.3_NHGRI_mSymSyn1-v2.0_alt | Symphalangus syndactylus | siamang (v3 Jambi alternate hap 2024) | 9590 | SAMN30216103 | alternate-pseudohaplotype | Chromosome | 05 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,097,367,794 | 55.60 | secondary | primates |
| 98 | GCA_028885525.2 | GCA_028885525.2_NHGRI_mPonPyg2-v2.0_alt | Pongo pygmaeus | Bornean orangutan (v2 AG05252 alternate hap 2024) | 9600 | SAMN10521809 | alternate-pseudohaplotype | Chromosome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,007,136,161 | 53.74 | secondary | primates |
| 99 | GCA_028885685.2 | GCA_028885685.2_NHGRI_mPonAbe1-v2.0_alt | Pongo abelii | Sumatran orangutan (v2 AG06213 alternate hap 2024) | 9601 | SAMN10521808 | alternate-pseudohaplotype | Chromosome | 05 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,000,996,708 | 53.59 | secondary | primates |
| 100 | GCA_029215775.1 | GCA_029215775.1_rAnnSte1.0.hap1 | Anniella stebbinsi | San Diegan legless lizard (HBS135921 primary hap 2023) | 2202111 | SAMN33386066 | haploid | Scaffold | 14 Mar 2023 | UCLA | 1,890,507,581 | 50.38 | primary | reptiles |
| 101 | GCA_029215795.1 | GCA_029215795.1_rAnnSte1.0.hap2 | Anniella stebbinsi | San Diegan legless lizard (HBS135921 alternate hap 2023) | 2202111 | SAMN33386066 | haploid | Scaffold | 14 Mar 2023 | UCLA | 1,891,076,299 | 50.62 | secondary | reptiles |
| 102 | GCA_029493135.1 | GCA_029493135.1_aHylSar1.hap2 | Hyla sarda | Sardinian treefrog (hap2 2023) | 327740 | SAMN32629340 | haploid | Scaffold | 30 Mar 2023 | Vertebrate Genomes Project | 4,080,080,015 | 70.95 | secondary | amphibians |
| 103 | GCA_029633845.1 | GCA_029633845.1_fLamInc1.hap1 | Lampris incognitus | smalleye Pacific opah (hap1 2023) | 2546036 | SAMN34060140 | haploid | Scaffold | 07 Apr 2023 | Vertebrate Genomes Project | 1,477,069,270 | 54.54 | secondary | fish |
| 104 | GCA_029633875.2 | GCA_029633875.2_fHopMal1.hap2 | Hoplias malabaricus | trahira (v2 hap2 2024) | 27720 | SAMN32740525 | haploid (haplotype 2) | Chromosome | 13 Dec 2024 | Vertebrate Genomes Project | 1,026,599,506 | 38.80 | secondary | fish |
| 105 | GCA_029931755.1 | GCA_029931755.1_rEulEur1.hap2 | Euleptes europaea | European leaf-toed gecko (hap2 2023) | 460621 | SAMN32622440 | haploid | Scaffold | 03 May 2023 | Vertebrate Genomes Project | 1,775,520,415 | 48.74 | secondary | reptiles |
| 106 | GCA_030015355.1 | GCA_030015355.1_fTriRos1.hap2 | Trichomycterus rosablanca | Rosablanca catfish (hap2 2023) | 2290929 | SAMN32755940 | haploid | Scaffold | 15 May 2023 | Vertebrate Genomes Project | 996,754,446 | 54.53 | secondary | fish |
| 107 | GCA_030020295.1 | GCA_030020295.1_rGavGan2.hap2 | Gavialis gangeticus | gharial (hap2 2023) | 94835 | SAMN34116453 | haploid | Chromosome | 22 May 2023 | Vertebrate Genomes Project | 2,328,538,659 | 42.15 | primary | reptiles |
| 108 | GCA_030020305.1 | GCA_030020305.1_mLoxAfr1.hap1 | Loxodonta africana | African savanna elephant (hap1 mLoxAfr1 2023) | 9785 | SAMN32756554 | haploid | Scaffold | 15 May 2023 | Vertebrate Genomes Project | 3,575,747,632 | 53.99 | secondary | mammals |
| 109 | GCA_030020385.1 | GCA_030020385.1_rGavGan2.hap1 | Gavialis gangeticus | gharial (hap1 2023) | 94835 | SAMN34116453 | haploid | Scaffold | 16 May 2023 | Vertebrate Genomes Project | 2,339,480,201 | 42.69 | secondary | reptiles |
| 110 | GCA_030020945.1 | GCA_030020945.1_mManPen7.hap2 | Manis pentadactyla | Chinese pangolin (hap2 mManPen7 2023) | 143292 | SAMN32757332 | haploid | Scaffold | 16 May 2023 | Vertebrate Genomes Project | 2,869,287,698 | 40.48 | secondary | mammals |
| 111 | GCA_030020955.1 | GCA_030020955.1_mDugDug1.hap2 | Dugong dugon | dugong (hap2 mDugDug1 2023) | 29137 | SAMN33212336 | haploid | Scaffold | 16 May 2023 | Vertebrate Genomes Project | 3,154,453,075 | 52.52 | secondary | mammals |
| 112 | GCA_030028035.1 | GCA_030028035.1_mHipAmp2.hap1 | Hippopotamus amphibius kiboko | hippopotamus (mHipAmp2 hap1 2023) | 575201 | SAMN33342074 | haploid | Scaffold | 17 May 2023 | Vertebrate Genomes Project | 2,533,318,371 | 35.57 | secondary | mammals |
| 113 | GCA_030035585.1 | GCA_030035585.1_mDugDug1.hap1 | Dugong dugon | dugong (hap1 mDugDug1 2023) | 29137 | SAMN33212336 | haploid | Chromosome | 18 May 2023 | Vertebrate Genomes Project | 3,158,488,110 | 51.64 | primary | mammals |
| 114 | GCA_030035685.1 | GCA_030035685.1_sMobBir1.hap2 | Mobula birostris | giant manta (hap2 2023) | 1983395 | SAMN32746370 | haploid | Chromosome | 22 May 2023 | Vertebrate Genomes Project | 3,634,101,053 | 63.65 | secondary | sharks |
| 115 | GCA_030035715.1 | GCA_030035715.1_rRhiFlo1.hap1 | Rhineura floridana | Florida worm lizard (hap1 rRhiFlo1 2023) | 261503 | SAMN34105704 | haploid | Scaffold | 16 May 2023 | Vertebrate Genomes Project | 2,321,796,813 | 57.36 | secondary | reptiles |
| 116 | GCA_030144785.1 | GCA_030144785.1_sHypSab1.hap2 | Hypanus sabinus | Atlantic stingray (hap2 2023) | 79690 | SAMN32745077 | haploid | Chromosome | 05 Jun 2023 | Vertebrate Genomes Project | 3,635,158,545 | 62.01 | secondary | sharks |
| 117 | GCA_030412085.1 | GCA_030412085.1_rCycPin1.hap2 | Cyclura pinguis | Grand Cayman blue iguana (hap2 2023) | 118683 | SAMN35151422 | haploid | Scaffold | 05 Jul 2023 | Vertebrate Genomes Project | 1,955,392,031 | 42.99 | secondary | reptiles |
| 118 | GCA_030412105.1 | GCA_030412105.1_rCycPin1.hap1 | Cyclura pinguis | Grand Cayman blue iguana (hap1 2023) | 118683 | SAMN35151422 | haploid | Chromosome | 05 Jul 2023 | Vertebrate Genomes Project | 1,983,631,412 | 43.65 | primary | reptiles |
| 119 | GCA_030435715.1 | GCA_030435715.1_mOchPri1.hap2 | Ochotona princeps | American pika (hap2 2023) | 9978 | SAMN35822658 | haploid | Chromosome | 13 Jul 2023 | Vertebrate Genomes Project | 2,534,779,560 | 46.53 | secondary | mammals |
| 120 | GCA_030440675.1 | GCA_030440675.1_ASM3044067v1 | Furcifer pardalis | lizards F.pardalis (Fpa_1 2023) | 187939 | SAMN35298317 | haploid | Chromosome | 12 Jul 2023 | Institute of Zoology, Chinese Academy of Sciences | 1,609,777,135 | 48.63 | primary | reptiles |
| 121 | GCA_030445055.2 | GCA_030445055.2_mDasNov1.1.hap1 | Dasypus novemcinctus | nine-banded armadillo (v2 hap1 2023) | 9361 | SAMN32738980 | haploid | Chromosome | 13 Jul 2023 | Vertebrate Genomes Project | 3,296,222,425 | 42.23 | secondary | mammals |
| 122 | GCA_030448965.1 | GCA_030448965.1_fSalBra1.hap1 | Salminus brasiliensis | dorado (hap1 2023) | 930266 | SAMN35075251 | haploid | Scaffold | 13 Jul 2023 | Vertebrate Genomes Project | 1,078,246,036 | 44.63 | secondary | fish |
| 123 | GCA_030463565.1 | GCA_030463565.1_bPelCri1.pri | Pelecanus crispus | Dalmatian pelican (primary hap 2023) | 36300 | SAMN35784560 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jul 2023 | Vertebrate Genomes Project | 1,314,587,946 | 24.65 | primary | birds |
| 124 | GCA_030490855.1 | GCA_030490855.1_bPoeAtr1.hap2 | Poecile atricapillus | black-capped chickadee (hap2 2023) | 48891 | SAMN35074507 | haploid | Chromosome | 18 Jul 2023 | Vertebrate Genomes Project | 987,998,379 | 14.40 | secondary | birds |
| 125 | GCA_030684295.1 | GCA_030684295.1_sSteTig4.hap2 | Stegostoma tigrinum | zebra shark (hap2 2023) | 3053191 | SAMN35823397 | haploid | Scaffold | 07 Aug 2023 | Vertebrate Genomes Project | 3,603,936,669 | 64.88 | secondary | sharks |
| 126 | GCA_030820635.1 | GCA_030820635.1_KIZ_Lrid_1.0 | Chroicocephalus ridibundus | black-headed gull (Kunming 2023) | 1192867 | SAMN36812646 | haploid | Chromosome | 18 Aug 2023 | Kunming Institute of Zoology | 1,243,762,172 | 23.13 | secondary | birds |
| 127 | GCA_030848825.1 | GCA_030848825.1_DD_mTadBra1_pri | Tadarida brasiliensis | Brazilian free-tailed bat (primary hap 2023) | 9438 | SAMN35075070 | haploid (principal pseudohaplotype of diploid) | Chromosome | 22 Aug 2023 | Bat1K | 2,283,188,801 | 36.16 | primary | mammals |
| 128 | GCA_030867065.1 | GCA_030867065.1_rAllMis1 | Alligator mississippiensis | American alligator (2023 genbank) | 8496 | SAMN37045233 | haploid | Scaffold | 22 Aug 2023 | Vertebrate Genomes Project | 2,373,280,586 | 43.05 | secondary | reptiles |
| 129 | GCA_030867085.1 | GCA_030867085.1_rLiaOli1.hap2 | Liasis olivaceus | olive python (hap2 2023) | 283338 | SAMN32739907 | haploid | Chromosome | 24 Aug 2023 | Vertebrate Genomes Project | 1,478,263,624 | 35.43 | secondary | reptiles |
| 130 | GCA_030867105.1 | GCA_030867105.1_rLiaOli1.hap1 | Liasis olivaceus | olive python (hap1 2023) | 283338 | SAMN32739907 | haploid | Chromosome | 24 Aug 2023 | Vertebrate Genomes Project | 1,486,119,866 | 35.92 | primary | reptiles |
| 131 | GCA_030867145.1 | GCA_030867145.1_bOpiHoa1.hap1 | Opisthocomus hoazin | hoatzin (hap1 2023) | 30419 | SAMN37055462 | haploid | Complete Genome | 24 Aug 2023 | Vertebrate Genomes Project | 1,482,459,898 | 25.27 | primary | birds |
| 132 | GCA_030867165.1 | GCA_030867165.1_bOpiHoa1.hap2 | Opisthocomus hoazin | hoatzin (hap2 2023) | 30419 | SAMN37055462 | haploid | Complete Genome | 24 Aug 2023 | Vertebrate Genomes Project | 1,355,639,139 | 24.22 | secondary | birds |
| 133 | GCA_030936125.1 | GCA_030936125.1_bGavSte3.hap1 | Gavia stellata | red-throated loon (hap1 2023) | 37040 | SAMN37096312 | haploid | Complete Genome | 30 Aug 2023 | Vertebrate Genomes Project | 1,403,461,371 | 20.10 | secondary | birds |
| 134 | GCA_031001685.1 | GCA_031001685.1_rEryReg1.hap3 | Erythrolamprus reginae | royal ground snake (hap3 2023) | 121349 | SAMN32631248 | haploid | Contig | 30 Aug 2023 | Vertebrate Genomes Project | 2,090,234,102 | 64.15 | secondary | reptiles |
| 135 | GCA_031021085.1 | GCA_031021085.1_rEryReg1.hap2 | Erythrolamprus reginae | royal ground snake (hap2 2023) | 121349 | SAMN32631248 | haploid | Contig | 30 Aug 2023 | Vertebrate Genomes Project | 2,038,227,610 | 59.44 | secondary | reptiles |
| 136 | GCA_031216445.1 | GCA_031216445.1_YSFRI_Lmacu_1.1 | Lateolabrax maculatus | spotted sea bass (ZS-2023 2023) | 315492 | SAMN36708487 | haploid | Chromosome | 07 Sep 2023 | Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences | 632,510,465 | 26.28 | primary | fish |
| 137 | GCA_031468805.1 | GCA_031468805.1_bMorBas2.hap1 | Morus bassanus | northern gannet (hap1 2023) | 37578 | SAMN37096299 | haploid | Chromosome | 15 Sep 2023 | Vertebrate Genomes Project | 1,381,630,140 | 17.61 | secondary | birds |
| 138 | GCA_031468815.1 | GCA_031468815.1_bMorBas2.hap2 | Morus bassanus | northern gannet (hap2 2023) | 37578 | SAMN37096299 | haploid | Complete Genome | 15 Sep 2023 | Vertebrate Genomes Project | 1,294,804,326 | 12.58 | primary | birds |
| 139 | GCA_031876335.1 | GCA_031876335.1_mHipLar1.pri | Hipposideros larvatus | intermediate roundleaf bat (primary hap 2023) | 175524 | SAMN36277597 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 2,338,923,724 | 35.90 | primary | mammals |
| 140 | GCA_031877785.1 | GCA_031877785.1_bStrAlu1.hap2 | Strix aluco | tawny owl (hap2 2023) | 111821 | SAMN37055808 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 1,219,048,950 | 15.11 | secondary | birds |
| 141 | GCA_031877795.1 | GCA_031877795.1_bStrAlu1.hap1 | Strix aluco | tawny owl (hap1 2023) | 111821 | SAMN37055808 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 1,414,802,443 | 18.97 | primary | birds |
| 142 | GCA_031878655.1 | GCA_031878655.1_mTapInd1.hap1 | Tapirus indicus | Asiatic tapir (hap1 2023) | 9802 | SAMN37096863 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 2,498,393,425 | 38.08 | secondary | mammals |
| 143 | GCA_031878665.1 | GCA_031878665.1_mThoBot2.hap2 | Thomomys bottae | Botta's pocket gopher (hap2 2023) | 10013 | SAMN37300244 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 1,879,249,320 | 36.75 | secondary | mammals |
| 144 | GCA_031878675.1 | GCA_031878675.1_mThoBot2.hap1 | Thomomys bottae | Botta's pocket gopher (hap1 2023) | 10013 | SAMN37300244 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 2,025,650,949 | 38.03 | primary | mammals |
| 145 | GCA_031878705.1 | GCA_031878705.1_mTapInd1.hap2 | Tapirus indicus | Asiatic tapir (hap2 2023) | 9802 | SAMN37096863 | haploid | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 2,477,445,429 | 38.23 | primary | mammals |
| 146 | GCA_031885435.1 | GCA_031885435.1_bPasSan2.pri | Passerculus sandwichensis | Savannah sparrow (primary hap 2023) | 161624 | SAMN35784765 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 Sep 2023 | Vertebrate Genomes Project | 1,270,940,266 | 23.70 | primary | birds |
| 147 | GCA_031893025.1 | GCA_031893025.1_aLepFus1.hap1 | Leptodactylus fuscus | rufous frog (hap1 2023) | 238119 | SAMN37055805 | haploid | Chromosome | 26 Sep 2023 | Vertebrate Genomes Project | 2,307,711,212 | 57.86 | secondary | amphibians |
| 148 | GCA_031893055.1 | GCA_031893055.1_aLepFus1.hap2 | Leptodactylus fuscus | rufous frog (hap2 2023) | 238119 | SAMN37055805 | haploid | Chromosome | 26 Sep 2023 | Vertebrate Genomes Project | 2,197,996,823 | 59.61 | primary | amphibians |
| 149 | GCA_032164245.1 | GCA_032164245.1_rSteOdo2_p1.0 | Sternotherus odoratus | eastern musk turtle (primary hap 2023) | 142480 | SAMN36942441 | haploid (principal pseudohaplotype of diploid) | Scaffold | 29 Sep 2023 | Canada's Genomic Enterprise | 1,759,411,633 | 39.18 | primary | reptiles |
| 150 | GCA_032719375.1 | GCA_032719375.1_Trm_1.0 | Columba livia | rock pigeon (Tarim TR01 2023) | 8932 | SAMN37449930 | haploid | Chromosome | 18 Oct 2023 | Shanghai Jiao Tong University | 1,295,808,506 | 22.56 | secondary | birds |
| 151 | GCA_033296515.1 | GCA_033296515.1_rMacSuw1.hap1 | Macrochelys suwanniensis | Suwannee snapping turtle (hap1 2023) | 3026461 | SAMN37052244 | haploid | Chromosome | 06 Nov 2023 | Vertebrate Genomes Project | 2,132,261,265 | 43.19 | secondary | reptiles |
| 152 | GCA_033349115.1 | GCA_033349115.1_rMacSuw1.hap2 | Macrochelys suwanniensis | Suwannee snapping turtle (hap2 2023) | 3026461 | SAMN37052244 | haploid | Chromosome | 06 Nov 2023 | Vertebrate Genomes Project | 1,937,254,095 | 43.13 | primary | reptiles |
| 153 | GCA_033958435.1 | GCA_033958435.1_ASM3395843v1 | Carettochelys insculpta | pitted-shelled turtle (YL-2023 2023) | 44489 | SAMN38222597 | haploid | Chromosome | 27 Nov 2023 | Northwestern Polytechnical University | 2,180,317,067 | 47.95 | primary | reptiles |
| 154 | GCA_034619455.1 | GCA_034619455.1_bLepDis1.hap1 | Leptosomus discolor | cuckoo roller (hap1 2023) | 188344 | SAMN37284216 | haploid | Chromosome | 27 Dec 2023 | Vertebrate Genomes Project | 1,327,905,210 | 24.00 | secondary | birds |
| 155 | GCA_034619465.1 | GCA_034619465.1_bLepDis1.hap2 | Leptosomus discolor | cuckoo roller (hap2 2023) | 188344 | SAMN37284216 | haploid | Chromosome | 27 Dec 2023 | Vertebrate Genomes Project | 1,332,047,658 | 18.21 | primary | birds |
| 156 | GCA_035046495.1 | GCA_035046495.1_rTilSci1.hap1 | Tiliqua scincoides | common blue-tongued skink (hap1 2024) | 71010 | SAMN37319749 | haploid | Chromosome | 03 Jan 2024 | Vertebrate Genomes Project | 1,694,434,935 | 37.75 | secondary | reptiles |
| 157 | GCA_035046505.1 | GCA_035046505.1_rTilSci1.hap2 | Tiliqua scincoides | common blue-tongued skink (hap2 2024) | 71010 | SAMN37319749 | haploid | Chromosome | 03 Jan 2024 | Vertebrate Genomes Project | 1,623,332,312 | 37.07 | primary | reptiles |
| 158 | GCA_035083965.1 | GCA_035083965.1_klBraLanc5.hap2 | Branchiostoma lanceolatum | amphioxus (hap2 2024 genbank) | 7740 | SAMN38372375 | haploid | Chromosome | 05 Jan 2024 | Vertebrate Genomes Project | 458,287,516 | 27.49 | primary | invertebrate |
| 159 | GCA_035084065.1 | GCA_035084065.1_sHydCol1.hap1 | Hydrolagus colliei | spotted ratfish (hap1 2024) | 7873 | SAMN39156054 | haploid | Chromosome | 05 Jan 2024 | Vertebrate Genomes Project | 1,097,847,766 | 44.94 | secondary | sharks |
| 160 | GCA_035084135.1 | GCA_035084135.1_sHepPer1.hap2 | Heptranchias perlo | sharpnose sevengill shark (hap2 2024) | 212740 | SAMN38891902 | haploid | Scaffold | 04 Jan 2024 | Vertebrate Genomes Project | 3,059,754,027 | 55.71 | secondary | sharks |
| 161 | GCA_035084275.1 | GCA_035084275.1_sHydCol1.hap2 | Hydrolagus colliei | spotted ratfish (hap2 2024) | 7873 | SAMN39156054 | haploid | Chromosome | 05 Jan 2024 | Vertebrate Genomes Project | 1,003,172,678 | 44.82 | primary | sharks |
| 162 | GCA_035125265.1 | GCA_035125265.1_rCanAsp1.hap1 | Candoia aspera | Papuan ground boa (hap1 2024) | 51853 | SAMN37159891 | haploid | Scaffold | 05 Jan 2024 | Vertebrate Genomes Project | 1,529,331,567 | 33.58 | secondary | reptiles |
| 163 | GCA_035149815.1 | GCA_035149815.1_klBraLanc5.hap1 | Branchiostoma lanceolatum | amphioxus (hap1 2024) | 7740 | SAMN38372375 | haploid | Chromosome | 05 Jan 2024 | Vertebrate Genomes Project | 455,264,310 | 27.22 | secondary | invertebrate |
| 164 | GCA_035609135.1 | GCA_035609135.1_aEleCoq1.hap2 | Eleutherodactylus coqui | Puerto Rican coqui (hap2 2024) | 57060 | SAMN39150572 | haploid | Chromosome | 12 Jan 2024 | Vertebrate Genomes Project | 3,362,534,901 | 53.92 | secondary | amphibians |
| 165 | GCA_036010745.1 | GCA_036010745.1_bCalNic1.hap2 | Caloenas nicobarica | Nicobar pigeon (hap2 2024) | 187106 | SAMN39256628 | haploid | Chromosome | 24 Jan 2024 | Vertebrate Genomes Project | 1,197,404,482 | 23.25 | secondary | birds |
| 166 | GCA_036010775.2 | GCA_036010775.2_bColLiv1.mat.v2 | Columba livia | rock pigeon (v2 racing homer maternal hap 2024) | 8932 | SAMN38891892 | haploid (maternal haplotype of diploid) | Chromosome | 08 Apr 2024 | Vertebrate Genomes Project | 1,181,506,259 | 28.60 | secondary | birds |
| 167 | GCA_036010785.1 | GCA_036010785.1_bAmmMar1.pri | Ammospiza maritima maritima | seaside sparrow (bAmmMar1 primary hap 2024) | 3111550 | SAMN39181024 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Jan 2024 | Vertebrate Genomes Project | 1,397,856,043 | 34.58 | primary | birds |
| 168 | GCA_036172335.1 | GCA_036172335.1_bHelExo1.hap2 | Heliangelus exortis | tourmaline sunangel (hap2 2024) | 472823 | SAMN37253778 | haploid | Chromosome | 26 Jan 2024 | Vertebrate Genomes Project | 969,853,240 | 21.82 | secondary | birds |
| 169 | GCA_036172795.1 | GCA_036172795.1_aPelIbe1.pri | Pelodytes ibericus | Iberian parsley frog (aPelIbe1 2024) | 233781 | SAMN37110875 | haploid | Chromosome | 26 Jan 2024 | Vertebrate Genomes Project | 2,077,659,799 | 49.33 | primary | amphibians |
| 170 | GCA_036250135.1 | GCA_036250135.1_bDixPip1.hap2 | Pseudopipra pipra | white-crowned manakin (hap2 2024) | 415032 | SAMN32739894 | haploid | Chromosome | 29 Jan 2024 | Vertebrate Genomes Project | 1,027,640,383 | 21.40 | secondary | birds |
| 171 | GCA_036321565.1 | GCA_036321565.1_mCamDro1.hap2 | Camelus dromedarius | Arabian camel (hap2 2024) | 9838 | SAMN39296380 | haploid (maternal haplotype of diploid) | Chromosome | 31 Jan 2024 | Vertebrate Genomes Project | 2,086,495,379 | 31.48 | secondary | mammals |
| 172 | GCA_036365475.1 | GCA_036365475.1_fAmiCal2.hap2 | Amia calva | bowfin (hap2 2024) | 7924 | SAMN39643085 | haploid | Chromosome | 05 Feb 2024 | Vertebrate Genomes Project | 958,875,937 | 36.24 | secondary | fish |
| 173 | GCA_036365495.1 | GCA_036365495.1_sHetFra1.hap2 | Heterodontus francisci | horn shark (hap2 2024) | 7792 | SAMN39432692 | haploid | Chromosome | 05 Feb 2024 | Vertebrate Genomes Project | 5,196,885,747 | 67.85 | secondary | sharks |
| 174 | GCA_036417435.1 | GCA_036417435.1_mIniGeo1.hap1 | Inia geoffrensis | boutu (hap1 2024) | 9725 | SAMN32797734 | haploid | Chromosome | 06 Feb 2024 | Cetaceans Genome Project | 2,749,362,370 | 42.66 | primary | mammals |
| 175 | GCA_036417475.1 | GCA_036417475.1_mIniGeo1.hap2 | Inia geoffrensis | boutu (hap2 2024) | 9725 | SAMN32797734 | haploid | Chromosome | 05 Feb 2024 | Cetaceans Genome Project | 2,540,437,634 | 41.43 | secondary | mammals |
| 176 | GCA_036417515.1 | GCA_036417515.1_bDroNov1.hap2 | Dromaius novaehollandiae | emu (hap2 2024) | 8790 | SAMN39262816 | haploid | Chromosome | 26 Feb 2024 | Vertebrate Genomes Project | 1,359,162,908 | 26.97 | secondary | birds |
| 177 | GCA_036417535.1 | GCA_036417535.1_bChlMac1.mat | Chlamydotis macqueenii | Macqueen's bustard (maternal hap 2024) | 187382 | SAMN39296383 | haploid (maternal haplotype of diploid) | Chromosome | 07 Feb 2024 | Vertebrate Genomes Project | 1,273,933,319 | 27.09 | primary | birds |
| 178 | GCA_036417895.1 | GCA_036417895.1_bPasDom1.hap2 | Passer domesticus | house sparrow (hap2 2024) | 48849 | SAMN39255856 | haploid | Chromosome | 01 Feb 2024 | Vertebrate Genomes Project | 1,260,479,385 | 31.98 | secondary | birds |
| 179 | GCA_036417975.1 | GCA_036417975.1_bAptMan1.hap2 | Apteryx mantelli | North Island brown kiwi (hap2 2024) | 2696672 | SAMN39257886 | haploid | Chromosome | 06 Feb 2024 | Vertebrate Genomes Project | 1,593,539,360 | 30.47 | secondary | birds |
| 180 | GCA_036418225.1 | GCA_036418225.1_bChlMac1.pat | Chlamydotis macqueenii | Macqueen's bustard (paternal 2024) | 187382 | SAMN39296383 | haploid (paternal haplotype of diploid) | Chromosome | 07 Feb 2024 | Vertebrate Genomes Project | 1,106,587,813 | 25.27 | secondary | birds |
| 181 | GCA_036418255.1 | GCA_036418255.1_mEquCab1.mat | Equus caballus | horse (maternal 2024) | 9796 | SAMN39296386 | haploid (maternal haplotype of diploid) | Chromosome | 07 Feb 2024 | Vertebrate Genomes Project | 2,331,848,197 | 34.70 | secondary | mammals |
| 182 | GCA_036426135.1 | GCA_036426135.1_mEquCab1.pat | Equus caballus | horse (paternal hap 2024) | 9796 | SAMN39296386 | haploid (paternal haplotype of diploid) | Chromosome | 07 Feb 2024 | Vertebrate Genomes Project | 2,596,737,506 | 35.42 | primary | mammals |
| 183 | GCA_036784965.1 | GCA_036784965.1_fSalAlp2_p1.0 | Salvelinus alpinus oquassa | Arctic char (CBP00131 primary hap 2024) | 152111 | SAMN36900063 | haploid (principal pseudohaplotype of diploid) | Scaffold | 23 Feb 2024 | Canada's Genomic Enterprise | 2,129,031,653 | 56.08 | primary | fish |
| 184 | GCA_036850655.1 | GCA_036850655.1_bMerOct1.hap2 | Mergus octosetaceus | Brazilian merganser (hap2 2024) | 1570318 | SAMN39710078 | haploid | Chromosome | 26 Feb 2024 | Vertebrate Genomes Project | 1,213,885,900 | 31.82 | secondary | birds |
| 185 | GCA_036873955.1 | GCA_036873955.1_bMerOct1.hap1 | Mergus octosetaceus | Brazilian merganser (hap1 2024) | 1570318 | SAMN39710078 | haploid | Chromosome | 26 Feb 2024 | Vertebrate Genomes Project | 1,245,791,205 | 28.52 | primary | birds |
| 186 | GCA_036971175.1 | GCA_036971175.1_sNarBan1.hap2 | Narcine bancroftii | Caribbean electric ray (hap2 2024) | 1343680 | SAMN39325148 | haploid | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 3,110,263,114 | 52.51 | secondary | sharks |
| 187 | GCA_036971685.2 | GCA_036971685.2_bPatFas1.hap2 | Patagioenas fasciata | band-tailed pigeon (v2 hap2 2025) | 372321 | SAMN40018840 | haploid (haplotype 2) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 1,198,742,887 | 27.42 | primary | birds |
| 188 | GCA_037038515.1 | GCA_037038515.1_mMicPen1.hap1 | Microtus pennsylvanicus | meadow vole (hap1 2024) | 10058 | SAMN39894136 | haploid | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 2,369,135,991 | 41.94 | primary | mammals |
| 189 | GCA_037038545.1 | GCA_037038545.1_mRhyNas2.hap1 | Rhynchonycteris naso | proboscis bat (hap1 2024) | 249017 | SAMN39947078 | haploid | Chromosome | 06 Mar 2024 | Bat1K Project | 2,455,066,473 | 41.49 | primary | mammals |
| 190 | GCA_037038555.1 | GCA_037038555.1_mRhyNas2.hap2 | Rhynchonycteris naso | proboscis bat (hap2 2024) | 249017 | SAMN39947078 | haploid | Chromosome | 06 Mar 2024 | Bat1K Project | 2,296,372,838 | 40.66 | secondary | mammals |
| 191 | GCA_037038625.1 | GCA_037038625.1_fFunDia1.hap2 | Fundulus diaphanus | banded killifish (hap2 2024) | 54267 | SAMN39736529 | haploid | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 1,329,922,595 | 50.37 | secondary | fish |
| 192 | GCA_037039145.1 | GCA_037039145.1_fFunDia1.hap1 | Fundulus diaphanus | banded killifish (hap1 2024) | 54267 | SAMN39736529 | haploid | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 1,351,828,608 | 50.48 | primary | fish |
| 193 | GCA_037039175.1 | GCA_037039175.1_mMicPen1.hap2 | Microtus pennsylvanicus | meadow vole (hap2 2024) | 10058 | SAMN39894136 | haploid | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 2,156,400,253 | 32.15 | secondary | mammals |
| 194 | GCA_037157525.1 | GCA_037157525.1_mMolAlv2.hap1 | Molossus alvarezi | Alvarez's mastiff bat (hap1 2024) | 1552295 | SAMN40002245 | haploid | Chromosome | 15 Mar 2024 | Bat1K Project | 2,478,684,717 | 40.83 | primary | mammals |
| 195 | GCA_037157625.1 | GCA_037157625.1_bLatDis1.hap2 | Lathamus discolor | Swift parrot (hap2 2024) | 678569 | SAMN40289871 | haploid (haplotype 2) | Chromosome | 15 Mar 2024 | Vertebrate Genomes Project | 1,123,412,812 | 26.31 | secondary | birds |
| 196 | GCA_037176705.1 | GCA_037176705.1_mMolAlv2.hap2 | Molossus alvarezi | Alvarez's mastiff bat (hap2 2024) | 1552295 | SAMN40002245 | haploid | Chromosome | 15 Mar 2024 | Bat1K Project | 2,504,806,577 | 41.09 | secondary | mammals |
| 197 | GCA_037176775.1 | GCA_037176775.1_rAnoSag1.pat | Anolis sagrei | Brown anole (rAnoSag1 2024) | 38937 | SAMN40144551 | haploid (paternal haplotype of diploid) | Chromosome | 15 Mar 2024 | Vertebrate Genomes Project | 1,727,284,250 | 44.79 | secondary | reptiles |
| 198 | GCA_037306005.1 | GCA_037306005.1_aRhiDor1.hap1 | Rhinophrynus dorsalis | Mexican burrowing toad (hap1 2024) | 43566 | SAMN40302865 | haploid | Chromosome | 20 Mar 2024 | Vertebrate Genomes Project | 4,745,569,335 | 53.56 | primary | amphibians |
| 199 | GCA_037306015.1 | GCA_037306015.1_aRhiDor1.hap2 | Rhinophrynus dorsalis | Mexican burrowing toad (hap2 2024) | 43566 | SAMN40302865 | haploid | Chromosome | 20 Mar 2024 | Vertebrate Genomes Project | 4,535,323,468 | 53.02 | secondary | amphibians |
| 200 | GCA_037893015.1 | GCA_037893015.1_bilby.v1.9.chrom.fasta | Macrotis lagotis | bilby (mMagLag1 2024) | 92651 | SAMN39300766 | haploid | Chromosome | 04 Apr 2024 | The University of Sydney | 3,655,732,635 | 50.62 | primary | mammals |
| 201 | GCA_037950955.1 | GCA_037950955.1_bSarPap1.hap2 | Sarcoramphus papa | king vulture (hap2 2024) | 43583 | SAMN40647026 | haploid | Chromosome | 04 Apr 2024 | Vertebrate Genomes Project | 1,469,241,744 | 35.57 | secondary | birds |
| 202 | GCA_037962945.1 | GCA_037962945.1_bSarPap1.hap1 | Sarcoramphus papa | king vulture (hap1 2024) | 43583 | SAMN40647026 | haploid | Chromosome | 04 Apr 2024 | Vertebrate Genomes Project | 1,543,950,730 | 32.53 | primary | birds |
| 203 | GCA_038021265.1 | GCA_038021265.1_fCypVen1.hap1 | Cyprinella venusta | blacktail shiner (hap1 2024) | 28792 | SAMN40647018 | haploid | Chromosome | 08 Apr 2024 | Vertebrate Genomes Project | 918,162,819 | 46.85 | secondary | fish |
| 204 | GCA_038024135.1 | GCA_038024135.1_fCypVen1.hap2 | Cyprinella venusta | blacktail shiner (hap2 2024) | 28792 | SAMN40647018 | haploid | Chromosome | 08 Apr 2024 | Vertebrate Genomes Project | 928,717,837 | 47.57 | primary | fish |
| 205 | GCA_038048845.1 | GCA_038048845.1_aMixFle1.hap1 | Mixophyes fleayi | Fleay's barred frog (hap1 2024) | 3061075 | SAMN39657083 | haploid | Chromosome | 17 Apr 2024 | Vertebrate Genomes Project | 2,969,628,263 | 46.39 | primary | amphibians |
| 206 | GCA_038048865.1 | GCA_038048865.1_aMixFle1.hap2 | Mixophyes fleayi | Fleay's barred frog (hap2 2024) | 3061075 | SAMN39657083 | haploid | Chromosome | 17 Apr 2024 | Vertebrate Genomes Project | 2,876,209,288 | 44.69 | secondary | amphibians |
| 207 | GCA_038355195.1 | GCA_038355195.1_fOsmMor3.pri | Osmerus mordax | rainbow smelt (fOsmMor3 primary hap 2024) | 8014 | SAMN40867348 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 Apr 2024 | Vertebrate Genomes Project | 497,673,479 | 35.25 | primary | fish |
| 208 | GCA_038363095.2 | GCA_038363095.2_mArtLit.hap1 | Artibeus lituratus | great fruit-eating bat (v2 hap1 2024) | 27634 | SAMN40002247 | haploid (haplotype 1) | Chromosome | 21 May 2024 | Bat1K Project | 2,311,617,438 | 34.60 | primary | mammals |
| 209 | GCA_038363145.1 | GCA_038363145.1_mArtInt1.hap1 | Artibeus intermedius | great fruit-eating bat (hap1 2024) | 51014 | SAMN40002248 | haploid | Chromosome | 22 Apr 2024 | Bat1K Project | 2,293,600,955 | 34.66 | primary | mammals |
| 210 | GCA_038363175.2 | GCA_038363175.2_mArtLit1.hap2 | Artibeus lituratus | great fruit-eating bat (mArtLit1hap2 2024) | 27634 | SAMN40002247 | haploid (haplotype 2) | Chromosome | 17 May 2024 | Bat1K Project | 2,096,453,601 | 33.94 | secondary | mammals |
| 211 | GCA_038363225.1 | GCA_038363225.1_mArtInt1.hap2 | Artibeus intermedius | bat A.intermedius (hap2 2024) | 51014 | SAMN40002248 | haploid | Chromosome | 22 Apr 2024 | Bat1K Project | 2,080,478,059 | 33.53 | secondary | mammals |
| 212 | GCA_038501915.1 | GCA_038501915.1_aXenPet1.maternal.cur | Xenopus petersii | Peter's clawed frog (aXenPet1 2024) | 288555 | SAMN39187339 | haploid (maternal haplotype of diploid) | Chromosome | 29 Apr 2024 | Vertebrate Genomes Project | 2,613,116,200 | 44.51 | secondary | amphibians |
| 213 | GCA_038501925.1 | GCA_038501925.1_aXenPet1.paternal.cur | Xenopus petersii | Peter's clawed frog (aXenPet1 2024) | 288555 | SAMN39187339 | haploid (paternal haplotype of diploid) | Chromosome | 29 Apr 2024 | Vertebrate Genomes Project | 2,883,796,191 | 45.47 | primary | amphibians |
| 214 | GCA_039655065.1 | GCA_039655065.1_mGloMut1.hap1 | Glossophaga mutica | Merriam's long-tongued bat (hap1 2024) | 2994998 | SAMN40946060 | haploid (haplotype 1) | Chromosome | 17 May 2024 | Bat1K Project | 2,159,908,085 | 33.78 | primary | mammals |
| 215 | GCA_039656995.1 | GCA_039656995.1_mGloMut1.hap2 | Glossophaga mutica | Merriam's long-tongued bat (hap2 2024) | 2994998 | SAMN40946060 | haploid (haplotype 2) | Chromosome | 17 May 2024 | Bat1K Project | 2,156,622,230 | 32.89 | secondary | mammals |
| 216 | GCA_039720425.1 | GCA_039720425.1_bAmaOch1.hap2 | Amazona ochrocephala | yellow-crowned parrot (bAmaOch1hap2 2024) | 151761 | SAMN41018448 | haploid (haplotype 2) | Chromosome | 24 May 2024 | Vertebrate Genomes Project | 1,356,986,306 | 37.29 | secondary | birds |
| 217 | GCA_039720435.1 | GCA_039720435.1_bAmaOch1.hap1 | Amazona ochrocephala | yellow-crowned parrot (bAmaOch1hap1 2024) | 151761 | SAMN41018448 | haploid (haplotype 1) | Chromosome | 24 May 2024 | Vertebrate Genomes Project | 1,361,915,838 | 30.39 | primary | birds |
| 218 | GCA_039877575.1 | GCA_039877575.1_fChaTrf1.hap2 | Chaetodon trifascialis | chevron butterflyfish (hap2 2024) | 109706 | SAMN41253346 | haploid (haplotype 2) | Chromosome | 29 May 2024 | Vertebrate Genomes Project | 664,933,391 | 24.11 | secondary | fish |
| 219 | GCA_039878515.1 | GCA_039878515.1_bCotChi1.hap1 | Excalfactoria chinensis | bird E.chinensis (hap1 2024) | 46218 | SAMN41253798 | haploid (haplotype 1) | Chromosome | 29 May 2024 | Vertebrate Genomes Project | 974,517,173 | 20.66 | secondary | birds |
| 220 | GCA_039878825.1 | GCA_039878825.1_bCotChi1.hap2 | Excalfactoria chinensis | bird E.chinensis (hap2 2024) | 46218 | SAMN41253798 | haploid (haplotype 2) | Chromosome | 31 May 2024 | Vertebrate Genomes Project | 966,847,183 | 13.01 | primary | birds |
| 221 | GCA_039880925.1 | GCA_039880925.1_mMolNig1.hap2 | Molossus nigricans | northern black mastiff bat (mMolNig1hap2 2024) | 2997257 | SAMN40002246 | haploid (haplotype 2) | Chromosome | 29 May 2024 | Bat1K Project | 2,394,902,263 | 40.28 | secondary | mammals |
| 222 | GCA_039880945.1 | GCA_039880945.1_mMolNig1.hap1 | Molossus nigricans | northern black mastiff bat (mMolNig1hap1 2024) | 2997257 | SAMN40002246 | haploid (haplotype 1) | Chromosome | 29 May 2024 | Bat1K Project | 2,567,103,348 | 42.18 | primary | mammals |
| 223 | GCA_039906465.1 | GCA_039906465.1_bAegAlb1.hap2 | Aegotheles albertisi | bird A.albertisi (hap2 2024) | 48277 | SAMN41085506 | haploid (haplotype 2) | Chromosome | 30 May 2024 | Vertebrate Genomes Project | 1,051,698,180 | 21.38 | secondary | birds |
| 224 | GCA_039906525.1 | GCA_039906525.1_mPseCra1.hap2 | Pseudorca crassidens | false killer whale (hap2 2024) | 82174 | SAMN41253811 | haploid (haplotype 2) | Chromosome | 31 May 2024 | Vertebrate Genomes Project | 2,678,530,964 | 44.18 | secondary | mammals |
| 225 | GCA_039906565.1 | GCA_039906565.1_bAegAlb1.hap1 | Aegotheles albertisi | bird A.albertisi (hap1 2024) | 48277 | SAMN41085506 | haploid (haplotype 1) | Chromosome | 31 May 2024 | Vertebrate Genomes Project | 1,167,497,019 | 12.54 | primary | birds |
| 226 | GCA_040206675.1 | GCA_040206675.1_aAscTru1.hap2 | Ascaphus truei | tailed frog (A.truei hap2 2024) | 8439 | SAMN41155128 | haploid (haplotype 2) | Chromosome | 17 Jun 2024 | Vertebrate Genomes Project | 3,660,446,095 | 55.25 | secondary | amphibians |
| 227 | GCA_040206685.1 | GCA_040206685.1_aAscTru1.hap1 | Ascaphus truei | tailed frog (A.truei hap1 2024) | 8439 | SAMN41155128 | haploid (haplotype 1) | Chromosome | 17 Jun 2024 | Vertebrate Genomes Project | 3,722,616,900 | 55.73 | primary | amphibians |
| 228 | GCA_040805955.1 | GCA_040805955.1_T2T-sheep1.0 | Ovis aries | sheep (hu hu3095 2024) | 9940 | SAMN38029123 | haploid | Complete Genome | 22 Jul 2024 | China Agricultural University | 2,853,626,077 | 44.11 | primary | mammals |
| 229 | GCA_040807015.1 | GCA_040807015.1_bStrCam1.hap2 | Struthio camelus | African ostrich (bStrCam1hap2 2024) | 8801 | SAMN42123890 | haploid (haplotype 2) | Chromosome | 22 Jul 2024 | Vertebrate Genomes Project | 1,383,056,266 | 28.29 | secondary | birds |
| 230 | GCA_040894015.1 | GCA_040894015.1_aEngPut4.paternal | Engystomops pustulosus | Tungara frog (aEngPut4 paternal hap 2024) | 76066 | SAMN42463661 | haploid (paternal haplotype of diploid) | Chromosome | 30 Jul 2024 | Vertebrate Genomes Project | 2,081,032,022 | 52.62 | secondary | amphibians |
| 231 | GCA_040894355.2 | GCA_040894355.2_rMyuGeo1.pri | Myuchelys georgesi | Bellinger river turtle (v2 BRST_UC0152H_USYD 2025) | 1041117 | SAMN36918804 | haploid | Chromosome | 06 Feb 2025 | The University of Sydney | 1,980,039,302 | 26.49 | primary | reptiles |
| 232 | GCA_040939525.1 | GCA_040939525.1_ASM4093952v1 | Protopterus annectens | West African lungfish (Aquariam Glaser DD20220218a primary hap 2024) | 7888 | SAMN26533844 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 Aug 2024 | The Max Planck Institute of Molecular Cell Biology and Genetics | 40,524,173,670 | 72.73 | primary | fish |
| 233 | GCA_040954595.2 | GCA_040954595.2_keBalMisa1.hap2 | Saccoglossus sp. HW-2024a | hemichordates Saccoglossus HW-2024a (v2 hap2 2025) | 3154068 | SAMN40579982 | haploid (haplotype 2) | Chromosome | 27 Mar 2025 | Southwest University | 319,515,952 | 28.91 | secondary | invertebrate |
| 234 | GCA_040954625.2 | GCA_040954625.2_keBalMisa1.hap1 | Saccoglossus sp. HW-2024a | hemichordates Saccoglossus HW-2024a (v2 hap1 2025) | 3154068 | SAMN40579982 | haploid (haplotype 1) | Chromosome | 27 Mar 2025 | Southwest University | 329,694,088 | 29.27 | primary | invertebrate |
| 235 | GCA_040954845.1 | GCA_040954845.1_fLepOcu1.hap1 | Lepisosteus oculatus | spotted gar (fLepOcu1hap1 2024) | 7918 | SAMN41155427 | haploid (haplotype 1) | Chromosome | 01 Aug 2024 | Vertebrate Genomes Project | 1,110,649,520 | 34.48 | secondary | fish |
| 236 | GCA_040955645.1 | GCA_040955645.1_LycPic1.final.hap1 | Lycaon pictus | African hunting dog (LycPic1hap1 2024) | 9622 | SAMN36939365 | haploid (paternal haplotype of diploid) | Chromosome | 01 Aug 2024 | University of Copenhagen | 2,260,356,192 | 32.97 | secondary | mammals |
| 237 | GCA_040955705.1 | GCA_040955705.1_LycPic1.final.hap2 | Lycaon pictus | African hunting dog (LycPic1hap2 2024) | 9622 | SAMN36939365 | haploid (maternal haplotype of diploid) | Chromosome | 01 Aug 2024 | University of Copenhagen | 2,384,012,108 | 33.73 | primary | mammals |
| 238 | GCA_041735815.1 | GCA_041735815.1_T2T-goat2.0 | Capra hircus | Inner Mongolia cashmere goat (2024) | 9925 | SAMN41386043 | haploid | Complete Genome | 04 Sep 2024 | China Agricultural University | 2,863,923,675 | 44.34 | primary | mammals |
| 239 | GCA_041753875.1 | GCA_041753875.1_ASM4175387v1 | Acanthopagrus schlegelii | black porgy (SG-2024 2024) | 72011 | SAMN43087228 | haploid | Complete Genome | 05 Sep 2024 | ShenZhen University | 714,975,658 | 24.10 | primary | fish |
| 240 | GCA_041834305.1 | GCA_041834305.1_ASM4183430v1 | Megaptera novaeangliae | humpback whale (KW2013002 2024) | 9773 | SAMN41059645 | haploid | Chromosome | 09 Sep 2024 | University of Colorado - Boulder | 3,146,604,256 | 45.16 | primary | mammals |
| 241 | GCA_041902795.1 | GCA_041902795.1_ASM4190279v1 | Electrophorus electricus | electric eel (QZ-2024a 2024) | 8005 | SAMN42883346 | haploid | Chromosome | 12 Sep 2024 | Center for Ecological and Environmental Sciences | 833,427,914 | 42.36 | primary | fish |
| 242 | GCA_041903045.1 | GCA_041903045.1_ASM4190304v1 | Epinephelus lanceolatus | giant grouper (andai-2023 2024) | 310571 | SAMN41784231 | haploid | Chromosome | 12 Sep 2024 | Yellow Sea Fisheries Research Institute | 1,089,387,278 | 33.30 | primary | fish |
| 243 | GCA_042242115.1 | GCA_042242115.1_fArrGeo1.hap1 | Arripis georgiana | Australian ruff (RE-2024a hap1 2024) | 3352246 | SAMN40589644 | haploid (haplotype 1) | Chromosome | 25 Sep 2024 | (n/a) | 735,099,811 | 33.44 | secondary | fish |
| 244 | GCA_042242125.1 | GCA_042242125.1_fPemKlu1.hap2 | Pempheris klunzingeri | rough bullseye (RE-2024b hap2 2024) | 3127111 | SAMN40589649 | haploid (haplotype 2) | Chromosome | 25 Sep 2024 | (n/a) | 632,781,980 | 30.94 | secondary | fish |
| 245 | GCA_042242135.1 | GCA_042242135.1_fArrGeo1.hap2 | Arripis georgiana | Australian ruff (RE-2024a hap2 2024) | 3352246 | SAMN40589644 | haploid (haplotype 2) | Chromosome | 25 Sep 2024 | (n/a) | 801,586,327 | 38.19 | primary | fish |
| 246 | GCA_043161795.1 | GCA_043161795.1_mMacNem.hap2 | Macaca nemestrina | pig-tailed macaque (mMacNem1hap2 2024) | 9545 | SAMN41827875 | haploid (haplotype 2) | Chromosome | 15 Oct 2024 | Vertebrate Genomes Project | 2,963,967,802 | 53.07 | secondary | mammals |
| 247 | GCA_043250625.1 | GCA_043250625.1_fSebFas1.pri | Sebastes fasciatus | Acadian redfish (fSebFas1 primary hap 2024) | 394691 | SAMN43039489 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 Oct 2024 | Vertebrate Genomes Project | 833,835,073 | 40.13 | primary | fish |
| 248 | GCA_043290065.1 | GCA_043290065.1_mRhyPet1.hap2 | Rhynchocyon petersi | black and rufous elephant shrew (mRhyPet1hap2 2024) | 320637 | SAMN43274963 | haploid (haplotype 2) | Chromosome | 17 Oct 2024 | Vertebrate Genomes Project | 5,331,151,070 | 64.54 | secondary | mammals |
| 249 | GCA_043290085.1 | GCA_043290085.1_mRhyPet1.hap1 | Rhynchocyon petersi | black and rufous elephant shrew (mRhyPet1hap1 2024) | 320637 | SAMN43274963 | haploid (haplotype 1) | Chromosome | 17 Oct 2024 | Vertebrate Genomes Project | 5,620,370,870 | 71.76 | primary | mammals |
| 250 | GCA_043640875.1 | GCA_043640875.1_fEnoArm2.hap2 | Enoplosus armatus | old wife E.armatus (hap2 2024) | 215367 | SAMN40589647 | haploid (haplotype 2) | Chromosome | 24 Oct 2024 | (n/a) | 578,326,983 | 22.89 | secondary | fish |
| 251 | GCA_043727835.1 | GCA_043727835.1_ASM4372783v1 | Aselliscus stoliczkanus | Stoliczka's trident bat (China 2021113_DDA primary hap 2024) | 188568 | SAMN33370315 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Oct 2024 | Bat1K | 2,268,696,503 | 40.53 | primary | mammals |
| 252 | GCA_043727955.1 | GCA_043727955.1_ASM4372795v1 | Hipposideros larvatus | bat H.larvatus (China 20210929_DDb primary hap 2024) | 175524 | SAMN33388264 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Oct 2024 | Bat1K | 2,380,748,055 | 39.02 | secondary | mammals |
| 253 | GCA_043728065.1 | GCA_043728065.1_ASM4372806v1 | Rhinolophus affinis | intermediate horseshoe bat (China 20211001_DDa primary hap 2024) | 59477 | SAMN33388345 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Oct 2024 | Bat1K | 2,302,456,897 | 42.96 | primary | mammals |
| 254 | GCA_043728145.1 | GCA_043728145.1_ASM4372814v1 | Rhinolophus trifoliatus | trefoil horseshoe bat (Malaysia primary hap 2024) | 430492 | SAMN33421007 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Oct 2024 | Bat1K | 2,232,422,560 | 40.80 | primary | mammals |
| 255 | GCA_043748575.1 | GCA_043748575.1_ASM4374857v1 | Rhinolophus perniger lanosus | northern woolly horseshoe bat (20210929_DDc primary hap 2024) | 3030661 | SAMN33438666 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Oct 2024 | Bat1K | 2,185,535,924 | 39.98 | primary | mammals |
| 256 | GCA_043748645.1 | GCA_043748645.1_ASM4374864v1 | Mops condylurus | Angolan free-tailed bat (Cote d'Ivoire 20210831_DDa 2024) | 258863 | SAMN33550911 | haploid | Chromosome | 24 Oct 2024 | Bat1K | 2,209,024,231 | 36.04 | primary | mammals |
| 257 | GCA_043880285.1 | GCA_043880285.1_ASM4388028v1 | Doryrhina cyclops | cyclops roundleaf bat (Cote d'Ivoire 20210929_DDa primary hap 2024) | 249021 | SAMN33372470 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Oct 2024 | Bat1K | 2,390,604,663 | 41.90 | primary | mammals |
| 258 | GCA_043880425.1 | GCA_043880425.1_ASM4388042v1 | Rhinolophus yonghoiseni | Yong Hoi Sen's woolly horseshoe bat (Malaysia 20210929_DDd primary hap 2024) | 2952509 | SAMN33413875 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Oct 2024 | Bat1K | 2,323,192,134 | 42.06 | primary | mammals |
| 259 | GCA_043880545.1 | GCA_043880545.1_ASM4388054v1 | Rhinopoma microphyllum | greater mouse-tailed bat (20210906_DDa primary hap 2024) | 173903 | SAMN33421188 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Oct 2024 | Bat1K | 2,564,586,454 | 40.30 | primary | mammals |
| 260 | GCA_043880595.1 | GCA_043880595.1_ASM4388059v1 | Megaderma spasma | lesser false vampire bat (Vietnam 20211001_DDb primary hap 2024) | 9414 | SAMN33550865 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Oct 2024 | Bat1K | 2,124,740,378 | 35.96 | primary | mammals |
| 261 | GCA_044231645.1 | GCA_044231645.1_SynOce1_v1.hap2 | Neosynchiropus ocellatus | ocellated dragonet (captive hap2 2024) | 390378 | SAMN43082349 | haploid (haplotype 2) | Chromosome | 04 Nov 2024 | University of Copenhagen | 471,984,592 | 21.93 | secondary | fish |
| 262 | GCA_044231665.1 | GCA_044231665.1_SynOce1_v1.hap1 | Neosynchiropus ocellatus | ocellated dragonet (captive hap1 2024) | 390378 | SAMN43082349 | haploid (haplotype 1) | Chromosome | 04 Nov 2024 | University of Copenhagen | 470,091,028 | 21.06 | primary | fish |
| 263 | GCA_044231675.1 | GCA_044231675.1_ASM4423167v1 | Synchiropus picturatus | picturesque dragonet (SynPic1 hap2 2024) | 586865 | SAMN43082350 | haploid (haplotype 2) | Chromosome | 04 Nov 2024 | University of Copenhagen | 492,062,741 | 24.57 | primary | fish |
| 264 | GCA_044231685.1 | GCA_044231685.1_ASM4423168v1 | Synchiropus picturatus | picturesque dragonet (SynPic1 hap1 2024) | 586865 | SAMN43082350 | haploid (haplotype 1) | Chromosome | 04 Nov 2024 | University of Copenhagen | 500,467,214 | 25.26 | secondary | fish |
| 265 | GCA_044704965.1 | GCA_044704965.1_sPriJap1.hap2 | Pristiophorus japonicus | Japanese sawshark (hap2 2024) | 55135 | SAMN44116980 | haploid (haplotype 2) | Chromosome | 13 Nov 2024 | Vertebrate Genomes Project | 6,365,258,383 | 73.82 | secondary | sharks |
| 266 | GCA_045345405.1 | GCA_045345405.1_bGuaGua1_haplotype_1 | Guaruba guarouba | golden parakeet (hap1 2024) | 51906 | SAMN44514542 | haploid (haplotype 1) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 1,366,127,126 | 30.90 | primary | birds |
| 267 | GCA_045345505.1 | GCA_045345505.1_bMorGui1_haplotype_1 | Morphnus guianensis | crested eagle (hap1 2024) | 252789 | SAMN44513986 | haploid (haplotype 1) | Chromosome | 02 Dec 2024 | Instituto Tecnologico Vale | 1,316,595,704 | 28.17 | secondary | birds |
| 268 | GCA_045345515.1 | GCA_045345515.1_bMorGui1_haplotype_2 | Morphnus guianensis | crested eagle (hap2 2024) | 252789 | SAMN44513986 | haploid (haplotype 2) | Chromosome | 02 Dec 2024 | Instituto Tecnologico Vale | 1,576,624,229 | 33.65 | primary | birds |
| 269 | GCA_045362485.1 | GCA_045362485.1_fLetNeb1.hap2 | Lethrinus nebulosus | spangled emperor (hap2 2024) | 182658 | SAMN40589648 | haploid (haplotype 2) | Chromosome | 26 Nov 2024 | (n/a) | 1,122,130,221 | 29.19 | secondary | fish |
| 270 | GCA_045362495.1 | GCA_045362495.1_fLetNeb1.hap1 | Lethrinus nebulosus | spangled emperor (hap1 2024) | 182658 | SAMN40589648 | haploid (haplotype 1) | Chromosome | 26 Nov 2024 | (n/a) | 1,133,212,262 | 29.01 | primary | fish |
| 271 | GCA_045363885.1 | GCA_045363885.1_fPriTyp1.hap2 | Pristipomoides typus | sharptooth jobfish (hap2 2024) | 264210 | SAMN40589651 | haploid (haplotype 2) | Chromosome | 26 Nov 2024 | (n/a) | 1,146,345,582 | 35.15 | secondary | fish |
| 272 | GCA_045363895.1 | GCA_045363895.1_fPriTyp1.hap1 | Pristipomoides typus | sharptooth jobfish (hap1 2024) | 264210 | SAMN40589651 | haploid (haplotype 1) | Chromosome | 26 Nov 2024 | (n/a) | 1,147,302,341 | 35.20 | primary | fish |
| 273 | GCA_045364785.1 | GCA_045364785.1_rPodExp1_haplotype_1 | Podocnemis expansa | giant South American river turtle (hap1 2024) | 44507 | SAMN44516642 | haploid (haplotype 1) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 2,642,177,504 | 35.53 | secondary | reptiles |
| 274 | GCA_045364795.1 | GCA_045364795.1_bWilVid1_haplotype_1 | Willisornis vidua | Xingu scale-backed antbird (hap1 2024) | 1566151 | SAMN44516465 | haploid (haplotype 1) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 1,233,406,177 | 26.66 | primary | birds |
| 275 | GCA_045364805.1 | GCA_045364805.1_bWilVid1_haplotype_2 | Willisornis vidua | Xingu scale-backed antbird (hap2 2024) | 1566151 | SAMN44516465 | haploid (haplotype 2) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 1,070,918,723 | 23.10 | secondary | birds |
| 276 | GCA_045364815.1 | GCA_045364815.1_rPodExp1_haplotype_2 | Podocnemis expansa | giant South American river turtle (hap2 2024) | 44507 | SAMN44516642 | haploid (haplotype 2) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 2,565,358,608 | 33.86 | primary | reptiles |
| 277 | GCA_045519325.1 | GCA_045519325.1_bGuaGua1_haplotype_2 | Guaruba guarouba | golden parakeet (hap2 2024) | 51906 | SAMN44514542 | haploid (haplotype 2) | Chromosome | 02 Dec 2024 | Genomics of Brazilian Biodiversity | 1,190,219,310 | 29.43 | secondary | birds |
| 278 | GCA_045781085.1 | GCA_045781085.1_rPanTec1.hap2 | Pangshura tecta | Indian roofed turtle (hap2 2024) | 260642 | SAMN43277916 | haploid | Chromosome | 06 Dec 2024 | Vertebrate Genomes Project | 2,174,585,695 | 32.71 | primary | reptiles |
| 279 | GCA_045781095.1 | GCA_045781095.1_rPanTec1.hap1 | Pangshura tecta | Indian roofed turtle (hap1 2024) | 260642 | SAMN43277916 | haploid | Chromosome | 06 Dec 2024 | Vertebrate Genomes Project | 2,165,924,875 | 32.52 | secondary | reptiles |
| 280 | GCA_045843765.1 | GCA_045843765.1_mUroPar1.hap2 | Urocitellus parryii | Arctic ground squirrel (hap2 2024) | 9999 | SAMN44461866 | haploid (haplotype 2) | Chromosome | 12 Dec 2024 | Vertebrate Genomes Project | 2,750,197,790 | 35.97 | secondary | mammals |
| 281 | GCA_045843805.1 | GCA_045843805.1_mUroPar1.hap1 | Urocitellus parryii | Arctic ground squirrel (hap1 2024) | 9999 | SAMN44461866 | haploid (haplotype 1) | Chromosome | 13 Dec 2024 | Vertebrate Genomes Project | 2,935,792,869 | 36.47 | primary | mammals |
| 282 | GCA_046126795.1 | GCA_046126795.1_rDibSmi1.hap1 | Dibamus cf. smithi | lizards D.cf. smithi (hap1 2024) | 3379902 | SAMN44704469 | haploid (haplotype 1) | Chromosome | 13 Dec 2024 | Vertebrate Genomes Project | 2,282,721,590 | 44.05 | primary | reptiles |
| 283 | GCA_046126825.1 | GCA_046126825.1_rDibSmi1.hap2 | Dibamus cf. smithi | lizards D.cf. smithi (hap2 2024) | 3379902 | SAMN44704469 | haploid (haplotype 2) | Chromosome | 13 Dec 2024 | Vertebrate Genomes Project | 1,821,555,219 | 42.57 | secondary | reptiles |
| 284 | GCA_046129645.1 | GCA_046129645.1_bCyaCrs1.hap2 | Cyanocitta cristata | blue jay (hap2 2024) | 28727 | SAMN44574712 | haploid (haplotype 2) | Chromosome | 17 Dec 2024 | Vertebrate Genomes Project | 1,195,662,530 | 29.11 | secondary | birds |
| 285 | GCA_046129655.1 | GCA_046129655.1_bCyaCrs1.hap1 | Cyanocitta cristata | blue jay (hap1 2024) | 28727 | SAMN44574712 | haploid (haplotype 1) | Chromosome | 17 Dec 2024 | Vertebrate Genomes Project | 1,227,176,437 | 25.18 | primary | birds |
| 286 | GCA_046129695.1 | GCA_046129695.1_bLonStr1.mat | Lonchura striata | white-rumped munia (maternal hap 2024) | 40157 | SAMN44779081 | haploid (maternal haplotype of diploid) | Chromosome | 17 Dec 2024 | Vertebrate Genomes Project | 1,207,550,942 | 27.72 | primary | birds |
| 287 | GCA_046129705.1 | GCA_046129705.1_bLonStr1.pat | Lonchura striata | white-rumped munia (paternal hap 2024) | 40157 | SAMN44779081 | haploid (paternal haplotype of diploid) | Chromosome | 17 Dec 2024 | Vertebrate Genomes Project | 1,195,923,327 | 27.62 | secondary | birds |
| 288 | GCA_046255685.1 | GCA_046255685.1_fAmbSpe1.hap1 | Amblyopsis spelaea | northern cavefish (hap1 2024) | 1195602 | SAMN45063415 | haploid | Chromosome | 23 Dec 2024 | Vertebrate Genomes Project | 817,459,139 | 49.51 | primary | fish |
| 289 | GCA_046255725.1 | GCA_046255725.1_fAmbSpe1.hap2 | Amblyopsis spelaea | northern cavefish (hap2 2024) | 1195602 | SAMN45063415 | haploid | Chromosome | 23 Dec 2024 | Vertebrate Genomes Project | 865,090,090 | 52.00 | secondary | fish |
| 290 | GCA_046562875.1 | GCA_046562875.1_mPanOnc1_haplotype_2 | Panthera onca | jaguar (hap2 2025) | 9690 | SAMN44524170 | haploid (haplotype 2) | Chromosome | 08 Jan 2025 | Genomics of Brazilian Biodiversity | 2,487,960,463 | 41.80 | secondary | mammals |
| 291 | GCA_046562885.1 | GCA_046562885.1_mPanOnc1_haplotype_1 | Panthera onca | jaguar (hap1 2025) | 9690 | SAMN44524170 | haploid (haplotype 1) | Chromosome | 08 Jan 2025 | Genomics of Brazilian Biodiversity | 2,303,345,105 | 41.30 | primary | mammals |
| 292 | GCA_046562895.1 | GCA_046562895.1_mTriInu1_haplotype_2 | Trichechus inunguis | Amazon manatee (hap2 2025) | 9777 | SAMN44524440 | haploid (haplotype 2) | Chromosome | 08 Jan 2025 | Genomics of Brazilian Biodiversity | 3,320,339,069 | 57.34 | primary | mammals |
| 293 | GCA_046562985.1 | GCA_046562985.1_mTriInu1_haplotype_1 | Trichechus inunguis | Amazon manatee (hap1 2025) | 9777 | SAMN44524440 | haploid (haplotype 1) | Chromosome | 08 Jan 2025 | Genomics of Brazilian Biodiversity | 3,071,794,592 | 56.95 | secondary | mammals |
| 294 | GCA_047301625.1 | GCA_047301625.1_ASM4730162v1 | Choerodon schoenleinii | blackspot tuskfish (SL-2024 2025) | 241275 | SAMN46014618 | haploid | Chromosome | 30 Jan 2025 | Guangdong Ocean University | 865,958,939 | 30.05 | primary | fish |
| 295 | GCA_047511565.1 | GCA_047511565.1_fPolLow2.hap1 | Polymixia lowei | beardfish (hap1 2025) | 143326 | SAMN45134564 | haploid (haplotype 1) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 675,344,950 | 30.33 | primary | fish |
| 296 | GCA_047511595.1 | GCA_047511595.1_fPolLow2.hap2 | Polymixia lowei | beardfish (hap2 2025) | 143326 | SAMN45134564 | haploid (haplotype 2) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 671,709,512 | 30.40 | secondary | fish |
| 297 | GCA_047511605.1 | GCA_047511605.1_mCasCan1.hap2 | Castor canadensis | American beaver (hap2 2025) | 51338 | SAMN45812786 | haploid (haplotype 2) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 2,764,863,784 | 35.89 | secondary | mammals |
| 298 | GCA_047511655.1 | GCA_047511655.1_mCasCan1.hap1 | Castor canadensis | American beaver (hap1 2025) | 51338 | SAMN45812786 | haploid (haplotype 1) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 2,828,089,101 | 35.39 | primary | mammals |
| 299 | GCA_047512175.1 | GCA_047512175.1_mMarFla1.hap2 | Marmota flaviventris | yellow-bellied marmot (hap2 2025) | 93162 | SAMN45932315 | haploid (haplotype 2) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 2,467,036,054 | 33.41 | secondary | mammals |
| 300 | GCA_047715955.1 | GCA_047715955.1_rBraPum1.hap2 | Bradypodion pumilum | lizards B.pumilum (Western Cape Province hap2 2025) | 179887 | SAMN35825189 | haploid | Chromosome | 11 Feb 2025 | Vertebrate Genomes Project | 2,479,053,460 | 56.66 | secondary | reptiles |
| 301 | GCA_047715975.1 | GCA_047715975.1_rBraPum1.hap1 | Bradypodion pumilum | lizards B.pumilum (Western Cape Province hap1 2025) | 179887 | SAMN35825189 | haploid | Chromosome | 11 Feb 2025 | Vertebrate Genomes Project | 2,467,904,324 | 56.48 | primary | reptiles |
| 302 | GCA_047774235.1 | GCA_047774235.1_bZonAlb1.hap2 | Zonotrichia albicollis | white-throated sparrow (hap2 2025) | 44394 | SAMN46390924 | haploid (haplotype 2) | Chromosome | 18 Feb 2025 | Vertebrate Genomes Project | 1,176,404,578 | 27.21 | secondary | birds |
| 303 | GCA_047830755.1 | GCA_047830755.1_bZonAlb1.hap1 | Zonotrichia albicollis | white-throated sparrow (hap1 2025) | 44394 | SAMN46390924 | haploid (haplotype 1) | Chromosome | 18 Feb 2025 | Vertebrate Genomes Project | 1,278,938,765 | 24.31 | primary | birds |
| 304 | GCA_047922975.1 | GCA_047922975.1_bEudEle1_v1.hap2 | Eudromia elegans | elegant crested-tinamou (YG026_01 alternate hap 2025) | 8805 | SAMN46865137 | alternate-pseudohaplotype | Chromosome | 20 Feb 2025 | University of Copenhagen | 965,723,864 | 23.99 | secondary | birds |
| 305 | GCA_047922985.1 | GCA_047922985.1_bEudEle1_v1.hap1 | Eudromia elegans | elegant crested-tinamou (YG026_01 primary hap 2025) | 8805 | SAMN46865137 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Feb 2025 | University of Copenhagen | 1,109,691,113 | 13.96 | primary | birds |
| 306 | GCA_048126345.1 | GCA_048126345.1_UniMelb_NotTyph_v1.0 | Notoryctes typhlops | marsupial mole (Waite Creek area ABTC07570 2025) | 37699 | SAMN45131536 | haploid | Scaffold | 26 Feb 2025 | Oz Mammals Genomics | 3,845,140,558 | 47.20 | primary | mammals |
| 307 | GCA_048126635.1 | GCA_048126635.1_SpiSpi1_v1.hap1 | Spinachia spinachia | sea stickleback (SK-2024b hap1 2025) | 206126 | SAMN36735485 | haploid (haplotype 1) | Chromosome | 27 Feb 2025 | University of Copenhagen | 407,561,107 | 14.07 | primary | fish |
| 308 | GCA_048126745.1 | GCA_048126745.1_DamDam1_v1.mat | Dama dama | fallow deer (maternal hap SK-2024 2025) | 30532 | SAMN36735489 | haploid (maternal haplotype of diploid) | Chromosome | 27 Feb 2025 | University of Copenhagen | 2,723,325,442 | 41.57 | primary | mammals |
| 309 | GCA_048127045.1 | GCA_048127045.1_DamDam1_v1.pat | Dama dama | fallow deer (paternal hap SK-2024 2025) | 30532 | SAMN36735489 | haploid (paternal haplotype of diploid) | Chromosome | 27 Feb 2025 | University of Copenhagen | 2,380,677,270 | 38.56 | secondary | mammals |
| 310 | GCA_048127205.1 | GCA_048127205.1_SpiSpi1_v1.hap2 | Spinachia spinachia | sea stickleback (SK-2024b hap2 2025) | 206126 | SAMN36735485 | haploid (haplotype 2) | Chromosome | 27 Feb 2025 | University of Copenhagen | 406,020,468 | 23.19 | secondary | fish |
| 311 | GCA_048128715.1 | GCA_048128715.1_fSymNem1.1_haplotype_2 | Symphorus nematophorus | chinamanfish (OG11 2025) | 396798 | SAMN41179601 | haploid (haplotype 2) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 1,079,709,985 | 46.06 | secondary | fish |
| 312 | GCA_048128725.1 | GCA_048128725.1_fSymNem1.1_haplotype_1 | Symphorus nematophorus | chinamanfish (OG11 2025) | 396798 | SAMN41179601 | haploid (haplotype 1) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 1,079,363,760 | 32.88 | primary | fish |
| 313 | GCA_048128805.1 | GCA_048128805.1_fCenGer3.hap1.cur.20231027 | Centroberyx gerrardi | bight redfish (hap1 2025) | 166262 | SAMN41769328 | haploid (haplotype 1) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 779,177,424 | 31.86 | primary | fish |
| 314 | GCA_048129025.1 | GCA_048129025.1_fCaeTer1.1_haplotype_2 | Caesio teres | yellow and blueback fusilier (OG672 2025) | 1311420 | SAMN41769331 | haploid (haplotype 2) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 1,033,416,279 | 31.40 | secondary | fish |
| 315 | GCA_048129055.1 | GCA_048129055.1_fCaeTer1.1_haplotype_1 | Caesio teres | yellow and blueback fusilier (OG672 2025) | 1311420 | SAMN41769331 | haploid (haplotype 1) | Chromosome | 28 Feb 2025 | (n/a) | 1,078,118,487 | 33.44 | primary | fish |
| 316 | GCA_048129065.1 | GCA_048129065.1_fEpiMut1.hap2.cur.20240206 | Epinephelus rankini | Rankin cod (hap2 2025) | 2930458 | SAMN41769322 | haploid (haplotype 2) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 1,018,963,042 | 42.18 | secondary | fish |
| 317 | GCA_048129085.1 | GCA_048129085.1_fCenGer3.hap2.cur.20231027 | Centroberyx gerrardi | bight redfish (hap2 2025) | 166262 | SAMN41769328 | haploid (haplotype 2) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 774,057,239 | 32.03 | secondary | fish |
| 318 | GCA_048129235.1 | GCA_048129235.1_fEpiMut1.hap1.cur.20240206 | Epinephelus rankini | Rankin cod (hap1 2025) | 2930458 | SAMN41769322 | haploid (haplotype 1) | Chromosome | 28 Feb 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 1,035,398,499 | 31.27 | primary | fish |
| 319 | GCA_048164845.1 | GCA_048164845.1_mCanLup2.hap2 | Canis lupus baileyi | Mexican gray wolf (hap2 2025) | 143281 | SAMN46796784 | haploid (haplotype 2) | Chromosome | 27 Feb 2025 | Vertebrate Genomes Project | 2,336,397,564 | 34.24 | secondary | mammals |
| 320 | GCA_048301445.1 | GCA_048301445.1_SynTyp1_v1.hap1 | Syngnathus typhle | broad-nosed pipefish (SK-2024d hap1 2025) | 161592 | SAMN36735486 | haploid (haplotype 1) | Chromosome | 03 Mar 2025 | University of Copenhagen | 368,300,239 | 36.58 | primary | fish |
| 321 | GCA_048301465.1 | GCA_048301465.1_ASM4830146v1 | Aulostomus maculatus | trumpetfish (SK-2024c 2025) | 150449 | SAMN43082348 | haploid (haplotype 1) | Chromosome | 03 Mar 2025 | University of Copenhagen | 662,945,422 | 26.05 | primary | fish |
| 322 | GCA_048301475.1 | GCA_048301475.1_ASM4830147v1 | Aulostomus maculatus | trumpetfish (SK-2024c 2025) | 150449 | SAMN43082348 | haploid (haplotype 2) | Chromosome | 03 Mar 2025 | University of Copenhagen | 669,846,493 | 26.80 | secondary | fish |
| 323 | GCA_048301585.1 | GCA_048301585.1_ASM4830158v1 | Rhinogobio nasutus | bony fish R.nasutus (DBWJ_T2T 2025) | 2590489 | SAMN45903276 | haploid | Chromosome | 03 Mar 2025 | Gansu Fisheries Research Institute | 953,377,980 | 45.29 | primary | fish |
| 324 | GCA_048301605.1 | GCA_048301605.1_SynTyp1_v1.hap2 | Syngnathus typhle | broad-nosed pipefish (SK-2024d hap2 2025) | 161592 | SAMN36735486 | haploid (haplotype 2) | Chromosome | 03 Mar 2025 | University of Copenhagen | 356,339,685 | 34.73 | secondary | fish |
| 325 | GCA_048338725.1 | GCA_048338725.1_T2T_pig1.0 | Sus scrofa | pig (Wuzhishan WZS1 2025) | 9823 | SAMN42780387 | haploid | Complete Genome | 05 Mar 2025 | Chian Agricultural University | 2,633,166,191 | 39.57 | primary | mammals |
| 326 | GCA_048537225.1 | GCA_048537225.1_ASM4853722v1 | Polymixia cf. hollisterae | Bermuda beardfish (OG660 hap1 2025) | 3239838 | SAMN42899157 | haploid (haplotype 1) | Chromosome | 10 Mar 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 722,757,191 | 32.95 | primary | fish |
| 327 | GCA_048537235.1 | GCA_048537235.1_ASM4853723v1 | Polymixia cf. hollisterae | Bermuda beardfish (OG660 hap2 2025) | 3239838 | SAMN42899157 | haploid (haplotype 2) | Chromosome | 10 Mar 2025 | Minderoo OceanOmics Centre at University of the Western Australia | 707,857,291 | 32.19 | secondary | fish |
| 328 | GCA_048544195.1 | GCA_048544195.1_ASM4854419v1 | Menidia menidia | Atlantic silverside (fMenMen1 hap2 2025) | 238744 | SAMN46987722 | haploid | Chromosome | 11 Mar 2025 | University of Copenhagen | 553,547,304 | 28.19 | secondary | fish |
| 329 | GCA_048544215.1 | GCA_048544215.1_fCoiMys1.hap1 | Coilia mystus | Osbeck's grenadier anchovy (Shantou hap1 2025) | 286537 | SAMN46980313 | haploid | Chromosome | 11 Mar 2025 | University of Copenhagen | 803,134,922 | 38.65 | secondary | fish |
| 330 | GCA_048544225.1 | GCA_048544225.1_fCoiMys1.hap2 | Coilia mystus | Osbeck's grenadier anchovy (Shantou hap2 2025) | 286537 | SAMN46980313 | haploid | Chromosome | 11 Mar 2025 | University of Copenhagen | 854,254,650 | 38.31 | primary | fish |
| 331 | GCA_048565335.1 | GCA_048565335.1_aManAur1.hap2 | Mantella aurantiaca | golden mantella (hap2 2025) | 43514 | SAMN46714743 | haploid (haplotype 2) | Chromosome | 12 Mar 2025 | Vertebrate Genomes Project | 3,319,283,846 | 62.55 | secondary | amphibians |
| 332 | GCA_048565345.1 | GCA_048565345.1_aManAur1.hap1 | Mantella aurantiaca | golden mantella (hap1 2025) | 43514 | SAMN46714743 | haploid (haplotype 1) | Chromosome | 12 Mar 2025 | Vertebrate Genomes Project | 3,336,112,499 | 62.16 | primary | amphibians |
| 333 | GCA_048565385.1 | GCA_048565385.1_mSaiBol1.pri | Saimiri boliviensis | Bolivian squirrel monkey (mSaiBol1 primary hap 2025) | 27679 | SAMN46760316 | haploid | Chromosome | 12 Mar 2025 | Vertebrate Genomes Project | 2,747,476,440 | 47.03 | primary | mammals |
| 334 | GCA_048569125.1 | GCA_048569125.1_fDirArg3.hap1 | Diretmus argenteus | silver spinyfin (hap1 2025) | 88682 | SAMN47248252 | haploid (haplotype 1) | Chromosome | 13 Mar 2025 | Vertebrate Genomes Project | 1,517,026,147 | 53.60 | primary | fish |
| 335 | GCA_048569135.1 | GCA_048569135.1_fDirArg3.hap2 | Diretmus argenteus | silver spinyfin (hap2 2025) | 88682 | SAMN47248252 | haploid (haplotype 2) | Scaffold | 13 Mar 2025 | Vertebrate Genomes Project | 1,884,132,620 | 55.04 | secondary | fish |
| 336 | GCA_048569465.1 | GCA_048569465.1_aAnoBae1.hap2 | Anomaloglossus baeobatrachus | frog A.baeobatrachus (hap2 2025) | 238106 | SAMN46966667 | haploid (haplotype 2) | Chromosome | 13 Mar 2025 | Vertebrate Genomes Project | 6,129,031,283 | 77.32 | secondary | amphibians |
| 337 | GCA_048569485.1 | GCA_048569485.1_aAnoBae1.hap1 | Anomaloglossus baeobatrachus | frog A.baeobatrachus (hap1 2025) | 238106 | SAMN46966667 | haploid (haplotype 1) | Chromosome | 13 Mar 2025 | Vertebrate Genomes Project | 6,265,077,250 | 77.47 | primary | amphibians |
| 338 | GCA_048593225.1 | GCA_048593225.1_ASM4859322v1 | Sarcophilus harrisii | Tasmanian devil (McLovin hap1 2025) | 9305 | SAMN47327921 | haploid (haplotype 1) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,244,907,618 | 42.27 | primary | mammals |
| 339 | GCA_048593235.1 | GCA_048593235.1_ASM4859323v1 | Sminthopsis crassicaudata | fat-tailed dunnart (SCR6 hap1 2025) | 9301 | SAMN47327922 | haploid (haplotype 1) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,239,981,553 | 44.27 | primary | mammals |
| 340 | GCA_048593245.1 | GCA_048593245.1_ASM4859324v1 | Dasyurus maculatus | spotted-tailed quoll (Chaos hap2 2025) | 9281 | SAMN47326980 | haploid (haplotype 2) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,066,144,370 | 42.02 | secondary | mammals |
| 341 | GCA_048593285.1 | GCA_048593285.1_ASM4859328v1 | Dasyurus maculatus | spotted-tailed quoll (Chaos hap1 2025) | 9281 | SAMN47326980 | haploid (haplotype 1) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,043,210,118 | 41.99 | primary | mammals |
| 342 | GCA_048593295.1 | GCA_048593295.1_ASM4859329v1 | Sminthopsis crassicaudata | fat-tailed dunnart (SCR6 hap2 2025) | 9301 | SAMN47327922 | haploid (haplotype 2) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,272,501,082 | 44.21 | secondary | mammals |
| 343 | GCA_048593325.1 | GCA_048593325.1_ASM4859332v1 | Sarcophilus harrisii | Tasmanian devil (McLovin hap2 2025) | 9305 | SAMN47327921 | haploid (haplotype 2) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,116,321,655 | 41.45 | secondary | mammals |
| 344 | GCA_048593335.1 | GCA_048593335.1_ASM4859333v1 | Notamacropus eugenii | tammar wallaby (Barry hap1 2025) | 9315 | SAMN47327929 | haploid (haplotype 1) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,349,423,305 | 39.00 | secondary | mammals |
| 345 | GCA_048593345.1 | GCA_048593345.1_ASM4859334v1 | Notamacropus eugenii | tammar wallaby (Barry hap2 2025) | 9315 | SAMN47327929 | haploid (haplotype 2) | Chromosome | 17 Mar 2025 | University of Connecticut | 3,250,186,738 | 38.97 | secondary | mammals |
| 346 | GCA_048628825.1 | GCA_048628825.1_ASM4862882v1 | Menidia menidia | Atlantic silverside (fMenMen1 hap1 2025) | 238744 | SAMN46987722 | haploid (haplotype 1) | Chromosome | 19 Mar 2025 | University of Copenhagen | 571,276,089 | 28.90 | primary | fish |
| 347 | GCA_048771865.1 | GCA_048771865.1_mCteGun2.hap2 | Ctenodactylus gundi | northern gundi (hap2 2025) | 10166 | SAMN47326412 | haploid (haplotype 2) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 2,329,663,899 | 34.10 | secondary | mammals |
| 348 | GCA_048771875.1 | GCA_048771875.1_mCteGun2.hap1 | Ctenodactylus gundi | northern gundi (hap1 2025) | 10166 | SAMN47326412 | haploid (haplotype 1) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 2,184,404,205 | 30.65 | primary | mammals |
| 349 | GCA_048771995.1 | GCA_048771995.1_bTaeGut7.mat | Taeniopygia guttata | zebra finch (bTaeGut7 maternal hap 2025) | 59729 | SAMN47142318 | haploid (maternal haplotype of diploid) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 1,141,165,377 | 23.56 | primary | birds |
| 350 | GCA_048772025.1 | GCA_048772025.1_bTaeGut7.pat | Taeniopygia guttata | zebra finch (bTaeGut7 paternal hap 2025) | 59729 | SAMN47142318 | haploid (paternal haplotype of diploid) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 1,021,668,102 | 22.87 | secondary | birds |
| 351 | GCA_048772815.1 | GCA_048772815.1_mCalLat2.hap1 | Callospermophilus lateralis | golden-mantled ground squirrel (hap1 2025) | 76772 | SAMN47326584 | haploid (haplotype 1) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 4,646,974,320 | 52.74 | primary | mammals |
| 352 | GCA_048772825.1 | GCA_048772825.1_mCalLat2.hap2 | Callospermophilus lateralis | golden-mantled ground squirrel (hap2 2025) | 76772 | SAMN47326584 | haploid (haplotype 2) | Chromosome | 21 Mar 2025 | Vertebrate Genomes Project | 3,349,745,798 | 39.54 | secondary | mammals |
| 353 | GCA_048934315.1 | GCA_048934315.1_UKy_Petmar_22M1.pri1.0 | Petromyzon marinus | sea lamprey (Great Lakes invasive population PM22_M1 primary hap 2025) | 7757 | SAMN46926778 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 Mar 2025 | University of Kentucky | 1,808,332,251 | 68.15 | primary | otherChordates |
| 354 | GCA_049082045.1 | GCA_049082045.1_fCriAus1.1_haplotype_2 | Cristiceps australis | crested weedfish (hap2 OG76 2025) | 879810 | SAMN40589650 | haploid (haplotype 2) | Chromosome | 27 Mar 2025 | (n/a) | 559,096,705 | 29.02 | secondary | fish |
| 355 | GCA_049082185.1 | GCA_049082185.1_fCriAus1.1_haplotype_1 | Cristiceps australis | crested weedfish (hap1 OG76 2025) | 879810 | SAMN40589650 | haploid (haplotype 1) | Chromosome | 27 Mar 2025 | (n/a) | 619,674,967 | 29.97 | primary | fish |
| 356 | GCA_049190655.1 | GCA_049190655.1_fLepSal2.hap2 | Lepidogalaxias salamandroides | salamanderfish (hap2 2025) | 89578 | SAMN47481373 | haploid (haplotype 2) | Chromosome | 31 Mar 2025 | Vertebrate Genomes Project | 742,016,821 | 45.23 | secondary | fish |
| 357 | GCA_049190665.1 | GCA_049190665.1_fLepSal2.hap1 | Lepidogalaxias salamandroides | salamanderfish (hap1 2025) | 89578 | SAMN47481373 | haploid (haplotype 1) | Chromosome | 31 Mar 2025 | Vertebrate Genomes Project | 735,065,728 | 43.46 | primary | fish |
| 358 | GCA_049354655.1 | GCA_049354655.1_calJac240_alt | Callithrix jacchus | white-tufted-ear marmoset (240 alternate hap 2025) | 9483 | SAMN47004743 | alternate-pseudohaplotype | Chromosome | 08 Apr 2025 | University of California Santa Cruz | 2,760,247,778 | 47.02 | secondary | mammals |
| 359 | GCA_049354715.1 | GCA_049354715.1_calJac240_pri | Callithrix jacchus | white-tufted-ear marmoset (240 primary hap 2025) | 9483 | SAMN47004743 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2025 | University of California Santa Cruz | 2,933,409,465 | 42.34 | primary | mammals |
| 360 | GCA_900246225.5 | GCA_900246225.5_fAstCal1.3 | Astatotilapia calliptera | eastern happy (v3 2021) | 8154 | SAMEA104026430 | haploid | Chromosome | 24 Apr 2021 | Wellcome Sanger Institute | 880,445,568 | 35.92 | secondary | fish |
| 361 | GCA_901001165.2 | GCA_901001165.2_fSalTru1.2 | Salmo trutta | river trout (v2 2021) | 8032 | SAMEA994732 | haploid | Chromosome | 24 Apr 2021 | Wellcome Sanger Institute | 2,371,880,186 | 55.89 | primary | fish |
| 362 | GCA_901699155.2 | GCA_901699155.2_bStrTur1.2 | Streptopelia turtur | European turtle dove (v1.2 2021) | 177155 | SAMEA994735 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 May 2021 | Wellcome Sanger Institute | 1,178,816,852 | 10.95 | primary | birds |
| 363 | GCA_901765095.2 | GCA_901765095.2_aMicUni1.2 | Microcaecilia unicolor | tiny Cayenne caecilian (v2 2021) | 1415580 | SAMEA104387962 | haploid | Chromosome | 24 Apr 2021 | Wellcome Sanger Institute | 4,685,939,421 | 68.19 | primary | amphibians |
| 364 | GCA_902686455.2 | GCA_902686455.2_mSciVul1.2 | Sciurus vulgaris | Eurasian red squirrel (v1.2 2020) | 55149 | SAMEA994733 | haploid | Chromosome | 31 Jul 2020 | SC | 2,878,607,543 | 33.75 | primary | mammals |
| 365 | GCA_902713435.2 | GCA_902713435.2_fAciRut3.2_paternal_haplotype | Acipenser ruthenus | sterlet (v2 paternal hap 2022) | 7906 | SAMEA5572864 | haploid | Chromosome | 01 Feb 2022 | Wellcome Sanger Institute | 1,882,648,115 | 45.08 | secondary | fish |
| 366 | GCA_903684855.2 | GCA_903684855.2_fDreTuH1.2 | Danio rerio | zebrafish (WGS:CAHPTB02 2020) | 7955 | SAMEA4760849 | haploid | Chromosome | 31 Jul 2020 | SC | 1,360,506,095 | 60.94 | secondary | fish |
| 367 | GCA_903684865.1 | GCA_903684865.1_fDreABH1.1 | Danio rerio | zebrafish (WGS:CAHPTA01 2020) | 7955 | SAMEA4760846 | haploid | Chromosome | 28 Jun 2020 | SC | 1,354,075,779 | 61.16 | secondary | fish |
| 368 | GCA_903797595.2 | GCA_903797595.2_bEriRub2.2 | Erithacus rubecula | European robin (primary hap 2021) | 37610 | SAMEA4760689 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2021 | Wellcome Sanger Institute | 1,086,738,418 | 15.04 | primary | birds |
| 369 | GCA_903992545.1 | GCA_903992545.1_mPipPip1.1 | Pipistrellus pipistrellus | common pipistrelle (2020) | 59474 | SAMEA994724 | haploid | Chromosome | 06 Aug 2020 | SC | 1,763,439,233 | 32.92 | primary | mammals |
| 370 | GCA_905171665.2 | GCA_905171665.2_fTraTra1.2 | Trachurus trachurus | Atlantic horse mackerel (primary hap 2021) | 36212 | SAMEA7524396 | haploid | Chromosome | 26 Nov 2021 | Wellcome Sanger Institute | 801,243,942 | 32.88 | primary | fish |
| 371 | GCA_905319855.2 | GCA_905319855.2_mCanLor1.2 | Canis lupus | gray wolf (2021) | 9612 | SAMEA7532739 | haploid | Chromosome | 26 Mar 2021 | WELLCOME SANGER INSTITUTE | 2,447,463,909 | 33.04 | primary | mammals |
| 372 | GCA_907165065.1 | GCA_907165065.1_bCapEur3.1 | Caprimulgus europaeus | Eurasian nightjar (primary hap 2021) | 111811 | SAMEA7524394 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 May 2021 | WELLCOME SANGER INSTITUTE | 1,177,791,212 | 12.03 | primary | birds |
| 373 | GCA_910589615.1 | GCA_910589615.1_fTauBub2.1 | Taurulus bubalis | longspined bullhead (.1 primary hap 2021) | 61643 | SAMEA7522994 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Jul 2021 | WELLCOME SANGER INSTITUTE | 615,153,901 | 25.23 | primary | fish |
| 374 | GCA_910591455.2 | GCA_910591455.2_fPhoGun1.2 | Pholis gunnellus | rock gunnel (primary hap 2021) | 56726 | SAMEA7522838 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Nov 2021 | WELLCOME SANGER INSTITUTE | 588,696,950 | 25.63 | primary | fish |
| 375 | GCA_918807975.1 | GCA_918807975.1_kaAplTurb1.1 | Aplidium turbinatum | tunicate A.turbinatum (primary hap 2021) | 2771288 | SAMEA7536566 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Nov 2021 | WELLCOME SANGER INSTITUTE | 605,507,883 | 63.38 | primary | otherChordates |
| 376 | GCA_922990625.1 | GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated | Meles meles | Eurasian badger (2021) | 9662 | SAMEA7524400 | haploid | Scaffold | 18 Dec 2021 | WELLCOME SANGER INSTITUTE | 2,692,729,365 | 37.43 | secondary | mammals |
| 377 | GCA_933228915.1 | GCA_933228915.1_fTelBon1.1 | Telmatherina bonti | bonti-bonti (primary hap 2022) | 446457 | SAMEA8592627 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Mar 2022 | WELLCOME SANGER INSTITUTE | 986,039,709 | 34.07 | primary | fish |
| 378 | GCA_936440315.1 | GCA_936440315.1_fBarBab1.1 | Barbus barbus | barbel (primary hap 2022) | 40830 | SAMEA13335783 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2022 | WELLCOME SANGER INSTITUTE | 1,584,929,904 | 52.50 | primary | fish |
| 379 | GCA_944039275.1 | GCA_944039275.1_fDanRer4.1 | Danio rerio | zebrafish (WGS:CALUEM01 primary hap 2022) | 7955 | SAMEA14088276 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Jun 2022 | WELLCOME SANGER INSTITUTE | 1,413,675,870 | 60.61 | primary | fish |
| 380 | GCA_946808225.1 | GCA_946808225.1_fSilAri3.1 | Silurus aristotelis | Aristotle's catfish (primary hap 2022) | 933932 | SAMEA12595289 | haploid | Chromosome | 15 Sep 2022 | WELLCOME SANGER INSTITUTE | 800,118,513 | 42.36 | primary | fish |
| 381 | GCA_947034865.1 | GCA_947034865.1_fBarBar1.1 | Barbatula barbatula | stone loach (primary hap 2022) | 135647 | SAMEA11296540 | haploid | Chromosome | 07 Oct 2022 | WELLCOME SANGER INSTITUTE | 617,663,352 | 39.89 | primary | fish |
| 382 | GCA_947247035.1 | GCA_947247035.1_rVipUrs1.1 | Vipera ursinii | meadow viper (primary hap 2022) | 103942 | SAMEA12832258 | haploid | Chromosome | 30 Oct 2022 | WELLCOME SANGER INSTITUTE | 1,625,023,540 | 49.83 | primary | reptiles |
| 383 | GCA_947561715.1 | GCA_947561715.1_kaAscMent1.1 | Ascidia mentula | pink sea squirt (2022) | 38561 | SAMEA8724667 | haploid | Chromosome | 11 Dec 2022 | WELLCOME SANGER INSTITUTE | 196,975,169 | 32.01 | primary | otherChordates |
| 384 | GCA_947623445.1 | GCA_947623445.1_kaClaLepa1.1 | Clavelina lepadiformis | light-bulb sea squirt (2022) | 159417 | SAMEA7536527 | haploid | Chromosome | 19 Dec 2022 | WELLCOME SANGER INSTITUTE | 210,089,204 | 33.50 | primary | otherChordates |
| 385 | GCA_947650265.1 | GCA_947650265.1_fSymMel2.1 | Symphodus melops | corkwing wrasse (primary hap 2022) | 171736 | SAMEA12219485 | haploid (principal pseudohaplotype of diploid) | Chromosome | 21 Dec 2022 | WELLCOME SANGER INSTITUTE | 636,368,453 | 28.78 | primary | fish |
| 386 | GCA_948146105.1 | GCA_948146105.1_fSynAcu2.1 | Syngnathus acus | greater pipefish (v2 2023 genbank) | 161584 | SAMEA13854528 | haploid | Chromosome | 18 Jan 2023 | WELLCOME SANGER INSTITUTE | 359,216,277 | 32.03 | secondary | fish |
| 387 | GCA_949152265.1 | GCA_949152265.1_fPhoPho1.1 | Phoxinus phoxinus | Eurasian minnow (primary hap 2023) | 58324 | SAMEA11296539 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 950,498,056 | 49.52 | primary | fish |
| 388 | GCA_949316315.1 | GCA_949316315.1_mMusMuc1.1 | Mus musculus | house mouse (primary hap 2023) | 10090 | SAMEA112251260 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 2,770,968,735 | 45.38 | primary | mammals |
| 389 | GCA_949319135.1 | GCA_949319135.1_fSquCep2.1 | Squalius cephalus | European chub (primary hap 2023) | 8284 | SAMEA11296547 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 1,101,930,522 | 54.10 | primary | fish |
| 390 | GCA_949357685.1 | GCA_949357685.1_fGobGob1.1 | Gobio gobio | gudgeon (primary hap 2023) | 27704 | SAMEA11296538 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 1,460,679,231 | 68.84 | primary | fish |
| 391 | GCA_949357725.1 | GCA_949357725.1_fHypImm3.1 | Hyperoplus immaculatus | greater sand-eel (primary hap 2023) | 1484357 | SAMEA13854416 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 797,804,280 | 42.12 | primary | fish |
| 392 | GCA_949606895.1 | GCA_949606895.1_fNotRos5.1 | Notothenia rossii | marbled rockcod (primary hap 2023) | 101497 | SAMEA12815441 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 1,042,906,029 | 52.08 | primary | fish |
| 393 | GCA_949628215.1 | GCA_949628215.1_bGulAri2.1 | Phalacrocorax aristotelis | European shag (primary hap 2023) | 126867 | SAMEA10059652 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 1,279,134,750 | 13.53 | primary | birds |
| 394 | GCA_949748355.1 | GCA_949748355.1_fMelGel1.1 | Melanostigma gelatinosum | limp eelpout (primary hap 2023) | 1091424 | SAMEA12815492 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 661,975,483 | 29.55 | primary | fish |
| 395 | GCA_949752795.1 | GCA_949752795.1_mHypAmp2.1 | Hyperoodon ampullatus | northern bottlenose whale (primary hap 2023) | 48744 | SAMEA10839125 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 2,828,760,712 | 45.42 | primary | mammals |
| 396 | GCA_949987555.1 | GCA_949987555.1_fBorAnt1.1 | Borostomias antarcticus | large-eye snaggletooth (primary hap 2023) | 473354 | SAMEA8748812 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2023 | WELLCOME SANGER INSTITUTE | 909,249,001 | 50.81 | primary | fish |
| 397 | GCA_949987585.1 | GCA_949987585.1_mPipPyg2.1 | Pipistrellus pygmaeus | soprano pipistrelle (primary hap 2023) | 246814 | SAMEA9921456 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 May 2023 | WELLCOME SANGER INSTITUTE | 1,895,125,685 | 36.46 | primary | mammals |
| 398 | GCA_949987615.1 | GCA_949987615.1_fPolPol2.1 | Pollachius pollachius | pollack (primary hap 2023) | 185739 | SAMEA111562038 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2023 | WELLCOME SANGER INSTITUTE | 606,767,444 | 33.18 | primary | fish |
| 399 | GCA_949987685.1 | GCA_949987685.1_fAmmMar1.1 | Ammodytes marinus | lesser sand-eel (primary hap 2023) | 146480 | SAMEA110137622 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2023 | WELLCOME SANGER INSTITUTE | 777,835,610 | 40.34 | primary | fish |
| 400 | GCA_951216825.1 | GCA_951216825.1_fEleAnt2.1 | Electrona antarctica | Antarctic lanternfish (primary hap 2023) | 206093 | SAMEA8748807 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 May 2023 | WELLCOME SANGER INSTITUTE | 1,427,445,741 | 55.68 | primary | fish |
| 401 | GCA_951394365.1 | GCA_951394365.1_bTetUro1.1 | Tetrao urogallus | western capercaillie (primary hap 2023) | 100830 | SAMEA9654429 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Jun 2023 | WELLCOME SANGER INSTITUTE | 1,013,184,029 | 12.38 | primary | birds |
| 402 | GCA_951394435.1 | GCA_951394435.1_mSteCoe1.1 | Stenella coeruleoalba | striped dolphin (primary hap 2023) | 9737 | SAMEA111380539 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Jun 2023 | WELLCOME SANGER INSTITUTE | 2,691,423,227 | 44.36 | primary | mammals |
| 403 | GCA_951640355.1 | GCA_951640355.1_mEptNil1.1 | Cnephaeus nilssonii | northern bat (primary hap 2023) | 3371016 | SAMEA14098186 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 May 2023 | WELLCOME SANGER INSTITUTE | 2,064,119,045 | 37.29 | primary | mammals |
| 404 | GCA_951799395.1 | GCA_951799395.1_fArgSil1.1 | Argentina silus | greater argentine (primary hap 2023) | 446415 | SAMEA110137623 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 May 2023 | WELLCOME SANGER INSTITUTE | 670,765,936 | 40.44 | primary | fish |
| 405 | GCA_951799975.1 | GCA_951799975.1_fGobNig1.1 | Gobius niger | black goby (primary hap 2023) | 85417 | SAMEA13854149 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 May 2023 | WELLCOME SANGER INSTITUTE | 870,572,126 | 40.54 | primary | fish |
| 406 | GCA_951802725.1 | GCA_951802725.1_fRutRut2.1 | Rutilus rutilus | roach minnow (primary hap 2023) | 48668 | SAMEA11296543 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 May 2023 | WELLCOME SANGER INSTITUTE | 1,100,195,650 | 53.60 | primary | fish |
| 407 | GCA_951804945.1 | GCA_951804945.1_rPodCre2.1 | Podarcis cretensis | Cretan wall lizard (primary hap 2023) | 1330250 | SAMEA12110019 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Jun 2023 | WELLCOME SANGER INSTITUTE | 1,507,627,055 | 44.75 | primary | reptiles |
| 408 | GCA_960531495.1 | GCA_960531495.1_fZeuFab8.1 | Zeus faber | John dory (primary hap 2023) | 64108 | SAMEA111562156 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Jul 2023 | WELLCOME SANGER INSTITUTE | 804,731,948 | 44.89 | primary | fish |
| 409 | GCA_963082525.1 | GCA_963082525.1_bNesMay2.1 | Nesoenas mayeri | pink pigeon (primary hap 2023) | 187126 | SAMEA12922160 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Aug 2023 | WELLCOME SANGER INSTITUTE | 1,183,271,950 | 14.40 | primary | birds |
| 410 | GCA_963082875.1 | GCA_963082875.1_kaCorEumy4.1 | Corella eumyota | orange-tipped seq squirt (primary hap 2023) | 431183 | SAMEA7536466 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Aug 2023 | WELLCOME SANGER INSTITUTE | 129,324,498 | 32.48 | primary | otherChordates |
| 411 | GCA_963210335.1 | GCA_963210335.1_bFalPun1.1 | Falco punctatus | Mauritius kestrel (primary hap 2023) | 148596 | SAMEA14356472 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Aug 2023 | WELLCOME SANGER INSTITUTE | 1,279,277,844 | 14.14 | primary | birds |
| 412 | GCA_963264785.1 | GCA_963264785.1_bPsiEch3.1 | Psittacula echo | Mauritius parakeet (primary hap 2023) | 232653 | SAMEA12361725 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Aug 2023 | WELLCOME SANGER INSTITUTE | 1,203,831,919 | 16.89 | primary | birds |
| 413 | GCA_963280865.1 | GCA_963280865.1_fGymBra2.1 | Gymnoscopelus braueri | Brauer's lanternfish (primary hap 2023) | 948025 | SAMEA12815494 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Aug 2023 | WELLCOME SANGER INSTITUTE | 1,367,984,568 | 56.24 | primary | fish |
| 414 | GCA_963383615.1 | GCA_963383615.1_fLipPho2.1 | Lipophrys pholis | shanny (primary hap 2023) | 56720 | SAMEA7522844 | haploid | Chromosome | 26 Aug 2023 | WELLCOME SANGER INSTITUTE | 768,243,328 | 29.07 | primary | fish |
| 415 | GCA_963383645.1 | GCA_963383645.1_mMusAve1.1 | Muscardinus avellanarius | hazel dormouse (primary hap 2023) | 39082 | SAMEA110180654 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Aug 2023 | WELLCOME SANGER INSTITUTE | 2,497,520,702 | 43.99 | primary | mammals |
| 416 | GCA_963422515.1 | GCA_963422515.1_fBleOce1.1 | Blennius ocellaris | butterfly blenny (primary hap 2023) | 195075 | SAMEA112788961 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Sep 2023 | WELLCOME SANGER INSTITUTE | 728,745,255 | 32.58 | primary | fish |
| 417 | GCA_963454915.1 | GCA_963454915.1_fGymMic1.1 | Gymnoscopelus microlampas | minispotted lanternfish (primary hap 2023) | 1090481 | SAMEA12815435 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Sep 2023 | WELLCOME SANGER INSTITUTE | 1,318,656,016 | 47.09 | primary | fish |
| 418 | GCA_963455305.1 | GCA_963455305.1_mPleAur1.1 | Plecotus auritus | brown big-eared bat (primary hap 2023) | 61862 | SAMEA110056142 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 2,163,221,563 | 40.04 | primary | mammals |
| 419 | GCA_963455335.1 | GCA_963455335.1_mMarMar1.1 | Martes martes | European pine marten (primary hap 2023) | 29065 | SAMEA14268932 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 2,484,650,161 | 32.75 | primary | mammals |
| 420 | GCA_963457625.1 | GCA_963457625.1_fCycLum2.1 | Cyclopterus lumpus | lumpfish (primary hap v2.1 2023 genbank) | 8103 | SAMEA112789128 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 586,296,809 | 30.29 | secondary | fish |
| 421 | GCA_963457635.1 | GCA_963457635.1_fMicVar1.1 | Microchirus variegatus | thickback sole (primary hap 2023) | 90074 | SAMEA12219470 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 724,694,306 | 39.83 | primary | fish |
| 422 | GCA_963457725.1 | GCA_963457725.1_fSprSpr1.1 | Sprattus sprattus | European sprat (primary hap 2023) | 196075 | SAMEA111562173 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 840,332,306 | 38.43 | primary | fish |
| 423 | GCA_963513975.1 | GCA_963513975.1_bFriCoe1.1 | Fringilla coelebs | chaffinch (primary hap 2023) | 37598 | SAMEA9359753 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Sep 2023 | WELLCOME SANGER INSTITUTE | 1,209,243,761 | 17.01 | primary | birds |
| 424 | GCA_963514005.1 | GCA_963514005.1_sRajBra1.1 | Raja brachyura | blonde ray (primary hap 2023) | 223862 | SAMEA110450105 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Sep 2023 | WELLCOME SANGER INSTITUTE | 2,700,467,673 | 66.30 | primary | sharks |
| 425 | GCA_963514085.1 | GCA_963514085.1_fCheLab1.1 | Chelon labrosus | thicklip grey mullet (primary hap 2023) | 48171 | SAMEA111562027 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Sep 2023 | WELLCOME SANGER INSTITUTE | 717,420,143 | 28.89 | primary | fish |
| 426 | GCA_963514095.1 | GCA_963514095.1_fEutGur1.1 | Eutrigla gurnardus | grey gurnard (primary hap 2023) | 426098 | SAMEA111562159 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Sep 2023 | WELLCOME SANGER INSTITUTE | 680,483,561 | 35.71 | primary | fish |
| 427 | GCA_963675345.1 | GCA_963675345.1_kaTriClin1.1 | Trididemnum clinides | tunicate T.clinides (primary hap 2023) | 641091 | SAMEA9873882 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Dec 2023 | WELLCOME SANGER INSTITUTE | 906,935,117 | 36.57 | primary | otherChordates |
| 428 | GCA_963691815.1 | GCA_963691815.1_fEchVip8.1 | Echiichthys vipera | lesser weever (primary hap 2023) | 94984 | SAMEA112765695 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Dec 2023 | WELLCOME SANGER INSTITUTE | 800,398,249 | 38.25 | primary | fish |
| 429 | GCA_963693515.1 | GCA_963693515.1_mPipNat.pri | Pipistrellus nathusii | Nathusius's pipistrelle (primary hap 2024) | 59473 | SAMEA114653171 | haploid | Chromosome | 07 Feb 2024 | Leibniz Institute for Zoo and Wildlife Research | 1,804,478,338 | 35.23 | secondary | mammals |
| 430 | GCA_963854745.1 | GCA_963854745.1_fScoMax1.1 | Scophthalmus maximus | turbot (primary hap 2023) | 52904 | SAMEA110450106 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Dec 2023 | WELLCOME SANGER INSTITUTE | 550,297,089 | 25.96 | primary | fish |
| 431 | GCA_963921485.1 | GCA_963921485.1_norwegian_landrace | Sus scrofa | pig (Norwegian landrace 2024) | 9823 | SAMEA115082662 | haploid | Chromosome | 11 Jan 2024 | NORWEGIAN UNIVERSITY OF LIFE SCIENCES | 2,633,804,377 | 39.60 | secondary | mammals |
| 432 | GCA_963921795.1 | GCA_963921795.1_fNanAch1.1 | Nannobrachium achirus | lantern fish (primary hap 2024) | 473322 | SAMEA12815432 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Feb 2024 | WELLCOME SANGER INSTITUTE | 1,658,848,640 | 54.08 | primary | fish |
| 433 | GCA_963924005.1 | GCA_963924005.1_fProBol1.1 | Protomyctophum bolini | Bolin's lanternfish (primary hap 2024) | 443714 | SAMEA12815434 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Jan 2024 | WELLCOME SANGER INSTITUTE | 1,148,224,649 | 47.04 | primary | fish |
| 434 | GCA_963924515.1 | GCA_963924515.1_mVesMur1.1 | Vespertilio murinus | particolored bat (primary hap 2024) | 59485 | SAMEA112247422 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Jan 2024 | WELLCOME SANGER INSTITUTE | 1,925,577,803 | 37.48 | primary | mammals |
| 435 | GCA_963924565.1 | GCA_963924565.1_kaAscAspe10.1 | Ascidiella aspersa | tunicate A.aspersa (primary hap 2024) | 201961 | SAMEA110449820 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Jan 2024 | WELLCOME SANGER INSTITUTE | 308,571,401 | 35.09 | primary | otherChordates |
| 436 | GCA_963924665.1 | GCA_963924665.1_mMicMin1.1 | Micromys minutus | European harvest mouse (primary hap 2024) | 13151 | SAMEA112468042 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Jan 2024 | WELLCOME SANGER INSTITUTE | 2,651,787,409 | 42.52 | primary | mammals |
| 437 | GCA_963932225.1 | GCA_963932225.1_bLarFus1.1 | Larus fuscus | lesser black-backed gull (primary hap 2024) | 8915 | SAMEA112468039 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Feb 2024 | WELLCOME SANGER INSTITUTE | 1,324,286,540 | 27.18 | primary | birds |
| 438 | GCA_963969265.1 | GCA_963969265.1_fRhaChi2.1 | Rhamphochromis sp. chilingali | Malawi cichlid R.sp.'chilingali' (2024) | 454631 | SAMEA112818853 | haploid | Chromosome | 26 Feb 2024 | WELLCOME SANGER INSTITUTE | 921,184,210 | 38.20 | primary | fish |
| 439 | GCA_963971535.1 | GCA_963971535.1_fNotCoa1.1 | Notolepis coatsorum | Antarctic jonasfish (primary hap 2024) | 948063 | SAMEA8748806 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Mar 2024 | WELLCOME SANGER INSTITUTE | 3,427,809,033 | 68.42 | primary | fish |
| 440 | GCA_963989245.1 | GCA_963989245.1_fNanAnt1.1 | Nansenia antarctica | pencil smelt N.antarctica (primary hap 2024) | 443705 | SAMEA8748805 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 Mar 2024 | WELLCOME SANGER INSTITUTE | 1,085,794,659 | 48.79 | primary | fish |
| 441 | GCA_963989345.1 | GCA_963989345.1_bClaHye2.1 | Clangula hyemalis | long-tailed duck (primary hap 2024) | 197941 | SAMEA112468035 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Mar 2024 | WELLCOME SANGER INSTITUTE | 1,206,104,048 | 26.17 | primary | birds |
| 442 | GCA_963993115.1 | GCA_963993115.1_fAbrBra2.1 | Abramis brama | common bream (primary hap 2024) | 38527 | SAMEA11296536 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Mar 2024 | WELLCOME SANGER INSTITUTE | 1,108,218,292 | 48.57 | primary | fish |
| 443 | GCA_964030765.1 | GCA_964030765.1_fMicPou1.1 | Micromesistius poutassou | blue whiting (primary hap 2024) | 81636 | SAMEA111457552 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Apr 2024 | WELLCOME SANGER INSTITUTE | 520,636,573 | 33.91 | primary | fish |
| 444 | GCA_964034855.1 | GCA_964034855.1_bAnsBra1.1 | Anser brachyrhynchus | pink-footed goose (primary hap 2024) | 132585 | SAMEA112468040 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Apr 2024 | WELLCOME SANGER INSTITUTE | 1,287,337,719 | 20.21 | primary | birds |
| 445 | GCA_964035555.1 | GCA_964035555.1_bNetRuf1.1 | Netta rufina | red-crested pochard (primary hap 2024) | 30387 | SAMEA112468124 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Apr 2024 | WELLCOME SANGER INSTITUTE | 1,166,978,622 | 14.68 | primary | birds |
| 446 | GCA_964059295.1 | GCA_964059295.1_bNumArq3.hap2.1 | Numenius arquata | Eurasian curlew (hap2 2024) | 31919 | SAMEA112693994 | haploid | Scaffold | 29 May 2024 | WELLCOME SANGER INSTITUTE | 1,198,356,613 | 24.54 | secondary | birds |
| 447 | GCA_964059595.1 | GCA_964059595.1_bBucCla1.1 | Bucephala clangula | common goldeneye (primary hap 2024) | 107022 | SAMEA112468123 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,190,938,797 | 15.68 | primary | birds |
| 448 | GCA_964094495.2 | GCA_964094495.2_mMyoMys1.hap1.1 | Myotis mystacinus | whiskered bat (hap1 2024) | 109479 | SAMEA114250307 | haploid | Chromosome | 12 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,081,199,042 | 37.63 | primary | mammals |
| 449 | GCA_964106205.1 | GCA_964106205.1_mNeoVis2.hap2.1 | Neogale vison | American mink (hap2 2024) | 452646 | SAMEA112468126 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,662,777,898 | 37.60 | secondary | mammals |
| 450 | GCA_964106545.1 | GCA_964106545.1_mNeoVis2.hap1.1 | Neogale vison | American mink (hap1 2024) | 452646 | SAMEA112468126 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,697,147,479 | 39.10 | primary | mammals |
| 451 | GCA_964106635.2 | GCA_964106635.2_rPodPit1.hap2.2 | Podarcis pityusensis | lizards P.pityusensis (rPodPit1.hap2.2 2024) | 74359 | SAMEA114217797 | haploid | Chromosome | 05 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,417,079,496 | 37.15 | secondary | reptiles |
| 452 | GCA_964106645.2 | GCA_964106645.2_rPodPit1.hap1.2 | Podarcis pityusensis | lizards P.pityusensis (rPodPit1.hap1.2 2024) | 74359 | SAMEA114217797 | haploid | Chromosome | 06 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,515,373,509 | 44.72 | primary | reptiles |
| 453 | GCA_964106785.1 | GCA_964106785.1_rPodGai1.hap2.1 | Podarcis gaigeae | Skyros wall lizard (rPodGai1.hap2.1 2024) | 90521 | SAMEA114217796 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,422,314,362 | 37.52 | secondary | reptiles |
| 454 | GCA_964106825.2 | GCA_964106825.2_mVulVul1.hap1.2 | Vulpes vulpes | red fox (hap1 2024) | 9627 | SAMEA113398840 | haploid | Chromosome | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,411,727,275 | 33.01 | primary | mammals |
| 455 | GCA_964106855.1 | GCA_964106855.1_bGruGru1.hap1.1 | Grus grus | Eurasian crane (hap1 2024) | 40816 | SAMEA113398837 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,352,282,554 | 18.19 | primary | birds |
| 456 | GCA_964106895.1 | GCA_964106895.1_bNumArq3.hap1.1 | Numenius arquata | Eurasian curlew (hap1 2024) | 31919 | SAMEA112693994 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,348,876,333 | 15.90 | primary | birds |
| 457 | GCA_964106915.2 | GCA_964106915.2_rPodGai1.hap1.2 | Podarcis gaigeae | Skyros wall lizard (v2 hap1 2024) | 90521 | SAMEA114217796 | haploid | Chromosome | 17 Sep 2024 | WELLCOME SANGER INSTITUTE | 1,514,643,635 | 44.27 | primary | reptiles |
| 458 | GCA_964106925.2 | GCA_964106925.2_mVulVul1.hap2.2 | Vulpes vulpes | red fox (hap2 2024) | 9627 | SAMEA113398840 | haploid | Chromosome | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,398,532,178 | 33.10 | secondary | mammals |
| 459 | GCA_964145185.2 | GCA_964145185.2_mMinSch1.hap2.2 | Miniopterus schreibersii | Schreibers' long-fingered bat (v2 hap2 2025) | 9433 | SAMEA113980738 | haploid | Scaffold | 05 Apr 2025 | WELLCOME SANGER INSTITUTE | 1,699,631,453 | 33.74 | secondary | mammals |
| 460 | GCA_964146895.2 | GCA_964146895.2_mMinSch1.hap1.2 | Miniopterus schreibersii | Schreibers' long-fingered bat (v2 hap1 2025) | 9433 | SAMEA113980738 | haploid | Chromosome | 05 Apr 2025 | WELLCOME SANGER INSTITUTE | 1,850,590,334 | 34.45 | primary | mammals |
| 461 | GCA_964148845.1 | GCA_964148845.1_mMesBid2.hap2.1 | Mesoplodon bidens | Sowerby's beaked whale (hap2 2024) | 48745 | SAMEA112165298 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,732,770,104 | 43.69 | secondary | mammals |
| 462 | GCA_964165515.1 | GCA_964165515.1_mMesBid2.hap1.1 | Mesoplodon bidens | Sowerby's beaked whale (hap1 2024) | 48745 | SAMEA112165298 | haploid | Chromosome | 06 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,999,098,505 | 47.27 | primary | mammals |
| 463 | GCA_964187855.1 | GCA_964187855.1_kmMyxGlut1.1 | Myxine glutinosa | Atlantic hagfish (primary hap 2024) | 7769 | SAMEA12790223 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jun 2024 | WELLCOME SANGER INSTITUTE | 3,057,523,704 | 78.59 | primary | otherChordates |
| 464 | GCA_964187965.1 | GCA_964187965.1_klBraLanc2.hap1.1 | Branchiostoma lanceolatum | amphioxus (hap1.1 2024) | 7740 | SAMEA111562176 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 468,418,021 | 27.66 | secondary | invertebrate |
| 465 | GCA_964188175.1 | GCA_964188175.1_rPodSic1.hap1.1 | Podarcis siculus | Italian wall lizard (rPodSic1.hap1.1 2024) | 65484 | SAMEA115336774 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,571,381,643 | 46.57 | primary | reptiles |
| 466 | GCA_964188305.1 | GCA_964188305.1_rPodBoc1.hap1.1 | Podarcis bocagei | lizards P.bocagei (rPodBoc1.hap1.1 2024) | 90520 | SAMEA115336769 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,615,206,822 | 48.75 | primary | reptiles |
| 467 | GCA_964188315.1 | GCA_964188315.1_rPodMur119.hap1.1 | Podarcis muralis | common wall lizard (hap1 2024) | 64176 | SAMEA115336776 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,522,641,370 | 44.97 | primary | reptiles |
| 468 | GCA_964188325.1 | GCA_964188325.1_rPodBoc1.hap2.1 | Podarcis bocagei | lizards P.bocagei (rPodBoc1.hap2.1 2024) | 90520 | SAMEA115336769 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,473,581,329 | 39.42 | secondary | reptiles |
| 469 | GCA_964188335.1 | GCA_964188335.1_bAnaPla2.hap2.1 | Anas platyrhynchos | mallard (hap2 2024) | 8839 | SAMEA113398833 | haploid | Scaffold | 19 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,136,573,142 | 26.25 | secondary | birds |
| 470 | GCA_964188345.1 | GCA_964188345.1_bAnaPla2.hap1.1 | Anas platyrhynchos | mallard (hap1 2024) | 8839 | SAMEA113398833 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,300,248,985 | 21.79 | primary | birds |
| 471 | GCA_964188355.1 | GCA_964188355.1_bButBut1.hap1.1 | Buteo buteo | common buzzard (bButBut1.hap1.1 2024) | 30397 | SAMEA114594453 | haploid | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,303,700,921 | 14.18 | primary | birds |
| 472 | GCA_964188365.1 | GCA_964188365.1_rPodMur119.hap2.1 | Podarcis muralis | common wall lizard (hap2 2024) | 64176 | SAMEA115336776 | haploid | Scaffold | 19 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,433,931,530 | 37.85 | secondary | reptiles |
| 473 | GCA_964188375.1 | GCA_964188375.1_bButBut1.hap2.1 | Buteo buteo | common buzzard (bButBut1.hap2.1 2024) | 30397 | SAMEA114594453 | haploid | Scaffold | 19 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,330,554,072 | 25.08 | secondary | birds |
| 474 | GCA_964188395.1 | GCA_964188395.1_rPodSic1.hap2.1 | Podarcis siculus | Italian wall lizard (rPodSic1.hap2.1 2024) | 65484 | SAMEA115336774 | haploid | Scaffold | 19 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,455,930,776 | 38.73 | secondary | reptiles |
| 475 | GCA_964188405.1 | GCA_964188405.1_fProPar1.1 | Protomyctophum parallelum | parallel lanternfish (primary hap 2024) | 1091426 | SAMEA12815440 | haploid (principal pseudohaplotype of diploid) | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,235,328,005 | 53.94 | primary | fish |
| 476 | GCA_964188415.1 | GCA_964188415.1_fProPar1.1_alternate_haplotype | Protomyctophum parallelum | parallel lanternfish (alternate hap 2024) | 1091426 | SAMEA12815440 | alternate-pseudohaplotype | Chromosome | 21 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,013,731,500 | 46.52 | secondary | fish |
| 477 | GCA_964194105.1 | GCA_964194105.1_mSpeCit3.1 | Spermophilus citellus | European suslik (primary hap 2024) | 9997 | SAMEA10332752 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Jun 2024 | WELLCOME SANGER INSTITUTE | 3,090,049,053 | 41.35 | primary | mammals |
| 478 | GCA_964194135.1 | GCA_964194135.1_mTalEur1.hap1.1 | Talpa europaea | European mole (hap1 2024) | 9375 | SAMEA112468127 | haploid | Chromosome | 28 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,061,000,977 | 32.53 | primary | mammals |
| 479 | GCA_964194155.1 | GCA_964194155.1_sCetMax3.hap1.1 | Cetorhinus maximus | basking shark (sCetMax3.hap1.1 2024) | 57982 | SAMEA113902670 | haploid | Chromosome | 28 Jun 2024 | WELLCOME SANGER INSTITUTE | 3,993,866,540 | 65.99 | primary | sharks |
| 480 | GCA_964194165.1 | GCA_964194165.1_sCetMax3.hap2.1 | Cetorhinus maximus | basking shark (sCetMax3.hap2.1 2024) | 57982 | SAMEA113902670 | haploid | Scaffold | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 3,817,333,378 | 67.08 | secondary | sharks |
| 481 | GCA_964194185.1 | GCA_964194185.1_mRhiHip2.hap1.1 | Rhinolophus hipposideros | lesser horseshoe bat (hap1 2024) | 77218 | SAMEA113980802 | haploid | Chromosome | 28 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,171,328,640 | 33.62 | primary | mammals |
| 482 | GCA_964194205.1 | GCA_964194205.1_mTalEur1.hap2.1 | Talpa europaea | European mole (hap2 2024) | 9375 | SAMEA112468127 | haploid | Scaffold | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,056,471,431 | 33.58 | secondary | mammals |
| 483 | GCA_964194215.1 | GCA_964194215.1_mRhiHip2.hap2.1 | Rhinolophus hipposideros | lesser horseshoe bat (hap2 2024) | 77218 | SAMEA113980802 | haploid | Scaffold | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 2,240,459,116 | 34.27 | secondary | mammals |
| 484 | GCA_964194405.1 | GCA_964194405.1_rVipBer3.hap2.1 | Vipera berus | adder (hap2 2024) | 31155 | SAMEA114293681 | haploid | Scaffold | 27 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,476,666,783 | 48.46 | secondary | reptiles |
| 485 | GCA_964194415.1 | GCA_964194415.1_rVipBer3.hap1.1 | Vipera berus | adder (hap1 2024) | 31155 | SAMEA114293681 | haploid | Chromosome | 28 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,695,017,208 | 50.49 | primary | reptiles |
| 486 | GCA_964195595.2 | GCA_964195595.2_bCalBor7.hap1.2 | Calonectris borealis | Cory's shearwater (hap1.2 2024) | 1323832 | SAMEA114294356 | haploid | Chromosome | 24 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,366,205,003 | 24.91 | primary | birds |
| 487 | GCA_964195625.1 | GCA_964195625.1_mMyoMys1.hap2.1 | Myotis mystacinus | whiskered bat (hap2 2024) | 109479 | SAMEA114250307 | haploid | Chromosome | 30 Jun 2024 | WELLCOME SANGER INSTITUTE | 1,943,289,057 | 36.81 | secondary | mammals |
| 488 | GCA_964196065.2 | GCA_964196065.2_bCalBor7.hap2.2 | Calonectris borealis | Cory's shearwater (hap2.2 2024) | 1323832 | SAMEA114294356 | haploid | Chromosome | 23 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,211,470,109 | 23.68 | secondary | birds |
| 489 | GCA_964197995.1 | GCA_964197995.1_fScaEry2.hap1.1 | Scardinius erythrophthalmus | rudd (fScaEry2.hap1.1 2024) | 58319 | SAMEA11296541 | haploid | Chromosome | 10 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,229,666,150 | 56.16 | primary | fish |
| 490 | GCA_964198595.1 | GCA_964198595.1_kcLamFluv1.1 | Lampetra fluviatilis | European river lamprey (primary hap 2024) | 7748 | SAMEA111528664 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,042,475,189 | 56.51 | primary | otherChordates |
| 491 | GCA_964199755.1 | GCA_964199755.1_bLarMic1.1 | Larus michahellis | yellow-legged gull (primary hap 2024) | 119627 | SAMEA114211328 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,405,581,498 | 29.78 | primary | birds |
| 492 | GCA_964204655.1 | GCA_964204655.1_aTriCri1.1 | Triturus cristatus | warty newt (primary hap 2024) | 8323 | SAMEA112468129 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jul 2024 | WELLCOME SANGER INSTITUTE | 22,324,633,092 | 50.89 | primary | amphibians |
| 493 | GCA_964204865.1 | GCA_964204865.1_kaStyClav1.hap1.1 | Styela clava | tunicate S.clava (kaStyClav1.hap1.1 2024) | 7725 | SAMEA7536473 | haploid | Chromosome | 27 Jul 2024 | WELLCOME SANGER INSTITUTE | 377,969,001 | 38.35 | primary | otherChordates |
| 494 | GCA_964204955.1 | GCA_964204955.1_kaStyClav1.hap2.1 | Styela clava | tunicate S.clava (kaStyClav1.hap2.1 2024) | 7725 | SAMEA7536473 | haploid | Scaffold | 27 Jul 2024 | WELLCOME SANGER INSTITUTE | 381,580,332 | 39.21 | secondary | otherChordates |
| 495 | GCA_964205295.1 | GCA_964205295.1_aBomVar4.paternal.1 | Bombina variegata | yellow-bellied toad (paternal hap 2024) | 8348 | SAMEA112651403 | haploid | Chromosome | 29 Jul 2024 | WELLCOME SANGER INSTITUTE | 9,369,791,316 | 70.82 | primary | amphibians |
| 496 | GCA_964205305.1 | GCA_964205305.1_aBomVar4.maternal.1 | Bombina variegata | yellow-bellied toad (maternal hap 2024) | 8348 | SAMEA112651403 | haploid | Chromosome | 29 Jul 2024 | WELLCOME SANGER INSTITUTE | 9,112,230,460 | 70.74 | secondary | amphibians |
| 497 | GCA_964211785.1 | GCA_964211785.1_bAnsAns1.hap2.1 | Anser anser | Domestic goose (bAnsAns1.hap2.1 2024) | 8843 | SAMEA113398854 | haploid | Chromosome | 31 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,168,290,161 | 26.78 | secondary | birds |
| 498 | GCA_964211795.1 | GCA_964211795.1_bAytFer1.hap2.1 | Aythya ferina | common pochard (bAytFer1.hap2.1 2024) | 219593 | SAMEA112468034 | haploid | Scaffold | 30 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,103,588,439 | 25.38 | secondary | birds |
| 499 | GCA_964211825.1 | GCA_964211825.1_bAytFer1.hap1.1 | Aythya ferina | common pochard (bAytFer1.hap1.1 2024) | 219593 | SAMEA112468034 | haploid | Chromosome | 31 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,252,319,576 | 19.38 | primary | birds |
| 500 | GCA_964211835.1 | GCA_964211835.1_bAnsAns1.hap1.1 | Anser anser | Domestic goose (bAnsAns1.hap1.1 2024) | 8843 | SAMEA113398854 | haploid | Chromosome | 31 Jul 2024 | WELLCOME SANGER INSTITUTE | 1,313,455,045 | 20.75 | primary | birds |
| 501 | GCA_964212025.2 | GCA_964212025.2_mMyoNat1.hap2.2 | Myotis nattereri | Natterer's bat (hap2.2 2025) | 109481 | SAMEA114614248 | haploid | Scaffold | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,932,610,702 | 38.23 | secondary | mammals |
| 502 | GCA_964212035.2 | GCA_964212035.2_mMyoNat1.hap1.2 | Myotis nattereri | Natterer's bat (hap1.2 2025) | 109481 | SAMEA114614248 | haploid | Chromosome | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 2,138,592,721 | 39.05 | primary | mammals |
| 503 | GCA_964213995.1 | GCA_964213995.1_sMusAst1.hap1.1 | Mustelus asterias | starry smooth-hound (sMusAst1.hap1.1 2024) | 112232 | SAMEA114298637 | haploid | Chromosome | 22 Aug 2024 | WELLCOME SANGER INSTITUTE | 3,679,792,345 | 65.58 | primary | sharks |
| 504 | GCA_964214025.1 | GCA_964214025.1_sMusAst1.hap2.1 | Mustelus asterias | starry smooth-hound (sMusAst1.hap2.1 2024) | 112232 | SAMEA114298637 | haploid | Scaffold | 10 Aug 2024 | WELLCOME SANGER INSTITUTE | 3,476,679,425 | 53.51 | secondary | sharks |
| 505 | GCA_964234715.1 | GCA_964234715.1_rPodMel1.hap1.1 | Podarcis melisellensis | lizards P.melisellensis (rPodMel1.hap1.1 2024) | 65482 | SAMEA115336775 | haploid | Chromosome | 31 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,574,923,724 | 46.82 | primary | reptiles |
| 506 | GCA_964234825.1 | GCA_964234825.1_rPodMel1.hap2.1 | Podarcis melisellensis | lizards P.melisellensis (rPodMel1.hap2.1 2024) | 65482 | SAMEA115336775 | haploid | Chromosome | 31 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,437,044,901 | 37.90 | secondary | reptiles |
| 507 | GCA_964237395.1 | GCA_964237395.1_bGalChl1.hap2.1 | Gallinula chloropus | common moorhen (bGalChl1.hap2.1 2024) | 9123 | SAMEA113398958 | haploid | Scaffold | 29 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,208,559,276 | 22.35 | secondary | birds |
| 508 | GCA_964237585.1 | GCA_964237585.1_bGalChl1.hap1.1 | Gallinula chloropus | common moorhen (bGalChl1.hap1.1 2024) | 9123 | SAMEA113398958 | haploid | Chromosome | 31 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,282,411,533 | 19.18 | primary | birds |
| 509 | GCA_964251985.1 | GCA_964251985.1_rPodErh1.hap2.1 | Podarcis erhardii | lizards P.erhardii (rPodErh1.hap2.1 2024) | 140042 | SAMEA115336771 | haploid | Scaffold | 29 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,477,748,000 | 37.96 | secondary | reptiles |
| 510 | GCA_964252035.1 | GCA_964252035.1_rPodErh1.hap1.1 | Podarcis erhardii | lizards P.erhardii (rPodErh1.hap1.1 2024) | 140042 | SAMEA115336771 | haploid | Chromosome | 31 Aug 2024 | WELLCOME SANGER INSTITUTE | 1,495,994,634 | 44.82 | primary | reptiles |
| 511 | GCA_964261635.1 | GCA_964261635.1_aLisHel1.1 | Lissotriton helveticus | palmate newt (primary hap 2024) | 256425 | SAMEA110240860 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 Oct 2024 | WELLCOME SANGER INSTITUTE | 23,170,028,842 | 63.58 | primary | amphibians |
| 512 | GCA_964263255.1 | GCA_964263255.1_aLisVul1.1 | Lissotriton vulgaris | common newt (primary hap 2024) | 8324 | SAMEA110240861 | haploid (principal pseudohaplotype of diploid) | Chromosome | 17 Oct 2024 | WELLCOME SANGER INSTITUTE | 24,226,223,864 | 63.80 | primary | amphibians |
| 513 | GCA_964263835.1 | GCA_964263835.1_fCorLav1.hap2.1 | Coregonus lavaretus | common whitefish (fCorLav1.hap2.1 2024) | 59291 | SAMEA111528661 | haploid | Scaffold | 15 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,352,365,286 | 61.14 | secondary | fish |
| 514 | GCA_964263955.1 | GCA_964263955.1_fCorLav1.hap1.1 | Coregonus lavaretus | common whitefish (fCorLav1.hap1.1 2024) | 59291 | SAMEA111528661 | haploid | Chromosome | 15 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,842,862,595 | 62.01 | primary | fish |
| 515 | GCA_964264875.2 | GCA_964264875.2_mNycLei1.hap1.2 | Nyctalus leisleri | lesser noctule (v2 hap1 2025) | 59465 | SAMEA114250308 | haploid | Chromosome | 03 Apr 2025 | WELLCOME SANGER INSTITUTE | 2,226,338,041 | 42.54 | primary | mammals |
| 516 | GCA_964264895.2 | GCA_964264895.2_mNycLei1.hap2.2 | Nyctalus leisleri | lesser noctule (v2 hap2 2025) | 59465 | SAMEA114250308 | haploid | Scaffold | 02 Apr 2025 | WELLCOME SANGER INSTITUTE | 2,021,249,169 | 40.67 | secondary | mammals |
| 517 | GCA_964266715.1 | GCA_964266715.1_fMicKit1.1 | Microstomus kitt | lemon sole (primary hap 2024) | 106175 | SAMEA114298639 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Sep 2024 | WELLCOME SANGER INSTITUTE | 752,333,918 | 39.40 | primary | fish |
| 518 | GCA_964270875.1 | GCA_964270875.1_rPodFil1.hap2.1 | Podarcis filfolensis | Filfola wall lizard (rPodFil1.hap2.1 2024) | 65481 | SAMEA113403362 | haploid | Scaffold | 30 Sep 2024 | WELLCOME SANGER INSTITUTE | 1,404,018,672 | 36.85 | secondary | reptiles |
| 519 | GCA_964270895.1 | GCA_964270895.1_rPodFil1.hap1.1 | Podarcis filfolensis | Filfola wall lizard (rPodFil1.hap1.1 2024) | 65481 | SAMEA113403362 | haploid | Chromosome | 29 Sep 2024 | WELLCOME SANGER INSTITUTE | 1,506,966,124 | 44.61 | primary | reptiles |
| 520 | GCA_964270905.1 | GCA_964270905.1_mLagAcu1.hap1.1 | Leucopleurus acutus | Atlantic white-sided dolphin (mLagAcu1.hap1.1 2024) | 3371109 | SAMEA114493133 | haploid | Chromosome | 29 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,676,209,414 | 42.45 | primary | mammals |
| 521 | GCA_964270935.1 | GCA_964270935.1_mLagAcu1.hap2.1 | Leucopleurus acutus | Atlantic white-sided dolphin (mLagAcu1.hap2.1 2024) | 3371109 | SAMEA114493133 | haploid | Scaffold | 30 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,422,718,875 | 39.19 | secondary | mammals |
| 522 | GCA_964271855.1 | GCA_964271855.1_mAcoMin1 | Acomys minous | Crete spiny mouse (2024) | 83528 | SAMEA112751364 | haploid | Chromosome | 03 Oct 2024 | Genoscope CEA | 2,350,237,540 | 34.04 | primary | mammals |
| 523 | GCA_964273445.1 | GCA_964273445.1_bStrDea1.hap1.1 | Streptopelia decaocto | Eurasian collared-dove (bStrDea1.hap1.1 2024) | 177147 | SAMEA113398962 | haploid | Chromosome | 04 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,290,957,608 | 21.55 | primary | birds |
| 524 | GCA_964273585.1 | GCA_964273585.1_bStrDea1.hap2.1 | Streptopelia decaocto | Eurasian collared-dove (bStrDea1.hap2.1 2024) | 177147 | SAMEA113398962 | haploid | Chromosome | 04 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,200,501,445 | 25.49 | secondary | birds |
| 525 | GCA_964273705.1 | GCA_964273705.1_rNatHel1.hap1.1 | Natrix helvetica | snake N.helvetica (rNatHel1.hap1.1 2024) | 2025560 | SAMEA114598156 | haploid | Chromosome | 05 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,777,516,490 | 52.38 | primary | reptiles |
| 526 | GCA_964273795.1 | GCA_964273795.1_rNatHel1.hap2.1 | Natrix helvetica | snake N.helvetica (rNatHel1.hap2.1 2024) | 2025560 | SAMEA114598156 | haploid | Scaffold | 04 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,513,526,581 | 43.90 | secondary | reptiles |
| 527 | GCA_964276385.1 | GCA_964276385.1_fGasAcu3.hap2.1 | Gasterosteus aculeatus | three-spined stickleback (hap2 2024) | 69293 | SAMEA11296546 | haploid | Scaffold | 25 Oct 2024 | WELLCOME SANGER INSTITUTE | 457,351,142 | 27.07 | secondary | fish |
| 528 | GCA_964276395.1 | GCA_964276395.1_fGasAcu3.hap1.1 | Gasterosteus aculeatus | three-spined stickleback (hap1 2024) | 69293 | SAMEA11296546 | haploid | Chromosome | 28 Oct 2024 | WELLCOME SANGER INSTITUTE | 511,155,287 | 27.34 | primary | fish |
| 529 | GCA_964289735.1 | GCA_964289735.1_bPhaAeh10.maternal.1 | Phaethon aethereus | red-billed tropicbird (maternal hap 2024) | 37045 | SAMEA8228673 | haploid | Chromosome | 28 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,321,027,743 | 25.01 | primary | birds |
| 530 | GCA_964289755.1 | GCA_964289755.1_bPhaAeh10.paternal.1 | Phaethon aethereus | red-billed tropicbird (paternal hap 2024) | 37045 | SAMEA8228673 | haploid | Scaffold | 25 Oct 2024 | WELLCOME SANGER INSTITUTE | 1,165,860,358 | 24.47 | secondary | birds |
| 531 | GCA_964339955.1 | GCA_964339955.1_mPipHan1.1 | Pipistrellus hanaki | Hanaki's dwarf bat (2024) | 412090 | SAMEA115799862 | haploid | Chromosome | 14 Nov 2024 | Genoscope CEA | 1,892,221,984 | 38.42 | primary | mammals |
| 532 | GCA_964341445.1 | GCA_964341445.1_mMesMir1.hap1.1 | Mesoplodon mirus | True's beaked whale (hap1.1 2024) | 52113 | SAMEA115358965 | haploid | Chromosome | 28 Nov 2024 | WELLCOME SANGER INSTITUTE | 3,442,419,404 | 51.52 | primary | mammals |
| 533 | GCA_964341485.1 | GCA_964341485.1_mMesMir1.hap2.1 | Mesoplodon mirus | True's beaked whale (hap2.1 2024) | 52113 | SAMEA115358965 | haploid | Scaffold | 28 Nov 2024 | WELLCOME SANGER INSTITUTE | 2,956,530,355 | 45.26 | secondary | mammals |
| 534 | GCA_964374135.1 | GCA_964374135.1_mGraGri1.hap1.1 | Grampus griseus | Risso's dolphin (hap1.1 2024) | 83653 | SAMEA111380541 | haploid | Chromosome | 29 Nov 2024 | WELLCOME SANGER INSTITUTE | 2,667,081,928 | 43.58 | primary | mammals |
| 535 | GCA_964374185.1 | GCA_964374185.1_mGraGri1.hap2.1 | Grampus griseus | Risso's dolphin (hap2.1 2024) | 83653 | SAMEA111380541 | haploid | Scaffold | 29 Nov 2024 | WELLCOME SANGER INSTITUTE | 2,403,961,738 | 43.57 | secondary | mammals |
| 536 | GCA_964374335.1 | GCA_964374335.1_fAstCal68.1 | Astatotilapia calliptera | eastern happy (primary hap 2024) | 8154 | SAMEA112818850 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 Dec 2024 | WELLCOME SANGER INSTITUTE | 933,429,770 | 32.72 | primary | fish |
| 537 | GCA_964417125.1 | GCA_964417125.1_bLarArg3.hap2.1 | Larus argentatus | herring gull (hap2 2024) | 35669 | SAMEA115168456 | haploid | Chromosome | 05 Dec 2024 | WELLCOME SANGER INSTITUTE | 1,256,866,793 | 27.78 | secondary | birds |
| 538 | GCA_964417175.1 | GCA_964417175.1_bLarArg3.hap1.1 | Larus argentatus | herring gull (hap1 2024) | 35669 | SAMEA115168456 | haploid | Chromosome | 05 Dec 2024 | WELLCOME SANGER INSTITUTE | 1,417,856,064 | 29.51 | primary | birds |
| 539 | GCA_964638095.1 | GCA_964638095.1_fPorCra3.hap1.1 | Poromitra crassiceps | crested bigscale (hap1.1 2025) | 88708 | SAMEA8748810 | haploid | Chromosome | 02 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,630,001,977 | 57.57 | primary | fish |
| 540 | GCA_964638665.1 | GCA_964638665.1_fPorCra3.hap2.1 | Poromitra crassiceps | crested bigscale (hap2.1 2025) | 88708 | SAMEA8748810 | haploid | Chromosome | 02 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,511,638,839 | 56.40 | secondary | fish |
| 541 | GCA_964656075.1 | GCA_964656075.1_mPipNat1.hap2.1 | Pipistrellus nathusii | Nathusius's pipistrelle (hap2.1 2025) | 59473 | SAMEA115534661 | haploid | Scaffold | 03 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,961,094,329 | 39.62 | secondary | mammals |
| 542 | GCA_964656225.1 | GCA_964656225.1_mPipNat1.hap1.1 | Pipistrellus nathusii | Nathusius's pipistrelle (hap1.1 2025) | 59473 | SAMEA115534661 | haploid | Chromosome | 02 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,916,223,105 | 37.99 | primary | mammals |
| 543 | GCA_964656455.1 | GCA_964656455.1_mHalGry1.hap1.1 | Halichoerus grypus | gray seal (hap1.1 2025) | 9711 | SAMEA115427674 | haploid | Chromosome | 02 Jan 2025 | WELLCOME SANGER INSTITUTE | 2,400,078,677 | 34.86 | primary | mammals |
| 544 | GCA_964656465.1 | GCA_964656465.1_mHalGry1.hap2.1 | Halichoerus grypus | gray seal (hap2.1 2025) | 9711 | SAMEA115427674 | haploid | Scaffold | 03 Jan 2025 | WELLCOME SANGER INSTITUTE | 2,387,143,391 | 35.00 | secondary | mammals |
| 545 | GCA_964662095.1 | GCA_964662095.1_mMusNiv2.hap2.1 | Mustela nivalis | least weasel (hap2.1 2025) | 36239 | SAMEA113398841 | haploid | Scaffold | 03 Jan 2025 | WELLCOME SANGER INSTITUTE | 2,835,054,152 | 42.56 | secondary | mammals |
| 546 | GCA_964662115.1 | GCA_964662115.1_mMusNiv2.hap1.1 | Mustela nivalis | least weasel (hap1.1 2025) | 36239 | SAMEA113398841 | haploid | Chromosome | 03 Jan 2025 | WELLCOME SANGER INSTITUTE | 3,437,873,602 | 49.65 | primary | mammals |
| 547 | GCA_965112155.1 | GCA_965112155.1_rPodLio1.hap1.1 | Podarcis liolepis | Columbretes wall lizard (hap1.1 2025) | 662736 | SAMEA114217798 | haploid | Chromosome | 23 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,574,020,868 | 40.01 | primary | reptiles |
| 548 | GCA_965113295.1 | GCA_965113295.1_fLeuLeu2.hap1.1 | Leuciscus leuciscus | common dace (hap1.1 2025) | 58325 | SAMEA11296544 | haploid | Chromosome | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,198,377,133 | 56.31 | primary | fish |
| 549 | GCA_965113305.1 | GCA_965113305.1_rPodVau1.hap2.1 | Podarcis vaucheri | lizards P.vaucheri (hap2.1 2025) | 140051 | SAMEA115336770 | haploid | Chromosome | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,510,738,089 | 40.40 | secondary | reptiles |
| 550 | GCA_965113315.1 | GCA_965113315.1_rPodVau1.hap1.1 | Podarcis vaucheri | lizards P.vaucheri (hap1.1 2025) | 140051 | SAMEA115336770 | haploid | Chromosome | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,614,928,384 | 41.38 | primary | reptiles |
| 551 | GCA_965113325.1 | GCA_965113325.1_fLeuLeu2.hap2.1 | Leuciscus leuciscus | common dace (hap2.1 2025) | 58325 | SAMEA11296544 | haploid | Chromosome | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 1,179,019,172 | 55.35 | secondary | fish |
| 552 | GCA_965115925.1 | GCA_965115925.1_mMyoEma1.hap1.1 | Myotis emarginatus | Geoffroy's bat (hap1.1 2025) | 109480 | SAMEA115534660 | haploid | Chromosome | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 2,109,797,427 | 39.36 | primary | mammals |
| 553 | GCA_965115945.1 | GCA_965115945.1_mMyoEma1.hap2.1 | Myotis emarginatus | Geoffroy's bat (hap2.1 2025) | 109480 | SAMEA115534660 | haploid | Scaffold | 24 Jan 2025 | WELLCOME SANGER INSTITUTE | 2,081,394,546 | 39.23 | secondary | mammals |
| 554 | GCA_965119305.1 | GCA_965119305.1_aPelLes1.hap1.1 | Pelophylax lessonae | pool frog (hap1 2025) | 45623 | SAMEA112468029 | haploid | Chromosome | 11 Feb 2025 | WELLCOME SANGER INSTITUTE | 5,811,246,175 | 60.24 | primary | amphibians |
| 555 | GCA_965119315.1 | GCA_965119315.1_aPelLes1.hap2.1 | Pelophylax lessonae | pool frog (hap2 2025) | 45623 | SAMEA112468029 | haploid | Scaffold | 05 Feb 2025 | WELLCOME SANGER INSTITUTE | 5,762,139,629 | 60.12 | secondary | amphibians |
| 556 | GCA_965140185.1 | GCA_965140185.1_bAthNoc1.hap2.1 | Athene noctua | little owl (hap2.1 2025) | 126797 | SAMEA114594456 | haploid | Scaffold | 13 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,302,383,638 | 22.54 | secondary | birds |
| 557 | GCA_965140235.1 | GCA_965140235.1_rCarCar1.hap1 | Caretta caretta | loggerhead turtle (hap1 2025) | 8467 | SAMN46282778 | haploid | Chromosome | 13 Feb 2025 | Vertebrate Genomes Project | 2,217,236,305 | 34.66 | primary | reptiles |
| 558 | GCA_965140245.1 | GCA_965140245.1_bAthNoc1.hap1.1 | Athene noctua | little owl (hap1.1 2025) | 126797 | SAMEA114594456 | haploid | Chromosome | 13 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,355,875,761 | 25.15 | primary | birds |
| 559 | GCA_965140255.1 | GCA_965140255.1_rLepOli2.hap2 | Lepidochelys olivacea | Pacific ridley (hap2 2025) | 27788 | SAMN46283035 | haploid | Chromosome | 13 Feb 2025 | Vertebrate Genomes Project | 2,208,046,144 | 34.74 | secondary | reptiles |
| 560 | GCA_965140265.1 | GCA_965140265.1_rLepKem1.hap2 | Lepidochelys kempii | Atlantic ridley (rLepKem1 hap2 2025) | 8472 | SAMN46282779 | haploid | Chromosome | 26 Mar 2025 | Vertebrate Genomes Project | 2,204,769,334 | 34.28 | secondary | reptiles |
| 561 | GCA_965140275.1 | GCA_965140275.1_rCarCar1.hap2 | Caretta caretta | loggerhead turtle (hap2 2025) | 8467 | SAMN46282778 | haploid | Chromosome | 13 Feb 2025 | Vertebrate Genomes Project | 2,206,382,585 | 34.41 | secondary | reptiles |
| 562 | GCA_965140285.1 | GCA_965140285.1_rLepKem1.hap1 | Lepidochelys kempii | Atlantic ridley (rLepKem1 hap1 2025) | 8472 | SAMN46282779 | haploid | Chromosome | 26 Mar 2025 | Vertebrate Genomes Project | 2,219,022,919 | 34.46 | primary | reptiles |
| 563 | GCA_965140295.1 | GCA_965140295.1_rLepOli2.hap1 | Lepidochelys olivacea | Pacific ridley (hap1 2025) | 27788 | SAMN46283035 | haploid | Chromosome | 13 Feb 2025 | Vertebrate Genomes Project | 2,206,585,630 | 34.74 | primary | reptiles |
| 564 | GCA_965140915.1 | GCA_965140915.1_bAytMar2.hap1.1 | Aythya marila | greater scaup (hap1 2025) | 189534 | SAMEA115433010 | haploid | Chromosome | 13 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,224,533,240 | 26.48 | primary | birds |
| 565 | GCA_965140925.1 | GCA_965140925.1_bAytMar2.hap2.1 | Aythya marila | greater scaup (hap2 2025) | 189534 | SAMEA115433010 | haploid | Scaffold | 13 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,053,096,367 | 22.77 | secondary | birds |
| 566 | GCA_965151615.1 | GCA_965151615.1_bCygCol1.1 | Cygnus columbianus | tundra swan (primary hap 2025) | 110926 | SAMEA112468031 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,293,538,149 | 28.81 | primary | birds |
| 567 | GCA_965152195.1 | GCA_965152195.1_rNatDep2.hap2 | Natator depressus | flatback sea turtle (hap2 2025) | 27790 | SAMN46282745 | haploid | Chromosome | 16 Feb 2025 | Vertebrate Genomes Project | 2,130,756,730 | 43.66 | secondary | reptiles |
| 568 | GCA_965152235.1 | GCA_965152235.1_rEreImb1.hap1 | Eretmochelys imbricata | hawksbill sea turtle (hap1 2025) | 27787 | SAMN46283036 | haploid | Chromosome | 10 Apr 2025 | Vertebrate Genomes Project | 2,218,003,986 | 33.65 | primary | reptiles |
| 569 | GCA_965152275.1 | GCA_965152275.1_rNatDep2.hap1 | Natator depressus | flatback sea turtle (hap1 2025) | 27790 | SAMN46282745 | haploid | Chromosome | 16 Feb 2025 | Vertebrate Genomes Project | 2,173,446,978 | 43.63 | primary | reptiles |
| 570 | GCA_965152285.1 | GCA_965152285.1_rEreImb1.hap2 | Eretmochelys imbricata | hawksbill sea turtle (hap2 2025) | 27787 | SAMN46283036 | haploid | Chromosome | 16 Feb 2025 | Vertebrate Genomes Project | 2,224,324,466 | 34.07 | secondary | reptiles |
| 571 | GCA_965153285.1 | GCA_965153285.1_rPodTil1.hap1.1 | Podarcis tiliguerta | Tyrrhenian wall lizard (hap1 2025) | 65485 | SAMEA114217799 | haploid | Chromosome | 26 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,462,327,121 | 37.08 | primary | reptiles |
| 572 | GCA_965153305.1 | GCA_965153305.1_rPodTil1.hap2.1 | Podarcis tiliguerta | Tyrrhenian wall lizard (hap2 2025) | 65485 | SAMEA114217799 | haploid | Chromosome | 26 Feb 2025 | WELLCOME SANGER INSTITUTE | 1,382,196,565 | 36.68 | secondary | reptiles |
| 573 | GCA_965178375.1 | GCA_965178375.1_rPodLio1.hap2.1 | Podarcis liolepis | Columbretes wall lizard (hap2.1 2025) | 662736 | SAMEA114217798 | haploid | Scaffold | 05 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,478,082,625 | 39.29 | secondary | reptiles |
| 574 | GCA_965178535.1 | GCA_965178535.1_bColMon1.hap2.1 | Coloeus monedula | jackdaw (hap2.1 2025) | 30423 | SAMEA115433023 | haploid | Chromosome | 04 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,109,102,816 | 24.68 | secondary | birds |
| 575 | GCA_965178545.1 | GCA_965178545.1_bColMon1.hap1.1 | Coloeus monedula | jackdaw (hap1.1 2025) | 30423 | SAMEA115433023 | haploid | Chromosome | 04 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,263,996,688 | 26.93 | primary | birds |
| 576 | GCA_965183785.1 | GCA_965183785.1_bPlaLeu2.hap2.1 | Platalea leucorodia | Eurasian spoonbill (hap2.1 2025) | 257867 | SAMEA112468120 | haploid | Scaffold | 05 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,190,439,839 | 22.31 | secondary | birds |
| 577 | GCA_965183815.1 | GCA_965183815.1_bPlaLeu2.hap1.1 | Platalea leucorodia | Eurasian spoonbill (hap1.1 2025) | 257867 | SAMEA112468120 | haploid | Chromosome | 04 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,345,843,103 | 14.04 | primary | birds |
| 578 | GCA_965194725.1 | GCA_965194725.1_mBalBor1.hap2.1 | Balaenoptera borealis | sei whale (hap2.1 2025) | 9768 | SAMEA114493134 | haploid | Scaffold | 05 Mar 2025 | WELLCOME SANGER INSTITUTE | 2,988,821,750 | 46.53 | secondary | mammals |
| 579 | GCA_965194765.1 | GCA_965194765.1_mBalPhy2.hap2.1 | Balaenoptera physalus | fin whale (hap2.1 2025) | 9770 | SAMEA114493136 | haploid | Scaffold | 05 Mar 2025 | WELLCOME SANGER INSTITUTE | 2,850,212,336 | 45.83 | secondary | mammals |
| 580 | GCA_965194805.1 | GCA_965194805.1_mBalBor1.hap1.1 | Balaenoptera borealis | sei whale (hap1.1 2025) | 9768 | SAMEA114493134 | haploid | Chromosome | 10 Mar 2025 | WELLCOME SANGER INSTITUTE | 3,234,573,494 | 50.48 | primary | mammals |
| 581 | GCA_965194825.1 | GCA_965194825.1_mBalPhy2.hap1.1 | Balaenoptera physalus | fin whale (hap1.1 2025) | 9770 | SAMEA114493136 | haploid | Chromosome | 10 Mar 2025 | WELLCOME SANGER INSTITUTE | 3,442,554,901 | 52.41 | primary | mammals |
| 582 | GCA_965202575.1 | GCA_965202575.1_ktThaDemo2.hap2.1 | Thalia democratica | tunicate T.democratica (hap2.1 2025) | 34761 | SAMEA111439782 | haploid | Scaffold | 14 Mar 2025 | WELLCOME SANGER INSTITUTE | 790,658,053 | 59.91 | secondary | otherChordates |
| 583 | GCA_965202585.1 | GCA_965202585.1_ktThaDemo2.hap1.1 | Thalia democratica | tunicate T.democratica (hap1.1 2025) | 34761 | SAMEA111439782 | haploid | Chromosome | 14 Mar 2025 | WELLCOME SANGER INSTITUTE | 801,813,394 | 60.02 | primary | otherChordates |
| 584 | GCA_965203405.1 | GCA_965203405.1_mPipPip2.hap1.1 | Pipistrellus pipistrellus | common pipistrelle (hap1.1 2025) | 59474 | SAMEA9921453 | haploid | Chromosome | 15 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,899,371,011 | 37.92 | secondary | mammals |
| 585 | GCA_965204225.1 | GCA_965204225.1_mPipPip2.hap2.1 | Pipistrellus pipistrellus | common pipistrelle (hap2.1 2025) | 59474 | SAMEA9921453 | haploid | Scaffold | 15 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,854,961,430 | 36.43 | secondary | mammals |
| 586 | GCA_965207765.1 | GCA_965207765.1_rZooViv2.hap1.1 | Zootoca vivipara | common lizard Z.vivipara (hap1.1 2025) | 8524 | SAMEA111528663 | haploid | Chromosome | 15 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,424,530,687 | 37.28 | secondary | reptiles |
| 587 | GCA_965208345.1 | GCA_965208345.1_rZooViv2.hap2.1 | Zootoca vivipara | common lizard Z.vivipara (hap2.1 2025) | 8524 | SAMEA111528663 | haploid | Chromosome | 15 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,423,701,498 | 37.19 | secondary | reptiles |
| 588 | GCA_965225695.1 | GCA_965225695.1_fPagPag1.hap2.1 | Pagrus pagrus | common seabream (hap2.1 2025) | 8173 | SAMEA110450108 | haploid | Scaffold | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 786,794,581 | 26.85 | secondary | fish |
| 589 | GCA_965226115.1 | GCA_965226115.1_fAulStu2.1 | Aulonocara stuartgranti | flavescent peacock cichlid (primary hap 2025) | 286572 | SAMEA112818851 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Mar 2025 | WELLCOME SANGER INSTITUTE | 945,383,024 | 33.28 | primary | fish |
| 590 | GCA_965226575.1 | GCA_965226575.1_fPagPag1.hap1.1 | Pagrus pagrus | common seabream (hap1.1 2025) | 8173 | SAMEA110450108 | haploid | Chromosome | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 825,699,107 | 29.37 | primary | fish |
| 591 | GCA_965231245.1 | GCA_965231245.1_bZosLat1.hap2.1 | Zosterops lateralis | silver-eye (hap2.1 2025) | 43581 | SAMEA112953925 | haploid | Chromosome | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,047,426,550 | 23.59 | secondary | birds |
| 592 | GCA_965231255.1 | GCA_965231255.1_bVanVan1.hap1.1 | Vanellus vanellus | northern lapwing (hap1.1 2025) | 100859 | SAMEA113398832 | haploid | Chromosome | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,476,623,026 | 25.35 | primary | birds |
| 593 | GCA_965231275.1 | GCA_965231275.1_bZosLat1.hap1.1 | Zosterops lateralis | silver-eye (hap1.1 2025) | 43581 | SAMEA112953925 | haploid | Chromosome | 28 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,143,512,649 | 22.40 | primary | birds |
| 594 | GCA_965231335.1 | GCA_965231335.1_bBraCan1.1 | Branta canadensis | Canada goose (primary hap 2025) | 8853 | SAMEA113398965 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Mar 2025 | WELLCOME SANGER INSTITUTE | 1,311,899,232 | 29.89 | primary | birds |
| 595 | GCF_000001405.40 | GCF_000001405.40_GRCh38.p14 | Homo sapiens | human (GRCh38.p14 2022) | 9606 | (n/a) | haploid-with-alt-loci | Chromosome | 03 Feb 2022 | Genome Reference Consortium | 3,298,430,636 | 50.25 | secondary | primates |
| 596 | GCF_003369695.1 | GCF_003369695.1_UOA_Brahman_1 | Bos indicus x Bos taurus | hybrid cattle (Angus x Brahman F1 Brahman haplotype 2018) | 30522 | SAMN08473802 | haploid | Chromosome | 30 Nov 2018 | University of Adelaide | 2,680,953,056 | 47.57 | primary | mammals |
| 597 | GCF_003957555.1 | GCF_003957555.1_bCalAnn1_v1.p | Calypte anna | Anna's hummingbird (BGI_N300 2019 refseq) | 9244 | SAMN02265252 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 May 2019 | Vertebrate Genomes Project | 1,059,687,259 | 11.09 | primary | birds |
| 598 | GCF_004027225.2 | GCF_004027225.2_bStrHab1.2.pri | Strigops habroptila | kakapo (v2 Jane 2020 refseq) | 2489341 | SAMN09948751 | haploid | Chromosome | 04 Mar 2020 | Vertebrate Genomes Project | 1,148,597,545 | 10.18 | primary | birds |
| 599 | GCF_004115215.2 | GCF_004115215.2_mOrnAna1.pri.v4 | Ornithorhynchus anatinus | platypus (Pmale09 v4 2020) | 9258 | SAMN08537700 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Nov 2020 | Vertebrate Genomes Project | 1,859,281,927 | 50.98 | primary | mammals |
| 600 | GCF_004115265.2 | GCF_004115265.2_mRhiFer1_v1.p | Rhinolophus ferrumequinum | greater horseshoe bat (v2 MPI-CBG 2019) | 59479 | SAMN09948510 | haploid | Chromosome | 16 May 2019 | Vertebrate Genomes Project | 2,075,768,562 | 34.43 | primary | mammals |
| 601 | GCF_004126475.2 | GCF_004126475.2_mPhyDis1.pri.v3 | Phyllostomus discolor | pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 primary hap 2020) | 89673 | SAMN09948786 | haploid (principal pseudohaplotype of diploid) | Chromosome | 12 May 2020 | Vertebrate Genomes Project | 2,108,832,841 | 30.92 | primary | mammals |
| 602 | GCF_007364275.1 | GCF_007364275.1_fArcCen1 | Archocentrus centrarchus | flier cichlid (MPI-CPG 2019 refseq) | 63155 | SAMN09948522 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 Aug 2019 | Vertebrate Genomes Project | 932,930,362 | 37.61 | primary | fish |
| 603 | GCF_007399415.2 | GCF_007399415.2_rGopEvg1_v1.p | Gopherus evgoodei | Goodes thornscrub tortoise (Sinaloan 2019) | 1825980 | SAMN03496275 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 Jul 2019 | Vertebrate Genomes Project | 2,298,564,209 | 44.65 | primary | reptiles |
| 604 | GCF_007474595.2 | GCF_007474595.2_mLynCan4.pri.v2 | Lynx canadensis | Canada lynx (LIC74 v2 primary hap 2020) | 61383 | SAMN09948483 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Jul 2020 | Vertebrate Genomes Project | 2,407,810,255 | 43.72 | primary | mammals |
| 605 | GCF_008692025.1 | GCF_008692025.1_mPhoSin1.pri | Phocoena sinus | vaquita (mPhoSin1 2019) | 42100 | SAMN12325353 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Sep 2019 | Vertebrate Genomes Project | 2,371,524,154 | 44.14 | primary | mammals |
| 606 | GCF_008822105.2 | GCF_008822105.2_bTaeGut2.pat.W.v2 | Taeniopygia guttata | zebra finch (Blue55 paternal W 2020) | 59729 | SAMN09946140 | haploid | Chromosome | 12 Feb 2020 | Vertebrate Genomes Project | 1,068,988,106 | 10.50 | secondary | birds |
| 607 | GCF_009650955.1 | GCF_009650955.1_bCorMon1.pri | Corvus moneduloides | New Caledonian crow (primary hap 2019) | 1196302 | SAMN12368441 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Nov 2019 | Vertebrate Genomes Project | 1,112,734,094 | 10.34 | primary | birds |
| 608 | GCF_009762305.2 | GCF_009762305.2_mZalCal1.pri.v2 | Zalophus californianus | California sea lion (v2 primary hap 2020) | 9704 | SAMN12368149 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Jul 2020 | Vertebrate Genomes Project | 2,409,685,272 | 43.36 | primary | mammals |
| 609 | GCF_009762535.1 | GCF_009762535.1_fNotCel1.pri | Notolabrus celidotus | New Zealand spotty (primary hap refseq) | 1203425 | SAMN12623201 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Dec 2019 | Vertebrate Genomes Project | 846,744,125 | 35.73 | primary | fish |
| 610 | GCF_009764475.1 | GCF_009764475.1_sPriPec2.1.pri | Pristis pectinata | smalltooth sawfish (v2.1 primary hap 2019 refseq) | 685728 | SAMN12629505 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Dec 2019 | Vertebrate Genomes Project | 2,267,840,987 | 54.48 | primary | sharks |
| 611 | GCF_009764565.3 | GCF_009764565.3_rDerCor1.pri.v4 | Dermochelys coriacea | leatherback sea turtle (v4 primary hap 2021 refseq) | 27794 | SAMN12629498 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 Aug 2021 | G10K | 2,164,762,090 | 43.87 | primary | reptiles |
| 612 | GCF_009769535.1 | GCF_009769535.1_rThaEle1.pri | Thamnophis elegans | western terrestrial garter snake (primary hap 2019) | 35005 | SAMN12629499 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Dec 2019 | Vertebrate Genomes Project | 1,672,190,305 | 47.87 | primary | reptiles |
| 613 | GCF_009769545.1 | GCF_009769545.1_fCycLum1.pri | Cyclopterus lumpus | lumpfish (v1 primary hap 2019 refseq) | 8103 | SAMN12629502 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Dec 2019 | Vertebrate Genomes Project | 572,885,595 | 22.40 | primary | fish |
| 614 | GCF_009769625.2 | GCF_009769625.2_bCygOlo1.pri.v2 | Cygnus olor | mute swan (v2 primary hap 2021) | 8869 | SAMN12621369 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Mar 2021 | Vertebrate Genomes Project | 1,134,186,642 | 9.34 | primary | birds |
| 615 | GCF_009819535.1 | GCF_009819535.1_rLacAgi1.pri | Lacerta agilis | sand lizard (primary hap 2019) | 80427 | SAMN12629509 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,391,404,169 | 40.49 | primary | reptiles |
| 616 | GCF_009819655.1 | GCF_009819655.1_bSylAtr1.pri | Sylvia atricapilla | blackcap (primary hap 2019 refseq) | 48155 | SAMN12369542 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,066,804,524 | 19.80 | primary | birds |
| 617 | GCF_009819705.1 | GCF_009819705.1_fHipHip1.pri | Hippoglossus hippoglossus | Atlantic halibut (2019 refseq) | 8267 | SAMN12629501 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 596,792,615 | 21.93 | primary | fish |
| 618 | GCF_009819795.1 | GCF_009819795.1_bAytFul2.pri | Aythya fuligula | tufted duck (2019) | 219594 | SAMN12621346 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Dec 2019 | Vertebrate Genomes Project | 1,127,004,725 | 10.97 | primary | birds |
| 619 | GCF_009819885.2 | GCF_009819885.2_bCatUst1.pri.v2 | Catharus ustulatus | Swainson's thrush (v2 primary hap 2020) | 91951 | SAMN12618602 | haploid (principal pseudohaplotype of diploid) | Chromosome | 22 Dec 2020 | Vertebrate Genomes Project | 1,131,616,530 | 12.18 | primary | birds |
| 620 | GCF_009829125.3 | GCF_009829125.3_fPerMag1.2.pri | Periophthalmus magnuspinnatus | Korean giant-fin mudskipper (v1.2 primary hap 2023) | 409849 | SAMN12629500 | haploid (principal pseudohaplotype of diploid) | Chromosome | 21 Mar 2023 | Vertebrate Genomes Project | 752,605,561 | 43.07 | primary | fish |
| 621 | GCF_009829145.1 | GCF_009829145.1_bChiLan1.pri | Chiroxiphia lanceolata | lance-tailed manakin (2020) | 296741 | SAMN12620979 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Jan 2020 | Vertebrate Genomes Project | 1,089,631,598 | 9.68 | primary | birds |
| 622 | GCF_009829155.1 | GCF_009829155.1_mMusErm1.Pri | Mustela erminea | ermine (2020) | 36723 | SAMN12611999 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Jan 2020 | Vertebrate Genomes Project | 2,445,217,270 | 41.13 | primary | mammals |
| 623 | GCF_009873245.2 | GCF_009873245.2_mBalMus1.pri.v3 | Balaenoptera musculus | blue whale (JJ_BM4_2016_0621 v3 primary hap 2020) | 9771 | SAMN12287136 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Oct 2020 | G10K | 2,374,868,943 | 43.76 | primary | mammals |
| 624 | GCF_010909765.2 | GCF_010909765.2_sAmbRad1.1.pri | Amblyraja radiata | thorny skate (v1.1 primary hap CabotCenter1 2020) | 386614 | SAMN09948523 | haploid (principal pseudohaplotype of diploid) | Chromosome | 21 Feb 2020 | Vertebrate Genomes Project | 2,558,784,953 | 60.99 | primary | sharks |
| 625 | GCF_010993605.1 | GCF_010993605.1_kPetMar1.pri | Petromyzon marinus | sea lamprey (primary hap 2020) | 7757 | SAMN12629506 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Feb 2020 | Vertebrate Genomes Project | 1,089,050,413 | 55.78 | secondary | otherChordates |
| 626 | GCF_011004845.1 | GCF_011004845.1_fEsoLuc1.pri | Esox lucius | northern pike (primary hap 2020 refseq) | 8010 | SAMN12623624 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Mar 2020 | Vertebrate Genomes Project | 918,748,614 | 42.12 | primary | fish |
| 627 | GCF_011100635.1 | GCF_011100635.1_mTriVul1.pri | Trichosurus vulpecula | common brushtail (refseq 2020) | 9337 | SAMN12629507 | haploid (principal pseudohaplotype of diploid) | Chromosome | 10 Mar 2020 | Vertebrate Genomes Project | 3,359,347,707 | 53.13 | primary | mammals |
| 628 | GCF_011100685.1 | GCF_011100685.1_UU_Cfam_GSD_1.0 | Canis lupus familiaris | dog (German shepard Mischka 2020) | 9615 | SAMN13230619 | haploid | Chromosome | 10 Mar 2020 | Uppsala University | 2,481,983,352 | 43.95 | primary | mammals |
| 629 | GCF_011762595.1 | GCF_011762595.1_mTurTru1.mat.Y | Tursiops truncatus | common bottlenose dolphin (maternal Y refseq 2020) | 9739 | SAMN12326775 | haploid | Chromosome | 27 Mar 2020 | Vertebrate Genomes Project | 2,378,522,213 | 46.09 | primary | mammals |
| 630 | GCF_012275295.1 | GCF_012275295.1_bMelUnd1.mat.Z | Melopsittacus undulatus | budgerigar (maternal Z 2020 refseq) | 13146 | SAMN12623090 | haploid | Chromosome | 13 Apr 2020 | G10K | 1,171,617,451 | 13.67 | primary | birds |
| 631 | GCF_013347855.1 | GCF_013347855.1_fAngAng1.pri | Anguilla anguilla | European eel (primary hap 2020 refseq) | 7936 | SAMN12623627 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jun 2020 | Vertebrate Genomes Project | 979,045,926 | 25.96 | primary | fish |
| 632 | GCF_013368585.1 | GCF_013368585.1_fMegCyp1.pri | Megalops cyprinoides | Indo-Pacific tarpon (2020) | 118141 | SAMN12623619 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Jun 2020 | Vertebrate Genomes Project | 959,258,046 | 17.62 | primary | fish |
| 633 | GCF_013368605.1 | GCF_013368605.1_bNycGra1.pri | Nyctibius grandis | great potoo (primary hap 2020 refseq) | 48427 | SAMN12622411 | haploid (principal pseudohaplotype of diploid) | Chromosome | 23 Jun 2020 | Vertebrate Genomes Project | 1,256,393,467 | 23.97 | primary | birds |
| 634 | GCF_014108235.1 | GCF_014108235.1_mMyoMyo1.p | Myotis myotis | greater mouse-eared bat (2020 Bat1K) | 51298 | SAMN14734277 | haploid | Scaffold | 07 Aug 2020 | Bat1K | 2,002,797,769 | 35.59 | primary | mammals |
| 635 | GCF_014108245.1 | GCF_014108245.1_mPipKuh1.p | Pipistrellus kuhlii | Kuhl's pipistrelle (2020) | 59472 | SAMN14734388 | haploid | Scaffold | 07 Aug 2020 | Bat1K | 1,775,688,541 | 32.54 | primary | mammals |
| 636 | GCF_014108415.1 | GCF_014108415.1_mMolMol1.p | Molossus molossus | Pallas's mastiff bat | 27622 | SAMN14734448 | haploid | Scaffold | 07 Aug 2020 | Bat1K | 2,315,568,481 | 36.33 | primary | mammals |
| 637 | GCF_014176215.1 | GCF_014176215.1_mRouAeg1.p | Rousettus aegyptiacus | Egyptian rousette (v1 2020 refseq) | 9407 | SAMN14734550 | haploid | Scaffold | 07 Aug 2020 | Bat1K | 1,893,602,072 | 32.62 | primary | mammals |
| 638 | GCF_014839835.1 | GCF_014839835.1_bDryPub1.pri | Dryobates pubescens | downy woodpecker (primary hap 2020) | 118200 | SAMN12629497 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Oct 2020 | Vertebrate Genomes Project | 1,187,939,694 | 32.06 | primary | birds |
| 639 | GCF_015220075.1 | GCF_015220075.1_bFalRus1.pri | Falco rusticolus | gyrfalcon (primary hap 2020) | 120794 | SAMN12629496 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2020 | Vertebrate Genomes Project | 1,195,847,496 | 7.15 | primary | birds |
| 640 | GCF_015220235.1 | GCF_015220235.1_mChoDid1.pri | Choloepus didactylus | southern two-toed sloth (mChoDid1 primary hap 2020) | 27675 | SAMN12612024 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2020 | Vertebrate Genomes Project | 3,214,702,648 | 45.70 | primary | mammals |
| 641 | GCF_015220715.1 | GCF_015220715.1_fPygNat1.pri | Pygocentrus nattereri | red-bellied piranha (primary hap 2020) | 42514 | SAMN12623623 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2020 | Vertebrate Genomes Project | 1,222,050,449 | 47.79 | primary | fish |
| 642 | GCF_015220745.1 | GCF_015220745.1_fSebUmb1.pri | Sebastes umbrosus | honeycomb rockfish (primary hap 2020) | 72105 | SAMN12629503 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2020 | Vertebrate Genomes Project | 800,904,020 | 39.57 | primary | fish |
| 643 | GCF_015220805.1 | GCF_015220805.1_bPogPus1.pri | Pogoniulus pusillus | red-fronted tinkerbird (primary hap 2020 refseq) | 488313 | SAMN15098508 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2020 | Vertebrate Genomes Project | 1,272,338,968 | 35.91 | primary | birds |
| 644 | GCF_015227675.2 | GCF_015227675.2_mRatBN7.2 | Rattus norvegicus | Norway rat BN7.2 | 10116 | SAMN16261960 | haploid (principal pseudohaplotype of diploid) | Chromosome | 10 Nov 2020 | Wellcome Sanger Institute | 2,647,915,728 | 45.26 | primary | mammals |
| 645 | GCF_015227805.1 | GCF_015227805.1_bHirRus1.pri.v2 | Hirundo rustica | barn swallow (v2 primary hap 2021 refseq) | 43150 | SAMN14675488 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Mar 2021 | Vertebrate Genomes Project | 1,105,955,550 | 12.93 | primary | birds |
| 646 | GCF_015237465.2 | GCF_015237465.2_rCheMyd1.pri.v2 | Chelonia mydas | green sea turtle (v2 primary hap 2021) | 8469 | SAMN12612360 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Jul 2021 | Vertebrate Genomes Project | 2,134,375,114 | 42.38 | primary | reptiles |
| 647 | GCF_015476345.1 | GCF_015476345.1_ZJU1.0 | Anas platyrhynchos | mallard (Pekin duck Z2 2020 Zhejiang U) | 8839 | SAMN15588841 | haploid | Chromosome | 23 Nov 2020 | Zhejiang University | 1,188,533,289 | 13.99 | secondary | birds |
| 648 | GCF_015852505.1 | GCF_015852505.1_mTacAcu1.pri | Tachyglossus aculeatus | Australian echidna (mTacAcu1 primary hap 2020) | 9261 | SAMN12634963 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Dec 2020 | Vertebrate Genomes Project | 2,213,004,214 | 59.74 | primary | mammals |
| 649 | GCF_016699485.2 | GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b | Gallus gallus | chicken white leghorn layer X broiler (v2 broiler haplotype 2021 2021) | 9031 | SAMN15960293 | haploid | Chromosome | 19 Jan 2021 | Vertebrate Genomes Project | 1,053,332,251 | 13.94 | secondary | birds |
| 650 | GCF_016700215.2 | GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w | Gallus gallus | white leghorn X broiler chicken (v2 leghorn haplotype 2021) | 9031 | SAMN15960293 | alternate-pseudohaplotype | Chromosome | 01 Oct 2021 | Vertebrate Genomes Project | 1,050,511,239 | 13.67 | primary | birds |
| 651 | GCF_017639515.1 | GCF_017639515.1_sCarCar2.pri | Carcharodon carcharias | great white shark (primary hap 2021) | 13397 | SAMN12629504 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 4,286,311,191 | 60.33 | primary | sharks |
| 652 | GCF_017639655.2 | GCF_017639655.2_bFalNau1.pat | Falco naumanni | lesser kestrel (v2 2021) | 148594 | SAMN16870685 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 1,215,719,661 | 8.36 | primary | birds |
| 653 | GCF_017639745.1 | GCF_017639745.1_fMelBoe1.pri | Melanotaenia boesemani | Boeseman's rainbowfish (primary hap 2021) | 1250792 | SAMN12623618 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Mar 2021 | Vertebrate Genomes Project | 865,592,457 | 35.21 | primary | fish |
| 654 | GCF_017976325.1 | GCF_017976325.1_fCheRos1.pri | Chelmon rostratus | copperband butterflyfish (primary hap 2021) | 109905 | SAMN12623620 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Apr 2021 | Vertebrate Genomes Project | 644,208,431 | 21.56 | primary | fish |
| 655 | GCF_017976375.1 | GCF_017976375.1_bCucCan1.pri | Cuculus canorus | common cuckoo (bCucCan1 primary hap 2021 refseq) | 55661 | SAMN12629508 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Apr 2021 | Vertebrate Genomes Project | 1,180,136,575 | 21.81 | primary | birds |
| 656 | GCF_017976425.1 | GCF_017976425.1_fToxJac2.pri | Toxotes jaculatrix | banded archerfish (primary hap 2021 refseq) | 941984 | SAMN18445299 | haploid (principal pseudohaplotype of diploid) | Chromosome | 15 Apr 2021 | Vertebrate Genomes Project | 621,503,431 | 24.27 | primary | fish |
| 657 | GCF_018492685.1 | GCF_018492685.1_fAloSap1.pri | Alosa sapidissima | American shad (primary hap 2021) | 34773 | SAMN18857608 | haploid (principal pseudohaplotype of diploid) | Chromosome | 25 May 2021 | Vertebrate Genomes Project | 903,581,644 | 43.55 | primary | fish |
| 658 | GCF_019393635.1 | GCF_019393635.1_mDroGli1.pri | Dromiciops gliroides | monito del monte (primary hap 2021 refseq) | 33562 | SAMN18857598 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Aug 2021 | Vertebrate Genomes Project | 3,303,199,800 | 52.19 | primary | mammals |
| 659 | GCF_020382885.2 | GCF_020382885.2_fScaArg1.pri | Scatophagus argus | butterfish (primary hap 2021) | 75038 | SAMN12623616 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Oct 2021 | G10K | 570,802,272 | 16.69 | primary | fish |
| 660 | GCF_020740605.2 | GCF_020740605.2_mLemCat1.pri | Lemur catta | ring-tailed lemur (primary hap 2021) | 9447 | SAMN12621102 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 Nov 2021 | Vertebrate Genomes Project | 2,245,601,549 | 37.86 | primary | primates |
| 661 | GCF_020740685.1 | GCF_020740685.1_mJacJac1.mat.Y.cur | Jaculus jaculus | lesser Egyptian jerboa (2021) | 51337 | SAMN20391724 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 Nov 2021 | Vertebrate Genomes Project | 2,863,865,261 | 46.85 | primary | mammals |
| 662 | GCF_020740725.1 | GCF_020740725.1_bCorHaw1.pri.cur | Corvus hawaiiensis | Hawaiian crow (primary hap 2021 refseq) | 134902 | SAMN22550278 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 Nov 2021 | Vertebrate Genomes Project | 1,151,611,379 | 15.50 | primary | birds |
| 663 | GCF_020740795.1 | GCF_020740795.1_bApuApu2.pri.cur | Apus apus | common swift (primary hap 2021 refseq) | 8895 | SAMN22785356 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 Nov 2021 | Vertebrate Genomes Project | 1,100,378,261 | 11.14 | primary | birds |
| 664 | GCF_020745735.1 | GCF_020745735.1_sHemOce1.pat.X.cur. | Hemiscyllium ocellatum | epaulette shark (primary hap 2021 refseq) | 170820 | SAMN22550098 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2021 | Vertebrate Genomes Project | 3,983,466,396 | 62.70 | primary | sharks |
| 665 | GCF_020745825.1 | GCF_020745825.1_Agelaius_phoeniceus_1.1 | Agelaius phoeniceus | red-winged blackbird (BioBank_ID:100140 2023) | 39638 | SAMN19590559 | haploid | Chromosome | 15 Mar 2023 | Brood Parasitic Bird Genomes Consortium | 1,188,547,179 | 25.46 | primary | birds |
| 666 | GCF_020826845.1 | GCF_020826845.1_mDicBic1.mat.cur | Diceros bicornis minor | black rhinoceros (primary hap 2021 refseq) | 77932 | SAMN22047685 | haploid (principal pseudohaplotype of diploid) | Chromosome | 10 Nov 2021 | Vertebrate Genomes Project | 3,005,535,620 | 45.55 | primary | mammals |
| 667 | GCF_021462225.1 | GCF_021462225.1_DD_fGirMul_XY1 | Girardinichthys multiradiatus | dark-edged splitfin (DD_20200921_A 2022 refseq) | 208333 | SAMN22242658 | haploid | Chromosome | 24 Feb 2022 | Max Planck Institute of Molecular Cell Biology and Genetics | 1,150,004,004 | 50.12 | primary | fish |
| 668 | GCF_023053635.1 | GCF_023053635.1_rElgMul1.1.pri | Elgaria multicarinata webbii | San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 refseq) | 159646 | SAMN25872353 | haploid (principal pseudohaplotype of diploid) | Chromosome | 04 Jan 2024 | UCLA | 1,790,500,004 | 40.44 | primary | reptiles |
| 669 | GCF_023343835.1 | GCF_023343835.1_bLagMut1_primary | Lagopus muta | rock ptarmigan (primary hap 2022 refseq) | 64668 | SAMN25144835 | haploid (principal pseudohaplotype of diploid) | Chromosome | 12 May 2022 | Vertebrate Genomes Project | 1,026,771,810 | 13.09 | primary | birds |
| 670 | GCF_023375975.1 | GCF_023375975.1_AstMex3_surface | Astyanax mexicanus | Mexican tetra (ESR-SI-001 2022) | 7994 | SAMN25965548 | haploid | Chromosome | 19 May 2022 | University of Missouri | 1,373,169,186 | 51.65 | primary | fish |
| 671 | GCF_023634085.1 | GCF_023634085.1_bFalChe1.pri | Falco cherrug | Saker falcon (primary hap 2022 refseq) | 345164 | SAMN28688204 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Jun 2022 | Vertebrate Genomes Project | 1,309,385,023 | 14.22 | primary | birds |
| 672 | GCF_023634155.1 | GCF_023634155.1_bFalPer1.pri | Falco peregrinus | peregrine falcon (bFalPer1 primary hap 2022 refseq) | 8954 | SAMN28688290 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Jun 2022 | Vertebrate Genomes Project | 1,311,598,859 | 15.18 | primary | birds |
| 673 | GCF_023638135.1 | GCF_023638135.1_bFalBia1.pri | Falco biarmicus | lanner falcon (bFalBia1 primary hap 2022 refseq) | 345155 | SAMN28688289 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Jun 2022 | Vertebrate Genomes Project | 1,285,492,283 | 14.01 | primary | birds |
| 674 | GCF_024139225.1 | GCF_024139225.1_mSunEtr1.pri.cur | Suncus etruscus | white-toothed pygmy shrew (mSunEtr1 primary hap 2022) | 109475 | SAMN28420931 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Jul 2022 | Vertebrate Genomes Project | 2,471,666,657 | 46.06 | primary | mammals |
| 675 | GCF_024166365.1 | GCF_024166365.1_mEleMax1_primary_haplotype | Elephas maximus indicus | Asiatic elephant (mEleMax1 primary hap 2022) | 99487 | SAMN29174328 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Jul 2022 | Vertebrate Genomes Project | 3,401,247,148 | 51.18 | primary | mammals |
| 676 | GCF_025201925.1 | GCF_025201925.1_rGopFla2.mat.asm | Gopherus flavomarginatus | Mexican gopher tortoise (WGS:JAMKFC01 2022) | 286002 | SAMN24199108 | haploid (maternal haplotype of diploid) | Chromosome | 15 Sep 2022 | Vertebrate Genomes Project | 2,460,542,086 | 45.83 | primary | reptiles |
| 677 | GCF_025265405.1 | GCF_025265405.1_mMesDen1_primary_haplotype | Mesoplodon densirostris | Blainville's beaked whale (primary hap 2022 refseq) | 48708 | SAMN29828597 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Sep 2022 | Vertebrate Genomes Project | 2,683,391,478 | 43.15 | primary | mammals |
| 678 | GCF_026419915.1 | GCF_026419915.1_bHarHar1_primary_haplotype | Harpia harpyja | Harpy eagle (primary hap 2022 refseq) | 202280 | SAMN31530492 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Nov 2022 | Vertebrate Genomes Project | 1,351,447,071 | 16.24 | primary | birds |
| 679 | GCF_026419965.1 | GCF_026419965.1_mKogBre1_haplotype_1 | Kogia breviceps | pygmy sperm whale (haplotype 1 2022 refseq) | 27615 | SAMN31719513 | haploid | Chromosome | 27 Nov 2022 | Vertebrate Genomes Project | 2,555,855,246 | 40.78 | primary | mammals |
| 680 | GCF_026979565.1 | GCF_026979565.1_bVidCha1_merged_haplotype | Vidua chalybeata | village indigobird (merged hap OUT-0048 2022 refseq) | 81927 | SAMN12254000 | haploid | Chromosome | 21 Dec 2022 | Vertebrate Genomes Project | 1,080,440,577 | 20.96 | primary | birds |
| 681 | GCF_027172205.1 | GCF_027172205.1_rPodRaf1.pri | Podarcis raffonei | Aeolian wall lizard (La Canna islet primary hap 2022 refseq) | 65483 | SAMN28455423 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Dec 2022 | Vertebrate Genomes Project | 1,513,131,503 | 44.63 | primary | reptiles |
| 682 | GCF_027358585.1 | GCF_027358585.1_fPanHyp1.pri | Pangasianodon hypophthalmus | striped catfish (primary hap 2022 refseq) | 310915 | SAMN32348883 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 764,974,446 | 37.93 | primary | fish |
| 683 | GCF_027358695.1 | GCF_027358695.1_aSpeBom1.2.pri | Spea bombifrons | plains spadefoot toad (primary hap 2022) | 233779 | SAMN28408467 | haploid (principal pseudohaplotype of diploid) | Chromosome | 27 Dec 2022 | Vertebrate Genomes Project | 987,655,159 | 39.22 | primary | amphibians |
| 684 | GCF_027406575.1 | GCF_027406575.1_mNycCou1.pri | Nycticebus coucang | slow loris (primary hap 2022) | 9470 | SAMN28408555 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 2,917,154,053 | 43.15 | primary | primates |
| 685 | GCF_027409185.1 | GCF_027409185.1_mCynVol1.pri | Cynocephalus volans | Philippine flying lemur (primary hap 2022 refseq) | 110931 | SAMN32206947 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 2,814,418,120 | 39.52 | primary | mammals |
| 686 | GCF_027409825.1 | GCF_027409825.1_fScoJap1.pri | Scomber japonicus | chub mackerel (primary hap 2022 refseq) | 13676 | SAMN32224830 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Dec 2022 | Vertebrate Genomes Project | 828,681,152 | 32.04 | primary | fish |
| 687 | GCF_027477595.1 | GCF_027477595.1_bHaeMex1.pri | Haemorhous mexicanus | house finch (primary hap 2022 refseq) | 30427 | SAMN28453576 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Dec 2022 | Vertebrate Genomes Project | 1,148,233,018 | 15.56 | primary | birds |
| 688 | GCF_027574615.1 | GCF_027574615.1_DD_ASM_mEF_20220401 | Eptesicus fuscus | big brown bat (TK198812 2023) | 29078 | SAMN30608903 | haploid | Chromosome | 09 Jan 2023 | Bat1K | 2,008,057,866 | 37.06 | primary | mammals |
| 689 | GCF_027579445.1 | GCF_027579445.1_bAmmNel1.pri | Ammospiza nelsoni | Nelson's sparrow (bAmmNel1 primary hap 2023 refseq) | 2857394 | SAMN28421656 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 1,185,463,352 | 19.51 | primary | birds |
| 690 | GCF_027579695.1 | GCF_027579695.1_fNeoGra1.pri | Neoarius graeffei | lesser salmon catfish (primary hap 2023 refseq) | 443677 | SAMN28453209 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 2,341,916,362 | 71.56 | primary | fish |
| 691 | GCF_027579735.1 | GCF_027579735.1_aBomBom1.pri | Bombina bombina | fire-bellied toad (primary hap 2023 refseq) | 8345 | SAMN32378350 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 10,019,663,791 | 69.42 | primary | amphibians |
| 692 | GCF_027595985.1 | GCF_027595985.1_mSorAra2.pri | Sorex araneus | European shrew (primary hap 2023) | 42254 | SAMN32477717 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Jan 2023 | Vertebrate Genomes Project | 2,405,993,548 | 40.85 | primary | mammals |
| 693 | GCF_027789765.1 | GCF_027789765.1_aDenEbr1.pat | Dendropsophus ebraccatus | hourglass treefrog (paternal 2023 refseq) | 150705 | SAMN32145295 | haploid (paternal haplotype of diploid) | Chromosome | 13 Jan 2023 | Vertebrate Genomes Project | 2,214,937,069 | 51.44 | primary | amphibians |
| 694 | GCF_027887145.1 | GCF_027887145.1_bAmmCau1.pri | Ammospiza caudacuta | saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq) | 2857398 | SAMN28421630 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 1,241,209,685 | 22.91 | primary | birds |
| 695 | GCF_027887155.1 | GCF_027887155.1_rMalTer1.hap1 | Malaclemys terrapin pileata | diamondback terrapin (hap1 2023 refseq) | 2991368 | SAMN31394215 | haploid | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 2,211,221,380 | 46.30 | primary | reptiles |
| 696 | GCF_027887165.1 | GCF_027887165.1_mMonDom1.pri | Monodelphis domestica | gray short-tailed opossum (mMonDom1 primary hap 2023 refseq) | 13616 | SAMN31801966 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Jan 2023 | Vertebrate Genomes Project | 3,586,166,573 | 53.23 | primary | mammals |
| 697 | GCF_028017835.1 | GCF_028017835.1_rEmyOrb1.hap1 | Emys orbicularis | European pond turtle (hap1 2023 refseq) | 82168 | SAMN31805221 | haploid (haplotype 1) | Chromosome | 30 Jan 2023 | Vertebrate Genomes Project | 2,309,740,635 | 45.64 | primary | reptiles |
| 698 | GCF_028018385.1 | GCF_028018385.1_mNeoNeb1.pri | Neofelis nebulosa | clouded leopard (mNeoNeb1 primary hap 2023 refseq) | 61452 | SAMN31801981 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 2,468,345,093 | 34.87 | primary | mammals |
| 699 | GCF_028018845.1 | GCF_028018845.1_bMelGeo1.pri | Melospiza georgiana | swamp sparrow (bMelGeo1 primary hap 2023 refseq) | 44398 | SAMN22787412 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 1,162,015,399 | 18.35 | primary | birds |
| 700 | GCF_028021215.1 | GCF_028021215.1_mEscRob2.pri | Eschrichtius robustus | grey whale (primary hap 2023 refseq) | 9764 | SAMN32629250 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2023 | Vertebrate Genomes Project | 2,982,418,581 | 46.11 | primary | mammals |
| 701 | GCF_028023285.1 | GCF_028023285.1_mBalRic1.hap2 | Balaenoptera ricei | Rice's whale (hap2 2023 refseq) | 2746895 | SAMN32629060 | haploid | Chromosome | 30 Jan 2023 | Vertebrate Genomes Project | 2,678,442,663 | 41.79 | primary | mammals |
| 702 | GCF_028372415.1 | GCF_028372415.1_mMacEug1.pri_v2 | Notamacropus eugenii | tammar wallaby (v2 primary hap 2023 refseq) | 9315 | SAMN28408687 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Feb 2023 | Vertebrate Genomes Project | 3,447,464,908 | 39.54 | primary | mammals |
| 703 | GCF_028389875.1 | GCF_028389875.1_bPtePen1.pri | Rhea pennata | lesser rhea (bPtePen1 primary hap 2023 refseq) | 8795 | SAMN32606345 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Feb 2023 | Vertebrate Genomes Project | 1,269,016,774 | 22.80 | primary | birds |
| 704 | GCF_028390025.1 | GCF_028390025.1_aPseCor3.hap2 | Pseudophryne corroboree | corroboree frog (hap2 2023 refseq) | 495146 | SAMN32631236 | haploid | Chromosome | 06 Feb 2023 | Vertebrate Genomes Project | 8,872,758,793 | 74.73 | primary | amphibians |
| 705 | GCF_028500815.1 | GCF_028500815.1_bRisTri1.patW.cur.20221130 | Rissa tridactyla | black-legged kittiwake (bRisTri1 2023 refseq) | 75485 | SAMN32104255 | haploid (paternal haplotype of diploid) | Chromosome | 09 Feb 2023 | Vertebrate Genomes Project | 1,353,621,101 | 18.09 | primary | birds |
| 706 | GCF_028564815.1 | GCF_028564815.1_mEubGla1.1.hap2._XY | Eubalaena glacialis | North Atlantic right whale (hap2 + XY 2023 refseq) | 27606 | SAMN32746534 | haploid | Chromosome | 09 Feb 2023 | Vertebrate Genomes Project | 2,843,691,573 | 44.66 | primary | mammals |
| 707 | GCF_028583425.1 | GCF_028583425.1_MPM_Emac_v1.0 | Eublepharis macularius | leopard gecko (TG4126 2023) | 481883 | SAMN31016422 | haploid | Chromosome | 10 Feb 2023 | Milwaukee Public Museum | 2,237,397,408 | 37.92 | primary | reptiles |
| 708 | GCF_028858705.1 | GCF_028858705.1_bGruAme1.mat | Grus americana | whooping crane (maternal hap 2023 refseq) | 9117 | SAMN32775697 | haploid (maternal haplotype of diploid) | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,257,837,975 | 11.73 | primary | birds |
| 709 | GCF_028858725.1 | GCF_028858725.1_bColStr4.1.hap1 | Colius striatus | speckled mousebird (hap1 2023 refseq) | 57412 | SAMN33339572 | haploid | Chromosome | 24 Feb 2023 | Vertebrate Genomes Project | 1,212,482,152 | 23.44 | primary | birds |
| 710 | GCF_028858775.2 | GCF_028858775.2_NHGRI_mPanTro3-v2.0_pri | Pan troglodytes | chimpanzee (v2 AG18354 primary hap 2024 refseq) | 9598 | SAMN30216104 | haploid (principal pseudohaplotype of diploid) | Complete Genome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,177,756,316 | 49.97 | primary | primates |
| 711 | GCF_028878055.3 | GCF_028878055.3_NHGRI_mSymSyn1-v2.1_pri | Symphalangus syndactylus | siamang (v2.1 Jambi primary hap 2024 refseq) | 9590 | SAMN30216103 | haploid | Complete Genome | 05 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,262,904,224 | 55.90 | primary | primates |
| 712 | GCF_028885625.2 | GCF_028885625.2_NHGRI_mPonPyg2-v2.0_pri | Pongo pygmaeus | Bornean orangutan (v2 AG05252 primary hap 2024 refseq) | 9600 | SAMN10521809 | haploid (principal pseudohaplotype of diploid) | Complete Genome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,220,951,552 | 54.51 | primary | primates |
| 713 | GCF_028885655.2 | GCF_028885655.2_NHGRI_mPonAbe1-v2.0_pri | Pongo abelii | Sumatran orangutan (v2 AG06213 primary hap 2024 refseq) | 9601 | SAMN10521808 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,259,870,029 | 54.90 | primary | primates |
| 714 | GCF_029281585.2 | GCF_029281585.2_NHGRI_mGorGor1-v2.1_pri | Gorilla gorilla gorilla | western lowland gorilla (v2.1 KB3781 2024 refseq) | 9595 | SAMN04003007 | haploid | Chromosome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,545,850,636 | 50.91 | primary | primates |
| 715 | GCF_029289425.2 | GCF_029289425.2_NHGRI_mPanPan1-v2.0_pri | Pan paniscus | pygmy chimpanzee (v2 primary hap 2024 refseq) | 9597 | SAMN13935689 | haploid | Chromosome | 08 Jan 2024 | National Human Genome Research Institute, National Institutes of Health | 3,244,905,271 | 50.67 | primary | primates |
| 716 | GCF_029499605.1 | GCF_029499605.1_aHylSar1.hap1 | Hyla sarda | Sardinian treefrog (hap1 2023 refseq) | 327740 | SAMN32629340 | haploid | Chromosome | 07 Apr 2023 | Vertebrate Genomes Project | 4,142,159,359 | 71.09 | primary | amphibians |
| 717 | GCF_029582105.1 | GCF_029582105.1_OMel1.0 | Oenanthe melanoleuca | Eastern black-eared wheatear (GR-GAL-2019-014 2023) | 2939378 | SAMN33408179 | haploid | Chromosome | 06 Apr 2023 | Swiss Ornithological Institute | 1,036,256,795 | 20.82 | primary | birds |
| 718 | GCF_029633855.1 | GCF_029633855.1_fHopMal1.hap1 | Hoplias malabaricus | trahira (v1 hap1 2024 refseq) | 27720 | SAMN32740525 | haploid | Chromosome | 25 Jun 2024 | Vertebrate Genomes Project | 1,186,371,479 | 37.57 | primary | fish |
| 719 | GCF_029633865.1 | GCF_029633865.1_fLamInc1.hap2 | Lampris incognitus | smalleye Pacific opah (hap2 2023 refseq) | 2546036 | SAMN34060140 | haploid | Chromosome | 13 Apr 2023 | Vertebrate Genomes Project | 1,482,357,630 | 53.30 | primary | fish |
| 720 | GCF_029931775.1 | GCF_029931775.1_rEulEur1.hap1 | Euleptes europaea | European leaf-toed gecko (hap1 2023) | 460621 | SAMN32622440 | haploid | Chromosome | 15 May 2023 | Vertebrate Genomes Project | 1,781,916,107 | 49.31 | primary | reptiles |
| 721 | GCF_030014295.1 | GCF_030014295.1_mLoxAfr1.hap2 | Loxodonta africana | African savanna elephant (hap2 2023 refseq) | 9785 | SAMN32756554 | haploid | Chromosome | 16 May 2023 | Vertebrate Genomes Project | 3,540,876,381 | 49.48 | primary | mammals |
| 722 | GCF_030014385.1 | GCF_030014385.1_fTriRos1.hap1 | Trichomycterus rosablanca | Andian cavefish (hap1 2023 refseq) | 2290929 | SAMN32755940 | haploid | Chromosome | 16 May 2023 | Vertebrate Genomes Project | 1,045,025,885 | 49.04 | primary | fish |
| 723 | GCF_030020395.1 | GCF_030020395.1_mManPen7.hap1 | Manis pentadactyla | Chinese pangolin (hap1 2023) | 143292 | SAMN32757332 | haploid | Chromosome | 23 May 2023 | Vertebrate Genomes Project | 2,840,164,579 | 40.49 | primary | mammals |
| 724 | GCF_030028045.1 | GCF_030028045.1_mHipAmp2.hap2 | Hippopotamus amphibius kiboko | hippopotamus (v2 hap2 2023 refseq) | 575201 | SAMN33342074 | haploid | Chromosome | 18 May 2023 | Vertebrate Genomes Project | 2,538,259,262 | 37.38 | primary | mammals |
| 725 | GCF_030028105.1 | GCF_030028105.1_sMobBir1.hap1 | Mobula birostris | giant manta (hap1 2023 refseq) | 1983395 | SAMN32746370 | haploid (haplotype 1) | Chromosome | 22 May 2023 | Vertebrate Genomes Project | 4,014,635,230 | 54.43 | primary | sharks |
| 726 | GCF_030035675.1 | GCF_030035675.1_rRhiFlo1.hap2 | Rhineura floridana | Florida worm lizard (hap2 2023 refseq) | 261503 | SAMN34105704 | haploid | Chromosome | 22 May 2023 | Vertebrate Genomes Project | 2,307,419,594 | 45.32 | primary | reptiles |
| 727 | GCF_030144855.1 | GCF_030144855.1_sHypSab1.hap1 | Hypanus sabinus | Atlantic stingray (hap1 2023 refseq) | 79690 | SAMN32745077 | haploid | Chromosome | 05 Jun 2023 | Vertebrate Genomes Project | 4,044,869,043 | 61.77 | primary | sharks |
| 728 | GCF_030435755.1 | GCF_030435755.1_mOchPri1.hap1 | Ochotona princeps | American pika (hap1 2023) | 9978 | SAMN35822658 | haploid | Chromosome | 13 Jul 2023 | Vertebrate Genomes Project | 2,555,444,530 | 43.65 | primary | mammals |
| 729 | GCF_030435805.1 | GCF_030435805.1_mMusLut2.pri | Mustela lutreola | European mink (primary hap 2023 refseq) | 9666 | SAMN35784236 | haploid (principal pseudohaplotype of diploid) | Chromosome | 13 Jul 2023 | Vertebrate Genomes Project | 2,586,268,927 | 37.06 | primary | mammals |
| 730 | GCF_030445035.2 | GCF_030445035.2_mDasNov1.1.hap2 | Dasypus novemcinctus | nine-banded armadillo (v2 hap2 2023) | 9361 | SAMN32738980 | haploid (haplotype 2) | Chromosome | 13 Jul 2023 | Vertebrate Genomes Project | 3,610,551,914 | 53.17 | primary | mammals |
| 731 | GCF_030463535.1 | GCF_030463535.1_fSalBra1.hap2 | Salminus brasiliensis | dorado (hap2 2023 refseq) | 930266 | SAMN35075251 | haploid (haplotype 2) | Chromosome | 14 Jul 2023 | Vertebrate Genomes Project | 1,066,483,687 | 36.78 | primary | fish |
| 732 | GCF_030490865.1 | GCF_030490865.1_bPoeAtr1.hap1 | Poecile atricapillus | black-capped chickadee (hap1 2023) | 48891 | SAMN35074507 | haploid | Chromosome | 18 Jul 2023 | Vertebrate Genomes Project | 1,251,133,642 | 15.80 | primary | birds |
| 733 | GCF_030684315.1 | GCF_030684315.1_sSteTig4.hap1 | Stegostoma tigrinum | zebra shark (hap1 2023 refseq) | 3053191 | SAMN35823397 | haploid | Chromosome | 08 Aug 2023 | Vertebrate Genomes Project | 3,198,515,386 | 64.64 | primary | sharks |
| 734 | GCF_030867095.1 | GCF_030867095.1_rAllMis1 | Alligator mississippiensis | American alligator (2023 refseq) | 8496 | SAMN37045233 | haploid | Chromosome | 24 Aug 2023 | Vertebrate Genomes Project | 2,346,795,873 | 42.90 | primary | reptiles |
| 735 | GCF_030936135.1 | GCF_030936135.1_bGavSte3.hap2 | Gavia stellata | red-throated loon (hap2 2023 refseq) | 37040 | SAMN37096312 | haploid | Chromosome | 30 Aug 2023 | Vertebrate Genomes Project | 1,321,270,170 | 14.85 | primary | birds |
| 736 | GCF_031021105.1 | GCF_031021105.1_rEryReg1.hap1 | Erythrolamprus reginae | royal ground snake (hap1 2023 refseq) | 121349 | SAMN32631248 | haploid (haplotype 1) | Chromosome | 31 Aug 2023 | Vertebrate Genomes Project | 1,964,049,041 | 59.53 | primary | reptiles |
| 737 | GCF_032444005.1 | GCF_032444005.1_aRanImi1.pri | Ranitomeya imitator | mimic poison frog (primary hap 2023 refseq) | 111125 | SAMN32907850 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Oct 2023 | Vertebrate Genomes Project | 5,956,610,564 | 76.48 | primary | amphibians |
| 738 | GCF_035084215.1 | GCF_035084215.1_sHepPer1.hap1 | Heptranchias perlo | sharpnose sevengill shark (hap1 2024 genbank) | 212740 | SAMN38891902 | haploid (haplotype 1) | Chromosome | 05 Jan 2024 | Vertebrate Genomes Project | 3,249,915,908 | 62.33 | primary | sharks |
| 739 | GCF_035149785.1 | GCF_035149785.1_rCanAsp1.hap2 | Candoia aspera | Papuan ground boa (hap2 2024 refseq) | 51853 | SAMN37159891 | haploid | Chromosome | 18 Jan 2024 | Vertebrate Genomes Project | 1,530,810,380 | 33.56 | primary | reptiles |
| 740 | GCF_035609145.1 | GCF_035609145.1_aEleCoq1.hap1 | Eleutherodactylus coqui | Puerto Rican coqui (hap1 2024 refseq) | 57060 | SAMN39150572 | haploid (haplotype 1) | Chromosome | 12 Jan 2024 | Vertebrate Genomes Project | 3,371,297,528 | 54.01 | primary | amphibians |
| 741 | GCF_035770615.1 | GCF_035770615.1_bMelMel2.pri | Melospiza melodia melodia | song sparrow (primary hap 2024 refseq) | 1914991 | SAMN35847297 | haploid (principal pseudohaplotype of diploid) | Chromosome | 24 Jan 2024 | Vertebrate Genomes Project | 1,541,245,192 | 39.28 | primary | birds |
| 742 | GCF_036013445.1 | GCF_036013445.1_bCalNic1.hap1 | Caloenas nicobarica | Nicobar pigeon (hap1 2024 refseq) | 187106 | SAMN39256628 | haploid (haplotype 1) | Chromosome | 26 Jan 2024 | Vertebrate Genomes Project | 1,285,834,579 | 19.62 | primary | birds |
| 743 | GCF_036013475.1 | GCF_036013475.1_bColLiv1.pat.W.v2 | Columba livia | rock pigeon (v2 racing homer 2024 refseq) | 8932 | SAMN38891892 | haploid (paternal haplotype of diploid) | Chromosome | 08 Apr 2024 | Vertebrate Genomes Project | 1,325,566,026 | 20.36 | primary | birds |
| 744 | GCF_036169615.1 | GCF_036169615.1_bHelExo1.hap1 | Heliangelus exortis | tourmaline sunangel (hap1 2024 refseq) | 472823 | SAMN37253778 | haploid (haplotype 1) | Chromosome | 26 Jan 2024 | Vertebrate Genomes Project | 1,049,650,714 | 21.23 | primary | birds |
| 745 | GCF_036172605.1 | GCF_036172605.1_aPelFus1.pri | Pelobates fuscus | common spadefoot toad (primary hap 2024 refseq) | 191477 | SAMN39244120 | haploid | Chromosome | 26 Jan 2024 | Vertebrate Genomes Project | 3,606,456,729 | 51.45 | primary | amphibians |
| 746 | GCF_036250125.1 | GCF_036250125.1_bDixPip1.hap1 | Pseudopipra pipra | white-crowned manakin (hap1 2024 refseq) | 415032 | SAMN32739894 | haploid | Chromosome | 31 Jan 2024 | Vertebrate Genomes Project | 1,165,201,947 | 21.92 | primary | birds |
| 747 | GCF_036321535.1 | GCF_036321535.1_mCamDro1.pat | Camelus dromedarius | Arabian camel (paternal hap 2024 refseq) | 9838 | SAMN39296380 | haploid (paternal haplotype of diploid) | Chromosome | 31 Jan 2024 | Vertebrate Genomes Project | 2,306,603,094 | 33.51 | primary | mammals |
| 748 | GCF_036365525.1 | GCF_036365525.1_sHetFra1.hap1 | Heterodontus francisci | horn shark (sHetFra1hap1 2024) | 7792 | SAMN39432692 | haploid (haplotype 1) | Chromosome | 06 Feb 2024 | Vertebrate Genomes Project | 6,013,048,672 | 68.67 | primary | sharks |
| 749 | GCF_036370855.1 | GCF_036370855.1_bDroNov1.hap1 | Dromaius novaehollandiae | emu (hap1 2024) | 8790 | SAMN39262816 | haploid | Chromosome | 26 Feb 2024 | Vertebrate Genomes Project | 1,468,706,110 | 24.07 | primary | birds |
| 750 | GCF_036373705.1 | GCF_036373705.1_fAmiCal2.hap1 | Amia calva | bowfin (hap1 2024 refseq) | 7924 | SAMN39643085 | haploid (haplotype 1) | Chromosome | 06 Feb 2024 | Vertebrate Genomes Project | 989,103,751 | 37.37 | primary | fish |
| 751 | GCF_036417665.1 | GCF_036417665.1_bPasDom1.hap1 | Passer domesticus | house sparrow (hap1 2024 refseq) | 48849 | SAMN39255856 | haploid | Chromosome | 07 Feb 2024 | Vertebrate Genomes Project | 1,310,131,054 | 26.39 | primary | birds |
| 752 | GCF_036417845.1 | GCF_036417845.1_bAptMan1.hap1 | Apteryx mantelli | North Island brown kiwi (hap1 2024 refseq) | 2696672 | SAMN39257886 | haploid (haplotype 1) | Chromosome | 06 Feb 2024 | Vertebrate Genomes Project | 1,504,396,159 | 21.93 | primary | birds |
| 753 | GCF_036850765.1 | GCF_036850765.1_mSacBil1_pri_phased_curated | Saccopteryx bilineata | greater sac-winged bat (primary hap 2024 refseq) | 59482 | SAMN37288508 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Feb 2024 | Bat1K | 2,612,309,609 | 42.95 | primary | mammals |
| 754 | GCF_036850995.1 | GCF_036850995.1_mSacLep1_pri_phased_curated | Saccopteryx leptura | lesser sac-winged bat (primary hap 2024 refseq) | 249018 | SAMN37390139 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Feb 2024 | Bat1K | 2,576,513,769 | 42.56 | primary | mammals |
| 755 | GCF_036971445.1 | GCF_036971445.1_sNarBan1.hap1 | Narcine bancroftii | Caribbean electric ray (hap1 2024 refseq) | 1343680 | SAMN39325148 | haploid (haplotype 1) | Chromosome | 06 Mar 2024 | Vertebrate Genomes Project | 3,328,432,768 | 54.80 | primary | sharks |
| 756 | GCF_037038585.1 | GCF_037038585.1_bPatFas1.hap1 | Patagioenas fasciata | band-tailed pigeon (hap1 2025) | 372321 | SAMN40018840 | haploid (haplotype 1) | Chromosome | 07 Feb 2025 | Vertebrate Genomes Project | 1,454,324,034 | 23.22 | secondary | birds |
| 757 | GCF_037157495.1 | GCF_037157495.1_bLatDis1.hap1 | Lathamus discolor | swift parrot (hap1 2024) | 678569 | SAMN40289871 | haploid (haplotype 1) | Chromosome | 15 Mar 2024 | Vertebrate Genomes Project | 1,241,003,407 | 16.81 | primary | birds |
| 758 | GCF_037176765.1 | GCF_037176765.1_rAnoSag1.mat | Anolis sagrei | Brown anole (maternal hap 2024 refseq) | 38937 | SAMN40144551 | haploid (maternal haplotype of diploid) | Chromosome | 15 Mar 2024 | Vertebrate Genomes Project | 1,950,830,970 | 53.77 | primary | reptiles |
| 759 | GCF_037176945.1 | GCF_037176945.1_fLatCha1.pri | Latimeria chalumnae | coelacanth (fLatCha1 primary hap 2024) | 7897 | SAMN39710040 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Mar 2024 | Vertebrate Genomes Project | 2,947,609,019 | 54.45 | primary | fish |
| 760 | GCF_037993035.1 | GCF_037993035.1_T2T-MFA8v1.0 | Macaca fascicularis | crab-eating macaque (582-1 2024) | 9541 | SAMN38317298 | haploid | Complete Genome | 05 Apr 2024 | Shanghai Jiao Tong University | 3,042,914,375 | 52.97 | primary | primates |
| 761 | GCF_039877785.1 | GCF_039877785.1_fChaTrf1.hap1 | Chaetodon trifascialis | chevron butterflyfish (hap1 2024 refseq) | 109706 | SAMN41253346 | haploid (haplotype 1) | Chromosome | 29 May 2024 | Vertebrate Genomes Project | 662,489,023 | 24.65 | primary | fish |
| 762 | GCF_039906515.1 | GCF_039906515.1_mPseCra1.hap1 | Pseudorca crassidens | false killer whale (hap1 2024 refseq) | 82174 | SAMN41253811 | haploid (haplotype 1) | Chromosome | 31 May 2024 | Vertebrate Genomes Project | 2,674,592,094 | 41.51 | primary | mammals |
| 763 | GCF_040182565.1 | GCF_040182565.1_Taihu_goose_T2T_genome | Anser cygnoides | Swan (goose HZ-2024a 2024) | 8845 | SAMN41386743 | haploid | Chromosome | 14 Jun 2024 | Jiangsu Agri-animal Husbandry Vocational College | 1,215,354,515 | 24.67 | primary | birds |
| 764 | GCF_040807025.1 | GCF_040807025.1_bStrCam1.hap1 | Struthio camelus | African ostrich (bStrCam1hap1 2024) | 8801 | SAMN42123890 | haploid (haplotype 1) | Chromosome | 22 Jul 2024 | Vertebrate Genomes Project | 1,452,018,929 | 14.40 | primary | birds |
| 765 | GCF_040869285.1 | GCF_040869285.1_UKY_Mglu_1.0 | Myxine glutinosa | Atlantic hagfish (MG_SS 2024) | 7769 | SAMN41069696 | haploid | Chromosome | 30 Jul 2024 | University of Kentucky | 3,829,277,745 | 75.19 | secondary | otherChordates |
| 766 | GCF_040894005.1 | GCF_040894005.1_aEngPut4.maternal | Engystomops pustulosus | Tungara frog (aEngPut4 maternal hap 2024 refseq) | 76066 | SAMN42463661 | haploid (maternal haplotype of diploid) | Chromosome | 30 Jul 2024 | Vertebrate Genomes Project | 2,158,203,323 | 52.56 | primary | amphibians |
| 767 | GCF_040937935.1 | GCF_040937935.1_aHypRig1.pri | Hyperolius riggenbachi | Riggenbach's reed frog (aHypRig1 primary hap 2024) | 752182 | SAMN42123895 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Jul 2024 | Vertebrate Genomes Project | 4,915,935,452 | 70.38 | primary | amphibians |
| 768 | GCF_040938575.1 | GCF_040938575.1_UKY_AmexF1_1 | Ambystoma mexicanum | axolotl (Mex_15411 2024) | 8296 | SAMN43142723 | haploid | Chromosome | 30 Jul 2024 | University of Kentucky | 29,117,864,639 | 67.13 | primary | amphibians |
| 769 | GCF_040954835.1 | GCF_040954835.1_fLepOcu1.hap2 | Lepisosteus oculatus | spotted gar (fLepOcu1hap2 2024) | 7918 | SAMN41155427 | haploid (haplotype 2) | Chromosome | 01 Aug 2024 | Vertebrate Genomes Project | 1,200,589,847 | 39.20 | primary | fish |
| 770 | GCF_042242105.1 | GCF_042242105.1_fPemKlu1.hap1 | Pempheris klunzingeri | rouch bullseye (RE-2024b hap1 2024 refseq) | 3127111 | SAMN40589649 | haploid (haplotype 1) | Chromosome | 25 Sep 2024 | (n/a) | 646,252,061 | 24.57 | primary | fish |
| 771 | GCF_042477335.2 | GCF_042477335.2_ARS-UI_OviCan_v2 | Ovis canadensis | bighorn sheep (v2 Bighorn MfBH-ARS-UI-01 2024) | 37174 | (n/a) | haploid | Chromosome | 18 Oct 2024 | Sheep Pangenome | 2,974,283,533 | 46.87 | primary | mammals |
| 772 | GCF_043159975.1 | GCF_043159975.1_mMacNem.hap1 | Macaca nemestrina | pig-tailed macaque (mMacNem1hap1 2024 refseq) | 9545 | SAMN41827875 | haploid (haplotype 1) | Chromosome | 15 Oct 2024 | Vertebrate Genomes Project | 3,116,288,670 | 53.59 | primary | mammals |
| 773 | GCF_043641665.1 | GCF_043641665.1_fEnoArm2.hap1 | Enoplosus armatus | old wife E.armatus (hap1 2024) | 215367 | SAMN40589647 | haploid (haplotype 1) | Chromosome | 30 Oct 2024 | Ocean Genomes | 579,897,767 | 23.12 | primary | fish |
| 774 | GCF_044704955.1 | GCF_044704955.1_sPriJap1.hap1 | Pristiophorus japonicus | Japanese sawshark (hap1 2024 refseq) | 55135 | SAMN44116980 | haploid (haplotype 1) | Chromosome | 13 Nov 2024 | Vertebrate Genomes Project | 5,923,069,295 | 71.47 | primary | sharks |
| 775 | GCF_047511675.1 | GCF_047511675.1_mMarFla1.hap1 | Marmota flaviventris | yellow-bellied marmot (hap1 2025 refseq) | 93162 | SAMN45932315 | haploid (haplotype 1) | Chromosome | 10 Feb 2025 | Vertebrate Genomes Project | 2,704,651,887 | 34.99 | primary | mammals |
| 776 | GCF_048164855.1 | GCF_048164855.1_mCanLup2.hap1 | Canis lupus baileyi | Mexican gray wolf (hap1 2025 refseq) | 143281 | SAMN46796784 | haploid (haplotype 1) | Chromosome | 27 Feb 2025 | Vertebrate Genomes Project | 2,495,589,887 | 35.20 | primary | mammals |
| 777 | GCF_900324465.2 | GCF_900324465.2_fAnaTes1.2 | Anabas testudineus | climbing perch (v1.2 2018 refseq) | 64144 | SAMEA104026376 | haploid (principal pseudohaplotype of diploid) | Chromosome | 19 Dec 2018 | SC | 555,658,001 | 21.33 | primary | fish |
| 778 | GCF_900324485.2 | GCF_900324485.2_fMasArm1.2 | Mastacembelus armatus | zig-zag eel (v1.2 2019 refseq) | 205130 | SAMEA104026378 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Mar 2019 | SC | 591,951,587 | 20.76 | primary | fish |
| 779 | GCF_900496995.4 | GCF_900496995.4_bAquChr1.4 | Aquila chrysaetos chrysaetos | golden eagle (v1.4 2021) | 223781 | SAMEA994725 | haploid (principal pseudohaplotype of diploid) | Chromosome | 26 Mar 2021 | Wellcome Sanger Institute | 1,233,704,830 | 8.95 | primary | birds |
| 780 | GCF_900634415.1 | GCF_900634415.1_fCotGob3.1 | Cottoperca gobio | channel bull blenny (2019 refseq) | 56716 | SAMEA104242975 | haploid | Chromosome | 06 Feb 2019 | SC | 609,391,784 | 26.02 | primary | fish |
| 781 | GCF_900634625.1 | GCF_900634625.1_fParRan2.1 | Parambassis ranga | Indian glassy fish (v1 2019) | 210632 | SAMEA4675621 | haploid | Chromosome | 06 Feb 2019 | SC | 551,012,959 | 22.27 | primary | fish |
| 782 | GCF_900634775.1 | GCF_900634775.1_fGouWil2.1 | Gouania willdenowi | blunt-snouted clingfish (v1 2019 refseq) | 441366 | SAMEA104026382 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Feb 2019 | SC | 937,150,793 | 51.94 | primary | fish |
| 783 | GCF_900634795.4 | GCF_900634795.4_fBetSpl5.4 | Betta splendens | Siamese fighting fish (v4 primary hap 2023) | 158456 | SAMEA104381735 | haploid (principal pseudohaplotype of diploid) | Chromosome | 10 Mar 2023 | Wellcome Sanger Institute | 427,001,245 | 23.21 | primary | fish |
| 784 | GCF_900700375.1 | GCF_900700375.1_fDenClu1.1 | Denticeps clupeoides | denticle herring (v1 2019) | 299321 | SAMEA104129917 | haploid | Chromosome | 16 Mar 2019 | SC | 567,401,054 | 28.46 | primary | fish |
| 785 | GCF_900747795.2 | GCF_900747795.2_fErpCal1.3 | Erpetoichthys calabaricus | reedfish (2021) | 27687 | SAMEA104026374 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Jul 2021 | Wellcome Sanger Institute | 3,613,551,144 | 59.63 | primary | fish |
| 786 | GCF_900880675.1 | GCF_900880675.1_fSpaAur1.1 | Sparus aurata | gilthead seabream (v1 2019) | 8175 | SAMEA104384835 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Jul 2019 | SC | 833,595,063 | 31.86 | primary | fish |
| 787 | GCF_900963305.1 | GCF_900963305.1_fEcheNa1.1 | Echeneis naucrates | live sharksucker (v1 2019) | 173247 | SAMEA4966390 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 Apr 2019 | SC | 544,229,245 | 15.10 | primary | fish |
| 788 | GCF_900964775.1 | GCF_900964775.1_fSclFor1.1 | Scleropages formosus | Asian bonytongue (2019) | 113540 | SAMEA4872123 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 Apr 2019 | SC | 784,563,014 | 27.43 | primary | fish |
| 789 | GCF_901000725.2 | GCF_901000725.2_fTakRub1.2 | Takifugu rubripes | torafugu (fTakRub1.2 2019 refseq) | 31033 | SAMEA104384834 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Jun 2019 | SC | 384,126,662 | 16.51 | primary | fish |
| 790 | GCF_901001135.1 | GCF_901001135.1_aRhiBiv1.1 | Rhinatrema bivittatum | two-lined caecilian (v1.1 2019 refseq) | 194408 | SAMEA104387956 | haploid (principal pseudohaplotype of diploid) | Chromosome | 02 Jun 2019 | SC | 5,319,239,201 | 66.86 | primary | amphibians |
| 791 | GCF_901709675.1 | GCF_901709675.1_fSynAcu1.2 | Syngnathus acus | greater pipefish (v1.2 2020 refseq) | 161584 | SAMEA104381750 | haploid | Chromosome | 31 Jul 2020 | SC | 324,331,233 | 25.04 | primary | fish |
| 792 | GCF_902148845.1 | GCF_902148845.1_fSalaFa1.1 | Salarias fasciatus | jewelled blenny (2019) | 181472 | SAMEA4966329 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Jul 2019 | SC | 797,507,141 | 27.86 | primary | fish |
| 793 | GCF_902148855.1 | GCF_902148855.1_fSphaOr1.1 | Sphaeramia orbicularis | orbiculate cardinalfish (2019) | 375764 | SAMEA4966328 | haploid | Chromosome | 03 Jul 2019 | SC | 1,342,662,642 | 52.92 | primary | fish |
| 794 | GCF_902150065.1 | GCF_902150065.1_fMyrMur1.1 | Myripristis murdjan | pinecone soldierfish (2019) | 586833 | SAMEA4872133 | haploid | Chromosome | 03 Jul 2019 | SC | 835,254,674 | 32.39 | primary | fish |
| 795 | GCF_902167405.1 | GCF_902167405.1_gadMor3.0 | Gadus morhua | Atlantic cod (2019) | 8049 | SAMEA5574046 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Jul 2019 | SC | 669,966,409 | 36.97 | primary | fish |
| 796 | GCF_902362185.1 | GCF_902362185.1_fChaCha1.1 | Chanos chanos | milkfish (2019) | 29144 | SAMEA5159473 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Aug 2019 | SC | 656,929,047 | 20.58 | primary | fish |
| 797 | GCF_902459465.1 | GCF_902459465.1_eAstRub1.3 | Asterias rubens | European starfish (2020) | 7604 | SAMEA994741 | haploid | Chromosome | 12 Feb 2020 | SC | 417,601,740 | 45.16 | primary | echinoderm |
| 798 | GCF_902459505.1 | GCF_902459505.1_aGeoSer1.1 | Geotrypetes seraphini | Gaboon caecilian (v1.1 2019 refseq) | 260995 | SAMEA104387963 | haploid (principal pseudohaplotype of diploid) | Chromosome | 18 Aug 2019 | SC | 3,779,430,019 | 71.40 | primary | amphibians |
| 799 | GCF_902500255.1 | GCF_902500255.1_fThaAma1.1 | Thalassophryne amazonica | prehistoric monster fish (2019 refseq) | 390379 | SAMEA104129913 | haploid (principal pseudohaplotype of diploid) | Chromosome | 30 Sep 2019 | SC | 2,446,592,878 | 72.03 | primary | fish |
| 800 | GCF_902655055.1 | GCF_902655055.1_mLutLut1.2 | Lutra lutra | Eurasian river otter (2020) | 9657 | SAMEA994731 | haploid | Chromosome | 31 Jul 2020 | SC | 2,438,458,878 | 34.39 | primary | mammals |
| 801 | GCF_902686445.1 | GCF_902686445.1_mSciCar1.2 | Sciurus carolinensis | gray squirrel (2020) | 30640 | SAMEA994726 | haploid | Chromosome | 31 Jul 2020 | SC | 2,815,397,268 | 36.31 | primary | mammals |
| 802 | GCF_902713425.1 | GCF_902713425.1_fAciRut3.2_maternal_haplotype | Acipenser ruthenus | sterlet (maternal hap 2022 refseq) | 7906 | SAMEA5572864 | haploid | Chromosome | 02 Feb 2022 | Wellcome Sanger Institute | 1,899,810,788 | 45.25 | primary | fish |
| 803 | GCF_902713615.1 | GCF_902713615.1_sScyCan1.1 | Scyliorhinus canicula | smaller spotted catshark (v1.1 primary hap 2020 refseq) | 7830 | SAMEA994730 | haploid | Chromosome | 17 Dec 2020 | SC | 4,220,406,627 | 68.76 | primary | sharks |
| 804 | GCF_903992535.2 | GCF_903992535.2_mArvAmp1.2 | Arvicola amphibius | Eurasian water vole (v2 2021) | 1047088 | SAMEA994740 | haploid | Chromosome | 15 May 2021 | Wellcome Sanger Institute | 2,297,766,297 | 34.76 | primary | mammals |
| 805 | GCF_903995425.1 | GCF_903995425.1_mOncTor1.1 | Onychomys torridus | southern grasshopper mouse (2020) | 38674 | SAMEA104026389 | haploid | Chromosome | 21 Aug 2020 | SC | 2,468,394,440 | 36.22 | primary | mammals |
| 806 | GCF_903995435.1 | GCF_903995435.1_mAcoRus1.1 | Acomys russatus | golden spiny mouse (2020) | 60746 | SAMEA104026431 | haploid | Chromosome | 21 Aug 2020 | SC | 2,301,522,284 | 33.83 | primary | mammals |
| 807 | GCF_904848185.1 | GCF_904848185.1_fAcaLat1.1 | Acanthopagrus latus | yellowfin seabream (v.2019 primary hap 2020) | 8177 | SAMN16236878 | haploid | Chromosome | 12 Oct 2020 | SC | 685,144,197 | 23.16 | primary | fish |
| 808 | GCF_905171765.1 | GCF_905171765.1_aBufBuf1.1 | Bufo bufo | common toad (primary hap 2021) | 8384 | SAMEA7521636 | haploid | Chromosome | 28 Jan 2021 | Wellcome Sanger Institute | 5,044,744,194 | 76.82 | primary | amphibians |
| 809 | GCF_905171775.1 | GCF_905171775.1_aRanTem1.1 | Rana temporaria | European common frog (2021) | 8407 | SAMEA7521635 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Jan 2021 | Wellcome Sanger Institute | 4,111,422,596 | 68.59 | primary | amphibians |
| 810 | GCF_910594005.1 | GCF_910594005.1_mCerEla1.1 | Cervus elaphus | red deer (2021) | 9860 | SAMEA7523520 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Jul 2021 | WELLCOME SANGER INSTITUTE | 2,886,603,524 | 44.67 | primary | mammals |
| 811 | GCF_910596095.1 | GCF_910596095.1_fThuMac1.1 | Thunnus maccoyii | southern bluefin tuna (primary hap 2021 refseq) | 8240 | SAMEA8654747 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Jul 2021 | Wellcome Sanger Institute | 782,423,979 | 29.63 | primary | fish |
| 812 | GCF_914725855.1 | GCF_914725855.1_fThuAlb1.1 | Thunnus albacares | yellowfin tuna (primary hap 2021) | 8236 | SAMEA8654749 | haploid (principal pseudohaplotype of diploid) | Chromosome | 16 Sep 2021 | WELLCOME SANGER INSTITUTE | 792,101,331 | 30.47 | primary | fish |
| 813 | GCF_922984935.1 | GCF_922984935.1_mMelMel3.1_paternal_haplotype | Meles meles | Eurasian badger (v3.1 2021) | 9662 | SAMEA7524400 | haploid | Chromosome | 19 Dec 2021 | WELLCOME SANGER INSTITUTE | 2,738,694,446 | 38.15 | primary | mammals |
| 814 | GCF_929443795.1 | GCF_929443795.1_bAccGen1.1 | Astur gentilis | northern goshawk (v1 primary hap 2022 refseq) | 8957 | SAMEA8235650 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Feb 2022 | WELLCOME SANGER INSTITUTE | 1,398,011,397 | 18.04 | primary | birds |
| 815 | GCF_937001465.1 | GCF_937001465.1_mOrcOrc1.1 | Orcinus orca | killer whale (2022) | 9733 | SAMEA8800229 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 May 2022 | WELLCOME SANGER INSTITUTE | 2,647,351,467 | 42.14 | primary | mammals |
| 816 | GCF_947179515.1 | GCF_947179515.1_mApoSyl1.1 | Apodemus sylvaticus | European woodmouse (2022 refseq) | 10129 | SAMEA7702024 | haploid (principal pseudohaplotype of diploid) | Chromosome | 28 Oct 2022 | WELLCOME SANGER INSTITUTE | 2,889,785,202 | 44.86 | primary | mammals |
| 817 | GCF_947347685.1 | GCF_947347685.1_fPlePla1.1 | Pleuronectes platessa | European plaice (primary hap 2022 refseq) | 8262 | SAMEA13853390 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Nov 2022 | WELLCOME SANGER INSTITUTE | 687,388,084 | 32.65 | primary | fish |
| 818 | GCF_947461875.1 | GCF_947461875.1_bHalAlb1.1 | Haliaeetus albicilla | white-tailed eagle (primary hap 2022 refseq) | 8969 | SAMEA12857288 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Dec 2022 | WELLCOME SANGER INSTITUTE | 1,320,315,924 | 23.68 | primary | birds |
| 819 | GCF_949316205.1 | GCF_949316205.1_fPlaFle2.1 | Platichthys flesus | European flounder (primary hap 2023 refseq) | 8260 | SAMEA110026475 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Apr 2023 | WELLCOME SANGER INSTITUTE | 597,120,941 | 27.16 | primary | fish |
| 820 | GCF_949316345.1 | GCF_949316345.1_fPunPun2.1 | Pungitius pungitius | ninespine stickleback (primary hap 2023 refseq) | 134920 | SAMEA11296545 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 480,434,100 | 28.40 | primary | fish |
| 821 | GCF_949774975.1 | GCF_949774975.1_mLagAlb1.1 | Lagenorhynchus albirostris | white-beaked dolphin (primary hap 2023 refseq) | 27610 | SAMEA111380537 | haploid (principal pseudohaplotype of diploid) | Chromosome | 08 Apr 2023 | WELLCOME SANGER INSTITUTE | 2,544,835,795 | 40.53 | primary | mammals |
| 822 | GCF_949987515.2 | GCF_949987515.2_mDelDel1.2 | Delphinus delphis | saddleback dolphin (v2 primary hap 2024 refseq) | 9728 | SAMEA111380534 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,663,516,986 | 42.65 | primary | mammals |
| 823 | GCF_949987535.1 | GCF_949987535.1_mBalAcu1.1 | Balaenoptera acutorostrata | minke whale (primary hap 2023 refseq) | 9767 | SAMEA111380540 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 May 2023 | WELLCOME SANGER INSTITUTE | 2,772,885,358 | 44.23 | primary | mammals |
| 824 | GCF_950005125.1 | GCF_950005125.1_mChiNiv1.1 | Chionomys nivalis | European snow vole (primary hap 2023 refseq) | 269649 | SAMEA13217622 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 May 2023 | WELLCOME SANGER INSTITUTE | 2,393,390,621 | 44.15 | primary | mammals |
| 825 | GCF_950295315.1 | GCF_950295315.1_mEriEur2.1 | Erinaceus europaeus | western European hedgehog (primary hap 2023 refseq) | 9365 | SAMEA13207416 | haploid (principal pseudohaplotype of diploid) | Chromosome | 01 May 2023 | WELLCOME SANGER INSTITUTE | 2,720,683,831 | 55.37 | primary | mammals |
| 826 | GCF_958295425.1 | GCF_958295425.1_fSolSol10.1 | Solea solea | common sole (primary hap 2023 refseq) | 90069 | SAMEA10984647 | haploid (principal pseudohaplotype of diploid) | Chromosome | 06 Jul 2023 | WELLCOME SANGER INSTITUTE | 643,757,955 | 30.92 | primary | fish |
| 827 | GCF_963082965.1 | GCF_963082965.1_fCarCar2.1 | Carassius carassius | crucian carp (primary hap 2023 refseq) | 217509 | SAMEA11296534 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Aug 2023 | WELLCOME SANGER INSTITUTE | 1,684,296,438 | 48.16 | primary | fish |
| 828 | GCF_963259705.1 | GCF_963259705.1_mMyoDau2.1 | Myotis daubentonii | Daubenton's bat (primary hap 2023 refseq) | 98922 | SAMEA9921455 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Aug 2023 | WELLCOME SANGER INSTITUTE | 2,127,807,131 | 36.53 | primary | mammals |
| 829 | GCF_963455315.2 | GCF_963455315.2_mGloMel1.2 | Globicephala melas | long-finned pilot whale (v2 primary hap 2024 refseq) | 9731 | SAMEA111380538 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Sep 2024 | WELLCOME SANGER INSTITUTE | 2,651,276,051 | 42.02 | primary | mammals |
| 830 | GCF_963506605.1 | GCF_963506605.1_rZooViv1.1 | Zootoca vivipara | common lizard Z.vivipara (primary hap 2023) | 8524 | SAMEA111528662 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Sep 2023 | WELLCOME SANGER INSTITUTE | 1,440,239,386 | 45.64 | primary | reptiles |
| 831 | GCF_963514075.1 | GCF_963514075.1_fConCon1.1 | Conger conger | European conger (primary hap 2023 refseq) | 82655 | SAMEA12219431 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Sep 2023 | WELLCOME SANGER INSTITUTE | 1,136,402,888 | 36.74 | primary | fish |
| 832 | GCF_963576545.1 | GCF_963576545.1_fLimLim1.1 | Limanda limanda | common dab (primary hap 2023) | 27771 | SAMEA112765706 | haploid (principal pseudohaplotype of diploid) | Chromosome | 03 Nov 2023 | WELLCOME SANGER INSTITUTE | 717,580,706 | 35.04 | primary | fish |
| 833 | GCF_963584025.1 | GCF_963584025.1_fLabMix1.1 | Labrus mixtus | cuckoo wrasse (primary hap 2023) | 508554 | SAMEA111562155 | haploid (principal pseudohaplotype of diploid) | Chromosome | 05 Nov 2023 | WELLCOME SANGER INSTITUTE | 740,563,171 | 33.86 | primary | fish |
| 834 | GCF_963662255.1 | GCF_963662255.1_bCinCin1.1 | Cinclus cinclus | white-throated dipper (primary hap 2023 refseq) | 127875 | SAMEA9679959 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 Dec 2023 | WELLCOME SANGER INSTITUTE | 1,170,837,027 | 26.63 | primary | birds |
| 835 | GCF_963691925.1 | GCF_963691925.1_fScoSco1.1 | Scomber scombrus | Atlantic mackerel (primary hap 2023 refseq) | 13677 | SAMEA110450232 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Dec 2023 | WELLCOME SANGER INSTITUTE | 764,141,294 | 29.96 | primary | fish |
| 836 | GCF_963692335.1 | GCF_963692335.1_fOsmEpe2.1 | Osmerus eperlanus | European smelt (primary hap 2023 refseq) | 29151 | SAMEA14448128 | haploid (principal pseudohaplotype of diploid) | Chromosome | 11 Dec 2023 | WELLCOME SANGER INSTITUTE | 508,721,272 | 35.92 | primary | fish |
| 837 | GCF_963854185.1 | GCF_963854185.1_fSarPil1.1 | Sardina pilchardus | sardine (primary hap 2023 refseq) | 27697 | SAMEA111562172 | haploid (principal pseudohaplotype of diploid) | Chromosome | 14 Dec 2023 | WELLCOME SANGER INSTITUTE | 869,396,467 | 37.59 | primary | fish |
| 838 | GCF_963921805.1 | GCF_963921805.1_bPhaCar2.1 | Phalacrocorax carbo | great cormorant (primary hap 2024 refseq) | 9209 | SAMEA8228692 | haploid (principal pseudohaplotype of diploid) | Chromosome | 09 Feb 2024 | WELLCOME SANGER INSTITUTE | 1,283,623,959 | 13.41 | primary | birds |
| 839 | GCF_963924245.1 | GCF_963924245.1_bChrRid1.1 | Chroicocephalus ridibundus | black-headed gull (primary hap 2024 refseq) | 1192867 | SAMEA112468038 | haploid (principal pseudohaplotype of diploid) | Chromosome | 20 Jan 2024 | WELLCOME SANGER INSTITUTE | 1,417,554,307 | 31.33 | primary | birds |
| 840 | GCF_963924675.1 | GCF_963924675.1_mPhoPho1.1 | Phocoena phocoena | harbor porpoise (primary hap 2024 refseq) | 9742 | SAMEA111380536 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Jan 2024 | WELLCOME SANGER INSTITUTE | 2,512,713,112 | 39.88 | primary | mammals |
| 841 | GCF_963924715.1 | GCF_963924715.1_fThuThy2.1 | Thunnus thynnus | Atlantic bluefin tuna (primary hap 2024 refseq) | 8237 | SAMEA111406335 | haploid (principal pseudohaplotype of diploid) | Chromosome | 29 Jan 2024 | WELLCOME SANGER INSTITUTE | 799,047,066 | 33.12 | primary | fish |
| 842 | GCF_963930625.1 | GCF_963930625.1_mMunRee1.1 | Muntiacus reevesi | Reeves' muntjac (primary hap 2024) | 9886 | SAMEA110690972 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2024 | WELLCOME SANGER INSTITUTE | 2,656,168,540 | 41.12 | primary | mammals |
| 843 | GCF_963930695.1 | GCF_963930695.1_fLabBer1.1 | Labrus bergylta | ballan wrasse (primary hap 2024 refseq) | 56723 | SAMEA111562158 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Jan 2024 | WELLCOME SANGER INSTITUTE | 720,210,020 | 30.38 | primary | fish |
| 844 | GCF_963932015.1 | GCF_963932015.1_bAnaAcu1.1 | Anas acuta | northern pintail (primary hap 2024 refseq) | 28680 | SAMEA112468036 | haploid (principal pseudohaplotype of diploid) | Chromosome | 07 Feb 2024 | WELLCOME SANGER INSTITUTE | 1,189,296,988 | 15.77 | primary | birds |
| 845 | GCF_964237555.1 | GCF_964237555.1_mOryCun1.1 | Oryctolagus cuniculus | rabbit (primary hap 2024 refseq) | 9986 | SAMEA112468037 | haploid (principal pseudohaplotype of diploid) | Chromosome | 31 Aug 2024 | WELLCOME SANGER INSTITUTE | 2,804,657,419 | 41.73 | primary | mammals |