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| hub gateway | description |
|---|---|
| primates | NCBI primate genomes (214 assemblies) |
| mammals | NCBI mammal genomes (538 assemblies) |
| birds | NCBI bird genomes (358 assemblies) |
| fishes | NCBI fish genomes (391 assemblies) |
| vertebrate | NCBI other vertebrate genomes (222 assemblies) |
| invertebrate | NCBI invertebrate genomes (723 assemblies) |
| fungi | NCBI fungi genomes (680 assemblies) |
| plants | NCBI plant genomes (301 assemblies) |
| viral | NCBI virus genomes (281 assemblies) |
| bacteria | NCBI bacteria genomes (103 assemblies) |
| collections below are subsets of the assemblies above | |
| VGP | Vertebrate Genomes Project collection (880 assemblies) |
| CCGP | The California Conservation Genomics Project (126 assemblies) |
| HPRC | Human Pangenome Reference Consortium (96 assemblies) |
| globalReference | Global Human Reference genomes, January 2020 (10 assemblies) |
| mouseStrains | 16 mouse strain assembly and track hub, May 2017 |
| legacy | NCBI genomes legacy/superseded by newer versions (449 assemblies) |
Please note: text file listing of 4262 genome assembly hubs
Please note, the invertebrate category contains more than just invertebrate animals. Until these clades are sorted out, with extra categories created, you will also find parasites, protozoa, and other single celled eukaryotes in the invertebrate grouping.
Please use the Assembly Request page to find and request GenBank assemblies that have not yet been included in the collections here.
To reference these resources in publications, please credit:
Clawson, H., Lee, B.T., Raney, B.J. et al.
GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023).
https://doi.org/10.1186/s13059-023-03057-x