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HPRC - Human Pangenome Reference Consortium assembly hub
This assembly hub contains assemblies released by the Human Pangenome Reference Consortium.
How to view the hub
Options:
- The links to the genome browser in the table below will attach that
one specific assembly to the genome browser. This is most likely what
you want. Alternatively, the entire set of assemblies can be attached
as one group to the genome browser with the following links depending
upon which of our mirror site browsers you prefer to use:
attach all assemblies to selected site: genome.ucsc.edu genome-euro.ucsc.edu genome-asia.ucsc.edu - To manually attach all the assemblies in this hub to genome browsers
that are not one of the three UCSC mirror sites:
- From the blue navigation bar, go to My Data -> Track Hubs
- Then select the My Hubs tab and enter this URL into
the textbox:
https://hgdownload.soe.ucsc.edu/hubs/HPRC/hub.txt - Once you have added the URL to the entry form, press the Add Hub button to add the hub.
After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the HPRC Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.
See also: assembly statistics, track statistics <== additional information for these assemblies.
Data resource links
NOTE: Click on the column headers to sort the table by that columnThe common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
| Additional hubs with collections of assemblies | |||
|---|---|---|---|
| Collection | Hub index pages: | Assembly statistics: | Track statistics: |
| Primates | 158 assemblies | assembly stats | track stats |
| Mammals | 403 assemblies | assembly stats | track stats |
| Birds | 270 assemblies | assembly stats | track stats |
| Fishes | 269 assemblies | assembly stats | track stats |
| other vertebrates | 113 assemblies | assembly stats | track stats |
| Invertebrates | 530 assemblies | assembly stats | track stats |
| Plants | 229 assemblies | assembly stats | track stats |
| Fungi | 544 assemblies | assembly stats | track stats |
| Viruses | 256 assemblies | assembly stats | track stats |
| Bacteria | 64 assemblies | assembly stats | track stats |
| legacy/superseded | 321 assemblies | assembly stats | track stats |
| collections below are subsets of the assemblies above | |||
| VGP - Vertebrate Genome Project | 446 assemblies | assembly stats | track stats |
| CCGP - The California Conservation Genomics Project | 126 assemblies | assembly stats | track stats |
| HPRC - Human Pangenome Reference Consortium | 96 assemblies | assembly stats | track stats |