Birds Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of birds only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Adelie penguin Pygoscelis adeliae GCF_000699105.1_ASM69910v1 19,265 1,216,617,519 95,110 54,157,596 18.32
2 American crow Corvus brachyrhynchos GCF_000691975.1_ASM69197v1 10,547 1,091,312,783 79,099 39,530,922 18.46
3 Anna's hummingbird Calypte anna GCF_003957555.1_bCalAnn1_v1.p 159 1,059,687,259 429 16,096,788 20.87
4 bald eagle Haliaeetus leucocephalus GCF_000737465.1_Haliaeetus_leucocephalus-4.0 1,023 1,178,409,481 30,862 19,163,137 18.49
5 bar-tailed trogon Apaloderma vittatum GCF_000703405.1_ASM70340v1 54,728 1,070,836,417 50,921 4,539,803 19.89
6 Barn owl Tyto alba GCF_000687205.1_ASM68720v1 62,122 1,120,143,088 109,223 8,845,233 18.44
7 birds Nothoprocta perdicaria GCF_003342845.1_notPer1 2,217 965,904,370 1,226,739 13,445,596 19.59
8 birds Camarhynchus parvulus GCF_901933205.1_STF_HiC 1,345 1,051,609,828 185 92,500 22.09
9 blue tit Cyanistes caeruleus GCF_002901205.1_cyaCae2 29,297 1,186,980,630 24,797 88,067,852 18.90
10 blue-crowned manakin Lepidothrix coronata GCF_001604755.1_Lepidothrix_coronata-1.0 4,612 1,079,577,334 22,456 22,384,553 19.20
11 brown roatelo Mesitornis unicolor GCF_000695765.1_ASM69576v1 67,520 1,087,290,853 51,602 3,812,826 19.42
12 budgerigar Melopsittacus undulatus GCF_000238935.1_Melopsittacus_undulatus_6.3 25,212 1,117,373,619 51,022 30,758,804 19.08
13 burrowing owl Athene cunicularia GCF_003259725.1_athCun1 445 1,157,069,330 33,737 12,642,846 19.37
14 carmine bee-eater Merops nubicus GCF_000691845.1_ASM69184v1 53,499 1,062,961,556 50,632 4,452,950 19.28
15 chicken Gallus gallus GCF_000002315.6_GRCg6a 464 1,065,365,434 952 9,784,466 21.22
16 chimney swift Chaetura pelagica GCF_000747805.1_ChaPel_1.0 19,072 1,119,188,094 65,523 45,064,234 19.72
17 chuck-will's-widow Antrostomus carolinensis GCF_000700745.1_ASM70074v1 70,122 1,119,683,066 56,667 4,405,452 20.50
18 collared flycatcher Ficedula albicollis GCF_000247815.1_FicAlb1.5 21,428 1,118,343,587 11,403 16,019,705 23.69
19 Common canary Serinus canaria GCF_007115625.1_cibio_Scana_2019 3,536 1,071,655,231 47,138 19,392,432 19.62
20 common cuckoo Cuculus canorus GCF_000709325.1_ASM70932v1 14,930 1,153,894,225 56,977 27,473,416 19.87
21 Common starling Sturnus vulgaris GCF_001447265.1_Sturnus_vulgaris-1.0 2,361 1,036,755,994 23,392 23,939,528 19.54
22 crested ibis Nipponia nippon GCF_000708225.1_ASM70822v1 59,555 1,223,863,029 70,475 34,415,453 18.70
23 cuckoo roller Leptosomus discolor GCF_000691785.1_ASM69178v1 57,160 1,136,244,952 56,010 3,108,826 18.48
24 Dalmatian pelican Pelecanus crispus GCF_000687375.1_ASM68737v1 63,982 1,160,924,693 57,580 4,215,933 19.54
25 Downy woodpecker Picoides pubescens GCF_000699005.1_ASM69900v1 31,254 1,167,323,935 96,471 43,403,938 27.85
26 emperor penguin Aptenodytes forsteri GCF_000699145.1_ASM69914v1 10,672 1,254,347,440 72,501 71,806,784 17.97
27 emu Dromaius novaehollandiae GCF_003342905.1_droNov1 2,778 1,192,254,075 1,408,082 13,197,674 17.61
28 golden-collared manakin Manacus vitellinus GCF_001715985.3_ASM171598v3 3,619 1,072,328,541 20,874 27,517,864 18.53
29 great cormorant Phalacrocorax carbo GCF_000708925.1_ASM70892v1 64,312 1,138,967,842 98,475 8,762,664 18.08
30 Great Tit Parus major GCF_001522545.3_Parus_major1.1 1,675 1,020,310,769 24,615 18,002,180 19.16
31 helmeted guineafowl Numida meleagris GCF_002078875.1_NumMel1.0 2,466 1,043,264,150 15,598 20,122,429 20.22
32 hoatzin Opisthocomus hoazin GCF_000692075.1_ASM69207v1 10,256 1,203,712,246 99,371 61,546,379 18.74
33 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 2,012 927,656,957 11,601 10,397,704 19.88
34 Kakapo Strigops habroptila GCF_004027225.1_bStrHab1_v1.p 99 1,165,621,973 362 27,568,509 20.23
35 Kea Nestor notabilis GCF_000696875.1_ASM69687v1 42,180 1,053,559,886 51,381 4,379,260 18.08
36 killdeer Charadrius vociferus GCF_000708025.1_ASM70802v2 15,167 1,219,859,583 63,995 33,912,801 19.46
37 little egret Egretta garzetta GCF_000687185.1_ASM68718v1 11,791 1,206,501,934 88,871 48,695,403 19.00
38 Macqueen's bustard Chlamydotis macqueenii GCF_000695195.1_ASM69519v1 59,693 1,086,566,339 56,130 3,604,992 20.04
39 mallard Anas platyrhynchos GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 2,150 1,126,176,092 71,703 2,915,825 21.95
40 medium ground-finch Geospiza fortis GCF_000277835.1_GeoFor_1.0 27,239 1,065,292,181 68,589 24,006,152 19.54
41 Northern fulmar Fulmarus glacialis GCF_000690835.1_ASM69083v1 57,389 1,141,395,646 54,825 5,766,974 18.44
42 Okarito brown kiwi Apteryx rowi GCF_003343035.1_aptRow1 4,120 1,228,902,913 696,987 19,303,568 18.35
43 peregrine falcon Falco peregrinus GCF_000337955.1_F_peregrinus_v1.0 7,021 1,171,973,431 76,069 18,569,083 18.40
44 red-crested turaco Tauraco erythrolophus GCF_000709365.1_ASM70936v1 59,587 1,155,540,733 75,085 6,806,072 20.46
45 Red-legged seriema Cariama cristata GCF_000690535.1_ASM69053v1 53,474 1,132,245,425 59,230 4,299,662 18.26
46 red-throated loon Gavia stellata GCF_000690875.1_ASM69087v1 61,831 1,129,694,867 64,882 6,867,421 18.23
47 rifleman Acanthisitta chloris GCF_000695815.1_ASM69581v1 53,875 1,035,876,403 66,437 4,778,007 18.37
48 Ring-necked pheasant Phasianus colchicus GCF_004143745.1_ASM414374v1 39,678 1,017,524,032 19,995 7,944,423 20.84
49 rock pigeon Columba livia GCF_000337935.1_Cliv_1.0 14,923 1,107,989,085 85,176 21,063,210 19.45
50 ruff Calidris pugnax GCF_001431845.1_ASM143184v1 3,753 1,229,094,286 30,404 46,140,523 20.49
51 saffron-crested tyrant-manakin Neopelma chrysocephalum GCF_003984885.1_ASM398488v2 38,089 1,139,224,170 15,342 11,277,790 20.91
52 Saker falcon Falco cherrug GCF_000337975.1_F_cherrug_v1.0 5,863 1,174,811,715 70,035 23,817,946 18.25
53 speckled mousebird Colius striatus GCF_000690715.1_ASM69071v1 70,188 1,075,931,597 44,462 3,761,058 19.44
54 sunbittern Eurypyga helias GCF_000690775.1_ASM69077v1 62,699 1,088,019,637 52,471 4,990,991 18.84
55 Tibetan ground-tit Pseudopodoces humilis GCF_000331425.1_PseHum1.0 5,406 1,042,997,632 21,646 12,967,196 19.96
56 turkey Meleagris gallopavo GCF_000146605.3_Turkey_5.1 185,175 1,115,474,681 65,045 35,294,427 21.11
57 White-ruffed manakin Corapipo altera GCF_003945725.1_ASM394572v1 9,068 1,095,745,976 13,527 8,367,350 19.82
58 white-tailed eagle Haliaeetus albicilla GCF_000691405.1_ASM69140v1 50,905 1,133,549,865 60,579 5,093,567 18.15
59 White-tailed tropicbird Phaethon lepturus GCF_000687285.1_ASM68728v1 66,785 1,152,958,507 65,286 5,878,041 19.61
60 white-throated sparrow Zonotrichia albicollis GCF_000385455.1_Zonotrichia_albicollis-1.0.1 6,018 1,052,600,561 41,460 46,307,051 19.15
61 white-throated tinamou Tinamus guttatus GCF_000705375.1_ASM70537v2 82,514 1,047,056,493 59,853 22,243,067 18.98
62 willow flycatcher Empidonax traillii GCF_003031625.1_ASM303162v1 7,791 1,123,485,537 39,319 52,589,169 18.90
63 Wire-tailed manakin Pipra filicauda GCF_003945595.1_ASM394559v1 3,744 1,110,963,465 102 38,956 20.58
64 yellow-throated sandgrouse Pterocles gutturalis GCF_000699245.1_ASM69924v1 58,607 1,069,324,295 48,553 3,605,558 19.26
65 zebra finch Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
TOTALS:total assembly count 65 1,940,602 72,425,829,400 6,348,632 1,305,756,769  

Additional hubs with collections of assemblies
Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates