| 1 |
Abyssinian ground-hornbill (2019) |
Bucorvus abyssinicus |
GCA_009769605.1_bBucAby1.pri |
112 |
1,132,597,561 |
204 |
8,074,542 |
19.24 |
| 2 |
Abyssinian ground-hornbill (alternate hap 2019) |
Bucorvus abyssinicus |
GCA_009769595.1_bBucAby1.alt |
3,527 |
1,024,138,499 |
0 |
0 |
18.52 |
| 3 |
acorn woodpecker (bairdi alternate hap 2022) |
Melanerpes formicivorus |
GCA_026170555.1_bMelFor1.0.a |
2,294 |
1,438,781,011 |
1,555 |
155,500 |
43.03 |
| 4 |
acorn woodpecker (bairdi primary hap 2022) |
Melanerpes formicivorus |
GCA_026170545.1_bMelFor1.0.p |
3,174 |
1,323,584,679 |
1,317 |
131,700 |
42.41 |
| 5 |
Adelie penguin |
Pygoscelis adeliae |
GCF_000699105.1_ASM69910v1 |
19,265 |
1,216,617,519 |
95,110 |
54,157,596 |
18.32 |
| 6 |
African ostrich |
Struthio camelus australis |
GCF_000698965.1_ASM69896v1 |
6,915 |
1,225,041,896 |
72,649 |
40,253,160 |
17.81 |
| 7 |
American crow |
Corvus brachyrhynchos |
GCF_000691975.1_ASM69197v1 |
10,547 |
1,091,312,783 |
79,099 |
39,530,922 |
18.46 |
| 8 |
American flamingo (2019) |
Phoenicopterus ruber ruber |
GCA_009819775.1_bPhoRub2.pri |
90 |
1,246,226,932 |
280 |
8,602,116 |
20.94 |
| 9 |
American flamingo (alternate hap 2019) |
Phoenicopterus ruber ruber |
GCA_009819805.1_bPhoRub2.alt |
3,529 |
1,167,509,893 |
0 |
0 |
20.15 |
| 10 |
Anna's hummingbird (alternate hap BGI_N300 2018) |
Calypte anna |
GCA_003957575.1_bCalAnn1_v1.h |
3,803 |
952,083,371 |
6 |
2,998 |
20.33 |
| 11 |
Anna's hummingbird (BGI_N300 2019 refseq) |
Calypte anna |
GCF_003957555.1_bCalAnn1_v1.p |
159 |
1,059,687,259 |
429 |
16,096,788 |
20.87 |
| 12 |
bald eagle |
Haliaeetus leucocephalus |
GCF_000737465.1_Haliaeetus_leucocephalus-4.0 |
1,023 |
1,178,409,481 |
30,862 |
19,163,137 |
18.49 |
| 13 |
bar-tailed trogon |
Apaloderma vittatum |
GCF_000703405.1_ASM70340v1 |
54,728 |
1,070,836,417 |
50,921 |
4,539,803 |
19.89 |
| 14 |
barn owl (U. Lausanne 2021) |
Tyto alba |
GCF_018691265.1_T.alba_DEE_v4.0 |
70 |
1,249,867,532 |
259 |
51,418,967 |
19.01 |
| 15 |
Barn swallow (bHirRus1 v3 alternate hap 2021) |
Hirundo rustica |
GCA_015227815.3_bHirRus1.alt.v3 |
2,476 |
936,032,861 |
6 |
1,226 |
20.47 |
| 16 |
Barn swallow (bHirRus1 v3 primary hap 2021 refseq) |
Hirundo rustica |
GCF_015227805.2_bHirRus1.pri.v3 |
617 |
1,105,955,550 |
1,102 |
25,534,411 |
21.06 |
| 17 |
Bengalese finch |
Lonchura striata domestica |
GCF_005870125.1_lonStrDom2 |
2,015 |
1,060,269,806 |
37,862 |
31,260,240 |
20.10 |
| 18 |
black-capped chickadee (hap1 2023) |
Poecile atricapillus |
GCF_030490865.1_bPoeAtr1.hap1 |
307 |
1,251,133,642 |
404 |
958,949 |
24.42 |
| 19 |
black-capped chickadee (hap2 2023) |
Poecile atricapillus |
GCA_030490855.1_bPoeAtr1.hap2 |
157 |
987,998,379 |
240 |
590,213 |
23.49 |
| 20 |
black-headed gull (Kunming 2023) |
Chroicocephalus ridibundus |
GCA_030820635.1_KIZ_Lrid_1.0 |
297 |
1,243,762,172 |
149 |
14,900 |
23.13 |
| 21 |
black-headed gull (primary hap 2024) |
Chroicocephalus ridibundus |
GCA_963924245.1_bChrRid1.1 |
729 |
1,417,571,123 |
462 |
92,400 |
31.33 |
| 22 |
black-legged kittiwake (bRisTri1 2023 refseq) |
Rissa tridactyla |
GCF_028500815.1_bRisTri1.patW.cur.20221130 |
716 |
1,353,621,101 |
283 |
786,373 |
26.72 |
| 23 |
black-legged kittiwake (bRisTri1.mat 2023) |
Rissa tridactyla |
GCA_028501385.1_bRisTri1.mat.cur.20221130 |
733 |
1,268,441,171 |
223 |
639,872 |
27.28 |
| 24 |
blackcap (2019) |
Sylvia atricapilla |
GCA_009819655.1_bSylAtr1.pri |
189 |
1,066,786,587 |
413 |
11,925,354 |
19.80 |
| 25 |
blackcap (alternate hap 2019) |
Sylvia atricapilla |
GCA_009819715.1_bSylAtr1.alt |
3,566 |
991,486,332 |
2 |
600 |
19.69 |
| 26 |
black swan (v2 Queensland, Australia AKBS03 2022) |
Cygnus atratus |
GCF_013377495.2_CAtr_DNAZoo_HiC_assembly |
568 |
1,124,233,768 |
130 |
65,000 |
21.50 |
| 27 |
black-throated flowerpiercer |
Diglossa brunneiventris |
GCA_019023105.1_LSU_DiBr_2.0 |
600 |
1,079,473,785 |
970 |
85,047 |
20.78 |
| 28 |
blue tit |
Cyanistes caeruleus |
GCF_002901205.1_cyaCae2 |
29,297 |
1,186,980,630 |
24,797 |
88,067,852 |
18.90 |
| 29 |
blue-and-yellow macaw (hap1 2023) |
Ara ararauna |
GCA_028858755.1_bAraAra1.hap1 |
246 |
1,224,360,198 |
107 |
988,129 |
24.87 |
| 30 |
blue-and-yellow macaw (hap2 2023) |
Ara ararauna |
GCA_028858555.1_bAraAra1.hap2 |
274 |
1,302,242,811 |
130 |
1,106,509 |
28.73 |
| 31 |
blue-crowned manakin |
Lepidothrix coronata |
GCF_001604755.1_Lepidothrix_coronata-1.0 |
4,612 |
1,079,577,334 |
22,456 |
22,384,553 |
19.20 |
| 32 |
blue-fronted amazon (AMXYW 2021) |
Amazona aestiva |
GCA_017639355.1_Aaes_hic |
1,498 |
1,130,393,257 |
3,560,856 |
78,205,203 |
17.92 |
| 33 |
blue-fronted amazon (FVVF132 2015) |
Amazona aestiva |
GCA_001420675.1_ASM142067v1 |
3,232 |
1,129,535,839 |
3,559,082 |
77,331,237 |
17.93 |
| 34 |
brown eared-pheasant |
Crossoptilon mantchuricum |
GCA_019593555.1_cma1 |
2,408 |
1,013,441,081 |
114,232 |
13,649,759 |
20.28 |
| 35 |
brown headed cowbird (v1.1 BHLD 08-10-18 2022) |
Molothrus ater |
GCF_012460135.2_BPBGC_Mater_1.1 |
374 |
1,087,236,743 |
318 |
63,400 |
21.32 |
| 36 |
brown kiwi |
Apteryx mantelli mantelli |
GCF_001039765.1_AptMant0 |
24,718 |
1,523,969,783 |
368,297 |
212,971,013 |
14.69 |
| 37 |
brown roatelo |
Mesitornis unicolor |
GCF_000695765.1_ASM69576v1 |
67,520 |
1,087,290,853 |
51,602 |
3,812,826 |
19.42 |
| 38 |
budgerigar (v6.3 2021 WashU) |
Melopsittacus undulatus |
GCF_000238935.1_Melopsittacus_undulatus_6.3 |
25,212 |
1,117,373,619 |
51,022 |
30,758,804 |
19.08 |
| 39 |
budgerigar (maternal 2020) |
Melopsittacus undulatus |
GCA_012275265.1_bMelUnd1.mat |
930 |
1,169,393,027 |
388 |
67,787,495 |
20.82 |
| 40 |
budgerigar (maternal Z 2020 refseq) |
Melopsittacus undulatus |
GCF_012275295.1_bMelUnd1.mat.Z |
864 |
1,171,617,451 |
284 |
3,236,129 |
22.13 |
| 41 |
budgerigar (paternal 2020) |
Melopsittacus undulatus |
GCA_012275275.1_bMelUnd1.pat |
330 |
1,124,753,724 |
737 |
11,458,836 |
20.35 |
| 42 |
burrowing owl |
Athene cunicularia |
GCF_003259725.1_athCun1 |
445 |
1,157,069,330 |
33,737 |
12,642,846 |
19.37 |
| 43 |
California black rail (168171201 alternate hap 2022) |
Laterallus jamaicensis coturniculus |
GCA_022605925.1_bLatJam1.0.a |
3,563 |
1,211,372,722 |
1,672 |
167,200 |
30.43 |
| 44 |
California black rail (168171201 primary hap 2022) |
Laterallus jamaicensis coturniculus |
GCA_022605575.1_bLatJam1.0.p |
645 |
1,391,405,863 |
319 |
31,910 |
32.29 |
| 45 |
California condor (v2 813 2022 refseq) |
Gymnogyps californianus |
GCF_018139145.2_ASM1813914v2 |
542 |
1,240,248,578 |
632 |
316,000 |
20.33 |
| 46 |
California quail (MVZ:Bird:193975 alternate hap 2022) |
Callipepla californica brunnescens |
GCA_023055725.1_bCalCai1.0.a |
1,601 |
1,398,480,580 |
248 |
24,800 |
36.96 |
| 47 |
California quail (MVZ:Bird:193975 primary hap 2022) |
Callipepla californica brunnescens |
GCA_023055505.1_bCalCai1.0.p |
321 |
1,085,347,722 |
287 |
28,700 |
25.37 |
| 48 |
California towhee (CALT 2023) |
Melozone crissalis |
GCF_028551555.1_PUWL_Pcris_2 |
627 |
1,412,182,309 |
0 |
0 |
32.92 |
| 49 |
Canada goose (SJ_97 2019) |
Branta canadensis |
GCA_006130075.1_GSC_cangoose_1.0 |
14,079 |
1,151,349,954 |
15,389 |
18,827,118 |
21.30 |
| 50 |
carmine bee-eater alternate hap pseudohaplotype 2019) |
Merops nubicus |
GCA_009819585.1_bMerNub1.alt |
3,296 |
1,122,486,764 |
0 |
0 |
21.54 |
| 51 |
carmine bee-eater (2019) |
Merops nubicus |
GCA_009819595.1_bMerNub1.pri |
109 |
1,149,356,202 |
269 |
6,055,062 |
21.59 |
| 52 |
chaffinch (primary hap 2023) |
Fringilla coelebs |
GCA_963513975.1_bFriCoe1.1 |
460 |
1,209,243,761 |
573 |
114,600 |
28.43 |
| 53 |
chicken (GRCg6a 2018) |
Gallus gallus |
GCF_000002315.6_GRCg6a |
464 |
1,065,365,434 |
952 |
9,784,466 |
21.22 |
| 54 |
chicken (Cobb bGalGal5 alternate hap 2022) |
Gallus gallus |
GCA_027408205.1_bGalGal5.alt |
2,259 |
911,865,540 |
4 |
92 |
21.83 |
| 55 |
chicken (Cobb bGalGal5 primary hap 2022) |
Gallus gallus |
GCA_027408225.1_bGalGal5.pri |
252 |
1,109,044,877 |
460 |
2,157,079 |
24.72 |
| 56 |
chicken (Huxu 2023) |
Gallus gallus |
GCA_024206055.2_ASM2420605v2 |
41 |
1,100,928,095 |
14 |
5,572 |
23.58 |
| 57 |
chicken (Ross bGalGal4 alternate hap 2022) |
Gallus gallus |
GCA_027408255.1_bGalGal4.alt |
2,683 |
885,772,923 |
1 |
13 |
21.48 |
| 58 |
chicken (Ross bGalGal4 primary hap 2023) |
Gallus gallus |
GCA_027557775.1_bGalGal4.pri |
246 |
1,094,281,734 |
566 |
2,821,884 |
24.04 |
| 59 |
chicken white leghorn layer X broiler (leghorn haplotype v2 2021) |
Gallus gallus |
GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w |
276 |
1,050,511,239 |
409 |
4,496,311 |
20.97 |
| 60 |
chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021) |
Gallus gallus |
GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b |
214 |
1,053,332,251 |
463 |
3,383,918 |
21.35 |
| 61 |
Chilean tinamou |
Nothoprocta perdicaria |
GCF_003342845.1_notPer1 |
2,217 |
965,904,370 |
1,226,739 |
13,445,596 |
19.59 |
| 62 |
chimney swift (M959 v1.1 2014) |
Chaetura pelagica |
GCF_000747805.2_ChaPel_1.1 |
18,703 |
1,118,724,105 |
65,471 |
44,958,635 |
19.72 |
| 63 |
chuck-will's-widow (BGI_N321 v2 2014) |
Antrostomus carolinensis |
GCF_000700745.2_ASM70074v2 |
68,881 |
1,118,829,799 |
56,333 |
4,349,714 |
20.50 |
| 64 |
collared flycatcher |
Ficedula albicollis |
GCF_000247815.1_FicAlb1.5 |
21,428 |
1,118,343,587 |
11,403 |
16,019,705 |
23.69 |
| 65 |
common canary (domestic yellow sc_yellow_7_cibi 2019) |
Serinus canaria |
GCF_007115625.1_cibio_Scana_2019 |
3,536 |
1,071,655,231 |
47,138 |
19,392,432 |
19.62 |
| 66 |
common canary (serCan28SL12 2022) |
Serinus canaria |
GCF_022539315.1_serCan2020 |
685 |
1,050,352,878 |
1,055 |
527,001 |
20.52 |
| 67 |
common cuckoo (bCucCan1 alternate hap 2021) |
Cuculus canorus |
GCA_017976305.1_bCucCan1.alt |
1,004 |
1,063,845,602 |
8 |
1,739 |
21.42 |
| 68 |
common cuckoo (bCucCan1 primary hap 2021 refseq) |
Cuculus canorus |
GCF_017976375.1_bCucCan1.pri |
150 |
1,180,136,575 |
296 |
4,922,315 |
21.81 |
| 69 |
common myna (bArcTri1 alternate hap 2023) |
Acridotheres tristis |
GCA_027559525.1_bAcrTri1.alt |
2,221 |
969,356,965 |
1 |
500 |
25.11 |
| 70 |
common myna (bArcTri1 primary hap 2023) |
Acridotheres tristis |
GCA_027559615.1_bAcrTri1.pri |
455 |
1,193,419,045 |
435 |
2,422,523 |
28.14 |
| 71 |
common starling |
Sturnus vulgaris |
GCF_001447265.1_Sturnus_vulgaris-1.0 |
2,361 |
1,036,755,994 |
23,392 |
23,939,528 |
19.54 |
| 72 |
common swift (bApuApu2 alternate hap 2021) |
Apus apus |
GCA_020740585.1_bApuApu2.alt.cur |
1,697 |
1,019,504,970 |
5 |
105 |
20.89 |
| 73 |
common swift (bApuApu2 primary hap 2021 refseq) |
Apus apus |
GCF_020740795.1_bApuApu2.pri.cur |
110 |
1,100,378,261 |
256 |
1,747,529 |
21.21 |
| 74 |
common tern (alternate hap 2019) |
Sterna hirundo |
GCA_009819645.1_bSteHir1.alt |
2,235 |
1,175,438,911 |
0 |
0 |
20.72 |
| 75 |
common tern (2019) |
Sterna hirundo |
GCA_009819605.1_bSteHir1.pri |
123 |
1,229,972,541 |
205 |
10,364,610 |
21.00 |
| 76 |
common yellowthroat (alternate hap 2019) |
Geothlypis trichas |
GCA_009764545.1_bGeoTri1.alt |
4,976 |
976,433,058 |
1 |
32 |
19.80 |
| 77 |
common yellowthroat (2019) |
Geothlypis trichas |
GCA_009764595.1_bGeoTri1.pri |
278 |
1,078,128,490 |
1,479 |
13,697,790 |
20.48 |
| 78 |
crested ibis (BGI_Y956 2014) |
Nipponia nippon |
GCF_000708225.1_ASM70822v1 |
59,555 |
1,223,863,029 |
70,475 |
34,415,453 |
18.70 |
| 79 |
cuckoo roller (BGI_N330 2014) |
Leptosomus discolor |
GCF_000691785.1_ASM69178v1 |
57,160 |
1,136,244,952 |
56,010 |
3,108,826 |
18.48 |
| 80 |
cuckoo roller (hap1 2023) |
Leptosomus discolor |
GCA_034619455.1_bLepDis1.hap1 |
335 |
1,327,905,210 |
290 |
58,000 |
24.00 |
| 81 |
cuckoo roller (hap2 2023) |
Leptosomus discolor |
GCA_034619465.1_bLepDis1.hap2 |
278 |
1,332,047,658 |
271 |
54,200 |
25.12 |
| 82 |
Dalmatian pelican (BGI_N334 2014) |
Pelecanus crispus |
GCF_000687375.1_ASM68737v1 |
63,982 |
1,160,924,693 |
57,580 |
4,215,933 |
19.54 |
| 83 |
Dalmatian pelican (alternate hap 2023) |
Pelecanus crispus |
GCA_030449815.1_bPelCri1.alt |
7,284 |
1,207,417,857 |
0 |
0 |
23.23 |
| 84 |
Dalmatian pelican (primary hap 2023) |
Pelecanus crispus |
GCA_030463565.1_bPelCri1.pri |
311 |
1,314,587,946 |
390 |
78,000 |
24.65 |
| 85 |
Downy woodpecker (alternate hap 2020) |
Dryobates pubescens |
GCA_014839825.1_bDryPub1.alt |
1,342 |
1,082,594,729 |
4 |
226 |
31.30 |
| 86 |
Downy woodpecker (primary hap 2020) |
Dryobates pubescens |
GCF_014839835.1_bDryPub1.pri |
180 |
1,187,939,694 |
187 |
4,003,130 |
32.06 |
| 87 |
East African grey crowned-crane |
Balearica regulorum gibbericeps |
GCF_000709895.1_ASM70989v1 |
53,491 |
1,127,622,302 |
58,359 |
4,094,603 |
18.87 |
| 88 |
East African grey crowned-crane (alternate hap 2020) |
Balearica regulorum gibbericeps |
GCA_011004865.1_bBalReg1.alt |
971 |
1,042,364,165 |
4 |
539 |
20.18 |
| 89 |
East African grey crowned-crane (bBalReg1 2020) |
Balearica regulorum gibbericeps |
GCA_011004875.1_bBalReg1.pri |
105 |
1,221,051,782 |
144 |
4,796,037 |
21.20 |
| 90 |
Eastern black-eared wheatear (GR-GAL-2019-014 2023) |
Oenanthe melanoleuca |
GCF_029582105.1_OMel1.0 |
587 |
1,036,256,795 |
582 |
58,200 |
20.82 |
| 91 |
emperor penguin |
Aptenodytes forsteri |
GCF_000699145.1_ASM69914v1 |
10,672 |
1,254,347,440 |
72,501 |
71,806,784 |
17.97 |
| 92 |
emu (v2 ZJU1.0 2023) |
Dromaius novaehollandiae |
GCA_016128335.2_ZJU2.0 |
767 |
1,247,435,561 |
539 |
72,443 |
19.18 |
| 93 |
emu (2018) |
Dromaius novaehollandiae |
GCF_003342905.1_droNov1 |
2,778 |
1,192,254,075 |
1,408,082 |
13,197,674 |
17.61 |
| 94 |
Eurasian nightjar (alternate hap 2021) |
Caprimulgus europaeus |
GCA_907165095.1_bCapEur3.1_alternate_haplotype |
2,502 |
1,051,868,380 |
25 |
3,300 |
21.18 |
| 95 |
Eurasian nightjar (primary hap 2021) |
Caprimulgus europaeus |
GCA_907165065.1_bCapEur3.1 |
121 |
1,177,791,212 |
153 |
25,835 |
22.20 |
| 96 |
Eurasian tree sparrow |
Passer montanus |
GCF_014805655.1_ASM1480565v1 |
18,975 |
1,039,966,254 |
4,765 |
1,888,875 |
20.56 |
| 97 |
Eurpoean golden plover (bPluApr1 alternate hap 2021) |
Pluvialis apricaria |
GCA_017639475.1_bPluApr1.alt |
1,147 |
1,085,787,090 |
5 |
552 |
20.74 |
| 98 |
European golden plover (bPluApr1 primary hap 2021) |
Pluvialis apricaria |
GCA_017639485.1_bPluApr1.pri |
107 |
1,247,767,512 |
268 |
12,294,737 |
21.20 |
| 99 |
European robin (alternate hap 2021) |
Erithacus rubecula |
GCA_903797565.2_bEriRub2.2_alternate_haplotype |
3,668 |
912,720,829 |
18 |
4,600 |
19.76 |
| 100 |
European robin (primary hap 2021) |
Erithacus rubecula |
GCA_903797595.2_bEriRub2.2 |
1,119 |
1,086,738,418 |
990 |
287,644 |
21.47 |
| 101 |
European shag (alternate hap 2023) |
Phalacrocorax aristotelis |
GCA_949628205.1_bGulAri2.1_alternate_haplotype |
9,751 |
1,080,507,657 |
1 |
17 |
21.58 |
| 102 |
European shag (primary hap 2023) |
Phalacrocorax aristotelis |
GCA_949628215.1_bGulAri2.1 |
353 |
1,279,134,750 |
222 |
44,217 |
22.81 |
| 103 |
European turtle dove (v1.2 alternate hap 2021) |
Streptopelia turtur |
GCA_901699165.2_bStrTur1.2_alternate_haplotype |
3,334 |
1,035,330,184 |
0 |
0 |
20.26 |
| 104 |
European turtle dove (v1.2 2021) |
Streptopelia turtur |
GCA_901699155.2_bStrTur1.2 |
311 |
1,178,816,852 |
940 |
3,880,574 |
21.07 |
| 105 |
garden warbler (bSylBor1 alternate hap 2020) |
Sylvia borin |
GCA_014839765.1_bSylBor1.alt |
775 |
1,032,649,170 |
0 |
0 |
19.91 |
| 106 |
garden warbler (bSylBor1 primary hap 2020) |
Sylvia borin |
GCA_014839755.1_bSylBor1.pri |
176 |
1,045,652,180 |
134 |
1,835,448 |
20.28 |
| 107 |
golden-collared manakin |
Manacus vitellinus |
GCF_001715985.3_ASM171598v3 |
3,619 |
1,072,328,541 |
20,874 |
27,517,864 |
18.53 |
| 108 |
golden eagle (v1.4 alternate hap 2021) |
Aquila chrysaetos chrysaetos |
GCA_902153765.2_bAquChr1.4_alternate_haplotype |
3,855 |
792,810,001 |
2 |
57 |
18.35 |
| 109 |
golden eagle (v1.4 2021) |
Aquila chrysaetos chrysaetos |
GCF_900496995.4_bAquChr1.4 |
144 |
1,233,704,830 |
228 |
5,201,260 |
20.02 |
| 110 |
golden pheasant |
Chrysolophus pictus |
GCA_003413605.1_Chrysolophus_pictus_GenomeV1.0 |
14,294 |
1,023,990,748 |
51,170 |
25,281,723 |
20.04 |
| 111 |
great cormorant (BGI_N336 2014) |
Phalacrocorax carbo |
GCF_000708925.1_ASM70892v1 |
64,312 |
1,138,967,842 |
98,475 |
8,762,664 |
18.08 |
| 112 |
great cormorant (primary hap 2024) |
Phalacrocorax carbo |
GCA_963921805.1_bPhaCar2.1 |
351 |
1,283,643,005 |
493 |
98,600 |
22.67 |
| 113 |
great potoo (bNycGra1 alternate hap 2020) |
Nyctibius grandis |
GCA_013368595.1_bNycGra1.alt |
1,395 |
1,041,284,291 |
14 |
2,599 |
22.77 |
| 114 |
great potoo (bNycGra1 primary hap 2020) |
Nyctibius grandis |
GCA_013368605.1_bNycGra1.pri |
191 |
1,256,414,880 |
243 |
6,139,133 |
23.97 |
| 115 |
great tit |
Parus major |
GCF_001522545.3_Parus_major1.1 |
1,675 |
1,020,310,769 |
24,615 |
18,002,180 |
19.16 |
| 116 |
greater honeyguide (239-I01 2023) |
Indicator indicator |
GCF_027791375.1_UM_Iind_1.1 |
896 |
1,147,325,966 |
556 |
55,478 |
28.36 |
| 117 |
greater prairie chicken |
Tympanuchus cupido pinnatus |
GCA_001870855.1_T_cupido_pinnatus_GPC_3440_v1 |
12,186 |
983,776,544 |
48,408 |
3,857,299 |
19.91 |
| 118 |
greater rhea |
Rhea americana |
GCA_003343005.1_rheAme1 |
2,162 |
1,160,836,514 |
2,075,293 |
16,267,005 |
18.71 |
| 119 |
greater sage-grouse |
Centrocercus urophasianus |
GCF_019232065.1_USGS_Curo_1.0 |
1,502 |
1,010,657,860 |
9,894 |
36,988,073 |
19.67 |
| 120 |
green peafowl |
Pavo muticus |
GCA_016647715.1_ASM1664771v1 |
2,446 |
1,061,110,005 |
32,668 |
19,660,955 |
20.61 |
| 121 |
grey parrot (MU2MI4XJKV 2020) |
Psittacus erithacus |
GCA_009867235.1_ASM986723v1 |
49,377 |
1,118,034,822 |
4,777 |
376,990 |
19.43 |
| 122 |
ground parrot (Strahan ANWC-B61680 2023) |
Pezoporus wallicus |
GCF_028554395.1_APGP_CSIRO_Pwel_v1 |
8,090 |
1,141,458,063 |
0 |
0 |
22.03 |
| 123 |
gyrfalcon (bFalRus1 alternate hap 2020) |
Falco rusticolus |
GCA_015220155.1_bFalRus1.alt |
8,370 |
516,243,243 |
0 |
0 |
16.87 |
| 124 |
gyrfalcon (bFalRus1 primary hap 2020) |
Falco rusticolus |
GCF_015220075.1_bFalRus1.pri |
133 |
1,195,847,496 |
635 |
5,345,814 |
18.84 |
| 125 |
Harpy eagle (bHarHar1 alternate hap 2022) |
Harpia harpyja |
GCA_026419925.1_bHarHar1 |
5,968 |
1,185,324,778 |
1 |
500 |
25.31 |
| 126 |
Harpy eagle (primary hap 2022 refseq) |
Harpia harpyja |
GCF_026419915.1_bHarHar1_primary_haplotype |
322 |
1,351,447,071 |
342 |
2,651,394 |
24.82 |
| 127 |
Hawaiian crow (bCorHaw1 alternate hap 2021) |
Corvus hawaiiensis |
GCA_020740675.1_bCorHaw1.alt.cur |
2,762 |
628,844,469 |
0 |
0 |
20.95 |
| 128 |
Hawaiian crow (bCorHaw1 primary hap 2021 refseq) |
Corvus hawaiiensis |
GCF_020740725.1_bCorHaw1.pri.cur |
188 |
1,151,611,379 |
294 |
1,813,227 |
23.63 |
| 129 |
helmeted guineafowl |
Numida meleagris |
GCF_002078875.1_NumMel1.0 |
2,466 |
1,043,264,150 |
15,598 |
20,122,429 |
20.22 |
| 130 |
hoatzin (BGI_N306 2014) |
Opisthocomus hoazin |
GCF_000692075.1_ASM69207v1 |
10,256 |
1,203,712,246 |
99,371 |
61,546,379 |
18.74 |
| 131 |
hoatzin (hap1 2023) |
Opisthocomus hoazin |
GCA_030867145.1_bOpiHoa1.hap1 |
415 |
1,482,459,898 |
268 |
53,600 |
31.68 |
| 132 |
hoatzin (hap2 2023) |
Opisthocomus hoazin |
GCA_030867165.1_bOpiHoa1.hap2 |
323 |
1,355,639,139 |
212 |
42,400 |
31.88 |
| 133 |
hooded crow (v6 S_Up_H32 2022) |
Corvus cornix cornix |
GCF_000738735.6_ASM73873v6 |
47 |
1,030,881,721 |
425 |
3,256,893 |
19.03 |
| 134 |
house finch (bHaeMex1 alternate hap 2022) |
Haemorhous mexicanus |
GCA_027406555.1_bHaeMex1.alt |
1,003 |
1,039,351,984 |
1 |
13 |
22.74 |
| 135 |
house finch (bHaeMex1 primary hap 2022 refseq) |
Haemorhous mexicanus |
GCF_027477595.1_bHaeMex1.pri |
184 |
1,148,233,018 |
296 |
11,207,146 |
23.53 |
| 136 |
house sparrow (hap1 2024) |
Passer domesticus |
GCA_036417665.1_bPasDom1.hap1 |
334 |
1,310,114,252 |
202 |
40,400 |
30.41 |
| 137 |
House sparrow (hap2 2024) |
Passer domesticus |
GCA_036417895.1_bPasDom1.hap2 |
482 |
1,260,479,385 |
182 |
36,400 |
31.98 |
| 138 |
Humboldt's penguin (bSphHub1 alternate hap 2022) |
Spheniscus humboldti |
GCA_027474345.1_bSphHub1.alt |
4,342 |
1,159,977,626 |
1 |
77 |
24.68 |
| 139 |
Humboldt's penguin (bSphHub1 primary hap 2022) |
Spheniscus humboldti |
GCA_027474245.1_bSphHub1.pri |
136 |
1,358,357,718 |
253 |
1,055,061 |
25.75 |
| 140 |
hyacinth macaw (LEKZKR9XQ3 2022) |
Anodorhynchus hyacinthinus |
GCA_009936445.2_ASM993644v2 |
259,731 |
1,105,970,561 |
1,098 |
45,810 |
20.26 |
| 141 |
jackdaw |
Coloeus monedula |
GCA_013407035.1_ASM1340703v1 |
41 |
1,035,863,955 |
511 |
2,904,377 |
19.28 |
| 142 |
Japanese quail |
Coturnix japonica |
GCF_001577835.2_Coturnix_japonica_2.1 |
2,012 |
927,656,957 |
11,601 |
10,397,704 |
19.88 |
| 143 |
kagu (bRhyJub1 alternate hap 2023) |
Rhynochetos jubatus |
GCA_027595965.1_bRhyJub1.alt |
2,818 |
791,426,973 |
1 |
32 |
25.70 |
| 144 |
kagu (bRhyJub1 primary hap 2023) |
Rhynochetos jubatus |
GCA_027574665.1_bRhyJub1.pri |
148 |
1,331,454,348 |
300 |
525,241 |
28.26 |
| 145 |
kakapo (Jane alternate hap 2019) |
Strigops habroptila |
GCA_004011185.1_bStrHab1_v1.h |
3,728 |
285,706,558 |
11 |
5,465 |
18.11 |
| 146 |
kakapo (Jane v2 2020 refseq) |
Strigops habroptila |
GCF_004027225.2_bStrHab1.2.pri |
89 |
1,148,597,545 |
373 |
10,544,081 |
20.53 |
| 147 |
kea |
Nestor notabilis |
GCF_000696875.1_ASM69687v1 |
42,180 |
1,053,559,886 |
51,381 |
4,379,260 |
18.08 |
| 148 |
killdeer |
Charadrius vociferus |
GCF_000708025.1_ASM70802v2 |
15,167 |
1,219,859,583 |
63,995 |
33,912,801 |
19.46 |
| 149 |
lammergeier (bGypBar2 alternate hap 2023) |
Gypaetus barbatus |
GCA_028017155.1_bGypBar2.alt |
2,892 |
979,058,826 |
0 |
0 |
23.84 |
| 150 |
lammergeier (bGypBar2 primary hap 2023) |
Gypaetus barbatus |
GCA_028022735.1_bGypBar2.pri |
232 |
1,365,299,843 |
259 |
2,000,432 |
26.52 |
| 151 |
lance-tailed manakin (2020) |
Chiroxiphia lanceolata |
GCF_009829145.1_bChiLan1.pri |
93 |
1,089,631,598 |
206 |
3,303,511 |
20.07 |
| 152 |
lance-tailed manakin (alternate hap 2020) |
Chiroxiphia lanceolata |
GCA_009829205.1_bChiLan1.alt |
4,269 |
1,054,616,617 |
0 |
0 |
19.51 |
| 153 |
lanner falcon (bFalBia1 alternate hap 2022) |
Falco biarmicus |
GCA_023634305.1_bFalBia1.alt |
3,090 |
1,202,443,328 |
0 |
0 |
22.09 |
| 154 |
lanner falcon (bFalBia1 primary hap 2022 refseq) |
Falco biarmicus |
GCF_023638135.1_bFalBia1.pri |
397 |
1,285,492,283 |
158 |
2,152,808 |
23.59 |
| 155 |
lesser black-backed gull (primary hap 2024) |
Larus fuscus |
GCA_963932225.1_bLarFus1.1 |
1,367 |
1,324,286,540 |
537 |
107,415 |
27.18 |
| 156 |
lesser kestrel (alternate hap 2021) |
Falco naumanni |
GCA_017639645.1_bFalNau1.mat |
551 |
1,156,765,323 |
258 |
11,969,465 |
19.17 |
| 157 |
lesser kestrel (v2 2021) |
Falco naumanni |
GCF_017639655.2_bFalNau1.pat |
291 |
1,215,719,661 |
298 |
4,077,287 |
19.20 |
| 158 |
lesser prairie-chicken (F22 2022) |
Tympanuchus pallidicinctus |
GCF_026119805.1_pur_lepc_1.0 |
206 |
994,352,574 |
58 |
5,800 |
20.80 |
| 159 |
lesser rhea (bPtePen1 alternate hap 2023) |
Rhea pennata |
GCA_028389885.1_bPtePen1.alt |
910 |
983,620,806 |
0 |
0 |
21.55 |
| 160 |
lesser rhea (bPtePen1 primary hap 2023 refseq) |
Rhea pennata |
GCF_028389875.1_bPtePen1.pri |
180 |
1,269,016,774 |
128 |
1,451,673 |
22.80 |
| 161 |
lesser rhea (206185 2018) |
Rhea pennata |
GCA_003342835.1_rhePen1 |
3,019 |
1,168,291,008 |
1,039,616 |
16,746,726 |
19.17 |
| 162 |
little egret |
Egretta garzetta |
GCF_000687185.1_ASM68718v1 |
11,791 |
1,206,501,934 |
88,871 |
48,695,403 |
19.00 |
| 163 |
long-tailed hermit (PSU5 alternate hap 2022) |
Phaethornis superciliosus |
GCA_023637925.1_DD_ASM_B1a |
230 |
1,014,956,223 |
0 |
0 |
20.48 |
| 164 |
long-tailed hermit (PSU5 primary hap 2022) |
Phaethornis superciliosus |
GCA_023637945.1_DD_ASM_B1 |
70 |
1,020,112,811 |
141 |
3,809,484 |
20.12 |
| 165 |
Macqueen's bustard (BGI_N324 2014) |
Chlamydotis macqueenii |
GCF_000695195.1_ASM69519v1 |
59,693 |
1,086,566,339 |
56,130 |
3,604,992 |
20.04 |
| 166 |
Macqueen's bustard (maternal 2024) |
Chlamydotis macqueenii |
GCA_036417535.1_bChlMac1.mat |
329 |
1,273,933,319 |
100 |
20,000 |
27.09 |
| 167 |
Macqueen's bustard (paternal 2024) |
Chlamydotis macqueenii |
GCA_036418225.1_bChlMac1.pat |
343 |
1,106,587,813 |
84 |
16,800 |
25.27 |
| 168 |
maguari stork (bCicMag1 alternate hap 2021) |
Ciconia maguari |
GCA_017639665.1_bCicMag1.alt |
4,278 |
967,599,765 |
5 |
726 |
19.61 |
| 169 |
maguari stork (bCicMag1 primary hap 2021) |
Ciconia maguari |
GCA_017639555.1_bCicMag1.pri |
153 |
1,239,437,416 |
232 |
22,209,791 |
19.58 |
| 170 |
mallard CAU_Wild1.0 |
Anas platyrhynchos |
GCA_008746955.1_CAU_Wild1.0 |
1,665 |
1,211,992,756 |
318 |
1,235,431 |
25.07 |
| 171 |
mallard PBH1.5 |
Anas platyrhynchos |
GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 |
2,150 |
1,126,176,092 |
71,703 |
2,915,825 |
21.95 |
| 172 |
mallard ZJU1.0 |
Anas platyrhynchos |
GCF_015476345.1_ZJU1.0 |
756 |
1,188,533,289 |
905 |
4,230,438 |
24.63 |
| 173 |
Mariana crow |
Corvus kubaryi |
GCF_017639235.1_C.kubaryi_AGA036_p1.0 |
1,443 |
1,057,484,666 |
10,579 |
11,229,600 |
18.96 |
| 174 |
Mauritius kestrel (alternate hap 2023) |
Falco punctatus |
GCA_963210275.1_bFalPun1.1_alternate_haplotype |
2,259 |
390,584,314 |
0 |
0 |
22.52 |
| 175 |
Mauritius kestrel (primary hap 2023) |
Falco punctatus |
GCA_963210335.1_bFalPun1.1 |
316 |
1,279,277,844 |
407 |
81,600 |
22.85 |
| 176 |
Mauritius parakeet (alternate hap 2023) |
Psittacula echo |
GCA_963243765.1_bPsiEch3.1_alternate_haplotype |
2,130 |
791,895,490 |
0 |
0 |
24.89 |
| 177 |
Mauritius parakeet (primary hap 2023) |
Psittacula echo |
GCA_963264785.1_bPsiEch3.1 |
172 |
1,203,831,919 |
358 |
71,432 |
25.22 |
| 178 |
medium ground-finch |
Geospiza fortis |
GCF_000277835.1_GeoFor_1.0 |
27,239 |
1,065,292,181 |
68,589 |
24,006,152 |
19.54 |
| 179 |
monk parakeet |
Myiopsitta monachus |
GCA_017639245.1_MMon_1.0 |
291 |
1,168,583,304 |
352 |
175,021 |
22.56 |
| 180 |
mute swan (bCygOlo1 v2 alternate hap 2021) |
Cygnus olor |
GCA_009769485.2_bCygOlo1.alt.v2 |
5,626 |
814,594,871 |
14 |
918 |
20.18 |
| 181 |
mute swan (bCygOlo1 v2 primary hap 2021) |
Cygnus olor |
GCF_009769625.2_bCygOlo1.pri.v2 |
171 |
1,134,186,642 |
451 |
9,922,725 |
21.32 |
| 182 |
Nelson's sparrow (bAmmNel1 alternate hap 2023) |
Ammospiza nelsoni |
GCA_027579665.1_bAmmNel1.alt |
2,834 |
1,033,298,713 |
0 |
0 |
26.31 |
| 183 |
Nelson's sparrow (bAmmNel1 primary hap 2023 refseq) |
Ammospiza nelsoni |
GCF_027579445.1_bAmmNel1.pri |
77 |
1,185,463,352 |
215 |
5,092,979 |
25.88 |
| 184 |
New Caledonian crow (2019) |
Corvus moneduloides |
GCF_009650955.1_bCorMon1.pri |
105 |
1,112,734,094 |
289 |
28,870,195 |
19.58 |
| 185 |
New Caledonian crow (alternate hap 2019) |
Corvus moneduloides |
GCA_009651025.1_bCorMon1.alt |
894 |
905,198,257 |
0 |
0 |
19.52 |
| 186 |
Nicobar pigeon (hap1 2024) |
Caloenas nicobarica |
GCA_036013445.1_bCalNic1.hap1 |
807 |
1,285,851,275 |
117 |
20,400 |
28.09 |
| 187 |
Nicobar pigeon (hap2 2024) |
Caloenas nicobarica |
GCA_036010745.1_bCalNic1.hap2 |
226 |
1,197,404,482 |
118 |
20,600 |
23.25 |
| 188 |
North Island brown kiwi (hap1 2024) |
Apteryx mantelli |
GCA_036417845.1_bAptMan1.hap1 |
409 |
1,504,415,252 |
170 |
34,000 |
27.67 |
| 189 |
North Island brown kiwi (hap2 2024) |
Apteryx mantelli |
GCA_036417975.1_bAptMan1.hap2 |
349 |
1,593,539,360 |
155 |
31,000 |
30.47 |
| 190 |
northern bobwhite |
Colinus virginianus |
GCA_008692595.2_Cv_LA_2.0 |
6,035 |
948,540,911 |
33,134 |
9,181,491 |
19.59 |
| 191 |
northern fulmar |
Fulmarus glacialis |
GCF_000690835.1_ASM69083v1 |
57,389 |
1,141,395,646 |
54,825 |
5,766,974 |
18.44 |
| 192 |
northern gannet (hap1 2023) |
Morus bassanus |
GCA_031468805.1_bMorBas2.hap1 |
829 |
1,381,630,140 |
263 |
52,600 |
27.30 |
| 193 |
northern gannet (hap2 2023) |
Morus bassanus |
GCA_031468815.1_bMorBas2.hap2 |
421 |
1,294,804,326 |
248 |
49,600 |
21.09 |
| 194 |
northern goshawk (bAccGen1 v1 alternate hap 2022) |
Accipiter gentilis |
GCA_929447715.1_bAccGen1.1_alternate_haplotype |
4,484 |
1,112,029,929 |
2 |
50 |
24.06 |
| 195 |
northern goshawk (bAccGen1 primary hap v2 2022 genbank) |
Accipiter gentilis |
GCA_929443795.2_bAccGen1.2 |
455 |
1,398,030,142 |
183 |
36,600 |
27.31 |
| 196 |
northern goshawk (bAccGen1 primary hap v1 2022 refseq) |
Accipiter gentilis |
GCF_929443795.1_bAccGen1.1 |
454 |
1,398,011,397 |
183 |
36,600 |
27.31 |
| 197 |
northern pintail (primary hap 2024) |
Anas acuta |
GCA_963932015.1_bAnaAcu1.1 |
395 |
1,189,313,589 |
631 |
125,881 |
25.92 |
| 198 |
Obi paradise-crow (lycPyr6 2020) |
Lycocorax pyrrhopterus obiensis |
GCA_014706295.1_ASM1470629v1 |
1,695 |
1,107,771,238 |
1,602 |
5,759,488 |
20.21 |
| 199 |
Okarito brown kiwi |
Apteryx rowi |
GCF_003343035.1_aptRow1 |
4,120 |
1,228,902,913 |
696,987 |
19,303,568 |
18.35 |
| 200 |
Oriental scops-owl (oso-nibr-517 2020) |
Otus sunia |
GCA_010365825.1_OtuSun1.0 |
108,826 |
1,231,433,939 |
42,691 |
19,408,919 |
19.28 |
| 201 |
peregrine falcon (bFalPer1 alternate hap 2022) |
Falco peregrinus |
GCA_023634185.1_bFalPer1.alt |
2,745 |
1,175,509,191 |
0 |
0 |
21.18 |
| 202 |
peregrine falcon (bFalPer1 primary hap 2022 refseq) |
Falco peregrinus |
GCF_023634155.1_bFalPer1.pri |
125 |
1,311,598,859 |
241 |
4,014,394 |
24.67 |
| 203 |
peregrine falcon (BGI 2013) |
Falco peregrinus |
GCF_000337955.1_F_peregrinus_v1.0 |
7,021 |
1,171,973,431 |
76,069 |
18,569,083 |
18.40 |
| 204 |
pin-tailed whydah (BioBank_ID:100142 2022) |
Vidua macroura |
GCF_024509145.1_ASM2450914v1 |
146 |
1,123,269,635 |
338 |
33,800 |
23.75 |
| 205 |
pink pigeon (alternate hap 2023) |
Nesoenas mayeri |
GCA_963082445.1_bNesMay2.1_alternate_haplotype |
1,277 |
867,500,292 |
0 |
0 |
21.65 |
| 206 |
pink pigeon (primary hap 2023) |
Nesoenas mayeri |
GCA_963082525.1_bNesMay2.1 |
143 |
1,183,271,950 |
509 |
101,800 |
22.92 |
| 207 |
plumbeous ibis (bTheCae1 alternate hap 2021) |
Theristicus caerulescens |
GCA_020745805.1_bTheCae1.alt.cur |
749 |
1,041,135,290 |
4 |
95 |
19.61 |
| 208 |
plumbeous ibis (bTheCae1 primary hap 2021) |
Theristicus caerulescens |
GCA_020745775.1_bTheCae1.pri.cur |
88 |
1,203,372,763 |
104 |
2,268,207 |
20.10 |
| 209 |
Puerto Rican parrot (LU 182127 2020) |
Amazona vittata |
GCA_000332375.2_ASM33237v2 |
62,712 |
1,446,649,664 |
137,572 |
367,660,255 |
14.32 |
| 210 |
razorbill (2006_11_07_Graehlm_vinge_78 2019) |
Alca torda |
GCA_008658365.1_bAlcTor1_primary |
95 |
1,178,492,568 |
227 |
3,561,127 |
20.12 |
| 211 |
razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019) |
Alca torda |
GCA_008658355.1_bAlcTor1_alternate |
3,309 |
1,220,378,950 |
0 |
0 |
20.28 |
| 212 |
red-backed fairy wren (Western Australia 2023) |
Malurus melanocephalus |
GCF_030028575.1_MMel_1.1 |
10,634 |
1,020,684,368 |
3,337,637 |
34,751,376 |
18.48 |
| 213 |
red-crested turaco (2019) |
Tauraco erythrolophus |
GCA_009769465.1_bTauEry1.pri |
140 |
1,252,271,553 |
344 |
26,400,695 |
22.20 |
| 214 |
red-crested turaco (alternate hap 2019) |
Tauraco erythrolophus |
GCA_009764505.1_bTauEry1.alt |
3,476 |
1,084,112,861 |
0 |
0 |
21.89 |
| 215 |
red-fronted tinkerbird (bPogPus1 alternate hap 2020) |
Pogoniulus pusillus |
GCA_015220175.1_bPogPus1.alt |
2,748 |
1,101,771,457 |
12 |
2,226 |
34.66 |
| 216 |
red-fronted tinkerbird (bPogPus1 primary hap 2020) |
Pogoniulus pusillus |
GCA_015220805.1_bPogPus1.pri |
253 |
1,272,358,903 |
307 |
6,012,757 |
35.91 |
| 217 |
red-legged partridge |
Alectoris rufa |
GCA_019345075.1_ASM1934507v1 |
10,598 |
1,027,480,606 |
18,534 |
31,309,750 |
20.20 |
| 218 |
red-legged seriema (2019) |
Cariama cristata |
GCA_009819825.1_bCarCri1.pri |
110 |
1,215,245,693 |
194 |
4,933,338 |
19.73 |
| 219 |
red-legged seriema (alternate hap 2019) |
Cariama cristata |
GCA_009819485.1_bCarCri1.alt |
2,840 |
930,239,327 |
1 |
98 |
18.92 |
| 220 |
red-throated loon (BGI_N328 2014) |
Gavia stellata |
GCF_000690875.1_ASM69087v1 |
61,831 |
1,129,694,867 |
64,882 |
6,867,421 |
18.23 |
| 221 |
red-throated loon (hap1 2023) |
Gavia stellata |
GCA_030936125.1_bGavSte3.hap1 |
2,965 |
1,403,461,371 |
260 |
52,000 |
27.37 |
| 222 |
red-throated loon (hap2 2023 refseq) |
Gavia stellata |
GCF_030936135.1_bGavSte3.hap2 |
1,185 |
1,321,270,170 |
249 |
49,800 |
23.65 |
| 223 |
red-winged blackbird (BioBank_ID:100140 2023) |
Agelaius phoeniceus |
GCF_020745825.1_Agelaius_phoeniceus_1.1 |
410 |
1,188,547,179 |
106 |
51,600 |
25.46 |
| 224 |
rhinoceros hornbill |
Buceros rhinoceros silvestris |
GCF_000710305.1_ASM71030v1 |
62,257 |
1,065,782,791 |
118,543 |
17,002,997 |
17.77 |
| 225 |
rifleman (bAcaChl1 alternate hap 2021) |
Acanthisitta chloris |
GCA_016880875.1_bAcaChl1.alt |
2,879 |
827,793,803 |
20 |
1,043 |
19.12 |
| 226 |
rifleman (bAcaChl1 primary hap 2021) |
Acanthisitta chloris |
GCA_016904835.1_bAcaChl1.pri |
206 |
1,077,387,582 |
195 |
4,215,879 |
19.97 |
| 227 |
ring-necked pheasant |
Phasianus colchicus |
GCF_004143745.1_ASM414374v1 |
39,678 |
1,017,524,032 |
19,995 |
7,944,423 |
20.84 |
| 228 |
rock pigeon (Danish tumbler 2013 BGI) |
Columba livia |
GCF_000337935.1_Cliv_1.0 |
14,923 |
1,107,989,085 |
85,176 |
21,063,210 |
19.45 |
| 229 |
rock pigeon (racing homer maternal 2024) |
Columba livia |
GCA_036010775.1_bColLiv1.mat |
650 |
1,181,506,259 |
192 |
37,200 |
28.60 |
| 230 |
rock pigeon (racing homer paternal W 2024) |
Columba livia |
GCA_036013475.1_bColLiv1.pat.W |
870 |
1,325,583,211 |
248 |
46,800 |
29.94 |
| 231 |
rock ptarmigan (bLagMut1 alternate hap 2022) |
Lagopus muta |
GCA_023344045.1_bLagMut1_alternate |
3,212 |
923,340,374 |
13 |
1,320 |
20.42 |
| 232 |
rock ptarmigan (primary hap 2022 refseq) |
Lagopus muta |
GCF_023343835.1_bLagMut1_primary |
165 |
1,026,771,810 |
210 |
71,937 |
21.77 |
| 233 |
ruddy duck |
Oxyura jamaicensis |
GCF_011077185.1_BPBGC_Ojam_1.0 |
9,589 |
1,147,585,764 |
18,437 |
31,354,528 |
21.19 |
| 234 |
ruff |
Calidris pugnax |
GCF_001431845.1_ASM143184v1 |
3,753 |
1,229,094,286 |
30,404 |
46,140,523 |
20.49 |
| 235 |
rufous-necked snowfinch |
Pyrgilauda ruficollis |
GCF_017590135.1_ASM1759013v1 |
24,055 |
1,045,984,361 |
5,524 |
2,111,605 |
19.91 |
| 236 |
rusty-margined flycatcher (MyiCay16 2022) |
Myiozetetes cayanensis |
GCF_022539395.1_myiCay2020 |
1,692 |
1,075,628,138 |
181 |
1,370,356 |
20.32 |
| 237 |
saffron-crested tyrant-manakin |
Neopelma chrysocephalum |
GCF_003984885.1_ASM398488v2 |
38,089 |
1,139,224,170 |
15,342 |
11,277,790 |
20.91 |
| 238 |
sage sparrow (canescens MVZ Bird 192114 alternate hap 2022) |
Artemisiospiza belli |
GCA_021966175.1_bArtBel1.0.a |
43,035 |
2,257,281,749 |
12 |
1,212 |
43.91 |
| 239 |
sage sparrow (canescens MVZ Bird 192114 primary hap 2022) |
Artemisiospiza belli |
GCA_021963965.1_bArtBel1.0.p |
1,339 |
1,401,818,823 |
200 |
20,046 |
36.19 |
| 240 |
Saker falcon (bFalChe1 alternate hap 2022) |
Falco cherrug |
GCA_023634115.1_bFalChe1.alt |
4,160 |
1,210,282,093 |
2 |
51 |
23.62 |
| 241 |
Saker falcon (bFalChe1 primary hap 2022 refseq) |
Falco cherrug |
GCF_023634085.1_bFalChe1.pri |
283 |
1,309,385,023 |
258 |
3,961,655 |
24.96 |
| 242 |
Saker falcon (BGI 2013) |
Falco cherrug |
GCF_000337975.1_F_cherrug_v1.0 |
5,863 |
1,174,811,715 |
70,035 |
23,817,946 |
18.25 |
| 243 |
saltmarsh sparrow (bAmmCau1 alternate hap 2023) |
Ammospiza caudacuta |
GCA_027887135.1_bAmmCau1.alt |
3,054 |
1,166,743,317 |
0 |
0 |
26.27 |
| 244 |
saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq) |
Ammospiza caudacuta |
GCF_027887145.1_bAmmCau1.pri |
282 |
1,241,209,685 |
363 |
2,919,107 |
29.04 |
| 245 |
Savannah sparrow (FMNH 499929 alternate hap 2022) |
Passerculus sandwichensis alaudinus |
GCA_022578375.1_bPasSan1.0.a |
29,743 |
1,785,383,892 |
1,822 |
182,214 |
28.02 |
| 246 |
Savannah sparrow (primary hap 2023) |
Passerculus sandwichensis |
GCA_031885435.1_bPasSan2.pri |
110 |
1,270,940,266 |
249 |
2,812,735 |
27.00 |
| 247 |
Savannah sparrow (FMNH 499929 primary hap 2022) |
Passerculus sandwichensis alaudinus |
GCA_022577445.1_bPasSan1.0.p |
337 |
1,152,292,115 |
339 |
33,925 |
24.47 |
| 248 |
seaside sparrow (bAmmMar1 primary hap 2024) |
Ammospiza maritima maritima |
GCA_036010785.1_bAmmMar1.pri |
501 |
1,397,856,043 |
365 |
2,055,583 |
34.58 |
| 249 |
small tree finch (2019) |
Camarhynchus parvulus |
GCF_901933205.1_STF_HiC |
1,345 |
1,051,609,828 |
185 |
92,500 |
22.09 |
| 250 |
small tree finch (2020) |
Camarhynchus parvulus |
GCA_902806625.1_Camarhynchus_parvulus_V1.1 |
1,756 |
1,064,016,364 |
224 |
112,000 |
22.28 |
| 251 |
song sparrow (gouldii PMB2087b alternate hap 2022) |
Melospiza melodia |
GCA_022749775.1_bMelMel1.0.a |
34,688 |
1,938,102,026 |
5 |
505 |
40.27 |
| 252 |
song sparrow (primary hap 2024) |
Melospiza melodia melodia |
GCA_035770615.1_bMelMel2.pri |
354 |
1,541,261,971 |
299 |
1,079,098 |
39.28 |
| 253 |
song sparrow (gouldii PMB2087b primary hap 2022) |
Melospiza melodia |
GCA_022749695.1_bMelMel1.0.p |
501 |
1,356,304,709 |
323 |
32,321 |
34.69 |
| 254 |
South Island takahe (alternate 2021) |
Porphyrio hochstetteri |
GCA_020801775.1_bPorHoc1.pat.decon |
178 |
1,245,128,614 |
238 |
10,404,950 |
24.85 |
| 255 |
South Island takahe (primary 2021) |
Porphyrio hochstetteri |
GCA_020800305.1_bPorHoc1.mat.Z.cur |
174 |
1,270,294,353 |
327 |
5,316,249 |
25.92 |
| 256 |
speckled mousebird (BGI_N325 2014) |
Colius striatus |
GCF_000690715.1_ASM69071v1 |
70,188 |
1,075,931,597 |
44,462 |
3,761,058 |
19.44 |
| 257 |
speckled mousebird (hap1 2023) |
Colius striatus |
GCA_028858725.1_bColStr4.hap1 |
189 |
1,123,441,015 |
143 |
5,827,944 |
23.45 |
| 258 |
speckled mousebird (hap2 2023) |
Colius striatus |
GCA_028858625.1_bColStr4.hap2 |
243 |
1,242,527,572 |
151 |
5,489,805 |
25.54 |
| 259 |
steelblue widowfinch (purged dups hap OUT-0048 2022) |
Vidua chalybeata |
GCA_026979555.1_bVidCha1_purged_dups_haplotype |
1,939 |
154,870,056 |
0 |
0 |
34.87 |
| 260 |
steelblue widowfinch (merged hap OUT-0048 2022) |
Vidua chalybeata |
GCA_026979565.1_bVidCha1_merged_haplotype |
178 |
1,080,457,469 |
458 |
165,531 |
20.96 |
| 261 |
Steller's jay (frontalis alternate hap 2022) |
Cyanocitta stelleri |
GCA_026168045.1_bCyaSte1.0.a |
957 |
1,177,494,911 |
200 |
20,000 |
27.12 |
| 262 |
Steller's jay (frontalis primary hap 2022) |
Cyanocitta stelleri |
GCA_026167965.1_bCyaSte1.0.p |
352 |
1,162,964,953 |
223 |
22,300 |
23.69 |
| 263 |
sun parakeet (2019) |
Aratinga solstitialis |
GCA_902168055.1_ARATINGA-SOLSTITIALIS-ASSEMBLY-PRJEB33153 |
1,570 |
1,169,445,099 |
578,921 |
36,076,735 |
21.17 |
| 264 |
sunbittern |
Eurypyga helias |
GCF_000690775.1_ASM69077v1 |
62,699 |
1,088,019,637 |
52,471 |
4,990,991 |
18.84 |
| 265 |
Suruca trogon (bTroSur1 alternate hap 2021) |
Trogon surrucura |
GCA_020746095.1_bTroSur1.alt.cur |
1,535 |
997,329,498 |
17 |
496 |
21.93 |
| 266 |
Suruca trogon (bRtoSur1 primary hap 2021) |
Trogon surrucura |
GCA_020746105.1_bTroSur1.pri.cur |
182 |
1,165,749,515 |
253 |
10,270,755 |
22.51 |
| 267 |
Swainson's thrush (bCatUst1 v2 alternate hap 2020) |
Catharus ustulatus |
GCA_009819505.2_bCatUst1.alt.v2 |
3,601 |
1,128,658,440 |
13 |
343 |
22.74 |
| 268 |
Swainson's thrush (bCatUst1 v2 primary hap 2020) |
Catharus ustulatus |
GCF_009819885.2_bCatUst1.pri.v2 |
160 |
1,131,616,530 |
429 |
12,903,695 |
22.52 |
| 269 |
swamp sparrow (bMelGeo1 alternate hap 2023) |
Melospiza georgiana |
GCA_028019105.1_bMelGeo1.alt |
862 |
1,075,048,352 |
0 |
0 |
25.04 |
| 270 |
swamp sparrow (bMelGeo1 primary hap 2023 refseq) |
Melospiza georgiana |
GCF_028018845.1_bMelGeo1.pri |
40 |
1,162,015,399 |
236 |
1,233,091 |
24.53 |
| 271 |
swan goose (Sichuan white goose 2017) |
Anser cygnoides |
GCF_002166845.1_GooseV1.0 |
1,802 |
1,130,293,421 |
63,061 |
29,604,614 |
19.74 |
| 272 |
swan goose (Tianfu 2020) |
Anser cygnoides |
GCA_013030995.1_ASM1303099v1 |
2,119 |
1,113,895,350 |
716 |
71,600 |
21.22 |
| 273 |
swan goose (Zhedong 2015) |
Anser cygnoides domesticus |
GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 |
7,593 |
1,119,151,626 |
84,351 |
35,379,405 |
19.45 |
| 274 |
tawny frogmouth (bPodStr1 alternate hap 2023) |
Podargus strigoides |
GCA_028020675.1_bPodStr1.alt |
911 |
977,391,185 |
1 |
35 |
22.09 |
| 275 |
tawny frogmouth (bPodStr1 primary hap 2023) |
Podargus strigoides |
GCA_028020825.1_bPodStr1.pri |
1,038 |
1,271,141,449 |
203 |
2,167,278 |
27.67 |
| 276 |
tawny owl (hap1 2023) |
Strix aluco |
GCA_031877795.1_bStrAlu1.hap1 |
203 |
1,414,802,443 |
281 |
4,312,653 |
27.44 |
| 277 |
tawny owl (hap2 2023) |
Strix aluco |
GCA_031877785.1_bStrAlu1.hap2 |
184 |
1,219,048,950 |
206 |
1,471,991 |
24.84 |
| 278 |
Tibetan ground-tit |
Pseudopodoces humilis |
GCF_000331425.1_PseHum1.0 |
5,406 |
1,042,997,632 |
21,646 |
12,967,196 |
19.96 |
| 279 |
tourmaline sunangel (hap1 2024) |
Heliangelus exortis |
GCA_036169615.1_bHelExo1.hap1 |
131 |
1,049,650,714 |
437 |
85,400 |
21.23 |
| 280 |
tourmaline sunangel (hap2 2024) |
Heliangelus exortis |
GCA_036172335.1_bHelExo1.hap2 |
200 |
969,853,240 |
370 |
72,600 |
21.82 |
| 281 |
tricolored blackbird (1412-34295 alternate hap 2022) |
Agelaius tricolor |
GCA_023055385.1_bAgeTri1.0.a |
450 |
1,142,379,013 |
97 |
9,700 |
25.05 |
| 282 |
tricolored blackbird (1412-34295 primary hap 2022) |
Agelaius tricolor |
GCA_023055355.1_bAgeTri1.0.p |
214 |
1,157,608,456 |
97 |
9,700 |
23.38 |
| 283 |
tufted duck (alternate hap 2019) |
Aythya fuligula |
GCA_009819845.1_bAytFul2.alt |
780 |
1,013,629,683 |
1 |
100 |
21.73 |
| 284 |
tufted duck (2019) |
Aythya fuligula |
GCF_009819795.1_bAytFul2.pri |
105 |
1,127,004,725 |
163 |
9,417,397 |
22.39 |
| 285 |
turkey (Aviagen NT-WF06-2002-E0010 2014) |
Meleagris gallopavo |
GCF_000146605.3_Turkey_5.1 |
185,175 |
1,115,474,681 |
65,045 |
35,294,427 |
21.11 |
| 286 |
turkey (WU_HG_1 2021) |
Meleagris gallopavo |
GCA_905368555.1_MGAL_WU_HG_1.0 |
151 |
1,001,818,376 |
81 |
11,546 |
21.07 |
| 287 |
village indigobird (OUT-0048 2022) |
Vidua chalybeata |
GCF_026979565.1_bVidCha1_merged_haplotype |
177 |
1,080,440,577 |
458 |
165,531 |
20.96 |
| 288 |
Virginia rail (171378401 alternate hap 2022) |
Rallus limicola |
GCA_022605895.1_bRalLim1.0.a |
4,450 |
1,425,697,905 |
668 |
66,800 |
32.20 |
| 289 |
Virginia rail (171378401 primary hap 2022) |
Rallus limicola |
GCA_022605955.1_bRalLim1.0.p |
1,102 |
1,395,598,026 |
197 |
19,704 |
32.38 |
| 290 |
western capercaillie (alternate hap 2023) |
Tetrao urogallus |
GCA_951394355.1_bTetUro1.1_alternate_haplotype |
5,463 |
853,758,599 |
0 |
0 |
20.30 |
| 291 |
western capercaillie (primary hap 2023) |
Tetrao urogallus |
GCA_951394365.1_bTetUro1.1 |
318 |
1,013,184,029 |
973 |
194,600 |
21.16 |
| 292 |
western scrub-jay (CA MVZ Bird 193978 2023) |
Aphelocoma californica |
GCA_028536645.1_bAphCal1.0.hap2 |
1,631 |
1,191,279,315 |
168 |
16,800 |
27.56 |
| 293 |
western scrub-jay (CA MVZ Bird 193978 2023) |
Aphelocoma californica |
GCA_028536675.1_bAphCal1.0.hap1 |
1,393 |
1,348,500,425 |
272 |
27,200 |
32.03 |
| 294 |
whiskered treeswift (bHemCom1 alternate hap 2021) |
Hemiprocne comata |
GCA_020745695.1_bHemCom1.alt.cur |
2,405 |
1,052,608,110 |
1 |
13 |
20.56 |
| 295 |
whiskered treeswift (bHemCor1 primary hap 2021) |
Hemiprocne comata |
GCA_020745705.1_bHemCom1.pri.cur |
146 |
1,164,813,063 |
218 |
10,174,467 |
21.46 |
| 296 |
white wagtail |
Motacilla alba alba |
GCF_015832195.1_Motacilla_alba_V1.0_pri |
619 |
1,072,670,728 |
906 |
903,500 |
22.46 |
| 297 |
white-collared manakin (Guabito, Panama 608988 2022) |
Manacus candei |
GCF_025592945.1_ASM2559294v1 |
643 |
1,121,284,527 |
0 |
0 |
21.52 |
| 298 |
white-crowned manakin (hap1 2024) |
Pseudopipra pipra |
GCA_036250125.1_bDixPip1.hap1 |
697 |
1,165,219,370 |
323 |
64,600 |
21.92 |
| 299 |
white-crowned manakin (hap2 2024) |
Pseudopipra pipra |
GCA_036250135.1_bDixPip1.hap2 |
595 |
1,027,640,383 |
307 |
61,400 |
21.40 |
| 300 |
white-ruffed manakin |
Corapipo altera |
GCF_003945725.1_ASM394572v1 |
9,068 |
1,095,745,976 |
13,527 |
8,367,350 |
19.82 |
| 301 |
white-rumped snowfinch |
Onychostruthus taczanowskii |
GCF_017590055.1_ASM1759005v1 |
11,576 |
1,033,733,724 |
4,869 |
1,970,431 |
20.31 |
| 302 |
white-tailed eagle (BGI_N329 2014) |
Haliaeetus albicilla |
GCF_000691405.1_ASM69140v1 |
50,905 |
1,133,549,865 |
60,579 |
5,093,567 |
18.15 |
| 303 |
white-tailed eagle (bHalAlb1.1 2022) |
Haliaeetus albicilla |
GCA_947461875.1_bHalAlb1.1 |
188 |
1,320,298,205 |
424 |
84,800 |
23.68 |
| 304 |
white-tailed eagle (bHalAlb1.1 alternate hap 2022) |
Haliaeetus albicilla |
GCA_947461935.1_bHalAlb1.1_alternate_haplotype |
4,971 |
693,161,704 |
0 |
0 |
22.93 |
| 305 |
white-tailed ptarmigan |
Lagopus leucura |
GCF_019238085.1_USGS_WTPT01 |
7,343 |
1,016,020,572 |
10,501 |
24,149,164 |
20.12 |
| 306 |
white-tailed tropicbird |
Phaethon lepturus |
GCF_000687285.1_ASM68728v1 |
66,785 |
1,152,958,507 |
65,286 |
5,878,041 |
19.61 |
| 307 |
white-throated dipper (primary hap 2023) |
Cinclus cinclus |
GCA_963662255.1_bCinCin1.1 |
278 |
1,170,855,695 |
658 |
131,600 |
26.63 |
| 308 |
white-throated sparrow |
Zonotrichia albicollis |
GCF_000385455.1_Zonotrichia_albicollis-1.0.1 |
6,018 |
1,052,600,561 |
41,460 |
46,307,051 |
19.15 |
| 309 |
white-throated tinamou |
Tinamus guttatus |
GCF_000705375.1_ASM70537v2 |
82,514 |
1,047,056,493 |
59,853 |
22,243,067 |
18.98 |
| 310 |
whooping crane (maternal hap 2023 refseq) |
Grus americana |
GCF_028858705.1_bGruAme1.mat |
930 |
1,257,837,975 |
262 |
4,676,178 |
22.13 |
| 311 |
whooping crane (paternal hap 2023) |
Grus americana |
GCA_028858595.1_bGruAme1.pat |
395 |
1,200,805,165 |
586 |
5,991,895 |
20.22 |
| 312 |
willow flycatcher |
Empidonax traillii |
GCF_003031625.1_ASM303162v1 |
7,791 |
1,123,485,537 |
39,319 |
52,589,169 |
18.90 |
| 313 |
wire-tailed manakin (2020) |
Pipra filicauda |
GCF_003945595.2_ASM394559v2 |
1,768 |
1,081,944,082 |
758 |
2,866,801 |
20.23 |
| 314 |
wrentit (frontalis MVZ Bird 193981 alternate hap 2023) |
Chamaea fasciata |
GCA_029207785.1_bChaFas1.0.hap2 |
1,350 |
1,194,527,585 |
342 |
34,200 |
25.86 |
| 315 |
wrentit (frontalis MVZ Bird 193981 primary hap 2023) |
Chamaea fasciata |
GCA_029207755.1_bChaFas1.0.hap1 |
1,342 |
1,194,545,626 |
353 |
35,300 |
25.86 |
| 316 |
yellow warbler (LACM:Birds122168 alternate hap 2022) |
Setophaga petechia |
GCA_024372515.1_bSetPet1.0.a |
530 |
1,249,765,916 |
246 |
24,600 |
28.85 |
| 317 |
yellow warbler (LACM:Birds122168 primary hap 2022) |
Setophaga petechia |
GCA_024362935.1_bSetPet1.0.p |
687 |
1,222,385,072 |
284 |
28,400 |
26.21 |
| 318 |
yellow-throated sandgrouse (2019) |
Pterocles gutturalis |
GCA_009769525.1_bPteGut1.pri |
89 |
1,127,422,757 |
242 |
4,303,557 |
21.19 |
| 319 |
yellow-throated sandgrouse (alternate hap 2019) |
Pterocles gutturalis |
GCA_009769505.1_bPteGut1.alt |
1,958 |
1,037,717,354 |
0 |
0 |
20.79 |
| 320 |
zebra finch (Black17 v1.4 alternate hap 2021) |
Taeniopygia guttata |
GCA_003957525.2_bTaeGut1.4.alt |
1,646 |
887,567,949 |
10 |
876 |
20.75 |
| 321 |
zebra finch (Blue55 v1.4 primary hap 2021) |
Taeniopygia guttata |
GCF_003957565.2_bTaeGut1.4.pri |
199 |
1,056,271,262 |
352 |
3,634,788 |
20.99 |
| 322 |
zebra finch (Blue55 2020) |
Taeniopygia guttata |
GCA_009859065.2_bTaeGut2.pri.v2 |
541 |
1,106,297,559 |
789 |
21,820,589 |
20.08 |
| 323 |
zebra finch (alternate hap Black17 2018) |
Taeniopygia guttata |
GCA_003957525.1_bTaeGut1_v1.h |
5,336 |
965,644,423 |
45 |
136,365 |
20.33 |
| 324 |
zebra finch (alternate hap Blue55 v1 2020) |
Taeniopygia guttata |
GCA_009859025.1_bTaeGut2.p.v1.alt |
4,677 |
947,919,714 |
16 |
113,756 |
19.27 |
| 325 |
zebra finch (Blue55 maternal v3 2020) |
Taeniopygia guttata |
GCA_008822115.3_bTaeGut2.mat.v3 |
206 |
995,952,786 |
583 |
15,480,445 |
20.34 |
| 326 |
zebra finch (Blue55 paternal 2019) |
Taeniopygia guttata |
GCA_008822125.1_bTaeGut2pat |
202 |
1,047,569,904 |
828 |
20,734,162 |
20.05 |
| 327 |
zebra finch (Blue55 paternal W 2020) |
Taeniopygia guttata |
GCF_008822105.2_bTaeGut2.pat.W.v2 |
205 |
1,068,988,106 |
857 |
21,568,737 |
20.18 |