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Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.
count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Bolivian squirrel monkey (2011) GCF_000235385.1 |
39,820 (2.33 %) |
20,222 (2.04 %) |
18,404 (1.34 %) |
49,071 (2.26 %) |
40.77 (94.98 %) |
148,728 (5.04 %) |
151,414 (94.96 %) |
4,710,420 (46.30 %) |
767,602 (1.48 %) |
14,489,703 (32.96 %) |
32,474 (0.75 %) |
2 | Chinese hamster GCF_003668045.1 |
55,529 (3.00 %) |
20,195 (1.84 %) |
20,021 (1.50 %) |
46,526 (2.01 %) |
41.51 (99.88 %) |
4,356 (0.12 %) |
1,830 (100.00 %) |
4,431,956 (32.72 %) |
1,095,407 (2.92 %) |
12,942,232 (32.27 %) |
19,343 (0.58 %) |
3 | fly D.yakuba (2018) GCF_000005975.2 |
5,444 (4.10 %) |
13,713 (15.95 %) |
22,613 (16.71 %) |
n/a | 42.28 (98.12 %) |
5,400 (1.88 %) |
13,440 (98.12 %) |
180,908 (22.48 %) |
68,911 (3.75 %) |
897,353 (23.94 %) |
31,387 (14.91 %) |
4 | giant panda GCF_000004335.2 |
40,432 (2.55 %) |
18,906 (1.75 %) |
18,924 (1.46 %) |
n/a | 41.60 (97.66 %) |
119,126 (2.36 %) |
200,593 (97.64 %) |
4,143,948 (40.06 %) |
503,179 (1.10 %) |
13,781,487 (28.85 %) |
53,461 (1.34 %) |
5 | hooded crow (2017) GCF_000738735.2 |
35,874 (6.47 %) |
11,298 (1.84 %) |
17,627 (2.12 %) |
n/a | 41.48 (97.07 %) |
27,795 (2.94 %) |
113 (100.00 %) |
392,199 (5.95 %) |
139,126 (0.76 %) |
6,141,002 (18.21 %) |
12,943 (0.48 %) |
6 | house mouse GCF_000001635.26 |
124,364 (4.53 %) |
23,962 (2.07 %) |
23,974 (1.75 %) |
n/a | 41.73 (97.18 %) |
904 (2.82 %) |
21,179 (97.18 %) |
5,418,774 (44.61 %) |
1,695,255 (3.40 %) |
13,041,229 (35.91 %) |
25,014 (0.54 %) |
7 | Indian medaka GCF_002922805.1 |
47,300 (9.26 %) |
14,575 (2.49 %) |
52,989 (6.38 %) |
36,821 (8.90 %) |
39.04 (94.73 %) |
51,440 (5.29 %) |
8,603 (100.00 %) |
321,738 (2.19 %) |
208,749 (2.67 %) |
5,412,794 (33.26 %) |
40,721 (2.36 %) |
8 | Japanese quail GCF_001577835.1 |
47,008 (7.38 %) |
12,866 (2.54 %) |
31,341 (3.50 %) |
37,604 (4.36 %) |
41.28 (98.88 %) |
11,601 (1.12 %) |
9,642 (98.88 %) |
573,609 (7.86 %) |
321,128 (2.22 %) |
5,497,911 (19.81 %) |
17,977 (1.86 %) |
9 | mangrove rivulus GCF_001649575.1 |
45,306 (11.02 %) |
14,523 (2.83 %) |
47,746 (6.85 %) |
30,573 (9.35 %) |
40.03 (94.35 %) |
29,388 (5.66 %) |
3,073 (100.00 %) |
345,782 (2.29 %) |
146,268 (1.33 %) |
4,717,260 (27.31 %) |
39,557 (2.69 %) |
10 | Norway rat BN7 genbank GCA_015227675.2 |
n/a | 21,523 (1.86 %) |
19,627 (1.36 %) |
n/a | 41.99 (99.19 %) |
581 (0.81 %) |
757 (99.19 %) |
4,895,563 (44.53 %) |
1,514,974 (3.57 %) |
13,450,428 (35.83 %) |
19,244 (0.46 %) |
11 | olive baboon GCF_000264685.3 |
84,433 (3.85 %) |
20,362 (1.83 %) |
21,971 (1.22 %) |
53,493 (1.55 %) |
40.99 (99.25 %) |
58,981 (0.76 %) |
118,811 (99.24 %) |
5,439,424 (52.46 %) |
1,068,912 (5.55 %) |
16,068,088 (38.71 %) |
95,595 (1.41 %) |
12 | pike-perch GCF_008315115.1 |
56,221 (8.23 %) |
15,682 (2.23 %) |
52,929 (5.62 %) |
63,087 (6.22 %) |
40.92 (100.00 %) |
94 (0.00 %) |
1,313 (100.00 %) |
601,762 (5.04 %) |
569,876 (7.39 %) |
4,713,605 (36.32 %) |
39,545 (1.93 %) |
13 | platypus (2019 v1) GCF_004115215.1 |
56,708 (3.09 %) |
14,785 (1.26 %) |
19,402 (1.68 %) |
42,892 (2.60 %) |
46.13 (99.18 %) |
522 (0.82 %) |
305 (100.00 %) |
5,069,299 (51.33 %) |
577,434 (2.88 %) |
9,110,403 (48.91 %) |
87,764 (6.47 %) |
14 | silvery gibbon GCF_009828535.1 |
54,238 (2.74 %) |
17,887 (2.00 %) |
18,517 (1.25 %) |
n/a | 41.17 (98.20 %) |
18,567 (1.80 %) |
18,392 (100.00 %) |
4,399,357 (50.55 %) |
711,948 (2.37 %) |
12,623,705 (36.55 %) |
67,835 (1.30 %) |
15 | Tasmanian devil GCF_000189315.1 |
32,527 (1.79 %) |
16,114 (0.84 %) |
16,157 (0.94 %) |
n/a | 36.05 (92.36 %) |
201,403 (7.66 %) |
237,291 (92.34 %) |
6,635,117 (42.69 %) |
1,240,681 (2.07 %) |
20,998,733 (36.61 %) |
23,155 (0.38 %) |
16 | thirteen-lined ground squirrel (2011) GCF_000236235.1 |
41,886 (2.61 %) |
19,185 (1.69 %) |
18,099 (1.44 %) |
33,336 (2.34 %) |
39.91 (93.27 %) |
141,005 (6.75 %) |
153,488 (93.25 %) |
4,262,694 (35.63 %) |
640,337 (1.64 %) |
14,116,066 (27.91 %) |
28,321 (0.64 %) |
17 | Ugandan red Colobus GCF_002776525.2 |
66,965 (2.69 %) |
21,958 (1.85 %) |
24,388 (1.22 %) |
55,722 (1.95 %) |
40.60 (97.10 %) |
63,620 (2.91 %) |
47,449 (100.00 %) |
5,699,639 (51.61 %) |
1,066,606 (2.87 %) |
16,603,622 (37.49 %) |
71,084 (1.08 %) |
18 | white-footed mouse GCF_004664715.1 |
46,167 (2.56 %) |
20,389 (1.72 %) |
20,857 (1.46 %) |
n/a | 42.23 (100.00 %) |
79 (0.00 %) |
1,763 (100.00 %) |
4,919,207 (29.60 %) |
1,258,088 (2.85 %) |
14,005,845 (33.01 %) |
23,475 (0.69 %) |
19 | white-tufted-ear marmoset GCF_000004665.1 |
58,109 (2.92 %) |
21,732 (1.90 %) |
21,605 (1.29 %) |
n/a | 40.85 (94.45 %) |
187,214 (5.57 %) |
201,523 (94.43 %) |
5,022,252 (48.60 %) |
768,432 (2.30 %) |
15,303,718 (34.75 %) |
35,805 (0.79 %) |
20 | white-tufted-ear marmoset GCA_009663435.1 |
n/a | 21,762 (1.88 %) |
22,357 (1.36 %) |
n/a | 40.85 (98.70 %) |
370 (1.30 %) |
1,360 (98.70 %) |
5,122,415 (49.40 %) |
818,502 (3.68 %) |
15,232,829 (38.20 %) |
36,656 (0.90 %) |
21 | wire-tailed manakin (2018) GCF_003945595.1 |
50,529 (5.75 %) |
12,929 (1.88 %) |
24,817 (2.40 %) |
n/a | 42.30 (100.00 %) |
102 (0.00 %) |
3,744 (100.00 %) |
510,461 (7.13 %) |
300,638 (2.31 %) |
6,414,267 (20.54 %) |
28,268 (2.21 %) |
22 | woodchuck GCA_901343595.1 |
n/a | 20,813 (1.60 %) |
23,199 (1.43 %) |
n/a | 40.00 (97.18 %) |
57,045 (2.82 %) |
105,556 (97.18 %) |
4,756,333 (33.73 %) |
836,503 (2.41 %) |
14,755,960 (31.13 %) |
34,151 (0.87 %) |
23 | yellow-bellied marmot GCF_003676075.1 |
41,573 (2.14 %) |
19,863 (1.62 %) |
21,279 (1.39 %) |
n/a | 39.88 (97.82 %) |
38,354 (2.18 %) |
69,503 (97.82 %) |
4,540,536 (33.43 %) |
799,659 (1.95 %) |
14,322,765 (32.58 %) |
34,127 (0.91 %) |
TOTALS: | total assembly count 23 |
Additional hubs with collections of assemblies | |||
---|---|---|---|
Collection | Hub index pages: | Assembly statistics: | Track statistics: |
Primates | 31 assemblies | assembly stats | track stats |
Mammals | 132 assemblies | assembly stats | track stats |
Birds | 80 assemblies | assembly stats | track stats |
Fishes | 110 assemblies | assembly stats | track stats |
other vertebrates | 41 assemblies | assembly stats | track stats |
Invertebrates | 239 assemblies | assembly stats | track stats |
Plants | 132 assemblies | assembly stats | track stats |
Fungi | 355 assemblies | assembly stats | track stats |
VGP - Vertebrate Genome Project | 189 assemblies | assembly stats | track stats |
legacy/superseded | 23 assemblies | assembly stats | track stats |