Legacy Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base gaps assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 cpg
islands
1 African clawed frog (2016)
GCF_001663975.1		 61,172
(41.31 %)		 23,407
(1.77 %)		 47,466
(1.76 %)		 n/a 38.98
(88.63 %)		 216,028
(11.39 %)		 324,061
(88.61 %)		 3,739,339
(33.13 %)		 680,419
(2.28 %)		 13,887,586
(35.94 %)		 85,680
(0.94 %)
2 black-legged tick (U.Maryland v1 2021)
GCF_016920785.1		 41,018
(2.61 %)		 4,064
(0.14 %)		 135,587
(7.67 %)		 n/a 46.27
(100.00 %)		 n/a 2,977
(100.00 %)		 1,153,773
(4.93 %)		 754,711
(7.52 %)		 10,964,182
(43.13 %)		 138,831
(8.38 %)
3 Bolivian squirrel monkey (2011)
GCF_000235385.1		 39,820
(2.33 %)		 20,222
(2.04 %)		 18,404
(1.34 %)		 49,071
(2.26 %)		 40.77
(94.98 %)		 148,728
(5.04 %)		 151,414
(94.96 %)		 4,710,420
(46.30 %)		 767,602
(1.48 %)		 14,489,703
(32.96 %)		 32,474
(0.75 %)
4 China rose (Old Blush v1 2018)
GCF_002994745.1		 60,293
(11.65 %)		 15,433
(2.84 %)		 67,310
(21.70 %)		 n/a 38.83
(100.00 %)		 33
(0.00 %)		 45
(100.00 %)		 273,992
(2.25 %)		 228,466
(3.97 %)		 2,261,888
(35.14 %)		 37,317
(4.18 %)
5 Chinese hamster
GCF_003668045.1		 55,529
(3.00 %)		 20,195
(1.84 %)		 20,021
(1.50 %)		 46,526
(2.01 %)		 41.51
(99.88 %)		 4,356
(0.12 %)		 1,830
(100.00 %)		 4,431,956
(32.72 %)		 1,095,407
(2.92 %)		 12,942,232
(32.27 %)		 19,343
(0.58 %)
6 elephant shark (2013)
GCF_000165045.1		 30,695
(52.05 %)		 11,646
(1.60 %)		 28,786
(2.60 %)		 49,990
(4.61 %)		 42.34
(96.16 %)		 46,232
(3.85 %)		 67,421
(96.15 %)		 1,926,864
(38.18 %)		 330,698
(2.60 %)		 5,549,534
(36.65 %)		 35,561
(2.16 %)
7 Eurasian water vole (v1 2020)
GCF_903992535.1		 45,658
(2.52 %)		 19,724
(1.77 %)		 19,069
(1.47 %)		 n/a 42.15
(99.74 %)		 872
(0.26 %)		 216
(100.00 %)		 4,098,151
(26.75 %)		 1,088,237
(2.91 %)		 12,853,776
(32.42 %)		 19,000
(0.58 %)
8 fly D.yakuba (2018)
GCF_000005975.2		 5,444
(4.10 %)		 13,713
(15.95 %)		 22,613
(16.71 %)		 n/a 42.28
(98.12 %)		 5,400
(1.88 %)		 13,440
(98.12 %)		 180,908
(22.48 %)		 68,911
(3.75 %)		 897,353
(23.94 %)		 31,387
(14.91 %)
9 giant panda
GCF_000004335.2		 40,432
(2.55 %)		 18,906
(1.75 %)		 18,924
(1.46 %)		 n/a 41.60
(97.66 %)		 119,126
(2.36 %)		 200,593
(97.64 %)		 4,143,948
(40.06 %)		 503,179
(1.10 %)		 13,781,487
(28.85 %)		 53,461
(1.34 %)
10 hooded crow (2017)
GCF_000738735.2		 35,874
(6.47 %)		 11,298
(1.84 %)		 17,627
(2.12 %)		 n/a 41.48
(97.07 %)		 27,795
(2.94 %)		 113
(100.00 %)		 392,199
(5.95 %)		 139,126
(0.76 %)		 6,141,002
(18.21 %)		 12,943
(0.48 %)
11 house mouse
GCF_000001635.26		 124,364
(4.53 %)		 23,962
(2.07 %)		 23,974
(1.75 %)		 n/a 41.73
(97.18 %)		 904
(2.82 %)		 21,179
(97.18 %)		 5,418,774
(44.61 %)		 1,695,255
(3.40 %)		 13,041,229
(35.91 %)		 25,014
(0.54 %)
12 Indian medaka
GCF_002922805.1		 47,300
(9.26 %)		 14,575
(2.49 %)		 52,989
(6.38 %)		 36,821
(8.90 %)		 39.04
(94.73 %)		 51,440
(5.29 %)		 8,603
(100.00 %)		 321,738
(2.19 %)		 208,749
(2.67 %)		 5,412,794
(33.26 %)		 40,721
(2.36 %)
13 Japanese quail
GCF_001577835.1		 47,008
(7.38 %)		 12,866
(2.54 %)		 31,341
(3.50 %)		 37,604
(4.36 %)		 41.28
(98.88 %)		 11,601
(1.12 %)		 9,642
(98.88 %)		 573,609
(7.86 %)		 321,128
(2.22 %)		 5,497,911
(19.81 %)		 17,977
(1.86 %)
14 malo sina (v1 2012)
GCF_000231095.1		 29,549
(16.44 %)		 15,120
(6.45 %)		 49,515
(30.69 %)		 n/a 40.48
(93.32 %)		 20,693
(6.71 %)		 23,184
(93.29 %)		 115,049
(2.29 %)		 51,516
(1.90 %)		 1,488,940
(24.12 %)		 42,077
(12.05 %)
15 mangrove rivulus
GCF_001649575.1		 45,306
(11.02 %)		 14,523
(2.83 %)		 47,746
(6.85 %)		 30,573
(9.35 %)		 40.03
(94.35 %)		 29,388
(5.66 %)		 3,073
(100.00 %)		 345,782
(2.29 %)		 146,268
(1.33 %)		 4,717,260
(27.31 %)		 39,557
(2.69 %)
16 Norway rat BN7 genbank
GCA_015227675.2		 n/a 21,523
(1.86 %)		 19,627
(1.36 %)		 n/a 41.99
(99.19 %)		 581
(0.81 %)		 757
(99.19 %)		 4,895,563
(44.53 %)		 1,514,974
(3.57 %)		 13,450,428
(35.83 %)		 19,244
(0.46 %)
17 olive baboon
GCF_000264685.3		 84,433
(3.85 %)		 20,362
(1.83 %)		 21,971
(1.22 %)		 53,493
(1.55 %)		 40.99
(99.25 %)		 58,981
(0.76 %)		 118,811
(99.24 %)		 5,439,424
(52.46 %)		 1,068,912
(5.55 %)		 16,068,088
(38.71 %)		 95,595
(1.41 %)
18 pike-perch
GCF_008315115.1		 56,221
(8.23 %)		 15,682
(2.23 %)		 52,929
(5.62 %)		 63,087
(6.22 %)		 40.92
(100.00 %)		 94
(0.00 %)		 1,313
(100.00 %)		 601,762
(5.04 %)		 569,876
(7.39 %)		 4,713,605
(36.32 %)		 39,545
(1.93 %)
19 platypus (2019 v1)
GCF_004115215.1		 56,708
(3.09 %)		 14,785
(1.26 %)		 19,402
(1.68 %)		 42,892
(2.60 %)		 46.13
(99.18 %)		 522
(0.82 %)		 305
(100.00 %)		 5,069,299
(51.33 %)		 577,434
(2.88 %)		 9,110,403
(48.91 %)		 87,764
(6.47 %)
20 Siamese fighting fish (v2 2019)
GCF_900634795.2		 54,389
(16.95 %)		 14,751
(4.20 %)		 56,791
(10.87 %)		 62,753
(13.02 %)		 45.30
(99.99 %)		 328
(0.01 %)		 70
(100.00 %)		 255,553
(3.51 %)		 184,269
(4.62 %)		 2,010,934
(23.88 %)		 72,126
(13.08 %)
21 silvery gibbon
GCF_009828535.1		 54,238
(2.74 %)		 17,887
(2.00 %)		 18,517
(1.25 %)		 n/a 41.17
(98.20 %)		 18,567
(1.80 %)		 18,392
(100.00 %)		 4,399,357
(50.55 %)		 711,948
(2.37 %)		 12,623,705
(36.55 %)		 67,835
(1.30 %)
22 soybean (US DOE JGI-PGF v1 2018)
GCF_000004515.5		 85,123
(9.72 %)		 27,647
(3.06 %)		 77,190
(11.83 %)		 n/a 34.77
(97.65 %)		 15,995
(2.36 %)		 17,187
(97.64 %)		 834,651
(37.35 %)		 436,225
(5.65 %)		 5,341,721
(45.30 %)		 35,897
(1.47 %)
23 Tasmanian devil
GCF_000189315.1		 32,527
(1.79 %)		 16,114
(0.84 %)		 16,157
(0.94 %)		 n/a 36.05
(92.36 %)		 201,403
(7.66 %)		 237,291
(92.34 %)		 6,635,117
(42.69 %)		 1,240,681
(2.07 %)		 20,998,733
(36.61 %)		 23,155
(0.38 %)
24 thirteen-lined ground squirrel (2011)
GCF_000236235.1		 41,886
(2.61 %)		 19,185
(1.69 %)		 18,099
(1.44 %)		 33,336
(2.34 %)		 39.91
(93.27 %)		 141,005
(6.75 %)		 153,488
(93.25 %)		 4,262,694
(35.63 %)		 640,337
(1.64 %)		 14,116,066
(27.91 %)		 28,321
(0.64 %)
25 Ugandan red Colobus
GCF_002776525.2		 66,965
(2.69 %)		 21,958
(1.85 %)		 24,388
(1.22 %)		 55,722
(1.95 %)		 40.60
(97.10 %)		 63,620
(2.91 %)		 47,449
(100.00 %)		 5,699,639
(51.61 %)		 1,066,606
(2.87 %)		 16,603,622
(37.49 %)		 71,084
(1.08 %)
26 white-footed mouse
GCF_004664715.1		 46,167
(2.56 %)		 20,389
(1.72 %)		 20,857
(1.46 %)		 n/a 42.23
(100.00 %)		 79
(0.00 %)		 1,763
(100.00 %)		 4,919,207
(29.60 %)		 1,258,088
(2.85 %)		 14,005,845
(33.01 %)		 23,475
(0.69 %)
27 white-tufted-ear marmoset
GCF_000004665.1		 58,109
(2.92 %)		 21,732
(1.90 %)		 21,605
(1.29 %)		 n/a 40.85
(94.45 %)		 187,214
(5.57 %)		 201,523
(94.43 %)		 5,022,252
(48.60 %)		 768,432
(2.30 %)		 15,303,718
(34.75 %)		 35,805
(0.79 %)
28 white-tufted-ear marmoset
GCA_009663435.1		 n/a 21,762
(1.88 %)		 22,357
(1.36 %)		 n/a 40.85
(98.70 %)		 370
(1.30 %)		 1,360
(98.70 %)		 5,122,415
(49.40 %)		 818,502
(3.68 %)		 15,232,829
(38.20 %)		 36,656
(0.90 %)
29 wire-tailed manakin (2018)
GCF_003945595.1		 50,529
(5.75 %)		 12,929
(1.88 %)		 24,817
(2.40 %)		 n/a 42.30
(100.00 %)		 102
(0.00 %)		 3,744
(100.00 %)		 510,461
(7.13 %)		 300,638
(2.31 %)		 6,414,267
(20.54 %)		 28,268
(2.21 %)
30 woodchuck
GCA_901343595.1		 n/a 20,813
(1.60 %)		 23,199
(1.43 %)		 n/a 40.00
(97.18 %)		 57,045
(2.82 %)		 105,556
(97.18 %)		 4,756,333
(33.73 %)		 836,503
(2.41 %)		 14,755,960
(31.13 %)		 34,151
(0.87 %)
31 Yangtze finless porpoise (v1)
GCF_003031525.1		 43,312
(2.49 %)		 18,741
(1.80 %)		 19,643
(1.46 %)		 n/a 41.28
(99.29 %)		 52,647
(0.72 %)		 66,346
(99.28 %)		 3,926,819
(42.04 %)		 540,765
(1.65 %)		 12,691,760
(32.87 %)		 59,052
(1.48 %)
32 yellow-bellied marmot
GCF_003676075.1		 41,573
(2.14 %)		 19,863
(1.62 %)		 21,279
(1.39 %)		 n/a 39.88
(97.82 %)		 38,354
(2.18 %)		 69,503
(97.82 %)		 4,540,536
(33.43 %)		 799,659
(1.95 %)		 14,322,765
(32.58 %)		 34,127
(0.91 %)
33 zebra finch (v1 2019)
GCF_003957565.1		 51,472
(7.16 %)		 13,210
(2.01 %)		 25,575
(2.63 %)		 38,869
(7.10 %)		 42.04
(99.78 %)		 312
(0.22 %)		 135
(100.00 %)		 545,004
(8.45 %)		 550,118
(4.01 %)		 6,519,872
(21.47 %)		 30,053
(2.56 %)
TOTALS:total assembly count 33

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 31 assemblies assembly stats track stats
Mammals 157 assemblies assembly stats track stats
Birds 86 assemblies assembly stats track stats
Fishes 121 assemblies assembly stats track stats
other vertebrates 45 assemblies assembly stats track stats
Invertebrates 249 assemblies assembly stats track stats
Plants 138 assemblies assembly stats track stats
Fungi 390 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 210 assemblies assembly stats track stats
legacy/superseded 33 assemblies assembly stats track stats