Invertebrate Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of invertebrate only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/invertebrate/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Invertebrate Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSampleBioProject assembly date,
source link
1 African malaria mosquito Anopheles gambiae str. PEST GCF_000005575.2_AgamP3 SAMN02952903 PRJNA1438 2006-10-16
2 agent of lymphatic filariasis Brugia malayi GCF_000002995.3_ASM299v2 SAMN02953652 PRJNA10729 2008-03-04
3 alfalfa leafcutting bee Megachile rotundata GCF_000220905.1_MROT_1.0 SAMN02953795 PRJNA66515 2011-07-19
4 Alkali bee Nomia melanderi GCF_003710045.1_USU_Nmel_1.2 SAMN10185933 PRJNA494873 2018-11-02
5 amphipods H.azetca Hyalella azteca GCF_000764305.1_Hazt_2.0 SAMN02978968 PRJNA243935 2016-07-20
6 ant A.cephalotes Atta cephalotes GCF_000143395.1_Attacep1.0 SAMN02953774 PRJNA48091 2010-07-06
7 ant A.colombica Atta colombica GCF_001594045.1_Acol1.0 SAMN03982875 PRJNA292624 2016-03-25
8 ant C.costatus Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 SAMN03982885 PRJNA292630 2016-03-25
9 ant D.quadriceps Dinoponera quadriceps GCF_001313825.1_ASM131382v1 SAMN02869781 PRJNA253275 2015-10-13
10 ant F.exsecta Formica exsecta GCF_003651465.1_ASM365146v1 SAMN07344805 PRJNA393850 2018-10-15
11 ant N.fulva Nylanderia fulva GCF_005281655.1_TAMU_Nfulva_1.0 SAMN10848236 PRJNA517949 2019-05-13
12 ant O.brunneus Odontomachus brunneus GCF_010583005.1_Obru_v1 SAMN08712586 PRJNA432980 2020-02-13
13 ant P.gracilis Pseudomyrmex gracilis GCF_002006095.1_ASM200609v1 SAMN03219222 PRJNA268384 2017-02-23
14 ant T.cornetzi Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 SAMN03982882 PRJNA292627 2016-03-25
15 ant T.curvispinosus Temnothorax curvispinosus GCF_003070985.1_ASM307098v1 SAMN08906336 PRJNA449537 2018-04-24
16 ant T.septentrionalis Trachymyrmex septentrionalis GCF_001594115.1_Tsep1.0 SAMN03982881 PRJNA292625 2016-03-25
17 ant T.zeteki Trachymyrmex zeteki GCF_001594055.1_Tzet1.0 SAMN03982884 PRJNA292628 2016-03-31
18 ant V.emeryi Vollenhovia emeryi GCF_000949405.1_V.emery_V1.0 SAMD00026325 PRJDB3517 2015-03-06
19 aphids M.sacchari Melanaphis sacchari GCF_002803265.2_SCAv2.0 SAMN07757676 PRJNA413550 2018-06-22
20 apple maggot Rhagoletis pomonella GCF_013731165.1_Rhpom_1.0 SAMN05388941 PRJNA328976 2020-06-18
21 Argentine ant Linepithema humile GCF_000217595.1_Lhum_UMD_V04 SAMN02767796 PRJNA45799 2011-06-10
22 Asian citrus psyllid Diaphorina citri GCF_000475195.1_Diaci_psyllid_genome_assembly_version_1.1 SAMN00100712 PRJNA29447 2013-10-22
23 Asian corn borer Ostrinia furnacalis GCF_004193835.1_ASM419383v1 SAMN08335163 PRJNA429307 2019-02-13
24 Asian giant hornet Vespa mandarinia GCF_014083535.2_V.mandarinia_Nanaimo_p1.0 SAMN15675875 PRJNA649644 2020-08-06
25 Asian longhorned beetle Anoplophora glabripennis GCF_000390285.2_Agla_2.0 SAMN02222868 PRJNA167479 2017-12-12
26 Asian malaria mosquito Anopheles stephensi GCF_013141755.1_UCI_ANSTEP_V1.0 SAMN14792744 PRJNA629843 2020-06-09
27 Asian swallowtail Papilio xuthus GCF_000836235.1_Pxut_1.0 SAMD00018698 PRJDB2956 2015-02-02
28 Asian tiger mosquito Aedes albopictus GCF_006496715.1_Aalbo_primary.1 SAMN11317331 PRJNA530512 2019-06-28
29 Asiatic honeybee Apis cerana GCF_001442555.1_ACSNU-2.0 SAMN02592885 PRJNA235974 2015-11-12
30 Atlantic horseshoe crab Limulus polyphemus GCF_000517525.1_Limulus_polyphemus-2.1.2 SAMN02953878 PRJNA20489 2014-01-03
31 Australian red waratah sea anemone Actinia tenebrosa GCF_009602425.1_ASM960242v1 SAMN10439458 PRJNA505921 2019-11-06
32 Australian sheep blowfly Lucilia cuprina GCF_000699065.1_Lcup_2.0 SAMN02422564 PRJNA203545 2017-12-15
33 bark scorpion Centruroides sculpturatus GCF_000671375.1_Cexi_2.0 SAMN02617800 PRJNA168116 2017-12-12
34 bat star Patiria miniata GCF_015706575.1_ASM1570657v1 SAMN13694171 PRJNA597964 2020-12-01
35 bed bug Cimex lectularius GCF_000648675.2_Clec_2.1 SAMN02649412 PRJNA167477 2017-12-12
36 bee B.bifarius Bombus bifarius GCF_011952205.1_Bbif_JDL3187 SAMN13353518 PRJNA591177 2020-04-03
37 bee B.vancouverensis nearcticus Bombus vancouverensis nearcticus GCF_011952275.1_Bvanc_JDL1245 SAMN14341632 PRJNA611633 2020-04-03
38 bee B.vosnesenskii Bombus vosnesenskii GCF_011952255.1_Bvos_JDL3184-5_v1.1 SAMN14404301 notFound 2020-04-03
39 bee C.calcarata Ceratina calcarata GCF_001652005.1_ASM165200v1 SAMN04252592 PRJNA299559 2016-05-25
40 bee D.novaeangliae Dufourea novaeangliae GCF_001272555.1_ASM127255v1 SAMN03837760 PRJNA279825 2015-08-21
41 bee E.mexicana Eufriesea mexicana GCF_001483705.1_ASM148370v1 SAMN03801430 PRJNA279814 2016-05-09
42 bee H.laboriosa Habropoda laboriosa GCF_001263275.1_ASM126327v1 SAMN03462987 PRJNA279436 2015-08-13
43 bee M.genalis Megalopta genalis GCF_011865705.1_USU_MGEN_1.2 SAMN10185932 notFound 2020-04-01
44 beetle N.vespilloides Nicrophorus vespilloides GCF_001412225.1_Nicve_v1.0 SAMN03733533 PRJNA284849 2015-10-23
45 beetle O.taurus Onthophagus taurus GCF_000648695.1_Otau_2.0 SAMN02628949 PRJNA167478 2017-10-31
46 Belcher's lancelet Branchiostoma belcheri GCF_001625305.1_Haploidv18h27 SAMN04869859 PRJNA214454 2016-04-21
47 bivalves P.maximus Pecten maximus GCF_902652985.1_xPecMax1.1 SAMEA994736 PRJEB35330 2019-11-26
48 black tiger shrimp Penaeus monodon GCF_015228065.1_NSTDA_Pmon_1 SAMN14330694 PRJNA611030 2020-11-05
49 black-legged tick (2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi SAMN16793453 PRJNA678334 2021-02-23
50 black-legged tick (2018) Ixodes scapularis GCF_002892825.2_ISE6_asm2.2_deduplicated SAMN06329993 PRJNA345486 2018-09-28
51 bloodfluke planorb Biomphalaria glabrata GCF_000457365.1_ASM45736v1 SAMN02953846 PRJNA12879 2013-09-06
52 brachiopods L.anatina Lingula anatina GCF_001039355.2_LinAna2.0 SAMN03770811 PRJNA286275 2018-01-26
53 brown dog tick Rhipicephalus sanguineus GCF_013339695.1_ASM1333969v1 SAMN14941062 PRJNA633311 2020-06-16
54 brown marmorated stink bug Halyomorpha halys GCF_000696795.2_Hhal_2.0 SAMN02737379 PRJNA168118 2017-12-15
55 brown planthopper (NLH13 2014) Nilaparvata lugens GCF_000757685.1_NilLug1.0 SAMN03077662 PRJNA177647 2014-09-24
56 brown planthopper (BPH 2020) Nilaparvata lugens GCF_014356525.1_ASM1435652v1 SAMN13382557 PRJNA591478 2020-09-09
57 buff-tailed bumblebee Bombus terrestris GCF_000214255.1_Bter_1.0 SAMN00009041 PRJNA45869 2011-06-03
58 butterflies V.tameamea Vanessa tameamea GCF_002938995.1_ASM293899v1 SAMN07695352 PRJNA412104 2018-02-23
59 cabbage looper Trichoplusia ni GCF_003590095.1_tn1 SAMN07304761 PRJNA336361 2018-09-24
60 cabbage white Pieris rapae GCF_001856805.1_P_rapae_3842_assembly_v2 SAMN04866668 PRJNA318727 2016-10-16
61 California sea hare Aplysia californica GCF_000002075.1_AplCal3.0 SAMN02953658 PRJNA13635 2013-05-15
62 cat flea Ctenocephalides felis GCF_003426905.1_ASM342690v1 SAMN09779028 PRJNA484943 2018-08-24
63 cephalopods Octopus bimaculoides GCF_001194135.1_Octopus_bimaculoides_v2_0 SAMN03271701 PRJNA270931 2015-08-18
64 clonal raider ant Ooceraea biroi GCF_003672135.1_Obir_v5.4 SAMN09281275 PRJNA420369 2018-10-23
65 coleseed sawfly Athalia rosae GCF_000344095.2_Aros_2.0 SAMN02953829 PRJNA167403 2018-01-03
66 Colorado potato beetle Leptinotarsa decemlineata GCF_000500325.1_Ldec_2.0 SAMN02376991 PRJNA171749 2017-10-31
67 common eastern bumble bee Bombus impatiens GCF_000188095.3_BIMP_2.2 SAMN02953787 PRJNA61101 2011-09-22
68 common eastern firefly Photinus pyralis GCF_008802855.1_Ppyr1.3 SAMN08132578 PRJNA378805 2019-10-02
69 common green bottle fly Lucilia sericata GCF_015586225.1_ASM1558622v1 SAMN13896454 PRJNA602506 2020-11-18
70 common house spider Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 SAMN02364452 PRJNA167405 2017-04-14
71 common Mormon Papilio polytes GCF_000836215.1_Ppol_1.0 SAMD00018697 PRJDB2954 2015-02-02
72 common yellow swallowtail Papilio machaon GCF_001298355.1_Pap_ma_1.0 SAMN03290678 PRJNA270386 2015-09-28
73 corn leaf aphid Rhopalosiphum maidis GCF_003676215.2_ASM367621v3 SAMN09625554 PRJNA480062 2019-02-06
74 cotton aphid Aphis gossypii GCF_004010815.1_ASM401081v1 SAMN08384359 PRJNA431119 2019-01-10
75 cotton bollworm Helicoverpa armigera GCF_002156985.1_Harm_1.0 SAMN06608624 PRJNA378437 2017-05-22
76 crinoids A.japonica Anneissia japonica GCF_011630105.1_ASM1163010v1 SAMN12241982 PRJNA553656 2020-03-23
77 crown-of-thorns starfish Acanthaster planci GCF_001949145.1_OKI-Apl_1.0 SAMD00054104 PRJDB3175 2016-12-20
78 crustacean D.magna Daphnia magna GCF_003990815.1_ASM399081v1 SAMN10036042 PRJNA490418 2019-01-07
79 crustacean E.affinis Eurytemora affinis GCF_000591075.1_Eaff_2.0 SAMN02302763 PRJNA203087 2017-12-12
80 crustacean P.pollicipes Pollicipes pollicipes GCF_011947565.2_Ppol_2 SAMN14444043 PRJNA614970 2020-10-27
81 diamondback moth Plutella xylostella GCF_905116875.1_Haplomerged_assembly SAMEA5988831 PRJEB34571 2020-11-22
82 dogface butterfly Zerene cesonia GCF_012273895.1_Zerene_cesonia_1.1 SAMN13981747 PRJNA587792 2020-10-02
83 domestic silkworm Bombyx mori GCF_014905235.1_Bmori_2016v1.0 SAMD00054089 PRJDB4947 2020-10-13
84 East Asian common octopus Octopus sinensis GCF_006345805.1_ASM634580v1 SAMN11633729 PRJNA541812 2019-06-17
85 eastern oyster Crassostrea virginica GCF_002022765.2_C_virginica-3.0 SAMN06349363 PRJNA376014 2017-09-01
86 emerald ash borer Agrilus planipennis GCF_000699045.2_Apla_2.0 SAMN02439909 PRJNA230921 2018-01-03
87 European house dust mite Dermatophagoides pteronyssinus GCF_001901225.1_ASM190122v2 SAMN06062376 PRJNA353927 2017-06-21
88 European paper wasp Polistes dominula GCF_001465965.1_Pdom_r1.2 SAMN02584905 PRJNA234105 2015-12-14
89 eye worm Loa loa GCF_000183805.2_Loa_loa_V3.1 SAMN00103043 PRJNA37757 2012-07-06
90 fall armyworm Spodoptera frugiperda GCF_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05
91 flatworm E.granulosus Echinococcus granulosus GCF_000524195.1_ASM52419v1 SAMN01914755 PRJEB121 2014-01-28
92 flatworm S.haematobium Schistosoma haematobium GCF_000699445.2_SchHae_2.0 SAMN11431408 PRJNA78265 2020-01-28
93 flatworm S.mansoni Schistosoma mansoni GCF_000237925.1_ASM23792v2 SAMEA2272516 PRJEA36577 2011-12-13
94 Florida carpenter ant Camponotus floridanus GCF_003227725.1_Cflo_v7.5 SAMN08810141 PRJNA445978 2018-06-14
95 Florida lancelet Branchiostoma floridae GCF_000003815.2_Bfl_VNyyK SAMN02953694 PRJNA20249 2020-04-29
96 fly B.coprophila Bradysia coprophila GCF_014529535.1_BU_Bcop_v1 SAMN12533751 PRJNA291918 2020-09-11
97 fly B.latifrons Bactrocera latifrons GCF_001853355.1_ASM185335v1 SAMN05727007 PRJNA338810 2016-10-25
98 fly D.albomicans Drosophila albomicans GCF_009650485.1_drosAlbom15112-1751.03v1 SAMN12703415 PRJNA554139 2019-11-14
99 fly D.ananassae Drosophila ananassae GCF_003285975.2_DanaRS2.1 SAMN09383008 PRJNA475270 2018-10-23
100 fly D.arizonae Drosophila arizonae GCF_001654025.1_ASM165402v1 SAMN04440796 PRJNA309836 2016-05-09
101 fly D.biarmipes Drosophila biarmipes GCF_000233415.1_Dbia_2.0 SAMN00714466 PRJNA62307 2013-03-04
102 fly D.bipectinata Drosophila bipectinata GCF_000236285.1_Dbip_2.0 SAMN00714473 PRJNA62313 2013-03-04
103 fly D.busckii Drosophila busckii GCF_011750605.1_ASM1175060v1 SAMN13899428 PRJNA450810 2020-03-26
104 fly D.elegans Drosophila elegans GCF_000224195.1_Dele_2.0 SAMN00715014 PRJNA62315 2013-03-04
105 fly D.erecta Drosophila erecta GCF_003286155.1_DereRS2 SAMN09383010 PRJNA475270 2018-10-23
106 fly D.eugracilis Drosophila eugracilis GCF_000236325.1_Deug_2.0 SAMN00715289 PRJNA67709 2013-03-04
107 fly D.ficusphila Drosophila ficusphila GCF_000220665.1_Dfic_2.0 SAMN00715126 PRJNA62317 2013-03-04
108 fly D.grimshawi Drosophila grimshawi GCF_000005155.2_dgri_caf1 SAMN02953650 PRJNA12678 2006-06-30
109 fly D.guanche Drosophila guanche GCF_900245975.1_DGUA_6 SAMEA104164776 PRJEB21790 2018-09-20
110 fly D.hydei Drosophila hydei GCF_003285905.1_DhydRS2 SAMN09383128 PRJNA475270 2019-05-29
111 fly D.innubila Drosophila innubila GCF_004354385.1_UK_Dinn_1.0 SAMN11037163 PRJNA524688 2019-03-19
112 fly D.kikkawai Drosophila kikkawai GCF_000224215.1_Dkik_2.0 SAMN00715127 PRJNA62319 2013-03-04
113 fly D.mauritiana Drosophila mauritiana GCF_004382145.1_ASM438214v1 SAMN06827991 PRJNA383250 2019-04-16
114 fly D.melanogaster Drosophila melanogaster GCF_000001215.4_Release_6_plus_ISO1_MT SAMN02803731 PRJNA13812 2014-08-01
115 fly D.miranda Drosophila miranda GCF_003369915.1_D.miranda_PacBio2.1 SAMN09375764 PRJNA474939 2019-09-23
116 fly D.mojavensis Drosophila mojavensis GCF_000005175.2_dmoj_caf1 SAMN02953651 PRJNA12682 2006-06-30
117 fly D.navojoa Drosophila navojoa GCF_001654015.2_UFRJ_Dnav_4.2 SAMN04440794 PRJNA309833 2019-03-18
118 fly D.novamexicana Drosophila novamexicana GCF_003285875.2_DnovRS2.1 SAMN09383009 PRJNA475270 2018-10-23
119 fly D.obscura Drosophila obscura GCF_002217835.1_Dobs_1.0 SAMD00047210 PRJDB4578 2017-07-01
120 fly D.persimilis Drosophila persimilis GCF_003286085.1_DperRS2 SAMN09383163 PRJNA475270 2018-10-23
121 fly D.pseudoobscura Drosophila pseudoobscura GCF_009870125.1_UCI_Dpse_MV25 SAMN13616452 PRJNA596268 2020-03-03
122 fly D.rhopaloa Drosophila rhopaloa GCF_000236305.1_Drho_2.0 SAMN00715129 PRJNA67665 2013-02-22
123 fly D.santomea Drosophila santomea GCF_016746245.1_Prin_Dsan_1.0 SAMN15573959 PRJNA647033 2021-01-25
124 fly D.sechellia Drosophila sechellia GCF_004382195.1_ASM438219v1 SAMN06827992 PRJNA383250 2019-04-16
125 fly D.serrata Drosophila serrata GCF_002093755.1_Dser1.0 SAMN06092698 PRJNA355616 2017-04-14
126 fly D.simulans Drosophila simulans GCF_016746395.1_Prin_Dsim_3.0 SAMN06473875 PRJNA377886 2021-01-25
127 fly D.subobscura Drosophila subobscura GCF_008121235.1_UCBerk_Dsub_1.0 SAMN11963385 PRJNA545704 2019-08-28
128 fly D.subpulchrella Drosophila subpulchrella GCF_014743375.2_RU_Dsub_v1.1 SAMN15820779 PRJNA557422 2020-10-02
129 fly D.suzukii Drosophila suzukii GCF_013340165.1_LBDM_Dsuz_2.1.pri SAMN13521054 PRJNA594550 2020-06-15
130 fly D.takahashii Drosophila takahashii GCF_000224235.1_Dtak_2.0 SAMN00715130 PRJNA62321 2013-03-04
131 fly D.virilis Drosophila virilis GCF_003285735.1_DvirRS2 SAMN09383168 PRJNA475270 2018-10-23
132 fly D.willistoni Drosophila willistoni GCF_000005925.1_dwil_caf1 SAMN02953653 PRJNA12664 2006-08-03
133 fly D.yakuba (2021) Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 SAMN15573791 PRJNA647028 2021-01-25
134 fly H.illucens Hermetia illucens GCF_905115235.1_iHerIll2.2.curated.20191125 SAMEA6847289 PRJEB37575 2020-11-21
135 fly S.lebanonensis Scaptodrosophila lebanonensis GCF_003285725.1_SlebRS2 SAMN09383169 PRJNA475270 2019-05-29
136 fly T.dalmanni Teleopsis dalmanni GCF_002237135.1_ASM223713v2 SAMN07271145 PRJNA391339 2020-11-06
137 gastropods P.canaliculata Pomacea canaliculata GCF_003073045.1_ASM307304v1 SAMN08443704 PRJNA427478 2018-05-11
138 giant honeybee Apis dorsata GCF_000469605.1_Apis_dorsata_1.3 SAMN02954476 PRJNA174631 2013-09-24
139 greater wax moth Galleria mellonella GCF_003640425.2_ASM364042v2 SAMN10148411 PRJNA494147 2019-11-06
140 green peach aphid Myzus persicae GCF_001856785.1_MPER_G0061.0 SAMN04909046 PRJNA319804 2016-09-19
141 hemichordates S.kowalevskii Saccoglossus kowalevskii GCF_000003605.2_Skow_1.1 SAMN00102747 PRJNA12887 2009-09-09
142 honey bee Apis mellifera GCF_003254395.2_Amel_HAv3.1 SAMN09259743 PRJNA471592 2018-09-10
143 honeybee mite Varroa destructor GCF_002443255.1_Vdes_3.0 SAMD00093521 PRJDB6279 2017-09-27
144 house fly Musca domestica GCF_000371365.1_Musca_domestica-2.0.2 SAMN02953849 PRJNA176013 2013-04-22
145 human body louse Pediculus humanus corporis GCF_000006295.1_JCVI_LOUSE_1.0 SAMN02953682 notFound 2007-04-23
146 hydrozoans H.vulgaris Hydra vulgaris GCF_000004095.1_Hydra_RP_1.0 SAMN00000081 PRJNA12876 2009-10-30
147 hymenopterans O.abietinus Orussus abietinus GCF_000612105.2_Oabi_2.0 SAMN02225314 PRJNA171756 2017-12-15
148 Jerdon's jumping ant Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 SAMN08810140 PRJNA445978 2018-06-14
149 jewel wasp Nasonia vitripennis GCF_009193385.2_Nvit_psr_1.1 SAMN12877551 PRJNA575073 2020-01-30
150 little fire ant Wasmannia auropunctata GCF_000956235.1_wasmannia.A_1.0 SAMD00024919 PRJDB3443 2015-03-17
151 little honeybee Apis florea GCF_000184785.3_Aflo_1.1 SAMN00009081 PRJNA45871 2012-12-07
152 Mediterranean fruit fly Ceratitis capitata GCF_000347755.3_Ccap_2.1 SAMN02953830 PRJNA168120 2017-11-06
153 melon fly Zeugodacus cucurbitae GCF_000806345.1_ASM80634v1 SAMN03083541 PRJNA259565 2014-12-23
154 mite V.jacobsoni Varroa jacobsoni GCF_002532875.1_vjacob_1.0 SAMN07256664 PRJNA391052 2017-10-10
155 monarch butterfly Danaus plexippus plexippus GCF_009731565.1_Dplex_v4 SAMN01758044 PRJNA564985 2019-12-11
156 mosquito A.albimanus Anopheles albimanus GCF_013758885.1_VT_AalbS3_pri_1.0 SAMN14582895 PRJNA622927 2020-08-06
157 mosquito A.arabiensis Anopheles arabiensis GCF_016920715.1_AaraD3 SAMN14999448 PRJNA634549 2021-03-10
158 mosquito A.coluzzi Anopheles coluzzii GCF_016920705.1_AcolMOP1 SAMN14999449 PRJNA634549 2021-03-10
159 moth A.transitella Amyelois transitella GCF_001186105.1_ASM118610v1 SAMN03009087 PRJNA254820 2015-07-22
160 moth H.kahamanoa Hyposmocoma kahamanoa GCF_003589595.1_ASM358959v1 SAMN09932754 PRJNA488386 2018-09-21
161 moth S.litura Spodoptera litura GCF_002706865.1_ASM270686v1 SAMN05845584 PRJNA344815 2017-10-25
162 mountain pine beetle Dendroctonus ponderosae GCF_000355655.1_DendPond_male_1.0 SAMN01121785 PRJNA162621 2013-04-10
163 nematode C.briggsae Caenorhabditis briggsae GCF_000004555.1_ASM455v1 n/a PRJNA10731 2008-05-01
164 nematode C.remanei Caenorhabditis remanei GCF_000149515.1_ASM14951v1 SAMN00627085 PRJNA12588 2007-07-19
165 nematode N.americanus Necator americanus GCF_000507365.1_N_americanus_v1 SAMN02953824 PRJNA72135 2013-12-20
166 nematode S.ratti Strongyloides ratti GCF_001040885.1_S_ratti_ED321 SAMEA1682816 PRJEB125 2014-09-18
167 nematode T.spiralis Trichinella spiralis GCF_000181795.1_Trichinella_spiralis-3.7.1 SAMN02953711 PRJNA12603 2011-01-11
168 northern house mosquito Culex pipiens pallens GCF_016801865.1_TS_Cpip_V1 SAMN16414976 PRJNA668557 2021-02-02
169 olive fruit fly Bactrocera oleae GCF_001188975.3_MU_Boleae_v2 SAMN03840585 PRJNA288990 2019-04-30
170 orchard mason bee Osmia lignaria GCF_012274295.1_USDA_OLig_1.0 SAMN14365276 PRJNA553797 2020-04-13
171 oriental fruit fly Bactrocera dorsalis GCF_000789215.1_ASM78921v2 SAMN02203716 PRJNA208413 2014-12-03
172 owl limpet Lottia gigantea GCF_000327385.1_Helro1 SAMN02769626 PRJNA175706 2012-12-20
173 Pacific oyster Crassostrea gigas GCF_902806645.1_cgigas_uk_roslin_v1 SAMEA6259236 PRJEB35351 2020-02-19
174 Pacific white shrimp Penaeus vannamei GCF_003789085.1_ASM378908v1 SAMN08721527 PRJNA438564 2018-11-16
175 Panamanian leafcutter ant Acromyrmex echinatior GCF_000204515.1_Aech_3.9 SAMN02953789 PRJNA62733 2011-05-03
176 pea aphid Acyrthosiphon pisum GCF_005508785.1_pea_aphid_22Mar2018_4r6ur SAMN10253041 PRJNA496478 2019-05-20
177 pharaoh ant Monomorium pharaonis GCF_013373865.1_ASM1337386v2 SAMN15097795 PRJNA634441 2020-08-14
178 placozoans T.adhaerens Trichoplax adhaerens GCF_000150275.1_v1.0 SAMN02953699 PRJNA12874 2008-06-17
179 priapulids P.caudatus Priapulus caudatus GCF_000485595.1_Priapulus_caudatus-5.0.1 SAMN02953874 PRJNA20497 2015-11-19
180 purple sea urchin Strongylocentrotus purpuratus GCF_000002235.5_Spur_5.0 SAMN00829422 PRJNA10736 2019-09-06
181 Queensland fruit fly Bactrocera tryoni GCF_016617805.1_CSIRO_BtryS06_freeze2 SAMN12586630 PRJNA560467 2021-01-19
182 red fire ant (2018) Solenopsis invicta GCF_000188075.2_Si_gnH SAMN02953778 PRJNA49629 2018-08-01
183 red fire ant (2021) Solenopsis invicta GCF_016802725.1_UNIL_Sinv_3.0 SAMN17294113 PRJNA691522 2021-02-03
184 red flour beetle Tribolium castaneum GCF_000002335.3_Tcas5.2 SAMN02953634 PRJNA12540 2016-03-10
185 red harvester ant Pogonomyrmex barbatus GCF_000187915.1_Pbar_UMD_V03 SAMN02953770 PRJNA45797 2011-02-04
186 red mason bee Osmia bicornis bicornis GCF_004153925.1_Obicornis_v3 SAMN05967202 PRJNA285788 2019-02-11
187 red paper wasp Polistes canadensis GCF_001313835.1_ASM131383v1 SAMN02869711 PRJNA253269 2015-10-13
188 redheaded pine sawfly Neodiprion lecontei GCF_001263575.1_Nlec1.0 SAMN03462046 PRJNA280451 2015-08-10
189 rice weevil Sitophilus oryzae GCF_002938485.1_Soryzae_2.0 SAMN08382431 PRJNA431034 2019-09-09
190 ringlet Maniola hyperantus GCF_902806685.1_iAphHyp1.1 SAMEA994723 PRJEB36756 2020-02-22
191 roundworm Caenorhabditis elegans GCF_000002985.6_WBcel235 SAMEA3138177 PRJNA13758 2013-02-07
192 Russian wheat aphid Diuraphis noxia GCF_001186385.1_Dnoxia_1.0 SAMN02693874 PRJNA233413 2015-07-23
193 sea anemones Exaiptasia pallida GCF_001417965.1_Aiptasia_genome_1.1 SAMN03839803 PRJNA261862 2015-10-28
194 segmented worms Helobdella robusta GCF_000326865.1_Helobdella_robusta_v1.0 SAMN02769625 PRJNA175704 2012-12-20
195 small hive beetle Aethina tumida GCF_001937115.1_Atum_1.0 SAMN06036204 PRJNA256171 2017-01-05
196 snowberry fruit fly Rhagoletis zephyria GCF_001687245.1_Rhagoletis_zephyria_1.0 SAMN04977950 PRJNA321204 2016-07-19
197 soft corals Dendronephthya gigantea GCF_004324835.1_DenGig_1.0 SAMN10516674 PRJNA507923 2019-03-04
198 Southeast Asian liver fluke Opisthorchis viverrini GCF_000715545.1_OpiViv1.0 SAMN00996407 PRJNA222628 2014-07-09
199 southern cattle tick Rhipicephalus microplus GCF_013339725.1_ASM1333972v1 SAMN14941061 PRJNA633311 2020-06-16
200 southern house mosquito Culex quinquefasciatus GCF_015732765.1_VPISU_Cqui_1.0_pri_paternal SAMN15480861 PRJNA644878 2020-12-04
201 speckled wood butterfly Pararge aegeria GCF_905163445.1_ilParAegt1.1 SAMEA7532732 PRJEB42039 2021-01-28
202 spiders S.dumicola Stegodyphus dumicola GCF_010614865.1_ASM1061486v1 SAMN13619660 PRJNA510316 2020-02-14
203 sponges A.queenslandica Amphimedon queenslandica GCF_000090795.1_v1.0 SAMN02743868 PRJNA39517 2010-05-28
204 springtails F.candida Folsomia candida GCF_002217175.1_ASM221717v1 SAMN04196550 PRJNA299291 2017-07-12
205 squinting bush brown Bicyclus anynana GCF_900239965.1_Bicyclus_anynana_v1.2 SAMEA3639938 PRJEB8426 2018-01-02
206 stable fly Stomoxys calcitrans GCF_001015335.1_Stomoxys_calcitrans-1.0.1 SAMN03486548 PRJNA188117 2015-05-31
207 stalked seq squirt Styela clava GCF_013122585.1_ASM1312258v2 SAMN10977492 PRJNA523448 2021-02-02
208 starlet sea anemone Nematostella vectensis GCF_000209225.1_ASM20922v1 SAMN02953687 PRJNA12581 2007-08-22
209 stony coral A.digitifera Acropora digitifera GCF_000222465.1_Adig_1.1 SAMD00004206 PRJDA67425 2016-01-15
210 stony coral A.millepora Acropora millepora GCF_004143615.1_amil_sf_1.1 SAMN09287627 PRJNA473876 2019-02-06
211 stony coral O.faveolata Orbicella faveolata GCF_002042975.1_ofav_dov_v1 SAMN06562666 PRJNA378841 2017-03-20
212 stony coral P.damicornis Pocillopora damicornis GCF_003704095.1_ASM370409v1 SAMN09007954 PRJNA454489 2018-10-31
213 stony coral S.pistillata Stylophora pistillata GCF_002571385.1_Stylophora_pistillata_v1 SAMN03491624 PRJNA281535 2017-10-17
214 swede midge Contarinia nasturtii GCF_009176525.2_AAFC_CNas_1.1 SAMN12743477 PRJNA565389 2019-10-18
215 sweet potato whitefly Bemisia tabaci GCF_001854935.1_ASM185493v1 SAMN04500967 PRJNA312470 2016-10-26
216 termite C.secundus Cryptotermes secundus GCF_002891405.2_Csec_1.0 SAMN06690155 PRJNA381866 2018-01-17
217 termite Z.nevadensis Zootermopsis nevadensis GCF_000696155.1_ZooNev1.0 SAMN02146280 PRJNA203242 2014-07-22
218 thrips T.palmi Thrips palmi GCF_012932325.1_TpBJ-2018v1 SAMN14133010 PRJNA607431 2020-04-29
219 tick D.silvarum Dermacentor silvarum GCF_013339745.1_ASM1333974v1 SAMN14941059 PRJNA633311 2020-06-16
220 tobacco hornworm Manduca sexta GCF_014839805.1_JHU_Msex_v1.0 SAMN15881793 PRJNA658700 2020-10-02
221 tsetse fly Glossina fuscipes GCF_014805625.1_Yale_Gfus_2 SAMN13613662 PRJNA596165 2020-09-30
222 two-spotted spider mite Tetranychus urticae GCF_000239435.1_ASM23943v1 SAMEA2272276 PRJEA71041 2011-12-20
223 vase tunicate Ciona intestinalis GCF_000224145.3_KH n/a PRJDA65419 2013-09-17
224 wasp B.treatae Belonocnema treatae GCF_010883055.1_B_treatae_v1 SAMN13905343 PRJNA602724 2020-02-21
225 wasp C.floridanum Copidosoma floridanum GCF_000648655.2_Cflo_2.0 SAMN02265491 PRJNA171748 2017-12-12
226 wasp C.insularis Chelonus insularis GCF_013357705.1_ASM1335770v1 SAMN14571904 PRJNA624215 2020-06-17
227 wasp C.solmsi marchali Ceratosolen solmsi marchali GCF_000503995.1_CerSol_1.0 SAMN02953852 PRJNA178998 2013-12-04
228 wasp D.alloeum Diachasma alloeum GCF_001412515.2_Dall2.0 SAMN03701895 PRJNA284396 2019-03-06
229 wasp F.arisanus Fopius arisanus GCF_000806365.1_ASM80636v1 SAMN03083650 PRJNA258104 2014-12-23
230 wasp M.demolitor Microplitis demolitor GCF_000572035.2_Mdem2 SAMN02708865 PRJNA195937 2015-10-07
231 wasp T.pretiosum Trichogramma pretiosum GCF_000599845.2_Tpre_2.0 SAMN02439301 PRJNA168121 2017-12-15
232 western corn rootworm Diabrotica virgifera virgifera GCF_003013835.1_Dvir_v2.0 SAMN08631342 PRJNA432972 2018-10-15
233 western flower thrips Frankliniella occidentalis GCF_000697945.2_Focc_2.1 SAMN02303501 PRJNA203209 2017-12-15
234 western predatory mite Galendromus occidentalis GCF_000255335.1_Mocc_1.0 SAMN00849407 PRJNA62309 2012-03-27
235 wheat stem sawfly Cephus cinctus GCF_000341935.1_Ccin1 SAMN02905554 PRJNA168335 2014-07-09
236 wild silkworm Bombyx mandarina GCF_003987935.1_ASM398793v1 SAMN08782053 PRJNA445374 2018-12-31
237 yellow fever mosquito Aedes aegypti GCF_002204515.2_AaegL5.0 SAMN07177802 PRJNA318737 2017-06-22
238 yellow sugarcane aphid Sipha flava GCF_003268045.1_YSA_version1 SAMN09230380 PRJNA472250 2018-06-26
239 Yesso scallop Mizuhopecten yessoensis GCF_002113885.1_ASM211388v2 SAMN03013375 PRJNA259405 2017-06-12

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 31 assemblies assembly stats track stats
Mammals 133 assemblies assembly stats track stats
Birds 80 assemblies assembly stats track stats
Fishes 110 assemblies assembly stats track stats
other vertebrates 42 assemblies assembly stats track stats
Invertebrates 239 assemblies assembly stats track stats
Plants 132 assemblies assembly stats track stats
Fungi 355 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 210 assemblies assembly stats track stats
legacy/superseded 23 assemblies assembly stats track stats