Legacy Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 aardvark (BS58 2019 Broad) Orycteropus afer GCA_004365145.1_OryAfe_v1_BIUU 2,675,444 4,687,958,587 15,429 1,542,900 59.66
2 African clawed frog (2016) Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 108,033 2,718,433,805 216,028 309,709,018 35.96
3 African savanna elephant (2009 genbank) Loxodonta africana GCA_000001905.1_Loxafr3.0 2,352 3,196,738,035 93,514 78,195,493 56.42
4 alpaca (2015 BGI) Vicugna pacos huacaya GCA_000767525.1_Vi_pacos_V1.0 52,275 2,013,701,362 23,458 12,540,013 36.21
5 American beaver (US014 2019 Broad) Castor canadensis GCA_004027675.1_CasCan_v1_BIUU 832,147 2,761,481,163 5,769 576,900 34.58
6 American bison (2014 genbank) Bison bison bison GCA_000754665.1_Bison_UMD1.0 450,181 2,953,606,000 341,984 195,767,988 44.53
7 American pika 3.0 (2012 Broad genbank) Ochotona princeps GCA_000292845.1_OchPri3.0 10,419 2,229,819,235 122,542 285,847,846 26.73
8 Amur tiger (TaeGuk 2013 genbank) Panthera tigris altaica GCA_000464555.1_PanTig1.0 1,478 2,391,065,193 155,553 58,232,500 41.50
9 Arabian camel (2014 genbank) Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 32,572 2,004,047,047 72,775 22,596,073 34.42
10 Arctic fox (US066 2019 Broad) Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU 1,263,345 2,688,561,625 9,604 960,400 45.01
11 ass (Maral har 2015 genbank) Equus asinus GCA_001305755.1_ASM130575v1 2,166 2,391,034,547 69,593 33,114,414 41.13
12 Atlantic herring (v1) Clupea harengus GCF_900700415.1_Ch_v2.0.2 27 725,686,888 1,963 859,396 32.28
13 B.malayi (v3 2008 agent of lymphatic filariasis) Brugia malayi GCF_000002995.3_ASM299v2 24,286 93,659,149 58,744 6,589,628 33.64
14 Bactrian camel (Alxa 2014 genbank) Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0 35,454 1,992,646,609 31,980 13,666,687 34.66
15 barn owl BGI_N341 (2014) Tyto alba GCF_000687205.1_ASM68720v1 62,122 1,120,143,088 109,223 8,845,233 18.44
16 barn owl (2020) Tyto alba alba GCF_902150015.1_genome_assembly_l500 21,504 1,219,187,741 177,340 9,579,996 19.60
17 black-legged tick (U.Maryland v1 2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi 2,977 2,296,047,215 0 0 43.15
18 black snub-nosed monkey genbank Rhinopithecus bieti GCA_001698545.1_ASM169854v1 105,030 2,977,058,190 149,843 175,194,759 47.65
19 Bolivian squirrel monkey (2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 2,686 2,608,588,537 148,728 131,440,969 44.02
20 brown bear (v1 2018) Ursus arctos horribilis GCF_003584765.1_ASM358476v1 6,262 2,327,475,088 17,380 16,213,257 40.61
21 California sea lion (BS06 2019 Broad) Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU 571,996 2,519,860,747 10,276 1,027,600 44.02
22 Cape golden mole (BS56 2019 Broad) Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU 3,428,078 4,750,461,421 4,876 487,600 58.19
23 cassava (v6 AM560-2 2016 DOE) Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 2,020 582,278,977 37,896 86,649,479 42.35
24 cattle (Hereford 2015) Bos taurus GCA_000003205.6_Btau_5.0.1 3,143 2,724,980,740 41,517 11,951,885 49.04
25 cheetah (AJU 981 2015) Acinonyx jubatus GCA_001443585.1_aciJub1 14,382 2,372,536,860 183,260 42,058,837 41.79
26 chimpanzee genbank Pan troglodytes GCA_002880755.3_Clint_PTRv2 4,344 3,024,031,013 693 30,871,862 53.31
27 China rose (Old Blush v1 2018) Rosa chinensis GCF_002994745.1_RchiOBHm-V2 45 513,854,168 33 3,300 35.16
28 Chinese hamster (17A/GY CHO 2018) Cricetulus griseus GCF_003668045.1_CriGri-PICR 1,830 2,368,906,908 4,356 2,853,013 32.76
29 Chinese pangolin (MPE899 2014 WashU) Manis pentadactyla GCA_000738955.1_M_pentadactyla-1.1.1 92,769 2,204,724,663 257,424 205,794,437 31.28
30 common bottlenose dolphin (MMES2002162SC 2016 genbank) Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1 2,647 2,132,499,883 114,003 12,216,051 43.66
31 common carp (2014) Cyprinus carpio GCF_000951615.1_common_carp_genome 9,378 1,713,658,011 57,940 43,277,959 37.43
32 common cuckoo (BGI 2014) Cuculus canorus GCF_000709325.1_ASM70932v1 14,930 1,153,894,225 56,977 27,473,416 19.87
33 common house spider (v2 2017) Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 16,533 1,445,396,121 247,378 266,491,055 40.32
34 common vampire bat (DRU21DN04 2018 genbank) Desmodus rotundus GCA_002940915.2_ASM294091v2 29,800 2,063,791,738 54,308 45,952,385 29.29
35 Coquerel's sifaka 6110/Marcella (2015 genbank) Propithecus coquereli GCA_000956105.1_Pcoq_1.0 22,538 2,798,135,037 276,544 714,387,616 29.68
36 crab-eating macaque WashU 2013 genbank Macaca fascicularis GCA_000364345.1_Macaca_fascicularis_5.0 7,600 2,946,827,162 80,474 142,977,352 48.92
37 crab-eating macaque WashU 2013 refseq Macaca fascicularis GCF_000364345.1_Macaca_fascicularis_5.0 7,601 2,946,843,737 80,474 142,977,352 48.77
38 degu (3935 2012 genbank) Octodon degus GCA_000260255.1_OctDeg1.0 7,133 2,995,866,140 252,770 469,628,236 29.31
39 dog (BS72 2019 Broad) Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU 656,742 2,544,127,025 10,428 1,042,800 45.44
40 domestic ferret (Sable ID 1420 FGSC 2011) Mustela putorius furo GCF_000215625.1_MusPutFur1.0 7,742 2,410,774,536 109,700 132,851,443 37.00
41 domestic guinea pig (2N 2008 genbank) Cavia porcellus GCA_000151735.1_Cavpor3.0 3,143 2,723,202,840 58,460 59,849,908 38.03
42 downy woodpecker (BGI 2014) Picoides pubescens GCF_000699005.1_ASM69900v1 31,254 1,167,323,935 96,471 43,403,938 27.85
43 Egyptian rousette (US006 2019 Broad) Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU 221,754 1,972,131,931 4,332 433,200 32.69
44 elephant shark (2013) Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 21,204 974,498,586 46,232 37,545,143 36.81
45 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 216 2,297,765,997 872 6,026,660 32.43
46 Florida manatee (Lorelei 2012 genbank) Trichechus manatus latirostris GCA_000243295.1_TriManLat1.0 6,322 3,103,791,524 160,167 334,708,729 38.47
47 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 8,123 165,709,965 5,400 3,112,072 24.05
48 fly D.yakuba (v1 2021) Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 54 147,899,151 11 1,100 23.58
49 giant panda Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 81,467 2,299,509,015 119,126 54,196,184 39.14
50 goat (San Clemente 2016 USDA genbank) Capra hircus GCA_001704415.1_ARS1 29,906 2,922,796,603 790 39,279 50.62
51 golden hamster (Baylor 2013 genbank) Mesocricetus auratus GCA_000349665.1_MesAur1.0 21,483 2,504,908,775 216,216 428,748,785 24.30
52 golden snub-nosed monkey (2014 Novogene) Rhinopithecus roxellana GCA_000769185.1_Rrox_v1 135,513 2,899,551,855 61,291 43,508,254 50.65
53 gray mouse lemur genbank Microcebus murinus GCA_000165445.3_Mmur_3.0 7,677 2,487,392,024 43,363 101,087,221 39.97
54 great roundleaf bat (ML-2016 2016 genbank) Hipposideros armiger GCA_001890085.1_ASM189008v1 7,570 2,236,564,388 172,751 281,788,372 28.05
55 greater mouse-eared bat (2019 Broad) Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU 1,045,197 2,294,472,406 8,133 813,300 39.02
56 green algae C.reinhardtii CC-503 cw92 (v1 2007) Chlamydomonas reinhardtii GCF_000002595.1_v3.0 1,558 120,404,952 10,425 14,994,990 30.46
57 green monkey 1994-021 (2014 genbank) Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1 2,003 2,789,639,778 178,925 37,655,314 49.58
58 green sea turtle (BGI 2013) Chelonia mydas GCF_000344595.1_CheMyd_1.0 140,023 2,208,410,377 134,344 98,028,380 28.33
59 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri 99 2,134,593,249 294 11,959,915 31.97
60 Hawaiian monk seal (2017 Johns Hopkins U) Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 7,872 2,400,839,308 38,833 53,716,773 42.35
61 hooded crow (2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 113 1,042,281,180 27,795 30,616,787 18.24
62 horse (Twilight 2007 genbank) Equus caballus GCA_000002305.1_EquCab2.0 9,636 2,474,912,402 45,680 46,138,889 44.34
63 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 239 2,818,974,548 904 79,435,853 43.43
64 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA 8,603 779,469,774 51,440 41,237,672 33.31
65 Jamaican fruit-eating bat (US092 2019 Broad) Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU 794,376 2,424,784,351 4,324 432,400 34.14
66 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 2,012 927,656,957 11,601 10,397,704 19.88
67 leatherback sea turtle (v3 2020) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 40 2,164,762,090 667 5,594,612 34.21
68 lesser Egyptian jerboa (JJ0015 2012 genbank) Jaculus jaculus GCA_000280705.1_JacJac1.0 10,895 2,835,226,221 326,464 364,982,898 33.98
69 lettuce (Salinas v1 2018) Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 11,453 2,384,188,817 350,251 174,654,477 53.12
70 leopard (Maewha 2016 genbank) Panthera pardus GCA_001857705.1_PanPar1.0 50,376 2,578,002,243 214,953 99,153,465 41.28
71 Ma's night monkey genbank Aotus nancymaae GCA_000952055.2_Anan_2.0 28,921 2,861,668,348 83,929 147,245,327 45.30
72 Malayan pangolin (MP_PG03-UM 2016 genbank) Manis javanica GCA_001685135.1_ManJav1.0 80,669 2,547,379,330 984,656 198,861,917 32.47
73 malo sina (v1 2012) Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b 2,491 259,907,595 20,693 17,431,658 24.13
74 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 3,073 680,366,784 29,388 38,533,415 27.35
75 meerkat (BS45 2019 Broad) Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU 349,868 2,471,813,441 4,153 415,300 40.76
76 minke whale (2013 genbank) Balaenoptera acutorostrata scammoni GCA_000493695.1_BalAcu1.0 10,775 2,431,671,281 173,296 145,030,652 39.76
77 Mongolian gerbil (US013 2019 Broad) Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU 785,187 2,637,041,433 11,139 1,113,900 39.32
78 naked mole-rat (NMR 29 2012 genbank) Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0 4,228 2,618,188,253 110,424 303,433,536 28.99
79 narwhal (BS41 2019 Broad) Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU 644,873 2,472,545,502 8,600 860,000 44.83
80 New South Wales waratah (AGSP 2013) Amborella trichopoda GCF_000471905.2_AMTR1.0 5,746 706,495,326 39,556 38,113,750 36.08
81 nine-banded armadillo (3-136 2012 Baylor genbank) Dasypus novemcinctus GCA_000208655.2_Dasnov3.0 46,558 3,631,505,655 268,442 331,640,683 44.64
82 northern white-cheeked gibbon (2012 GGSC) Nomascus leucogenys GCA_000146795.3_Nleu_3.0 17,492 2,962,077,449 180,468 205,468,402 48.35
83 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 176 2,647,915,728 581 21,334,956 44.34
84 olive baboon (2017 HGSC RefSeq) Papio anubis GCF_000264685.3_Panu_3.0 63,235 2,959,373,024 58,981 22,371,497 52.12
85 olive baboon (2017 HGSC genbank) Papio anubis GCA_000264685.2_Panu_3.0 63,234 2,959,356,508 58,981 22,371,497 52.44
86 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 1,313 900,477,767 94 24,999 36.36
87 platypus (v1 2019) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 305 1,858,552,590 522 15,159,818 50.97
88 polar bear (Baiyulong BGI 2014 genbank) Ursus maritimus GCA_000687225.1_UrsMar_1.0 23,818 2,301,362,327 110,343 38,357,410 40.32
89 Przewalski's horse (Burgud 2014 genbank) Equus przewalskii GCA_000696695.1_Burgud 53,096 2,395,937,679 80,963 21,135,449 41.10
90 puma (SC36_Marlon 2018 genbank) Puma concolor GCA_003327715.1_PumCon1.0 2,174 2,432,949,531 178,992 114,069,938 40.74
91 pygmy chimpanzee (Ulindi genbank 2015) Pan paniscus GCA_000258655.2_panpan1.1 10,274 3,286,643,938 156,797 560,753,890 42.26
92 rabbit (Thorbecke 2009 Broad genbank) Oryctolagus cuniculus GCA_000003625.1_OryCun2.0 3,241 2,737,473,256 80,789 133,467,217 42.51
93 Rhesus monkey (2015 Baylor) Macaca mulatta GCA_000772875.3_Mmul_8.0.1 284,727 3,236,207,768 64,538 94,132,579 53.08
94 rifleman (BGI 2014) Acanthisitta chloris GCF_000695815.1_ASM69581v1 53,875 1,035,876,403 66,437 4,778,007 18.37
95 ring-tailed lemur BS26 Broad 2019 Lemur catta GCA_004024665.1_LemCat_v1_BIUU 575,427 2,298,449,872 4,599 459,900 39.29
96 Rio pearlfish (Nwh7 v1 2020) Nematolebias whitei GCF_014905685.1_NemWhi1 18,998 1,218,316,901 100,521 97,663,390 42.85
97 Ryukyu mouse (2017 EBI genbank) Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1 3,161 2,553,105,128 306,650 280,223,414 35.76
98 sea otter (GAN:26980312 2017 genbank) Enhydra lutris kenyoni GCA_002288905.2_ASM228890v2 6,767 2,455,089,215 23,134 29,682,816 40.96
99 Siamese fighting fish (v2 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
100 silvery gibbon Hylobates moloch GCF_009828535.1_HMol 18,392 2,340,327,933 18,567 42,111,658 49.74
101 southern white rhinoceros (SDZICR_KB13650 2012 genbank) Ceratotherium simum simum GCA_000283155.1_CerSimSim1.0 3,086 2,464,350,348 54,737 97,509,168 37.80
102 soybean (US DOE JGI-PGF v1 2018) Glycine max GCF_000004515.5_Glycine_max_v2.1 1,192 979,046,046 15,995 23,113,809 45.31
103 Sumatran orangutan (2018 genbank) Pongo abelii GCA_002880775.3_Susie_PABv2 5,260 3,065,035,716 553 21,607,691 54.33
104 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 35,974 3,174,693,010 201,403 243,153,308 39.48
105 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 12,483 2,478,393,770 141,005 167,333,470 33.26
106 Ugandan red Colobus Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 47,449 3,038,007,327 63,620 88,304,875 50.19
107 Upper Galilee mountains blind mole rat (#2095 2014 genbank) Nannospalax galili GCA_000622305.1_S.galili_v1.0 154,975 3,061,408,210 201,121 147,976,214 36.23
108 valley oak (v3.0 2019) Quercus lobata GCF_001633185.1_ValleyOak3.0 2,010 846,070,421 1,674 1,928,049 37.85
109 water buffalo (Mediterranean 2013) Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0 366,982 2,836,150,610 263,385 74,388,041 46.13
110 Weddell seal (WS11-02 2013 genbank) Leptonychotes weddellii GCA_000349705.1_LepWed1.0 16,710 3,156,886,159 152,836 933,738,633 29.40
111 western European hedgehog (2012 genbank) Erinaceus europaeus GCA_000296755.1_EriEur2.0 5,802 2,715,703,478 219,764 382,647,390 42.03
112 western lowland gorilla (Susie 2016) Gorilla gorilla gorilla GCA_900006655.3_Susie3 15,297 3,084,595,669 768 10,991,312 50.19
113 western painted turtle (v303 2014) Chrysemys picta bellii GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 78,595 2,365,766,571 183,744 192,562,473 28.95
114 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 1,763 2,474,071,336 79 18,851 33.02
115 white-tailed deer (Pink-7 2017 genbank) Odocoileus virginianus texanus GCA_002102435.1_Ovir.te_1.0 17,025 2,380,489,210 107,030 21,568,155 40.94
116 white-tufted-ear marmoset (CJ-08-46 2017) Callithrix jacchus GCA_002754865.1_ASM275486v1 39,944 2,845,375,248 48,495 9,511,100 48.71
117 white-tufted-ear marmoset (2010 Wash U) Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 14,205 2,914,958,544 187,214 162,452,744 45.93
118 white-tufted-ear marmoset (cj1700 genbank) Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 962 2,889,579,754 370 37,607,402 48.82
119 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 3,744 1,110,963,465 102 38,956 20.58
120 woodchuck Marmota monax GCA_901343595.1_MONAX5 48,511 2,625,891,882 57,045 74,045,625 32.84
121 Yangtze finless porpoise (v1 2018) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 13,699 2,284,628,084 52,647 16,346,815 41.77
122 Yangtze River dolphin (BGI 2013 genbank) Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1 30,712 2,429,195,737 124,797 32,195,939 43.55
123 yellow-bellied marmot Marmota flaviventris GCF_003676075.1_ASM367607v1 31,149 2,576,929,359 38,354 56,254,325 32.75
124 zebra finch (v1 2019) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
125 zebu cattle (Nelore 2014 genbank) Bos indicus GCA_000247795.2_Bos_indicus_1.0 31 2,673,949,103 6,941,272 204,955,425 43.27
TOTALS:total assembly count 125 17,362,051 279,761,669,116 18,378,175 12,135,569,686  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 49 assemblies assembly stats track stats
Mammals 276 assemblies assembly stats track stats
Birds 112 assemblies assembly stats track stats
Fishes 128 assemblies assembly stats track stats
other vertebrates 46 assemblies assembly stats track stats
Invertebrates 396 assemblies assembly stats track stats
Plants 146 assemblies assembly stats track stats
Fungi 415 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 233 assemblies assembly stats track stats
legacy/superseded 125 assemblies assembly stats track stats