Legacy Genomes assembly hubs, assembly statistics
Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.
Data resource links
NOTE:
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The
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the genome browser.
| count |
common name
link to genome browser |
scientific name
and data download |
NCBI assembly |
sequence
count | genome size
nucleotides |
gap
count | unknown bases
(gap size sum) | masking
percent |
|---|
| 1 |
Bolivian squirrel monkey (2011) |
Saimiri boliviensis boliviensis |
GCF_000235385.1_SaiBol1.0 |
2,686 |
2,608,588,537 |
148,728 |
131,440,969 |
44.02 |
| 2 |
Chinese hamster |
Cricetulus griseus |
GCF_003668045.1_CriGri-PICR |
1,830 |
2,368,906,908 |
4,356 |
2,853,013 |
32.76 |
| 3 |
fly D.yakuba (2018) |
Drosophila yakuba |
GCF_000005975.2_dyak_caf1 |
8,123 |
165,709,965 |
5,400 |
3,112,072 |
24.05 |
| 4 |
giant panda |
Ailuropoda melanoleuca |
GCF_000004335.2_AilMel_1.0 |
81,467 |
2,299,509,015 |
119,126 |
54,196,184 |
39.14 |
| 5 |
hooded crow (2017) |
Corvus cornix cornix |
GCF_000738735.2_ASM73873v2 |
113 |
1,042,281,180 |
27,795 |
30,616,787 |
18.24 |
| 6 |
house mouse |
Mus musculus |
GCF_000001635.26_GRCm38.p6 |
239 |
2,818,974,548 |
904 |
79,435,853 |
43.43 |
| 7 |
Indian medaka |
Oryzias melastigma |
GCF_002922805.1_Om_v0.7.RACA |
8,603 |
779,469,774 |
51,440 |
41,237,672 |
33.31 |
| 8 |
Japanese quail |
Coturnix japonica |
GCF_001577835.1_Coturnix_japonica_2.0 |
2,012 |
927,656,957 |
11,601 |
10,397,704 |
19.88 |
| 9 |
mangrove rivulus |
Kryptolebias marmoratus |
GCF_001649575.1_ASM164957v1 |
3,073 |
680,366,784 |
29,388 |
38,533,415 |
27.35 |
| 10 |
Norway rat BN7 genbank |
Rattus norvegicus |
GCA_015227675.2_mRatBN7.2 |
176 |
2,647,915,728 |
581 |
21,334,956 |
44.34 |
| 11 |
olive baboon |
Papio anubis |
GCF_000264685.3_Panu_3.0 |
63,235 |
2,959,373,024 |
58,981 |
22,371,497 |
52.12 |
| 12 |
pike-perch |
Sander lucioperca |
GCF_008315115.1_SLUC_FBN_1 |
1,313 |
900,477,767 |
94 |
24,999 |
36.36 |
| 13 |
platypus (2019 v1) |
Ornithorhynchus anatinus |
GCF_004115215.1_mOrnAna1.p.v1 |
305 |
1,858,552,590 |
522 |
15,159,818 |
50.97 |
| 14 |
silvery gibbon |
Hylobates moloch |
GCF_009828535.1_HMol |
18,392 |
2,340,327,933 |
18,567 |
42,111,658 |
49.74 |
| 15 |
Tasmanian devil |
Sarcophilus harrisii |
GCF_000189315.1_Devil_ref_v7.0 |
35,974 |
3,174,693,010 |
201,403 |
243,153,308 |
39.48 |
| 16 |
thirteen-lined ground squirrel (2011) |
Ictidomys tridecemlineatus |
GCF_000236235.1_SpeTri2.0 |
12,483 |
2,478,393,770 |
141,005 |
167,333,470 |
33.26 |
| 17 |
Ugandan red Colobus |
Piliocolobus tephrosceles |
GCF_002776525.2_ASM277652v2 |
47,449 |
3,038,007,327 |
63,620 |
88,304,875 |
50.19 |
| 18 |
white-footed mouse |
Peromyscus leucopus |
GCF_004664715.1_Pero_0.1 |
1,763 |
2,474,071,336 |
79 |
18,851 |
33.02 |
| 19 |
white-tufted-ear marmoset |
Callithrix jacchus |
GCF_000004665.1_Callithrix_jacchus-3.2 |
14,205 |
2,914,958,544 |
187,214 |
162,452,744 |
45.93 |
| 20 |
white-tufted-ear marmoset |
Callithrix jacchus |
GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 |
962 |
2,889,579,754 |
370 |
37,607,402 |
48.82 |
| 21 |
wire-tailed manakin (2018) |
Pipra filicauda |
GCF_003945595.1_ASM394559v1 |
3,744 |
1,110,963,465 |
102 |
38,956 |
20.58 |
| 22 |
woodchuck |
Marmota monax |
GCA_901343595.1_MONAX5 |
48,511 |
2,625,891,882 |
57,045 |
74,045,625 |
32.84 |
| 23 |
yellow-bellied marmot |
Marmota flaviventris |
GCF_003676075.1_ASM367607v1 |
31,149 |
2,576,929,359 |
38,354 |
56,254,325 |
32.75 |
| TOTALS: | total assembly count 23 |
387,807 |
47,681,599,157 |
1,166,675 |
1,322,036,153 |
|
|---|