Legacy Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Bolivian squirrel monkey (2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 2,686 2,608,588,537 148,728 131,440,969 44.02
2 Chinese hamster Cricetulus griseus GCF_003668045.1_CriGri-PICR 1,830 2,368,906,908 4,356 2,853,013 32.76
3 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 8,123 165,709,965 5,400 3,112,072 24.05
4 giant panda Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 81,467 2,299,509,015 119,126 54,196,184 39.14
5 hooded crow (2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 113 1,042,281,180 27,795 30,616,787 18.24
6 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 239 2,818,974,548 904 79,435,853 43.43
7 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA 8,603 779,469,774 51,440 41,237,672 33.31
8 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 2,012 927,656,957 11,601 10,397,704 19.88
9 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 3,073 680,366,784 29,388 38,533,415 27.35
10 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 176 2,647,915,728 581 21,334,956 44.34
11 olive baboon Papio anubis GCF_000264685.3_Panu_3.0 63,235 2,959,373,024 58,981 22,371,497 52.12
12 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 1,313 900,477,767 94 24,999 36.36
13 platypus (2019 v1) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 305 1,858,552,590 522 15,159,818 50.97
14 silvery gibbon Hylobates moloch GCF_009828535.1_HMol 18,392 2,340,327,933 18,567 42,111,658 49.74
15 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 35,974 3,174,693,010 201,403 243,153,308 39.48
16 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 12,483 2,478,393,770 141,005 167,333,470 33.26
17 Ugandan red Colobus Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 47,449 3,038,007,327 63,620 88,304,875 50.19
18 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 1,763 2,474,071,336 79 18,851 33.02
19 white-tufted-ear marmoset Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 14,205 2,914,958,544 187,214 162,452,744 45.93
20 white-tufted-ear marmoset Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 962 2,889,579,754 370 37,607,402 48.82
21 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 3,744 1,110,963,465 102 38,956 20.58
22 woodchuck Marmota monax GCA_901343595.1_MONAX5 48,511 2,625,891,882 57,045 74,045,625 32.84
23 yellow-bellied marmot Marmota flaviventris GCF_003676075.1_ASM367607v1 31,149 2,576,929,359 38,354 56,254,325 32.75
TOTALS:total assembly count 23 387,807 47,681,599,157 1,166,675 1,322,036,153  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 31 assemblies assembly stats track stats
Mammals 132 assemblies assembly stats track stats
Birds 80 assemblies assembly stats track stats
Fishes 110 assemblies assembly stats track stats
other vertebrates 41 assemblies assembly stats track stats
Invertebrates 239 assemblies assembly stats track stats
Plants 132 assemblies assembly stats track stats
Fungi 355 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 189 assemblies assembly stats track stats
legacy/superseded 23 assemblies assembly stats track stats