Legacy Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 aardvark (BS58 2019 Broad) Orycteropus afer GCA_004365145.1_OryAfe_v1_BIUU 2,675,444 4,687,958,587 15,429 1,542,900 59.66
2 Aeolian wall lizard (La Canna islet primary hap 2022 genbank) Podarcis raffonei GCA_027172205.1_rPodRaf1.pri 27 1,513,131,503 30 23,116 38.30
3 African clawed frog (2016) Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 108,033 2,718,433,805 216,028 309,709,018 35.96
4 African grass rat (v1 paternal X 2020 genbank) Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X 1,596 2,496,777,707 1,624 20,289,527 37.17
5 African malaria mosquito (PEST 2006) Anopheles gambiae str. PEST GCA_000005575.1_AgamP3 8,040 264,958,941 8,735 12,572,948 21.31
6 African savanna elephant (2009 genbank) Loxodonta africana GCA_000001905.1_Loxafr3.0 2,352 3,196,738,035 93,514 78,195,493 56.42
7 alkali bee (v1.2 Touchet_males 2018) Nomia melanderi GCF_003710045.1_USU_Nmel_1.2 95,883 325,881,203 14,031 18,226,823 27.52
8 alpaca (2015 BGI) Vicugna pacos huacaya GCA_000767525.1_Vi_pacos_V1.0 52,275 2,013,701,362 23,458 12,540,013 36.21
9 alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U) Vicugna pacos GCF_000164845.3_VicPac3.1 77,390 2,119,617,549 166,280 88,419,281 34.74
10 Alpine marmot (2015) Marmota marmota marmota GCF_001458135.1_marMar2.1 14,543 2,510,587,379 89,362 98,898,735 30.29
11 American alligator (2023 genbank) Alligator mississippiensis GCA_030867065.1_rAllMis1 670 2,373,280,586 136 4,475,704 43.05
12 American alligator (chrom assembly 2023 genbank) Alligator mississippiensis GCA_030867095.1_rAllMis1 194 2,346,779,227 161 16,453,847 42.90
13 American beaver (US014 2019 Broad) Castor canadensis GCA_004027675.1_CasCan_v1_BIUU 832,147 2,761,481,163 5,769 576,900 34.58
14 American bison (2014 genbank) Bison bison bison GCA_000754665.1_Bison_UMD1.0 450,181 2,953,606,000 341,984 195,767,988 44.53
15 American pika 3.0 (2012 Broad genbank) Ochotona princeps GCA_000292845.1_OchPri3.0 10,419 2,229,819,235 122,542 285,847,846 26.73
16 amphioxus (hap2 2024 genbank) Branchiostoma lanceolatum GCA_035083965.1_klBraLanc5.hap2 34 458,287,516 103 15,500 27.49
17 amphipods H.azteca (HAZT.00-mixed v2.0 2016) Hyalella azteca GCF_000764305.1_Hazt_2.0 18,000 550,885,727 23,726 2,638,611 29.03
18 Amur tiger (TaeGuk 2013 genbank) Panthera tigris altaica GCA_000464555.1_PanTig1.0 1,478 2,391,065,193 155,553 58,232,500 41.50
19 Anna's hummingbird (BGI_N300 2019 genbank) Calypte anna GCA_003957555.2_bCalAnn1_v1.p 160 1,059,706,240 429 16,096,788 20.87
20 ant C.costatus (v1 MS0001 2016) Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 15,379 300,316,566 10,626 12,782,708 35.22
21 ant N.fulva (TAMU-Nful-2015 v1.0 2019) Nylanderia fulva GCF_005281655.1_TAMU_Nfulva_1.0 2,869 375,107,333 1,076 1,829,080 43.13
22 ant T.cornetzi (Tcor2-1 v1.0 2016 BGI) Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 19,761 369,438,293 40,822 30,342,016 34.65
23 apicomplexans C.sp. chipmunk genotype I (37763 2021 genbank) Cryptosporidium sp. chipmunk genotype I GCA_004936735.2_CCh_genotype_I 50 9,052,409 10 302 20.76
24 apicomplexans E.tenella (Houghton 2013) Eimeria tenella GCA_000499545.1_ETH001 4,664 51,859,607 8,063 686,045 37.40
25 apple (Golden Delicious X9273 #13 2017 genbank) Malus domestica GCA_002114115.1_ASM211411v1 806 702,961,352 7,175 77,686,519 45.20
26 Arabian camel (2014 genbank) Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 32,572 2,004,047,047 72,775 22,596,073 34.42
27 Arctic fox (US066 2019 Broad) Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU 1,263,345 2,688,561,625 9,604 960,400 45.01
28 ascomycetes A.fischeri (v3 NRRL 181 2006) Aspergillus fischeri NRRL 181 GCF_000149645.2_ASM14964v3 376 31,665,876 90 9,000 5.98
29 ascomycetes A.nidulans (FGSC A4 2012 genbank) Aspergillus nidulans FGSC A4 GCA_000149205.2_ASM14920v2 91 30,275,969 158 174,228 4.70
30 ascomycetes A.niger CBS 513.88 (v3 2007) Aspergillus niger CBS 513.88 GCF_000002855.3_ASM285v2 20 34,006,671 662 45,182 7.73
31 ascomycetes A.rabiei (Mel4 2019) Ascochyta rabiei GCF_004011695.1_Arabiei_Me14 34 40,917,385 0 0 17.31
32 ascomycetes B.dermatitidis (ER-3 2009 genbank) Blastomyces dermatitidis ER-3 GCA_000003525.2_BD_ER3_V1 27 66,608,683 566 338,014 48.69
33 ascomycetes B.gilchristii (SLH14081 2009 genbank) Blastomyces gilchristii SLH14081 GCA_000003855.2_BD_SLH14081_V1 103 75,404,732 1,691 1,010,961 50.90
34 ascomycetes C.posadasii (C735 delta SOWgp 2009 genban) Coccidioides posadasii C735 delta SOWgp GCA_000151335.1_JCVI-cpa1-1.0 55 27,013,412 33 33 11.91
35 ascomycetes F.oxysporum (NRRL 32931 2014 genbank) Fusarium oxysporum NRRL 32931 GCA_000271745.2_FO_FOSC_3_a_V1 168 47,906,303 377 697,973 7.67
36 ascomycetes P.destructans (20631-21 2010 genbank) Pseudogymnoascus destructans 20631-21 GCA_000184105.1_Geom_destructans_V1 1,847 30,684,937 2,066 2,328,879 13.62
37 ascomycetes P.digitatum (Pd1 2012 genbank) Penicillium digitatum Pd1 GCA_000315645.2_PdigPd1_v1 54 26,082,141 516 1,168,871 6.09
38 ascomycetes P.pennisetigena (Br36 2019 genbank) Pyricularia pennisetigena GCA_004337985.1_PpBr36 108 49,117,040 1,281 295,102 20.23
39 ascomycetes P.rubens (Wisconsin 54-1255 2008 genbank) Penicillium rubens Wisconsin 54-1255 GCA_000226395.1_PenChr_Nov2007 49 32,223,735 775 19,918 5.94
40 ascomycetes R.enersibuu (CBS 393.64 2015 genbank) Rasamsonia emersonii CBS 393.64 GCA_000968595.1_ASM96859v1 862 28,248,805 76 76 10.59
41 ascomycetes S.macrospora (v2 k-hell 2012) Sordaria macrospora k-hell GCF_000182805.2_ASM18280v2 1,583 38,391,383 978 138,263 11.18
42 ascomycetes S.schenckii (1099-18 2015 genbank) Sporothrix schenckii 1099-18 GCA_000961545.1_S_schenckii_v1 16 32,375,103 57 185 13.91
43 ascomycetes T.marneffei (ATCC 18224 2008 genbank) Talaromyces marneffei ATCC 18224 GCA_000001985.1_JCVI-PMFA1-2.0 452 28,643,865 137 176,385 6.73
44 ascomycetes Z.tritici (IPO323 2011 genbank) Zymoseptoria tritici IPO323 GCA_000219625.1_MYCGR_v2.0 21 39,686,251 3 7,341 11.20
45 Asian corn borer (v1 ACB-3 2019) Ostrinia furnacalis GCF_004193835.1_ASM419383v1 7,722 437,294,469 34,722 41,449 38.75
46 Asian corn borer (v2 ACB-3 2019) Ostrinia furnacalis GCF_004193835.2_ASM419383v2 6,269 435,202,145 34,702 41,380 38.58
47 Asian swallowtail (v1 2015) Papilio xuthus GCF_000836235.1_Pxut_1.0 5,572 243,890,167 5,205 5,952,953 38.94
48 Asian tiger mosquito (C6/36 2017 genbank) Aedes albopictus GCA_001876365.2_canu_80X_arrow2.2 2,434 2,247,289,552 0 0 57.10
49 Asian tiger mosquito (v1 FPA 2019 genbank Aedes albopictus GCA_006496715.1_Aalbo_primary.1 2,196 2,538,371,206 3,359 1,679,500 57.70
50 Asian tiger mosquito (v1 FPA 2019 refseq) Aedes albopictus GCF_006496715.1_Aalbo_primary.1 2,197 2,538,387,871 3,359 1,679,500 69.82
51 Asiatic tapir (BS100 BIUU 2019) Tapirus indicus GCA_004024905.1_TapInd_v1_BIUU 280,135 2,425,203,111 4,333 433,300 39.89
52 ass (Maral har 2015 genbank) Equus asinus GCA_001305755.1_ASM130575v1 2,166 2,391,034,547 69,593 33,114,414 41.13
53 Atlantic halibut (primary hap 2019 genbank) Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri 57 596,792,676 290 3,413,390 24.17
54 Atlantic herring (v1) Clupea harengus GCF_900700415.1_Ch_v2.0.2 27 725,686,888 1,963 859,396 32.28
55 Atlantic salmon (genbank 2021) Salmo salar GCA_905237065.2_Ssal_v3.1 4,011 2,756,584,103 211 21,100 59.39
56 Atlantic stingray (hap1 2023 genbank) Hypanus sabinus GCA_030144855.1_sHypSab1.hap1 2,990 4,044,886,845 1,648 329,600 51.80
57 B.malayi (v3 2008 agent of lymphatic filariasis) Brugia malayi GCF_000002995.3_ASM299v2 24,286 93,659,149 58,744 6,589,628 33.64
58 Bactrian camel (Alxa 2014 genbank) Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0 35,454 1,992,646,609 31,980 13,666,687 34.66
59 banded archerfish (primary hap 2021 genbank) Toxotes jaculatrix GCA_017976425.1_fToxJac2.pri 96 621,503,431 98 1,137,472 28.10
60 barn owl (2020) Tyto alba alba GCF_902150015.1_genome_assembly_l500 21,504 1,219,187,741 177,340 9,579,996 19.60
61 barn owl BGI_N341 (2014) Tyto alba GCF_000687205.1_ASM68720v1 62,122 1,120,143,088 109,223 8,845,233 18.44
62 barn swallow (bHirRus1 v2 primary hap genbank 2021) Hirundo rustica GCA_015227805.2_bHirRus1.pri.v2 617 1,105,955,550 1,102 25,534,411 21.06
63 barn swallow (v2 primary hap 2021 refseq) Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 617 1,105,955,550 1,102 25,534,411 21.06
64 barn swallow (v3 primary hap 2021 genbank) Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 617 1,105,955,550 1,102 25,534,411 21.06
65 barramundi perch (ASB-BC8 2016) Lates calcarifer GCF_001640805.1_ASM164080v1 3,808 668,481,366 110 11,462 23.94
66 basidiomycetes A.bisporus (H97 2012) Agaricus bisporus var. bisporus H97 GCF_000300575.1_Agabi_varbisH97_2 29 30,233,745 225 204,967 9.93
67 basidiomycetes C.cinerea (okayama7#130 2010 genbank) Coprinopsis cinerea okayama7#130 GCA_000182895.1_CC3 68 36,192,590 33 34 7.83
68 basidiomycetes C.depauperatus (CBS 7841 2024 genbank) Cryptococcus depauperatus CBS 7841 GCA_001720195.2_ASM172019v2 8 16,179,376 0 0 8.02
69 basidiomycetes C.neoformans (JEC21 2005 genbank) Cryptococcus neoformans var. neoformans JEC21 GCA_000091045.1_ASM9104v1 14 19,051,922 85 1,860 8.44
70 basidiomycetes K.bestiolae (CBS 10118 2024 genbank) Kwoniella bestiolae CBS 10118 GCA_000512585.3_ASM51258v3 8 24,551,665 0 0 9.80
71 basidiomycetes K.bestiolae (v1 CBS 10118 2016) Kwoniella bestiolae CBS 10118 GCF_000512585.1_Cryp_best_CBS10118_V1 12 24,360,772 30 13,817 10.51
72 basidiomycetes K.dejecticola (CBS 10117 2024 genbank) Kwoniella dejecticola CBS 10117 GCA_000512565.3_ASM51256v3 11 23,932,770 0 0 8.01
73 basidiomycetes K.dejecticola (v1 CBS 10117 2016) Kwoniella dejecticola CBS 10117 GCF_000512565.1_Cryp_deje_CBS10117_V1 13 23,862,392 56 4,288 7.95
74 basidiomycetes K.mangroviensis (v1 CBS 8507 2016 refseq) Kwoniella mangroviensis CBS 8507 GCF_000507465.1_Kwon_mang_CBS8507_V2 62 22,654,511 43 62,240 10.00
75 basidiomycetes K.mangroviensis (v2 CBS 8507 2024 genbank) Kwoniella mangroviensis CBS 8507 GCA_000507465.4_ASM50746v4 4 22,796,923 0 0 10.40
76 basidiomycetes K.shandongensis (v1 CBS 12478 2019) Kwoniella shandongensis GCF_008629635.1_Kwon_shan_CBS_12478_V1 132 21,297,554 11 1,898 9.02
77 basidiomycetes M.globosa (v1 CBS 7966 2007) Malassezia globosa CBS 7966 GCF_000181695.1_ASM18169v1 67 8,958,118 22 24 4.76
78 basidiomycetes S.commune (v1 H4-8 2010) Schizophyllum commune H4-8 GCF_000143185.1_v1.0 36 38,482,026 316 551,641 11.52
79 bee C.calcarata (v1 Rehan_Ccalc_2016 2016) Ceratina calcarata GCF_001652005.1_ASM165200v1 50,565 199,927,200 19,248 16,087,928 18.41
80 bee E.mexicana (v1 0111107269 2016) Eufriesea mexicana GCF_001483705.1_ASM148370v1 187,611 596,278,454 25,039 25,250,884 46.09
81 beet (2015) Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 40,246 566,550,431 30,962 48,760,827 30.12
82 beluga whale (GAN/ISIS: 26980492/103006 v2 2017) Delphinapterus leucas GCA_002288925.2_ASM228892v2 6,971 2,358,506,062 28,398 31,726,626 43.16
83 black cottonwood (v3 Nisqually-1 2018) Populus trichocarpa GCF_000002775.4_Pop_tri_v3 1,447 434,289,848 6,871 11,192,221 36.05
84 black perch (LCO1_2020_lvr primary hap 2022 genbank) Embiotoca jacksoni GCA_022577435.1_fEmbJac1.0.p 230 634,685,148 234 23,401 28.99
85 black rhinoceros (primary hap 2021 genbank) Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur 1,075 3,005,519,209 215 1,368,861 40.15
86 black snub-nosed monkey (Rb0 v1 genbank 2016) Rhinopithecus bieti GCA_001698545.1_ASM169854v1 105,030 2,977,058,190 149,843 175,194,759 47.65
87 black snub-nosed monkey (Rb0 v1 refseq 2016) Rhinopithecus bieti GCF_001698545.1_ASM169854v1 105,031 2,977,074,741 149,843 175,194,759 47.66
88 black swan (v1 Queensland, Australia AKBS03 2020) Cygnus atratus GCF_013377495.1_Cygnus_atratus_primary_v1.0 396 1,122,279,392 0 0 21.43
89 black tiger shrimp (v1 SGIC_2016 2020) Penaeus monodon GCF_015228065.1_NSTDA_Pmon_1 26,876 2,394,347,767 1,158,725 393,564,296 49.65
90 black-legged kittiwake (bRisTri1.patW 2023 genbank) Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 716 1,353,621,101 283 786,373 26.72
91 black-legged tick (U.Maryland v1 2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi 2,977 2,296,047,215 0 0 43.15
92 black-legged tick (Wikel colony 2008 genbank) Ixodes scapularis GCA_000208615.1_JCVI_ISG_i3_1.0 369,492 1,765,382,190 201,145 376,910,010 27.04
93 blackcap (primary hap 2019 genbank) Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri 189 1,066,786,587 413 11,925,354 19.80
94 Blainville's beaked whale (primary hap 2022 genbank) Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype 73 2,683,375,131 97 700,303 41.79
95 bloodfluke planorb (v1 BB02 2013 refseq) Biomphalaria glabrata GCF_000457365.1_ASM45736v1 331,401 916,388,084 76,921 17,486,375 43.11
96 bloodfluke planorb (v2 BB02 2013 genbank) Biomphalaria glabrata GCA_000457365.2_ASM45736v2 330,021 914,943,342 76,903 17,477,263 43.13
97 blue whale (JJ_BM4_2016_0621 v2 2020) Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 130 2,380,012,384 936 25,929,252 43.78
98 blunt-snouted clingfish (v1 2019 genbank) Gouania willdenowi GCA_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
99 blunt-snouted clingfish (v1 2019 refseq) Gouania willdenowi GCF_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
100 Bolivian squirrel monkey (100643 v2.0 BCM 2021) Saimiri boliviensis boliviensis GCF_016699345.1_BCM_Sbol_2.0 1,716 2,651,399,628 1,074 11,737,674 47.71
101 Bolivian squirrel monkey (3227 Broad 2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 2,686 2,608,588,537 148,728 131,440,969 44.02
102 Bornean orangutan (v1 AG05252 alternate hap 2023 genbank) Pongo pygmaeus GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt 215 3,038,229,980 36 3,505,721 54.20
103 Bornean orangutan (v1 AG05252 primary hap 2023 refseq) Pongo pygmaeus GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri 1,554 3,249,335,160 39 4,474,152 54.36
104 boutu (BS63 2019) Inia geoffrensis GCA_004363515.1_IniGeo_v1_BIUU 1,213,610 2,596,281,358 5,072 507,200 45.87
105 Brazilian free-tailed bat (US034 2019) Tadarida brasiliensis GCA_004025005.1_TadBra_v1_BIUU 1,067,615 2,709,928,648 4,243 424,300 36.39
106 brown anole (Geneva1000 2022 genbank) Anolis sagrei ordinatus GCA_025583915.1_AnoSag2.1 3,738 1,926,425,113 114,440 31,587,590 45.00
107 brown argus (genbank 2021) Aricia agestis GCA_905147365.1_ilAriAges1.1 26 435,280,672 4 734 48.47
108 brown bear (GAN/ISIS:MIG12 v1 2018) Ursus arctos horribilis GCF_003584765.1_ASM358476v1 6,262 2,327,475,088 17,380 16,213,257 41.04
109 brown bear (v1.0 2022 WashU) Ursus arctos GCF_023065955.1_UrsArc1.0 902 2,474,258,672 215 107,500 34.05
110 brown dog tick (v1 Rsan-2018 2020) Rhipicephalus sanguineus GCF_013339695.1_ASM1333969v1 2,329 2,365,540,030 10,359 1,036,102 42.80
111 brown headed cowbird (v1.0 BHLD 08-10-18 2020) Molothrus ater GCF_012460135.1_BPBGC_Mater_1.0 413 1,087,312,585 278 156,000 21.32
112 brown planthopper (v1 BPH 2020 genbank) Nilaparvata lugens GCA_014356525.1_ASM1435652v1 7,093 1,087,807,972 4,529 452,900 47.52
113 brown planthopper (v1 BPH 2020 refseq) Nilaparvata lugens GCF_014356525.1_ASM1435652v1 7,094 1,087,825,591 4,529 452,900 47.52
114 budding yeast C.auris (6684 2015 genbank) [Candida] auris GCA_001189475.1_ASM118947v1 99 12,498,763 689 165,857 8.24
115 budding yeast C.auris (B11221 2017 genbank) [Candida] auris GCA_002775015.1_Cand_auris_B11221_V1 20 12,741,178 3 300 7.02
116 budding yeast C.lusitaniae (ATCC 42720 2009 genbank) Clavispora lusitaniae ATCC 42720 GCA_000003835.1_ASM383v1 9 12,114,892 79 34,973 8.77
117 budding yeast C.oxycetoniae (v1 CBS 10844 2022) Candida oxycetoniae GCF_023343755.1_ASM2334375v1 148 12,878,827 167 6,589 21.85
118 budding yeast K.marxianus (DMKU3-1042 2014 genbank) Kluyveromyces marxianus DMKU3-1042 GCA_001417885.1_Kmar_1.0 9 10,966,467 0 0 11.99
119 budding yeast L.elongisporus (NRRL YB-4239 2007 genbank) Lodderomyces elongisporus NRRL YB-4239 GCA_000149685.1_ASM14968v1 28 15,547,272 117 86,652 23.45
120 budding yeast N.glabratus (CBS 138 2008 genbank) Nakaseomyces glabratus GCA_000002545.2_ASM254v2 13 12,318,245 3 300 11.36
121 budding yeast Y.lipolytica (CLIB122 2004 genbank) Yarrowia lipolytica CLIB122 GCA_000002525.1_ASM252v1 6 20,502,981 28 1,171 9.80
122 budgerigar (maternal Z 2020 genbank) Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z 865 1,171,635,651 284 3,236,129 22.13
123 butterfly L.sinapis (2021 genbank) Leptidea sinapis GCA_905404315.1_ilLepSina1.1 50 685,599,024 13 2,302 51.80
124 butterfly P.napi (v1.1 genbank 2021) Pieris napi GCA_905475465.1_ilPieNapi1.1 43 319,202,574 41 4,900 42.56
125 cabbage white (genbank 2021) Pieris rapae GCA_905147795.1_ilPieRapa1.1 40 256,370,197 4 1,000 39.06
126 California condor (v1 813 2021 genbank) Gymnogyps californianus GCA_018139145.1_ASM1813914v1 542 1,240,179,868 632 316,000 20.32
127 California sea lion (BS06 2019 Broad) Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU 571,996 2,519,860,747 10,276 1,027,600 44.02
128 California sea lion (v1 2019) Zalophus californianus GCA_009762305.1_mZalCal1.pri 43 2,408,658,503 122 17,343,033 43.41
129 California two-spot octopus (v1 UCB-OBI-ISO-001 male 2015) Octopus bimaculoides GCF_001194135.1_Octopus_bimaculoides_v2_0 151,674 2,338,188,782 548,450 353,859,886 41.10
130 Canada lynx (LIC74 v1 2019) Lynx canadensis GCF_007474595.1_mLynCan4_v1.p 66 2,408,883,772 848 2,778,737 43.75
131 Cape golden mole (BS56 2019 Broad) Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU 3,428,078 4,750,461,421 4,876 487,600 58.19
132 capsicum (Zunla-1 2015 genbank) Capsicum annuum GCA_000710875.1_Pepper_Zunla_1_Ref_v1.0 1,625 2,935,215,852 107,172 94,870,520 46.17
133 Caribbean electric ray (hap1 2024 genbank) Narcine bancroftii GCA_036971445.1_sNarBan1.hap1 596 3,328,453,053 1,443 277,765 54.80
134 carmine bee-eater (2014 BGI) Merops nubicus GCF_000691845.1_ASM69184v1 53,499 1,062,961,556 50,632 4,452,950 19.28
135 cassava (v6 AM560-2 2016 DOE) Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 2,020 582,278,977 37,896 86,649,479 42.35
136 cattle (Hereford 2015) Bos taurus GCA_000003205.6_Btau_5.0.1 3,143 2,724,980,740 41,517 11,951,885 49.04
137 cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA) Bos taurus GCF_002263795.1_ARS-UCD1.2 2,211 2,715,853,792 386 28,162 49.69
138 cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA) Bos taurus GCF_002263795.2_ARS-UCD1.3 1,957 2,711,209,831 386 28,162 41.82
139 Chacoan peccary (BS18 v1 2019 Broad) Catagonus wagneri GCA_004024745.1_CatWag_v1_BIUU 1,230,162 2,593,589,281 10,534 1,053,400 43.19
140 channel bull blenny (2019 genbank) Cottoperca gobio GCA_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
141 channel catfish (USDA103 v1 2016) Ictalurus punctatus GCF_001660625.1_IpCoco_1.2 9,341 783,274,721 25,203 11,381,915 33.99
142 channel catfish (USDA103 v1.2 2019) Ictalurus punctatus GCF_001660625.2_IpCoco_1.2 9,342 821,768,289 25,285 11,805,805 33.87
143 cheetah (AJU 981 2015) Acinonyx jubatus GCA_001443585.1_aciJub1 14,382 2,372,536,860 183,260 42,058,837 41.79
144 chimney swift (M959 v1.0 2014) Chaetura pelagica GCF_000747805.1_ChaPel_1.0 19,072 1,119,188,094 65,523 45,064,234 19.72
145 chimpanzee (Clint C0471 2018 genbank) Pan troglodytes GCA_002880755.3_Clint_PTRv2 4,344 3,024,031,013 693 30,871,862 53.31
146 chimpanzee (v1 AG18354 alternate hap 2023 genbank) Pan troglodytes GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt 119 3,015,383,096 22 6,632,458 48.80
147 chimpanzee (v1 AG18354 primary hap 2023 refseq) Pan troglodytes GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri 1,471 3,225,356,997 29 3,176,996 50.12
148 China rose (Old Blush v1 2018) Rosa chinensis GCF_002994745.1_RchiOBHm-V2 45 513,854,168 33 3,300 35.16
149 Chinese hamster (17A/GY CHO 2018) Cricetulus griseus GCF_003668045.1_CriGri-PICR 1,830 2,368,906,908 4,356 2,853,013 32.29
150 Chinook salmon (v2 Ot180627B 2021 male genbank) Oncorhynchus tshawytscha GCA_018296145.1_Otsh_v2.0 7,664 2,294,842,546 2,333 231,728 55.95
151 chub mackerel (primary hap 2022 genbank) Scomber japonicus GCA_027409825.1_fScoJap1.pri 361 828,697,720 1,572 647,100 32.44
152 chuck-will's-widow (BGI_N321 v1 2014) Antrostomus carolinensis GCF_000700745.1_ASM70074v1 70,122 1,119,683,066 56,667 4,405,452 20.50
153 chytrid fungus B.dendrobatidis (v1 JAM81 2011) Batrachochytrium dendrobatidis JAM81 GCF_000203795.1_v1.0 127 24,315,081 383 184,767 12.11
154 ciliates Oxytricha trifallax (v1 JRB310 2012) Oxytricha trifallax GCA_000295675.1_oxytricha_asm_v1.1 22,363 67,158,112 1,347 1,383 25.15
155 climbing perch (v1.1 2018 refseq) Anabas testudineus GCF_900324465.1_fAnaTes1.1 70 569,722,067 292 7,669,072 21.87
156 climbing perch (v1.2 2018 genbank) Anabas testudineus GCA_900324465.2_fAnaTes1.2 50 555,641,398 266 3,606,496 21.33
157 climbing perch (v1.2 2018 refseq) Anabas testudineus GCF_900324465.2_fAnaTes1.2 51 555,658,001 266 3,606,496 21.33
158 clouded leopard (mNeoNeb1 primary hap 2023 genbank) Neofelis nebulosa GCA_028018385.1_mNeoNeb1.pri 34 2,468,361,932 181 1,363,852 34.43
159 clouded yellow (genbank 2021) Colias croceus GCA_905220415.1_ilColCroc2.1 33 324,912,214 9 3,300 42.17
160 coho salmon (150728-3 2017) Oncorhynchus kisutch GCF_002021735.1_Okis_V1 21,244 2,369,926,093 265,291 109,727,927 46.67
161 common bottlenose dolphin (maternal Y genbank 2020) Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y 362 2,378,522,214 674 6,222,516 46.05
162 common bottlenose dolphin (MMES2002162SC 2016 genbank) Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1 2,647 2,132,499,883 114,003 12,216,051 43.66
163 common brushtail (genbank 2020) Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri 212 3,359,347,793 1,796 18,696,463 40.57
164 common carp (2014) Cyprinus carpio GCF_000951615.1_common_carp_genome 9,378 1,713,658,011 57,940 43,277,959 37.43
165 common cuckoo (bCucCan1 primary hap 2021 genbank) Cuculus canorus GCA_017976375.1_bCucCan1.pri 151 1,180,156,273 296 4,922,315 21.81
166 common cuckoo (BGI 2014) Cuculus canorus GCF_000709325.1_ASM70932v1 14,930 1,153,894,225 56,977 27,473,416 19.87
167 common house spider (v2 Geottingen 2017) Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 16,533 1,445,396,121 247,378 266,491,055 40.32
168 common house spider (v3 Goettingen 2019 genbank) Parasteatoda tepidariorum GCA_000365465.3_Ptep_3.0 59,853 1,228,972,128 124,228 19,083,903 51.17
169 common limpet (v1 primary hap 2022) Patella vulgata GCF_932274485.1_xgPatVulg1.1 13 694,468,775 75 15,000 45.71
170 common sole (primary hap 2023 genbank) Solea solea GCA_958295425.1_fSolSol10.1 243 643,774,986 373 74,600 32.91
171 common swift (bApuApu2 2021 genbank) Apus apus GCA_020740795.1_bApuApu2.pri.cur 109 1,100,361,224 256 1,747,529 21.21
172 common vampire bat (v1 HL8 primary hap 2022 genbank) Desmodus rotundus GCA_022682495.1_HLdesRot8A 572 2,113,473,284 611 255,063 32.58
173 common vampire bat (v2 DRU21DN04 2018 genbank) Desmodus rotundus GCA_002940915.2_ASM294091v2 29,800 2,063,791,738 54,308 45,952,385 29.29
174 common vampire bat (v2 DRU21DN04 2018 refseq) Desmodus rotundus GCF_002940915.1_ASM294091v2 29,801 2,063,808,397 54,308 45,952,385 29.29
175 Coquerel's sifaka 6110/Marcella (2015 genbank) Propithecus coquereli GCA_000956105.1_Pcoq_1.0 22,538 2,798,135,037 276,544 714,387,616 29.68
176 cork oak (v1 HL8 2018) Quercus suber GCF_002906115.1_CorkOak1.0 23,344 953,298,670 26,139 19,161,636 36.11
177 corroboree frog (hap2 2023 genbank) Pseudophryne corroboree GCA_028390025.1_aPseCor3.hap2 3,127 8,872,758,793 2,699 21,212,457 75.08
178 cotton bollworm (Harm_GR_Male_#8 2017 genbank) Helicoverpa armigera GCA_002156985.1_Harm_1.0 997 337,072,206 26,910 37,110,157 25.47
179 cowpea (IT97K-499-35 v1 2019) Vigna unguiculata GCF_004118075.1_ASM411807v1 682 519,066,764 68 2,720,798 41.67
180 crab-eating macaque WashU 2013 genbank Macaca fascicularis GCA_000364345.1_Macaca_fascicularis_5.0 7,600 2,946,827,162 80,474 142,977,352 48.92
181 crab-eating macaque WashU 2013 refseq Macaca fascicularis GCF_000364345.1_Macaca_fascicularis_5.0 7,601 2,946,843,737 80,474 142,977,352 48.44
182 crucian carp (primary hap 2023 genbank) Carassius carassius GCA_963082965.1_fCarCar2.1 278 1,684,313,041 832 166,400 45.86
183 crustacean D.carinata (v1 CSIRO-1 2022) Daphnia carinata GCF_022539665.1_CSIRO_AGI_Dcar_v0.2 227 108,811,333 2 577,786 25.67
184 crustacean D.magna (SK Sungkyunkwan U. 2019 genbank) Daphnia magna GCA_003990815.1_ASM399081v1 4,192 122,937,721 13,228 8,297,703 20.83
185 crustacean P.pollicipes (v2 AB1234 2020) Pollicipes pollicipes GCF_011947565.2_Ppol_2 1,254 770,089,732 10,786 8,309,452 19.38
186 dark-edged splitfin (DD_20200921_A 2022 genbank) Girardinichthys multiradiatus GCA_021462225.2_DD_fGirMul_XY1 73 1,150,020,615 409 6,172,100 47.57
187 Daubenton's bat (primary hap 2023 genbank) Myotis daubentonii GCA_963259705.1_mMyoDau2.1 122 2,127,824,474 1,099 219,800 38.85
188 degu (3935 2012 genbank) Octodon degus GCA_000260255.1_OctDeg1.0 7,133 2,995,866,140 252,770 469,628,236 29.31
189 denticle herring (v1 2019) Denticeps clupeoides GCF_900700375.1_fDenClu1.1 460 567,401,054 464 4,648,387 28.83
190 diamondback terrapin (hap1 2023 genbank) Malaclemys terrapin pileata GCA_027887155.1_rMalTer1.hap1 76 2,211,221,380 141 1,749,567 46.30
191 diplomonads (v1 WB C6 WB C6 2008) Giardia lamblia ATCC 50803 GCF_000002435.1_GL2 92 11,213,615 242 21,441 5.25
192 dog (BS72 2019 Broad) Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU 656,742 2,544,127,025 10,428 1,042,800 45.44
193 domestic ferret (Sable ID 1420 FGSC 2011) Mustela putorius furo GCF_000215625.1_MusPutFur1.0 7,742 2,410,774,536 109,700 132,851,443 29.64
194 domestic guinea pig (2N 2008 genbank) Cavia porcellus GCA_000151735.1_Cavpor3.0 3,143 2,723,202,840 58,460 59,849,908 38.03
195 domestic silkworm (genbank 2020) Bombyx mori GCA_014905235.2_Bmori_2016v1.0 696 460,334,017 30 452,530 47.68
196 domesticated barley (H.vulgare 2021 genbank) Hordeum vulgare subsp. vulgare GCA_904849725.1_MorexV3_pseudomolecules_assembly 290 4,225,577,519 162 1,325,794 72.59
197 downy woodpecker (bDryPub1 primary hap 2020) Dryobates pubescens GCA_014839835.1_bDryPub1.pri 181 1,187,956,536 187 4,003,130 32.06
198 downy woodpecker (BGI 2014) Dryobates pubescens GCF_000699005.1_ASM69900v1 31,254 1,167,323,935 96,471 43,403,938 27.85
199 E. coli (K-12 BW25113 2014 genbank) Escherichia coli BW25113 GCA_000750555.1_ASM75055v1 1 4,631,469 0 0 7.44
200 East African water lily (v1 Beijing-Zhang1983 2019) Nymphaea colorata GCF_008831285.1_ASM883128v1 800 409,013,923 627 62,502 26.82
201 eastern European house mouse (PWK_PhJ v1 2016) Mus musculus musculus GCA_001624775.1_PWK_PhJ_v1 3,140 2,559,987,392 904,107 236,641,865 36.87
202 eastern happy (v2 2018) Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 249 880,445,564 490 1,186,663 30.80
203 Egyptian rousette (US006 2019 Broad) Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU 221,754 1,972,131,931 4,332 433,200 32.69
204 Egyptian rousette (v1 2020 genbank) Rousettus aegyptiacus GCA_014176215.1_mRouAeg1.p 30 1,893,618,717 242 26,674,495 32.62
205 elephant shark (2013) Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 21,204 974,498,586 46,232 37,545,143 36.67
206 emu (v1 ZJU1.0 2020) Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 802 1,247,468,792 512 46,323 19.17
207 epaulette shark (2021 genbank) Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. 1,963 3,983,483,121 3,716 77,564,682 43.90
208 eudicots lettuce (Salinas v7 2020) Lactuca sativa GCF_002870075.2_Lsat_Salinas_v7 8,325 2,391,578,241 353,389 181,680,577 52.96
209 Euphrates poplar (v1 2014) Populus euphratica GCF_000495115.1_PopEup_1.0 9,615 496,032,534 23,174 23,344,727 43.31
210 Eurasian badger (v3.1 2021) Meles meles GCF_922984935.1_mMelMel3.1_paternal_haplotype 538 2,738,694,446 101 23,800 38.09
211 Eurasian red squirrel (v1.1 2019) Sciurus vulgaris GCA_902686455.1_mSciVul1.1 638 2,878,591,032 1,177 163,358,994 33.78
212 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 216 2,297,765,997 872 6,026,660 32.43
213 European conger (primary hap 2023 genbank) Conger conger GCA_963514075.1_fConCon1.1 381 1,136,421,744 1,009 201,800 35.55
214 European eel (primary hap 2020 genbank) Anguilla anguilla GCA_013347855.1_fAngAng1.pri 53 979,029,243 640 3,868,499 27.45
215 European mink (primary hap 2023 genbank) Mustela lutreola GCA_030435805.1_mMusLut2.pri 26 2,586,285,479 39 7,800 36.60
216 European peacock (2021 genbank) Nymphalis io GCA_905147045.1_ilAglIoxx1.1 42 384,172,283 10 2,415 46.90
217 European plaice (primary hap 2022 genbank) Pleuronectes platessa GCA_947347685.1_fPlePla1.1 356 687,405,470 1,072 214,400 33.59
218 European snow vole (primary hap 2023 genbank) Chionomys nivalis GCA_950005125.1_mChiNiv1.1 161 2,393,406,913 197 39,400 34.98
219 European turtle dove (v1.1 alternate hap 2019) Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype 3,333 1,035,214,426 0 0 20.26
220 European turtle dove (v1.1 primary hap 2019) Streptopelia turtur GCA_901699155.1_bStrTur1.1 357 1,178,928,410 894 3,876,374 21.07
221 European woodmouse (2022 genbank) Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 498 2,889,801,511 1,129 225,617 40.60
222 fall armyworm (Faw-zju 2020 genbank) Spodoptera frugiperda GCA_011064685.1_ZJU_Sfru_1.0 91 486,271,792 525 52,500 37.37
223 fall armyworm (Faw-zju v1.0 refseq 2020) Spodoptera frugiperda GCF_011064685.1_ZJU_Sfru_1.0 92 486,287,157 525 52,500 37.37
224 fire-bellied toad (primary hap 2023 genbank) Bombina bombina GCA_027579735.1_aBomBom1.pri 2,468 10,019,681,242 7,009 198,898,177 69.42
225 fission yeast (v1 972h- 2007 refseq) Schizosaccharomyces pombe GCF_000002945.1_ASM294v2 4 12,591,251 6 402 16.23
226 fission yeast (v2 972h- 2019 genbank) Schizosaccharomyces pombe GCA_000002945.3_ASM294v3 3 12,571,820 6 402 16.07
227 flatworm S.haematobium (v2 2020) Schistosoma haematobium GCF_000699445.2_SchHae_2.0 666 371,394,055 15,128 951,002 34.10
228 flier cichlid (MPI-CPG 2019 genbank) Archocentrus centrarchus GCA_007364275.2_fArcCen1 189 932,947,025 744 16,903,477 30.69
229 Florida manatee (Lorelei 2012 genbank) Trichechus manatus latirostris GCA_000243295.1_TriManLat1.0 6,322 3,103,791,524 160,167 334,708,729 38.47
230 fly D.albomicans (v1 15112-1751.03 2019) Drosophila albomicans GCF_009650485.1_drosAlbom15112-1751.03v1 11 165,846,275 7 350 33.62
231 fly D.santomea (v1.0 2021) Drosophila santomea GCF_016746245.1_Prin_Dsan_1.0 104 146,781,989 14 1,400 23.29
232 fly D.sechellia (sech25 v1 2019 UC Irvine) Drosophila sechellia GCF_004382195.1_ASM438219v1 402 154,170,815 38 3,800 25.80
233 fly D.serrata (v1.0 Fors4 2017) Drosophila serrata GCF_002093755.1_Dser1.0 1,356 198,035,861 0 0 37.08
234 fly D.simulans (w501 v3.0 2021) Drosophila simulans GCF_016746395.1_Prin_Dsim_3.0 96 131,678,491 2 1,000 23.77
235 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 8,123 165,709,965 5,400 3,112,072 24.05
236 fly D.yakuba (v1 2021) Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 54 147,899,151 11 1,100 23.58
237 Gaboon caecilian (v1.1 2019 genbank) Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 163 3,779,413,726 433 5,502,713 52.86
238 Gaboon caecilian (v1.1 2019 refseq) Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 164 3,779,430,019 433 5,502,713 52.86
239 giant panda (2009 BGI) Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 81,467 2,299,509,015 119,126 54,196,184 39.56
240 giant panda (Jingjing v1 2017) Ailuropoda melanoleuca GCA_002007445.1_ASM200744v1 57,412 2,428,261,127 186,846 46,792,990 40.90
241 giant panda (Jingjing v2 genbank 2020) Ailuropoda melanoleuca GCA_002007445.2_ASM200744v2 77,287 2,444,060,653 190,364 46,955,198 40.77
242 giant panda (Jingjing v2 refseq 2020) Ailuropoda melanoleuca GCF_002007445.1_ASM200744v2 77,288 2,444,077,458 190,364 46,955,198 40.71
243 gilthead seabream (v1 2019) Sparus aurata GCF_900880675.1_fSpaAur1.1 176 833,595,063 1,050 342,268 25.72
244 Glanville fritillary (genbank 2021) Melitaea cinxia GCA_905220565.1_ilMelCinx1.1 32 499,413,036 80 25,000 48.62
245 globe artichoke (v1 2C 2018) Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 8,283 725,197,765 310,473 70,818,977 39.50
246 goat (v1 San Clemente 2016 USDA genbank) Capra hircus GCA_001704415.1_ARS1 29,906 2,922,796,603 790 39,279 50.62
247 goat (v1 San Clemente 2016 USDA refseq) Capra hircus GCF_001704415.1_ARS1 29,907 2,922,813,246 790 39,279 50.26
248 golden eagle (v1.2 2019) Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 142 1,203,454,851 191 4,639,807 19.26
249 golden eagle (v1.2 alternate hap 2019) Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype 3,860 823,060,160 39 561,510 19.26
250 golden hamster (Baylor 2013 genbank) Mesocricetus auratus GCA_000349665.1_MesAur1.0 21,483 2,504,908,775 216,216 428,748,785 24.30
251 golden snub-nosed monkey (2014 Novogene) Rhinopithecus roxellana GCA_000769185.1_Rrox_v1 135,513 2,899,551,855 61,291 43,508,254 50.65
252 grape phylloxera (Bord-2020 2022 genbank) Daktulosphaira vitifoliae GCA_025091365.1_ASM2509136v1 8,544 282,588,554 41,970 6,460,685 54.06
253 gray mouse lemur genbank Microcebus murinus GCA_000165445.3_Mmur_3.0 7,677 2,487,392,024 43,363 101,087,221 39.97
254 gray short-tailed opossum (mMonDom1 primary hap 2023 genbank) Monodelphis domestica GCA_027887165.1_mMonDom1.pri 14 3,586,183,679 2,255 31,907,317 43.38
255 great fruit-eating bat (v1 hap1 2024) Artibeus lituratus GCA_038363095.1_mArtLit.hap1 419 2,293,600,955 81 12,100 34.66
256 great roundleaf bat (v1 ML-2016 2016 genbank) Hipposideros armiger GCA_001890085.1_ASM189008v1 7,570 2,236,564,388 172,751 281,788,372 28.05
257 great roundleaf bat (v1 ML-2016 2016 refseq) Hipposideros armiger GCF_001890085.1_ASM189008v1 7,571 2,236,581,172 172,751 281,788,372 28.99
258 greater horseshoe bat (mRhiFer1 2020) Rhinolophus ferrumequinum GCA_014108255.1_mRhiFer1.p 50 2,072,561,339 292 16,878,831 34.75
259 greater horseshoe bat (v1 MPI-CBG 2019 genbank) Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p 135 2,075,785,400 158 7,546,098 34.90
260 greater horseshoe bat (v1 MPI-CBG 2019 refseq) Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p 134 2,075,768,562 158 7,546,098 34.90
261 greater mouse-eared bat (2019 Broad) Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU 1,045,197 2,294,472,406 8,133 813,300 39.02
262 greater pipefish (v1.1 2019) Syngnathus acus GCA_901709675.1_fSynAcu1.1 87 324,331,233 43 13,700 25.95
263 greater sac-winged bat (primary hap 2024 genbank) Saccopteryx bilineata GCA_036850765.1_mSacBil1_pri_phased_curated 257 2,612,326,447 468 33,092,045 43.30
264 greater wax moth (Carbio01_MB 2019 genbank) Galleria mellonella GCA_003640425.2_ASM364042v2 13,303 401,899,506 27,314 3,703,827 48.30
265 green algae C.reinhardtii (v1 CC-503 cw92 v1 2007) Chlamydomonas reinhardtii GCF_000002595.1_v3.0 1,558 120,404,952 10,425 14,994,990 30.46
266 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 genbank) Chlamydomonas reinhardtii GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 53 111,098,438 1,459 4,050,214 34.14
267 green algae C.variabilis (NC64A 2010 genbank) Chlorella variabilis GCA_000147415.1_v_1.0 414 46,159,512 3,543 3,945,106 37.21
268 green monkey 1994-021 (2014 genbank) Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1 2,003 2,789,639,778 178,925 37,655,314 49.58
269 green sea turtle (BGI 2013) Chelonia mydas GCF_000344595.1_CheMyd_1.0 140,023 2,208,410,377 134,344 98,028,380 28.33
270 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri 99 2,134,593,249 294 11,959,915 31.97
271 harbor porpoise (BS71 2019) Phocoena phocoena GCA_004363495.1_PhoPho_v1_BIUU 1,331,158 2,701,010,810 7,114 711,400 46.85
272 Harpy eagle (primary hap 2022 genbank) Harpia harpyja GCA_026419915.1_bHarHar1_primary_haplotype 322 1,351,447,071 342 2,651,394 24.82
273 Hawaiian crow (2021 genbank) Corvus hawaiiensis GCA_020740725.1_bCorHaw1.pri.cur 187 1,151,594,481 294 1,813,227 23.63
274 Hawaiian monk seal (2017 Johns Hopkins U genbank) Neomonachus schauinslandi GCA_002201575.1_ASM220157v1 7,871 2,400,822,554 38,833 53,716,773 42.75
275 Hawaiian monk seal (2017 Johns Hopkins U refseq) Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 7,872 2,400,839,308 38,833 53,716,773 42.35
276 hippopotamus (v2 hap2 2023 genbank) Hippopotamus amphibius kiboko GCA_030028045.1_mHipAmp2.hap2 356 2,538,242,855 226 45,200 35.48
277 Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020) Sturnira hondurensis GCF_014824575.1_WHU_Shon_v2 27,486 2,098,361,935 38,823 4,344,497 31.28
278 honeybee mite (v1 2017) Varroa destructor GCF_002443255.1_Vdes_3.0 1,426 368,942,295 3,073 271,336 15.10
279 hooded crow (v2 S_Up_H32 2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 113 1,042,281,180 27,795 30,616,787 18.24
280 hooded crow (v5 S_Up_H32 2021) Corvus cornix cornix GCF_000738735.5_ASM73873v5 47 1,030,881,721 425 3,256,893 19.03
281 horse (Twilight 2007 genbank) Equus caballus GCA_000002305.1_EquCab2.0 9,636 2,474,912,402 45,680 46,138,889 44.34
282 hourglass treefrog (paternal 2023 genbank) Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat 2,200 2,214,937,069 804 6,692,944 51.44
283 house finch (primary hap 2022 genbank) Haemorhous mexicanus GCA_027477595.1_bHaeMex1.pri 183 1,148,216,196 295 11,207,145 23.53
284 house fly (aabys 2013 genbank) Musca domestica GCA_000371365.1_Musca_domestica-2.0.2 20,486 750,402,002 102,610 58,683,792 52.61
285 house mouse (AKR_J v1 2016) Mus musculus GCA_001624295.1_AKR_J_v1 5,953 2,712,707,555 314,064 358,588,040 35.63
286 house mouse (A_J v1 2016) Mus musculus GCA_001624215.1_A_J_v1 4,688 2,629,995,394 365,877 281,550,633 36.59
287 house mouse (BALB_cJ v1 2016) Mus musculus GCA_001632525.1_BALB_cJ_v1 3,825 2,627,344,254 361,689 292,583,863 36.26
288 house mouse (C3H_HeJ v1 2016) Mus musculus GCA_001632575.1_C3H_HeJ_v1 4,069 2,701,131,316 369,499 382,122,545 34.76
289 house mouse (CBA_J v1 2016) Mus musculus GCA_001624475.1_CBA_J_v1 5,466 2,921,727,955 410,639 602,647,135 32.13
290 house mouse (DBA_2J v1 2016) Mus musculus GCA_001624505.1_DBA_2J_v1 4,105 2,606,162,158 409,306 296,844,310 35.84
291 house mouse (FVB_NJ v1 2016) Mus musculus GCA_001624535.1_FVB_NJ_v1 5,013 2,588,619,290 380,840 275,937,507 36.05
292 house mouse (GRCm38.p6 2017) Mus musculus GCF_000001635.26_GRCm38.p6 239 2,818,974,548 904 79,435,853 44.30
293 house mouse (LP_J v1 2016) Mus musculus GCA_001632615.1_LP_J_v1 3,499 2,730,798,503 402,247 434,529,361 33.73
294 house mouse (NOD_ShiLtJ v1 2016) Mus musculus GCA_001624675.1_NOD_ShiLtJ_v1 5,544 2,982,063,250 595,433 684,250,356 31.32
295 house mouse (NZO_HlLtJ v1 2016) Mus musculus GCA_001624745.1_NZO_HlLtJ_v1 7,022 2,699,267,296 337,909 366,433,049 35.15
296 human (GRCh38.p13 2019) Homo sapiens GCF_000001405.39_GRCh38.p13 639 3,272,089,205 1,268 161,368,694 50.25
297 human (GRCh38.p14 2022) Homo sapiens GCF_000001405.40_GRCh38.p14 705 3,298,430,636 1,270 161,611,482 50.25
298 human (NA24385.mat 2021) Homo sapiens GCA_018852615.1_HG002.pri.mat.f1_v2 445 3,060,609,068 6 372 53.50
299 human (NA24385.mat 2022) Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 355 3,061,735,012 109 1,510,078 54.00
300 human (NA24385.pat 2021) Homo sapiens GCA_018852605.1_HG002.alt.pat.f1_v2 610 2,958,633,312 5 256 53.64
301 human (NA24385.pat 2022) Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 514 2,959,277,077 117 966,735 54.12
302 human betaherpesvirus 6A (U1102 1995 genbank) Human betaherpesvirus 6A GCA_000845685.2_ViralProj14462 1 159,378 0 0 10.20
303 human T2T CHM13 v2.0 Homo sapiens GCA_009914755.4_T2T-CHM13v2.0 25 3,117,292,070 0 0 54.59
304 Iberian mole (v1 TD23 2020) Talpa occidentalis GCF_014898055.1_MPIMG_talOcc4 4,425 2,098,020,470 3,640 364,000 32.63
305 Iberian mole (v2 TD23 2020) Talpa occidentalis GCF_014898055.2_MPIMG_talOcc4v2 3,202 2,080,989,295 3,639 363,900 32.66
306 Indian glassy fish (v1 2019) Parambassis ranga GCF_900634625.1_fParRan2.1 156 551,012,959 1,523 10,561,548 25.10
307 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA 8,603 779,469,774 51,440 41,237,672 33.31
308 Indianmeal moth (v1 USDA-ARS_2022_Savannah primary hap 2023) Plodia interpunctella GCF_027563975.1_ilPloInte3.1 46 291,332,140 26 2,600 36.71
309 Jamaican fruit-eating bat (US092 2019 Broad) Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU 794,376 2,424,784,351 4,324 432,400 34.14
310 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 2,012 927,656,957 11,601 10,397,704 19.88
311 Jerdon's jumping ant (DR-91 v8.5 2018) Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 857 334,536,844 499 937,191 29.33
312 kakapo (Jane v1 2019) Strigops habroptila GCF_004027225.1_bStrHab1_v1.p 99 1,165,621,973 362 27,568,509 20.23
313 kakapo (Jane v2 2020 genbank) Strigops habroptila GCA_004027225.2_bStrHab1.2.pri 90 1,148,615,375 373 10,544,081 20.53
314 koala (Bilbo 61053 2017) Phascolarctos cinereus GCF_002099425.1_phaCin_unsw_v4.1 1,907 3,192,581,492 1 1 41.63
315 Korean giant-fin mudskipper (v1 primary hap 2020 genbank) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri 124 752,621,857 700 7,178,561 39.10
316 Korean giant-fin mudskipper (v1 primary hap 2020 refseq) Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri 124 752,621,858 700 7,178,561 39.10
317 lanner falcon (bFalBia1 primary hap 2022 genbank) Falco biarmicus GCA_023638135.1_bFalBia1.pri 397 1,285,492,283 158 2,152,808 23.59
318 large cabbage white (genbank 2021) Pieris brassicae GCA_905147105.1_ilPieBrab1.1 402 292,341,157 29 5,637 41.05
319 large tree shrew (BS70 2019 Broad) Tupaia tana GCA_004365275.1_TupTan_v1_BIUU 3,883,620 3,648,908,809 6,466 646,600 42.83
320 leatherback sea turtle (v1 2019 genbank G10K) Dermochelys coriacea GCA_009764565.1_rDerCor1.pri 55 2,165,403,198 558 5,729,700 34.13
321 leatherback sea turtle (v1 alternate hap 2019) Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
322 leatherback sea turtle (v3 2020 refseq G10K) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 40 2,164,762,090 667 5,594,612 34.21
323 Leishmania infantum (JPCM5 2011 kinetoplastids genbank) Leishmania infantum JPCM5 GCA_000002875.2_ASM287v2 76 32,122,061 454 20,333 20.98
324 Leishmania major (Friedlin 2011 kinetoplastids genbank) Leishmania major strain Friedlin GCA_000002725.2_ASM272v2 36 32,855,089 7 7 20.92
325 Leishmania martiniquensis (LSCM1 2021 genbank) Leishmania martiniquensis GCA_017916325.1_LU_Lmar_1.0 42 32,413,670 5 50 20.45
326 Leishmania orientalis (LSCM4 2021 genbank) Leishmania orientalis GCA_017916335.1_LU_Lori_1.0 98 34,194,276 11 1,707 20.18
327 leopard (Maewha 2016 genbank) Panthera pardus GCA_001857705.1_PanPar1.0 50,376 2,578,002,243 214,953 99,153,465 41.28
328 lesser Egyptian jerboa (JJ0015 2012 genbank) Jaculus jaculus GCA_000280705.1_JacJac1.0 10,895 2,835,226,221 326,464 364,982,898 33.98
329 lesser kestrel (v1 2021) Falco naumanni GCF_017639655.1_bFalNau1.pat 291 1,215,719,379 298 4,077,287 19.20
330 lesser rhea (primary hap 2023 genbank) Rhea pennata GCA_028389875.1_bPtePen1.pri 179 1,269,000,025 128 1,451,673 22.80
331 lesser sac-winged bat (primary hap 2024 genbank) Saccopteryx leptura GCA_036850995.1_mSacLep1_pri_phased_curated 167 2,576,497,192 573 19,614,433 42.31
332 lesser salmon catfish (primary hap 2023 genbank) Neoarius graeffei GCA_027579695.1_fNeoGra1.pri 38 2,341,916,362 334 13,260,140 62.77
333 lettuce (Salinas v7 2018) Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 11,453 2,384,188,817 350,251 174,654,477 53.12
334 lettuce (Salinas v8 2020) Lactuca sativa GCF_002870075.3_Lsat_Salinas_v8 6,831 2,388,971,937 351,533 181,402,475 53.01
335 live sharksucker (v1 2019) Echeneis naucrates GCF_900963305.1_fEcheNa1.1 38 544,229,245 140 599,356 21.82
336 lumpfish (primary hap 2019 genbank) Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri 49 572,902,877 347 10,182,204 28.09
337 Ma's night monkey genbank Aotus nancymaae GCA_000952055.2_Anan_2.0 28,921 2,861,668,348 83,929 147,245,327 45.30
338 malaria parasite P. falciparum (3D7 2016 genbank) Plasmodium falciparum 3D7 GCA_000002765.3_GCA_000002765 16 23,332,839 0 0 66.96
339 Malayan pangolin (MP_PG03-UM 2016 genbank) Manis javanica GCA_001685135.1_ManJav1.0 80,669 2,547,379,330 984,656 198,861,917 32.47
340 malo sina (v1 2012) Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b 2,491 259,907,595 20,693 17,431,658 24.13
341 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 3,073 680,366,784 29,388 38,533,415 27.35
342 meadow brown (genbank 2021) Maniola jurtina GCA_905333055.1_ilManJurt1.1 32 402,054,102 21 3,697 43.99
343 meercat (VVHF042 2019 DNA Zoo genbank) Suricata suricatta GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC 63,791 2,353,578,744 65,245 6,638,100 39.95
344 meerkat (BS45 2019 Broad) Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU 349,868 2,471,813,441 4,153 415,300 40.76
345 melon fly (v1 USDA-PBARC White Pupae T1 2014) Zeugodacus cucurbitae GCF_000806345.1_ASM80634v1 5,572 374,820,345 37,430 58,538,880 31.97
346 microsporidians E.bieneusi (H348 2009 genbank) Enterocytozoon bieneusi H348 GCA_000209485.1_ASM20948v1 1,733 3,860,738 437 1,517 26.60
347 microsporidians E.cuniculi (v1 GB-M1 2002) Encephalitozoon cuniculi GB-M1 GCF_000091225.1_ASM9122v1 11 2,497,519 4 805 8.70
348 microsporidians N.ceranae (BRL01 2009 genbank) Nosema ceranae BRL01 GCA_000182985.1_ASM18298v1 5,465 7,860,219 0 0 41.35
349 minke whale (2013 genbank) Balaenoptera acutorostrata scammoni GCA_000493695.1_BalAcu1.0 10,775 2,431,671,281 173,296 145,030,652 39.76
350 minke whale (primary hap 2023 genbank) Balaenoptera acutorostrata GCA_949987535.1_mBalAcu1.1 1,375 2,772,901,778 1,177 235,400 42.67
351 mites & ticks V.jacobsoni (v1 VJ856 2017) Varroa jacobsoni GCF_002532875.1_vjacob_1.0 4,881 365,585,945 3,360 408,908 14.56
352 Mongolian gerbil (US013 2019 Broad) Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU 785,187 2,637,041,433 11,139 1,113,900 39.32
353 monito del monte (mDroGli1 primary hap 2021 genbank) Dromiciops gliroides GCA_019393635.1_mDroGli1.pri 18 3,303,217,110 260 2,929,889 42.81
354 moth C.splendana (v1 2021 genbank) Cydia splendana GCA_910591565.1_ilCydSple1.1 112 630,621,894 150 39,000 46.32
355 moth S.litura (Ishihara v1 2017) Spodoptera litura GCF_002706865.1_ASM270686v1 2,975 438,956,275 10,662 10,919,137 37.01
356 mung bean (VC1973A 2015 genbank) Vigna radiata var. radiata GCA_000741045.2_Vradiata_ver6 2,463 463,011,117 96,870 33,558,735 34.92
357 mute swan (bCygOlo1 v1 alternate hap 2019) Cygnus olor GCA_009769485.1_bCygOlo1.alt 5,613 814,162,536 3 85 19.97
358 mute swan (v1 primary hap 2019) Cygnus olor GCA_009769625.1_bCygOlo1.pri 181 1,135,009,278 446 10,642,469 21.24
359 naked mole-rat (NMR 29 2012 genbank) Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0 4,228 2,618,188,253 110,424 303,433,536 28.99
360 narwhal (BS41 2019 Broad) Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU 644,873 2,472,545,502 8,600 860,000 44.83
361 Nelson's sparrow (bAmmNel1 primary hap 2023 genbank) Ammospiza nelsoni GCA_027579445.1_bAmmNel1.pri 77 1,185,463,352 215 5,092,979 25.88
362 nematode C.briggsae (AF16 v1 2008) Caenorhabditis briggsae GCF_000004555.1_ASM455v1 12 108,478,526 6,713 3,041,279 35.50
363 New South Wales waratah (AGSP 2013) Amborella trichopoda GCF_000471905.2_AMTR1.0 5,746 706,495,326 39,556 38,113,750 36.08
364 nine-banded armadillo (v3.0 3-136 2012 Baylor genbank) Dasypus novemcinctus GCA_000208655.2_Dasnov3.0 46,558 3,631,505,655 268,442 331,640,683 44.64
365 nine-banded armadillo (v3.0 3-136 2012 Baylor refseq) Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 46,559 3,631,522,711 268,442 331,640,683 44.64
366 North Atlantic right whale (hap2 2023 genbank) Eubalaena glacialis GCA_028564815.1_mEubGla1.hap2 779 2,832,194,838 363 4,859,315 44.01
367 northern elephant seal (v2 JK_09032017 2021) Mirounga angustirostris GCF_021288785.1_ASM2128878v2 142,455 2,366,166,981 39,936 15,295,600 34.83
368 northern house mosquito (v1 TS 2021) Culex pipiens pallens GCF_016801865.1_TS_Cpip_V1 1,714 566,674,298 0 0 56.54
369 northern pike (primary hap 2020 genbank) Esox lucius GCA_011004845.1_fEsoLuc1.pri 53 918,749,000 112 1,022,735 32.97
370 northern white-cheeked gibbon (2012 GGSC) Nomascus leucogenys GCA_000146795.3_Nleu_3.0 17,492 2,962,077,449 180,468 205,468,402 48.35
371 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 176 2,647,915,728 581 21,334,956 44.34
372 olive baboon (2017 HGSC genbank) Papio anubis GCA_000264685.2_Panu_3.0 63,234 2,959,356,508 58,981 22,371,497 52.44
373 olive baboon (2017 HGSC RefSeq) Papio anubis GCF_000264685.3_Panu_3.0 63,235 2,959,373,024 58,981 22,371,497 52.44
374 oriental river prawn (v1 FS-2020 2020 genbank) Macrobrachium nipponense GCA_015104395.1_ASM1510439v1 24 1,985,027,095 16,132 8,066,000 48.34
375 painted lady (genbank 2021) Vanessa cardui GCA_905220365.1_ilVanCard2.1 37 424,813,639 91 26,300 44.41
376 pale spear-nosed bat (MPI-MPIP v1 2019) Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p 141 2,117,764,065 831 22,966,458 30.49
377 pea aphid (AL4f v1 2019) Acyrthosiphon pisum GCF_005508785.1_pea_aphid_22Mar2018_4r6ur 21,920 541,137,574 46,297 41,398,552 48.41
378 peregrine falcon (bFalPer1 primary hap 2022 genbank) Falco peregrinus GCA_023634155.1_bFalPer1.pri 124 1,311,580,791 232 4,014,385 24.67
379 pigeon pea (v1 2016 BGI) Cajanus cajan GCF_000340665.1_C.cajan_V1.0 36,536 592,970,700 36,387 34,435,295 39.25
380 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 1,313 900,477,767 94 24,999 36.36
381 platypus (Pmale09 2018 BGI) Ornithorhynchus anatinus GCA_002966995.1_ASM296699v1 4,568 1,990,409,179 476 47,600 52.94
382 platypus (Pmale09 v1 2019) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 305 1,858,552,590 522 15,159,818 51.25
383 platypus (Pmale09 v3 2020) Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 322 1,859,281,749 515 15,158,118 51.26
384 polar bear (Baiyulong BGI 2014 genbank) Ursus maritimus GCA_000687225.1_UrsMar_1.0 23,818 2,301,362,327 110,343 38,357,410 40.32
385 prehistoric monster fish (2019 genbank) Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
386 pronghorn (BS35 2019 Broad) Antilocapra americana GCA_004027515.1_AntAmePen_v1_BIUU 1,643,131 2,899,768,642 6,569 656,900 43.65
387 Przewalski's horse (Burgud 2014 genbank) Equus przewalskii GCA_000696695.1_Burgud 53,096 2,395,937,679 80,963 21,135,449 41.10
388 puma (SC36_Marlon 2018 genbank) Puma concolor GCA_003327715.1_PumCon1.0 2,174 2,432,949,531 178,992 114,069,938 40.74
389 pygmy chimpanzee (Ulindi genbank 2015) Pan paniscus GCA_000258655.2_panpan1.1 10,274 3,286,643,938 156,797 560,753,890 42.26
390 pygmy chimpanzee (v1 primary hap 2023) Pan paniscus GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri 443 3,271,621,005 8 1,240,299 43.81
391 pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank) Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 580 2,555,838,840 143 4,797,769 39.97
392 rabbit (New Zealand White DNA-2018 2021 genbank) Oryctolagus cuniculus GCA_009806435.2_UM_NZW_1.0 3,159 2,841,489,785 18,178 65,881,331 39.77
393 rabbit (Thorbecke 2009 Broad genbank) Oryctolagus cuniculus GCA_000003625.1_OryCun2.0 3,241 2,737,473,256 80,789 133,467,217 42.51
394 radish (v1 WS10039 2015) Raphanus sativus GCF_000801105.1_Rs1.0 10,676 426,614,037 28,041 54,594,507 26.67
395 red admiral (genbank 2021) Vanessa atalanta GCA_905147765.2_ilVanAtal1.2 142 370,436,055 18 3,582 41.83
396 red mason bee (LIB18336 2019) Osmia bicornis bicornis GCF_004153925.1_Obicornis_v3 10,222 210,591,136 2,089 33,406 28.65
397 red-crested turaco (2014 BGI) Tauraco erythrolophus GCF_000709365.1_ASM70936v1 59,587 1,155,540,733 75,085 6,806,072 20.46
398 red-legged seriema (BGI_N322 2014 BGI) Cariama cristata GCF_000690535.1_ASM69053v1 53,474 1,132,245,425 59,230 4,299,662 18.26
399 red-throated loon (hap2 2023 genbank) Gavia stellata GCA_030936135.1_bGavSte3.hap2 1,186 1,321,287,916 249 49,800 23.65
400 reedfish (2019) Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 1,885 3,811,038,701 5,614 238,294,611 44.57
401 Rhesus monkey (2015 Baylor) Macaca mulatta GCA_000772875.3_Mmul_8.0.1 284,727 3,236,207,768 64,538 94,132,579 53.08
402 Rice's whale (hap2 2023 genbank) Balaenoptera ricei GCA_028023285.1_mBalRic1.hap2 774 2,678,442,663 334 2,621,494 41.09
403 rifleman (BGI 2014) Acanthisitta chloris GCF_000695815.1_ASM69581v1 53,875 1,035,876,403 66,437 4,778,007 18.37
404 ring-tailed lemur BS26 Broad 2019 Lemur catta GCA_004024665.1_LemCat_v1_BIUU 575,427 2,298,449,872 4,599 459,900 39.29
405 Rio pearlfish (Nwh7 v1 2020) Nematolebias whitei GCF_014905685.1_NemWhi1 18,998 1,218,316,901 100,521 97,663,390 42.85
406 river trout (v1 2019) Salmo trutta GCF_901001165.1_fSalTru1.1 1,441 2,371,880,186 3,941 73,600,705 52.45
407 rock ptarmigan (primary hap 2022 genbank) Lagopus muta GCA_023343835.1_bLagMut1_primary 164 1,026,755,127 210 71,937 21.77
408 rose-grain aphid (CAU 2021 genbank) Metopolophium dirhodum GCA_019925205.1_ASM1992520v1 67 480,811,620 240 120,000 52.66
409 Ryukyu mouse (v1 2017 EBI genbank) Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1 3,161 2,553,105,128 306,650 280,223,414 35.76
410 Ryukyu mouse (v1 2017 EBI refseq) Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 3,162 2,553,121,441 306,650 280,223,414 34.85
411 saddleback dolphin (v1 primary hap 2023 genbank) Delphinus delphis GCA_949987515.1_mDelDel1.1 631 2,663,533,373 968 193,431 42.65
412 Saker falcon (bFalChe1 primary hap 2022 genbank) Falco cherrug GCA_023634085.1_bFalChe1.pri 282 1,309,366,964 258 3,961,655 24.96
413 salmon louse (v1.1 2020) Lepeophtheirus salmonis GCF_016086655.2_UVic_Lsal_1.1 9,833 650,300,227 608 60,449 53.54
414 saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank) Ammospiza caudacuta GCA_027887145.1_bAmmCau1.pri 282 1,241,209,685 363 2,919,107 29.04
415 Sardinian treefrog (hap1 2023 genbank) Hyla sarda GCA_029499605.1_aHylSar1.hap1 3,475 4,142,177,554 2,297 459,227 64.33
416 SARS-CoV-2 (Jan 2020 COVID-19) Severe acute respiratory syndrome coronavirus 2 GCF_009858895.2_ASM985889v3 1 29,903 0 0 1.38
417 sea anemones (CC7 2015 genbank) Exaiptasia diaphana GCA_001417965.1_Aiptasia_genome_1.1 4,312 256,132,296 637,478 45,974,993 20.37
418 sea lamprey (kPetMar1 primary hap 2020) Petromyzon marinus GCA_010993605.1_kPetMar1.pri 1,433 1,089,034,212 930 15,013,687 59.57
419 sea otter (GAN:26980312 2017 genbank) Enhydra lutris kenyoni GCA_002288905.2_ASM228890v2 6,767 2,455,089,215 23,134 29,682,816 40.96
420 segmented worms (v1 2012) Helobdella robusta GCF_000326865.1_Helobdella_robusta_v1.0 1,991 235,376,169 11,185 19,940,521 44.79
421 siamang (v1 Jambi primary hap 2023) Symphalangus syndactylus GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri 605 3,182,923,232 1 100 56.01
422 siamang (v2 Jambi primary hap 2024 genbank) Symphalangus syndactylus GCA_028878055.2_NHGRI_mSymSyn1-v2.0_pri 26 3,262,887,708 1 1,000,000 55.90
423 siamang (v2 Jambi primary hap 2024 refseq) Symphalangus syndactylus GCF_028878055.2_NHGRI_mSymSyn1-v2.0_pri 27 3,262,904,224 2 1,000,001 55.90
424 Siamese fighting fish (v2 primary hap 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
425 Siamese fighting fish (v3 primary hap 2020) Betta splendens GCF_900634795.3_fBetSpl5.3 70 441,388,503 328 29,269 23.93
426 silvery gibbon (v1 HM0894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.1_HMol 18,392 2,340,327,933 18,567 42,111,658 49.74
427 silvery gibbon (v2 HMO894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.2_HMol_V2 18,395 2,848,329,432 25,106 62,358,843 50.05
428 slow loris (BS32 2019) Nycticebus coucang GCA_004027815.1_NycCou_v1_BIUU 1,937,143 3,294,558,825 9,648 964,800 43.01
429 slow loris (primary hap 2022 genbank) Nycticebus coucang GCA_027406575.1_mNycCou1.pri 85 2,917,170,805 218 4,119,506 40.79
430 small Madagascar hedgehog Echinops telfairi GCA_000313985.1_EchTel2.0 8,401 2,947,007,737 269,444 341,827,925 32.24
431 smaller spotted catshark (v1.1 primary hap 2020 refseq) Scyliorhinus canicula GCF_902713615.1_sScyCan1.1 646 4,220,406,627 7,146 64,220,747 51.42
432 smalleye Pacific opah (hap2 2023 genbank) Lampris incognitus GCA_029633865.1_fLamInc1.hap2 544 1,482,357,630 3,115 622,730 53.30
433 smalltooth sawfish (v2 primary hap 2019 genbank) Pristis pectinata GCA_009764475.1_sPriPec2.pri 173 2,267,857,790 698 20,562,876 38.20
434 snowberry fruit fly (East Lansing v1.0 2016) Rhagoletis zephyria GCF_001687245.1_Rhagoletis_zephyria_1.0 86,670 1,113,962,544 227,684 68,863,791 43.03
435 sockeye salmon (On170113-E2 v1 2019) Oncorhynchus nerka GCF_006149115.1_Oner_1.0 36,124 1,927,141,915 25,659 74,077,260 48.53
436 southern bluefin tuna (primary hap 2021 genbank) Thunnus maccoyii GCA_910596095.1_fThuMac1.1 58 782,423,977 95 31,500 33.61
437 southern cattle tick (Rmic-2018 2020 genbank) Rhipicephalus microplus GCA_013339725.1_BIME_Rmic_1.3 7,048 2,529,930,717 1,576 158,004 39.39
438 southern grasshopper mouse (US017 2019 Broad) Onychomys torridus GCA_004026725.1_OnyTor_v1_BIUU 2,261,735 3,202,219,269 10,550 1,055,000 41.85
439 southern house mosquito (JHB 2007 genbank) Culex quinquefasciatus GCA_000209185.1_CulPip1.0 3,171 579,042,118 45,500 39,082,744 50.44
440 southern tamandua (Broad 2019) Tamandua tetradactyla GCA_004025105.1_TamTet_v1_BIUU 2,144,204 3,849,374,830 5,819 581,900 41.89
441 southern two-toed sloth (US054 2019 Broad) Choloepus didactylus GCA_004027855.1_ChoDid_v1_BIUU 2,532,333 3,390,661,301 5,099 509,900 41.14
442 southern white rhinoceros (SDZICR_KB13650 2012 genbank) Ceratotherium simum simum GCA_000283155.1_CerSimSim1.0 3,086 2,464,350,348 54,737 97,509,168 37.80
443 soybean (US DOE JGI-PGF v2.0 2010) Glycine max GCF_000004515.4_Glycine_max_v2.0 1,191 978,971,636 15,955 23,046,524 45.31
444 soybean (US DOE JGI-PGF v2.1 2018) Glycine max GCF_000004515.5_Glycine_max_v2.1 1,192 979,046,046 15,995 23,113,809 45.31
445 speckled wood butterfly (genbank 2021) Pararge aegeria GCA_905163445.1_ilParAegt1.1 71 516,586,240 11 1,998 44.44
446 sperm whale (SW-GA 2019) Physeter catodon GCF_002837175.2_ASM283717v2 14,677 2,512,149,402 128,928 103,431,451 41.06
447 sponges A.queenslandica (v1.0 2010 JGI-PGF) Amphimedon queenslandica GCF_000090795.1_v1.0 13,398 166,699,561 14,944 21,833,216 24.61
448 stable fly (8C7A2A5H3J4 2015 genbank) Stomoxys calcitrans GCA_001015335.1_Stomoxys_calcitrans-1.0.1 12,042 971,188,624 129,113 150,529,258 48.72
449 sterlet (maternal hap 2022 genbank) Acipenser ruthenus GCA_902713425.2_fAciRut3.2_maternal_haplotype 1,731 1,899,810,788 433 86,300 43.22
450 sterlet (v1 Gen_M01 2020) Acipenser ruthenus GCF_010645085.1_ASM1064508v1 3,404 1,830,501,248 6,283 1,254,212 39.32
451 stony coral S.pistillata (v1 CSM Monaco 2017) Stylophora pistillata GCF_002571385.1_Stylophora_pistillata_v1 5,688 400,120,318 49,077 42,153,288 21.45
452 striped catfish (primary hap 2022 genbank) Pangasianodon hypophthalmus GCA_027358585.1_fPanHyp1.pri 59 764,990,969 236 3,879,978 37.93
453 Sumatran orangutan (Susie 2018 genbank) Pongo abelii GCA_002880775.3_Susie_PABv2 5,260 3,065,035,716 553 21,607,691 54.33
454 Sumatran orangutan (v1 AG06213 primary hap 2023) Pongo abelii GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri 2,611 3,365,490,689 59 7,178,544 55.11
455 Swainson's thrush (bCatUst1 v1 alternate hap 2019) Catharus ustulatus GCA_009819505.1_bCatUst1.alt 3,601 1,128,658,440 13 343 22.74
456 Swainson's thrush (v1 primary hap 2019) Catharus ustulatus GCF_009819885.1_bCatUst1.pri 161 1,131,616,430 428 12,903,595 22.52
457 swamp sparrow (bMelGeo1 primary hap 2023 genbank) Melospiza georgiana GCA_028018845.1_bMelGeo1.pri 40 1,162,015,399 236 1,233,091 24.53
458 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 35,974 3,174,693,010 201,403 243,153,308 39.63
459 thale cress (tair10 Columbia 2011) Arabidopsis thaliana GCF_000001735.3_TAIR10 7 119,667,750 357 186,207 22.66
460 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 12,483 2,478,393,770 141,005 167,333,470 34.18
461 thorny skate (v1 CabotCenter1 v1 2020 refseq) Amblyraja radiata GCF_010909765.1_sAmbRad1.pri 957 2,558,784,953 3,753 190,972,533 52.28
462 thorny skate (v1 primary hap CabotCenter1 2020 genbank) Amblyraja radiata GCA_010909765.1_sAmbRad1.pri 958 2,558,801,738 3,753 190,972,533 52.28
463 tick D.silvarum (v1 2020) Dermacentor silvarum GCF_013339745.1_ASM1333974v1 1,665 2,474,308,340 13,519 1,351,997 39.21
464 tidepool copepod (San Diego 2019 genbank) Tigriopus californicus GCA_007210705.1_Tcal_SD_v2.1 459 191,142,546 14,007 3,987,384 18.15
465 tiger tail seahorse (QL1 v1 2016) Hippocampus comes GCF_001891065.1_H_comes_QL1_v1 37,377 493,775,940 23,101 34,408,932 24.52
466 tomato (v3.0 Heinz 1706 2018) Solanum lycopersicum GCF_000188115.4_SL3.0 3,150 828,349,174 19,634 81,405,486 35.29
467 trahira (v1 hap1 2023) Hoplias malabaricus GCA_029633855.1_fHopMal1.hap1 597 1,115,418,468 867 79,122,037 36.75
468 Trypanosoma equiperdum (OVI 2016 genbank) Trypanosoma equiperdum GCA_001457755.2_Trypanosoma_equiperdum_OVI_V2 2,026 26,228,029 6,447 114,722 16.64
469 Trypanosoma melophagium (St. Kilda St. Kilda 2022 genbank) Trypanosoma melophagium GCA_022059095.1_T.mel.1 64 23,303,718 0 0 25.19
470 tsetse fly (v1 IAEA_lab_2018 2020) Glossina fuscipes GCF_014805625.1_Yale_Gfus_2 7,986 390,087,113 9,688 9,932,410 35.36
471 two-lined caecilian (v1.1 2019 refseq) Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 66.86
472 Ugandan red Colobus (RC106 v1 2017) Piliocolobus tephrosceles GCA_002776525.1_ASM277652v1 47,644 2,922,819,259 77,615 99,907,110 49.45
473 Ugandan red Colobus (RC106 v2 2018) Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 47,449 3,038,007,327 63,620 88,304,875 50.19
474 Ugandan red Colobus (RC106 v3 2019) Piliocolobus tephrosceles GCF_002776525.3_ASM277652v3 46,654 3,037,997,551 64,415 88,300,329 50.18
475 Ugandan red Colobus (RC106 v4 2019) Piliocolobus tephrosceles GCF_002776525.4_ASM277652v4 34,372 2,997,795,033 57,757 87,908,719 50.23
476 Upper Galilee mountains blind mole rat (#2095 2014 genbank) Nannospalax galili GCA_000622305.1_S.galili_v1.0 154,975 3,061,408,210 201,121 147,976,214 36.23
477 valley oak (v3.0 2019) Quercus lobata GCF_001633185.1_ValleyOak3.0 2,010 846,070,421 1,674 1,928,049 37.85
478 vegetable marrow (v1 mu-cu-16 2017) Cucurbita pepo subsp. pepo GCF_002806865.1_ASM280686v2 25,263 261,354,759 49,649 15,060,240 29.16
479 velvet spider S.dumicola (v1 Namibia, Etosha 2020) Stegodyphus dumicola GCF_010614865.1_ASM1061486v1 16,531 2,551,871,595 7 354 48.99
480 wasp C.solmsi marchali (v1 2013) Ceratosolen solmsi marchali GCF_000503995.1_CerSol_1.0 2,457 277,059,195 7,471 1,278,763 49.31
481 water buffalo (Mediterranean 2013) Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0 366,982 2,836,150,610 263,385 74,388,041 46.13
482 Weddell seal (WS11-02 2013 genbank) Leptonychotes weddellii GCA_000349705.1_LepWed1.0 16,710 3,156,886,159 152,836 933,738,633 29.40
483 western European hedgehog (2012 genbank) Erinaceus europaeus GCA_000296755.1_EriEur2.0 5,802 2,715,703,478 219,764 382,647,390 42.03
484 western European hedgehog (primary hap 2023 genbank) Erinaceus europaeus GCA_950295315.1_mEriEur2.1 1,175 2,720,701,264 3,760 752,000 54.51
485 western European house mouse (WSB_EiJ v1 2016) Mus musculus domesticus GCA_001624835.1_WSB_EiJ_v1 2,239 2,689,657,557 399,976 422,192,374 33.39
486 western flower thrips (v2 FOCC.00 2017) Frankliniella occidentalis GCF_000697945.2_Focc_2.1 18,479 274,989,634 60,375 14,593,975 24.58
487 western lowland gorilla (Susie 2016) Gorilla gorilla gorilla GCA_900006655.3_Susie3 15,297 3,084,595,669 768 10,991,312 50.19
488 western lowland gorilla (v1.1 KB3781 2023) Gorilla gorilla gorilla GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri 637 3,600,562,452 38 5,248,239 51.22
489 western lowland gorilla (v2 KB3781 2024 genbank) Gorilla gorilla gorilla GCA_029281585.2_NHGRI_mGorGor1-v2.0_pri 25 3,545,834,224 2 2,000,000 50.90
490 western painted turtle (v303 2014) Chrysemys picta bellii GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 78,595 2,365,766,571 183,744 192,562,473 28.95
491 western painted turtle (v304 RCT428 2020) Chrysemys picta bellii GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 76,388 2,481,368,539 184,311 309,640,510 36.60
492 western predatory mite (v1.0 2012) Galendromus occidentalis GCF_000255335.1_Mocc_1.0 2,211 151,724,311 1,901 400,558 9.75
493 western wild mouse (SPRET_EiJ v1 2016) Mus spretus GCA_001624865.1_SPRET_EiJ_v1 5,404 2,625,587,472 334,091 287,422,141 36.24
494 wheat stem sawfly (v1 2014) Cephus cinctus GCF_000341935.1_Ccin1 1,976 162,245,578 8,733 3,073,234 22.27
495 white leghorn X broiler chicken (v1 leghorn haplotype v1 2021) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w 255 953,182,234 254 3,312,879 20.28
496 white-beaked dolphin (primary hap 2023 genbank) Lagenorhynchus albirostris GCA_949774975.1_mLagAlb1.1 410 2,544,835,795 1,070 214,000 39.75
497 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 1,763 2,474,071,336 79 18,851 33.02
498 white-tailed deer (Pink-7 2017 genbank) Odocoileus virginianus texanus GCA_002102435.1_Ovir.te_1.0 17,025 2,380,489,210 107,030 21,568,155 40.94
499 white-tailed eagle (primary hap 2022 genbank) Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 188 1,320,298,205 424 84,800 23.68
500 white-tufted-ear marmoset (2010 Wash U) Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 14,205 2,914,958,544 187,214 162,452,744 46.26
501 white-tufted-ear marmoset (CJ-08-46 2017) Callithrix jacchus GCA_002754865.1_ASM275486v1 39,944 2,845,375,248 48,495 9,511,100 48.71
502 white-tufted-ear marmoset (cj1700 genbank) Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 962 2,889,579,754 370 37,607,402 48.82
503 white-tufted-ear marmoset (v1 paternal hap 2020) Callithrix jacchus GCA_011100535.1_mCalJac1.pat 336 2,682,316,413 788 11,206,679 49.24
504 white-tufted-ear marmoset (v1.2 2021 genbank) Callithrix jacchus GCA_011100555.2_mCalJa1.2.pat.X 1,234 2,874,881,015 1,165 13,690,514 47.55
505 whooping crane (maternal hap 2023 genbank) Grus americana GCA_028858705.1_bGruAme1.mat 929 1,257,821,324 262 4,676,178 22.13
506 wild Bactrian camel (CB1 Naran 2013 genbank) Camelus ferus GCA_000311805.2_CB1 13,333 2,009,177,929 60,971 23,778,176 34.36
507 wild emmer wheat (Zavitan Atlit2015 v2.0 2019) Triticum dicoccoides GCF_002162155.1_WEW_v2.0 148,396 10,677,929,594 344,768 353,856,019 2.75
508 wild peanut A.duranensis (v1 V14167 2017) Arachis duranensis GCF_000817695.2_Aradu1.1 1,507 1,084,261,490 133,967 144,244,720 45.37
509 wild strawberry (2011 genbank) Fragaria vesca subsp. vesca GCA_000184155.1_FraVesHawaii_1.0 3,047 214,217,322 16,253 12,337,912 21.45
510 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 3,744 1,110,963,465 102 38,956 20.58
511 woodchuck (CNAG 2019) Marmota monax GCA_901343595.1_MONAX5 48,511 2,625,891,882 57,045 74,045,625 32.84
512 woodchuck (v1.0 LI92 2021) Marmota monax GCF_021218885.1_Marmota_monax_Labrador192_V1.0 3,335 2,638,778,829 46 4,600 35.17
513 wrentit (frontalis MVZ Bird 193981 primary hap 2023 genbank) Chamaea fasciata GCA_029207755.1_bChaFas1.0.hap1 1,342 1,194,545,626 353 35,300 25.86
514 Yangtze finless porpoise (v1 2018 refseq) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 13,699 2,284,628,084 52,647 16,346,815 32.89
515 Yangtze finless porpoise (v1 wild 2018 genbank) Neophocaena asiaeorientalis asiaeorientalis GCA_003031525.1_Neophocaena_asiaeorientalis_V1 13,698 2,284,611,699 52,647 16,346,815 42.26
516 Yangtze River dolphin (v1 BGI 2013 genbank) Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1 30,712 2,429,195,737 124,797 32,195,939 43.55
517 Yangtze River dolphin (v1 BGI 2013 refseq) Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 30,713 2,429,212,129 124,797 32,195,939 42.85
518 yellow fever mosquito (LVP_AGWG 2017 genbank) Aedes aegypti GCA_002204515.1_AaegL5.0 6,534 1,870,673,364 229 22,935 53.69
519 yellow-bellied marmot (SJ_83 v2.0 2019) Marmota flaviventris GCF_003676075.2_GSC_YBM_2.0 31,859 2,576,161,375 35,595 52,577,818 33.45
520 yellow-bellied marmot (v1 2018) Marmota flaviventris GCF_003676075.1_ASM367607v1 31,149 2,576,929,359 38,354 56,254,325 33.68
521 yellow-footed antechinus (v1 Samford, QLD, Australia AdamAnt 2021) Antechinus flavipes GCA_016432865.1_AdamAnt 487 3,192,697,873 620 309,002 42.70
522 yellow-throated sandgrouse (BGI_N339 2014 BGI) Pterocles gutturalis GCF_000699245.1_ASM69924v1 58,607 1,069,324,295 48,553 3,605,558 19.26
523 yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017) Seriola lalandi dorsalis GCF_002814215.1_Sedor1 99,598 732,509,836 33,664 16,134,094 25.02
524 zebra finch (v1 Black17 2019 refseq) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
525 zebra finch (v1 Black17 male 2019 genbank) Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
526 zebra shark (hap1 2023 genbank) Stegostoma tigrinum GCA_030684315.1_sSteTig4.hap1 835 3,198,515,386 1,159 17,106,481 64.64
527 zebu cattle (Nelore 2014 genbank) Bos indicus GCA_000247795.2_Bos_indicus_1.0 31 2,673,949,103 6,941,272 204,955,425 43.27
528 zig-zag eel (v1.1 2018) Mastacembelus armatus GCF_900324485.1_fMasArm1.1 126 593,082,472 235 14,056,798 23.45
TOTALS:total assembly count 528 41,040,010 880,950,252,012 33,901,392 26,060,535,412  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 221 assemblies assembly stats track stats
Mammals 608 assemblies assembly stats track stats
Birds 399 assemblies assembly stats track stats
Fishes 425 assemblies assembly stats track stats
other vertebrates 280 assemblies assembly stats track stats
Invertebrates 1114 assemblies assembly stats track stats
Plants 305 assemblies assembly stats track stats
Fungi 918 assemblies assembly stats track stats
Viruses 287 assemblies assembly stats track stats
Bacteria 110 assemblies assembly stats track stats
legacy/superseded 527 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 1067 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 778 assemblies assembly stats track stats