Legacy Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 African clawed frog (2016) Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 108,033 2,718,433,805 216,028 309,709,018 35.96
2 black-legged tick (U.Maryland v1 2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi 2,977 2,296,047,215 0 0 43.15
3 Bolivian squirrel monkey (2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 2,686 2,608,588,537 148,728 131,440,969 44.02
4 China rose (Old Blush v1 2018) Rosa chinensis GCF_002994745.1_RchiOBHm-V2 45 513,854,168 33 3,300 35.16
5 Chinese hamster Cricetulus griseus GCF_003668045.1_CriGri-PICR 1,830 2,368,906,908 4,356 2,853,013 32.76
6 elephant shark (2013) Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 21,204 974,498,586 46,232 37,545,143 36.81
7 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 216 2,297,765,997 872 6,026,660 32.43
8 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 8,123 165,709,965 5,400 3,112,072 24.05
9 giant panda Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 81,467 2,299,509,015 119,126 54,196,184 39.14
10 hooded crow (2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 113 1,042,281,180 27,795 30,616,787 18.24
11 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 239 2,818,974,548 904 79,435,853 43.43
12 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA 8,603 779,469,774 51,440 41,237,672 33.31
13 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 2,012 927,656,957 11,601 10,397,704 19.88
14 malo sina (v1 2012) Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b 2,491 259,907,595 20,693 17,431,658 24.13
15 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 3,073 680,366,784 29,388 38,533,415 27.35
16 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 176 2,647,915,728 581 21,334,956 44.34
17 olive baboon Papio anubis GCF_000264685.3_Panu_3.0 63,235 2,959,373,024 58,981 22,371,497 52.12
18 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 1,313 900,477,767 94 24,999 36.36
19 platypus (2019 v1) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 305 1,858,552,590 522 15,159,818 50.97
20 Siamese fighting fish (v2 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
21 silvery gibbon Hylobates moloch GCF_009828535.1_HMol 18,392 2,340,327,933 18,567 42,111,658 49.74
22 soybean (US DOE JGI-PGF v1 2018) Glycine max GCF_000004515.5_Glycine_max_v2.1 1,192 979,046,046 15,995 23,113,809 45.31
23 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 35,974 3,174,693,010 201,403 243,153,308 39.48
24 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 12,483 2,478,393,770 141,005 167,333,470 33.26
25 Ugandan red Colobus Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 47,449 3,038,007,327 63,620 88,304,875 50.19
26 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 1,763 2,474,071,336 79 18,851 33.02
27 white-tufted-ear marmoset Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 14,205 2,914,958,544 187,214 162,452,744 45.93
28 white-tufted-ear marmoset Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 962 2,889,579,754 370 37,607,402 48.82
29 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 3,744 1,110,963,465 102 38,956 20.58
30 woodchuck Marmota monax GCA_901343595.1_MONAX5 48,511 2,625,891,882 57,045 74,045,625 32.84
31 Yangtze finless porpoise (v1) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 13,699 2,284,628,084 52,647 16,346,815 41.77
32 yellow-bellied marmot Marmota flaviventris GCF_003676075.1_ASM367607v1 31,149 2,576,929,359 38,354 56,254,325 32.75
33 zebra finch (v1 2019) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
TOTALS:total assembly count 33 537,869 61,505,181,289 1,519,815 1,734,576,075  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 31 assemblies assembly stats track stats
Mammals 157 assemblies assembly stats track stats
Birds 86 assemblies assembly stats track stats
Fishes 121 assemblies assembly stats track stats
other vertebrates 45 assemblies assembly stats track stats
Invertebrates 249 assemblies assembly stats track stats
Plants 138 assemblies assembly stats track stats
Fungi 390 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 210 assemblies assembly stats track stats
legacy/superseded 33 assemblies assembly stats track stats