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Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Acinetobacter baumannii (17978UN 2021) GCF_019356215.1 |
n/a | n/a | n/a | n/a | 38.90 (100.00 %) |
n/a | 4 (100.00 %) |
n/a | 112 (0.39 %) |
23,675 (11.89 %) |
55 (1.10 %) |
| 2 | Acinetobacter baumannii (ATCC 17978 2021) GCA_902728005.1 |
n/a | n/a | n/a | n/a | 38.90 (100.00 %) |
n/a | 4 (100.00 %) |
n/a | 115 (0.39 %) |
22,872 (11.47 %) |
53 (1.10 %) |
| 3 | Acinetobacter baumannii (ATCC 19606 2016) GCA_900011295.1 |
n/a | n/a | n/a | n/a | 39.06 (99.99 %) |
2 (0.00 %) |
116 (100.00 %) |
n/a | 134 (0.56 %) |
22,549 (11.48 %) |
46 (0.85 %) |
| 4 | Actinobacillus pleuropneumoniae serovar 5b (L20 2007) GCA_000015885.1 |
n/a | n/a | n/a | n/a | 41.30 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 62 (0.39 %) |
11,379 (9.68 %) |
0 (0.00 %) |
| 5 | Anaplasma phagocytophilum str. (HGE1 2013) GCA_000478425.1 |
n/a | n/a | n/a | n/a | 41.63 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 81 (1.57 %) |
2,625 (6.01 %) |
23 (0.57 %) |
| 6 | Arthrobacter sp. SLBN-53 (NRRL B-3805 2016) GCA_001580405.1 |
n/a | n/a | n/a | n/a | 66.89 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 424 (0.41 %) |
44,060 (18.81 %) |
1 (100.00 %) |
| 7 | Bacillus mojavensis (PS17 2020) GCA_016413745.1 |
n/a | n/a | n/a | n/a | 43.87 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 75 (0.20 %) |
23,826 (11.33 %) |
197 (2.85 %) |
| 8 | Bacillus subtilis strain 168 GCF_000009045.1 |
n/a | n/a | n/a | n/a | 43.51 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 55 (0.10 %) |
23,994 (11.04 %) |
232 (3.62 %) |
| 9 | Bacillus subtilis (NCD-2 2017) GCA_002556525.1 |
n/a | n/a | n/a | n/a | 43.53 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 64 (0.12 %) |
23,678 (11.00 %) |
227 (3.62 %) |
| 10 | Burkholderia multivorans (ATCC 17616 2007) GCA_000018505.1 |
n/a | n/a | n/a | n/a | 66.69 (100.00 %) |
n/a | 4 (100.00 %) |
n/a | 769 (0.91 %) |
72,959 (35.08 %) |
4 (100.00 %) |
| 11 | Clostridium beijerinckii (DSM 791 2021) GCF_018223745.1 |
n/a | n/a | n/a | n/a | 29.87 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 364 (0.57 %) |
50,825 (22.06 %) |
48 (0.88 %) |
| 12 | Clostridium butyricum (DSM 10702 2020) GCA_014131795.1 |
n/a | n/a | n/a | n/a | 28.74 (100.00 %) |
n/a | 4 (100.00 %) |
n/a | 297 (0.36 %) |
45,671 (25.32 %) |
37 (0.56 %) |
| 13 | Clostridium saccharoperbutylacetonicum N1-4HMT (ATCC 27021 2013) GCF_000334435.1 |
n/a | n/a | n/a | n/a | 29.43 (99.99 %) |
2 (0.00 %) |
212 (100.00 %) |
n/a | 401 (0.42 %) |
57,640 (22.92 %) |
7 (0.08 %) |
| 14 | Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 DOE-JGI) GCF_000429805.1 |
n/a | n/a | n/a | n/a | 30.84 (99.97 %) |
1 (0.03 %) |
45 (99.97 %) |
n/a | 150 (0.23 %) |
26,457 (21.36 %) |
4 (0.08 %) |
| 15 | Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Nanjing Univ. of Technology) GCF_000359585.1 |
n/a | n/a | n/a | n/a | 30.84 (100.00 %) |
n/a | 76 (100.00 %) |
n/a | 164 (0.26 %) |
26,260 (21.27 %) |
3 (0.08 %) |
| 16 | Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2015 Tokyo Univ. Marine Science and Technology) GCA_000974305.1 |
n/a | n/a | n/a | n/a | 31.78 (99.94 %) |
7 (0.00 %) |
704 (100.00 %) |
n/a | 89 (0.14 %) |
20,221 (18.24 %) |
3 (0.09 %) |
| 17 | Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Univ. Cattolica del Sacro Cuore) GCF_000392375.2 |
n/a | n/a | n/a | n/a | 30.82 (99.99 %) |
n/a | 174 (100.00 %) |
n/a | 142 (0.20 %) |
26,073 (21.16 %) |
5 (0.09 %) |
| 18 | Clostridium tyrobutyricum (KCTC 5387 2016 KAIST) GCF_001642655.1 |
n/a | n/a | n/a | n/a | 31.01 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 163 (0.26 %) |
27,424 (21.32 %) |
20 (0.48 %) |
| 19 | Corynebacterium glutamicum (ATCC 13032 2004) GCA_000011325.1 |
n/a | n/a | n/a | n/a | 53.81 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 118 (0.18 %) |
8,376 (4.25 %) |
1 (99.99 %) |
| 20 | Desulfovibrio desulfuricans (DSM 642 2013) GCA_000420465.1 |
n/a | n/a | n/a | n/a | 57.36 (100.00 %) |
n/a | 20 (100.00 %) |
n/a | 63 (0.09 %) |
21,875 (12.13 %) |
51 (97.19 %) |
| 21 | Desulfovibrio vulgaris str. (Hildenborough 2004) GCA_000195755.1 |
n/a | n/a | n/a | n/a | 63.28 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 241 (0.36 %) |
18,967 (8.89 %) |
2 (100.00 %) |
| 22 | E. coli (B C2566 2016) GCF_001559615.2 |
n/a | n/a | n/a | n/a | 50.81 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 78 (0.39 %) |
18,625 (7.36 %) |
1 (100.00 %) |
| 23 | E. coli (B C3029 2016) GCF_001559635.1 |
n/a | n/a | n/a | n/a | 50.82 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 77 (0.38 %) |
18,158 (6.98 %) |
1 (100.00 %) |
| 24 | E. coli (BE104 2019) GCF_005890115.1 |
n/a | n/a | n/a | n/a | 50.76 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 102 (0.49 %) |
19,984 (7.40 %) |
1 (99.99 %) |
| 25 | E. coli (BL21(DE3) 2010) GCA_000022665.2 |
n/a | n/a | n/a | n/a | 50.83 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 77 (0.38 %) |
18,815 (7.35 %) |
1 (99.99 %) |
| 26 | E. coli (K-12 BW25113 2014 refseq) GCF_000750555.1 |
n/a | n/a | n/a | n/a | 50.78 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 90 (0.38 %) |
19,508 (7.44 %) |
1 (99.99 %) |
| 27 | E. coli (K-12 C3026 2016) GCF_001559675.1 |
n/a | n/a | n/a | n/a | 50.76 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 102 (0.44 %) |
20,688 (7.36 %) |
12 (99.19 %) |
| 28 | E. coli (K-12 DHB4 2016) GCF_001559655.1 |
n/a | n/a | n/a | n/a | 50.73 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 100 (0.44 %) |
20,468 (7.59 %) |
2 (99.99 %) |
| 29 | E. coli (K-12 MG1655 2013 refseq) GCF_000005845.2 |
n/a | n/a | n/a | n/a | 50.79 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 93 (0.40 %) |
19,730 (7.53 %) |
1 (99.99 %) |
| 30 | E. coli (Nissle 1917 2014) GCA_000714595.1 |
n/a | n/a | n/a | n/a | 50.58 (100.00 %) |
79 (0.00 %) |
80 (100.00 %) |
n/a | 183 (1.59 %) |
18,242 (6.52 %) |
1 (99.97 %) |
| 31 | Janthinobacterium (BJB312 2017) GCA_002735715.1 |
n/a | n/a | n/a | n/a | 62.61 (100.00 %) |
n/a | 38 (100.00 %) |
n/a | 324 (0.49 %) |
60,023 (25.47 %) |
40 (99.53 %) |
| 32 | Janthinobacterium (BJB1 2017) GCA_002735775.2 |
n/a | n/a | n/a | n/a | 63.35 (100.00 %) |
n/a | 56 (100.00 %) |
n/a | 326 (0.37 %) |
62,065 (27.35 %) |
53 (99.81 %) |
| 33 | Klebsiella aerogenes (KCTC 2190 2011) GCA_000215745.1 |
n/a | n/a | n/a | n/a | 54.85 (100.00 %) |
1 (0.00 %) |
2 (100.00 %) |
n/a | 121 (0.42 %) |
34,291 (14.01 %) |
8 (99.38 %) |
| 34 | Klebsiella pneumoniae (ATCC BAA-2146 2016) GCA_000364385.3 |
n/a | n/a | n/a | n/a | 56.97 (100.00 %) |
n/a | 5 (100.00 %) |
n/a | 120 (0.47 %) |
42,179 (16.44 %) |
33 (99.46 %) |
| 35 | Lacticaseibacillus paracasei (LC2W 2011) GCA_000194785.1 |
n/a | n/a | n/a | n/a | 46.31 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 59 (0.29 %) |
10,445 (5.82 %) |
53 (0.81 %) |
| 36 | Lactobacillus kefiranofaciens (KR 2017) GCA_002276565.1 |
n/a | n/a | n/a | n/a | 37.40 (99.99 %) |
n/a | 97 (100.00 %) |
n/a | 106 (0.37 %) |
12,540 (11.80 %) |
27 (0.61 %) |
| 37 | Lactobacillus kefiranofaciens (ATCC 43761 2016) GCA_900103655.1 |
n/a | n/a | n/a | n/a | 37.21 (99.99 %) |
2 (0.01 %) |
84 (100.00 %) |
n/a | 112 (0.27 %) |
12,848 (11.34 %) |
27 (0.54 %) |
| 38 | Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2014) GCA_000615685.1 |
n/a | n/a | n/a | n/a | 37.21 (99.99 %) |
n/a | 123 (100.00 %) |
n/a | 115 (0.27 %) |
12,912 (11.58 %) |
28 (0.57 %) |
| 39 | Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2015) GCA_001435275.1 |
n/a | n/a | n/a | n/a | 37.22 (99.99 %) |
10 (0.00 %) |
133 (100.00 %) |
n/a | 117 (0.30 %) |
12,967 (11.63 %) |
28 (0.56 %) |
| 40 | Lactobacillus kefiranofaciens (ASM143419v1 JCM 8572 DSM 10550 2015) GCA_001434195.1 |
n/a | n/a | n/a | n/a | 37.47 (99.97 %) |
6 (0.01 %) |
138 (100.00 %) |
n/a | 81 (0.24 %) |
11,892 (11.46 %) |
30 (0.69 %) |
| 41 | Lactobacillus kefiranofaciens (ASM131133v1 JCM 8572 JSM 10550 2015) GCA_001311335.1 |
n/a | n/a | n/a | n/a | 37.41 (99.99 %) |
n/a | 104 (100.00 %) |
n/a | 78 (0.24 %) |
11,724 (11.51 %) |
29 (0.68 %) |
| 42 | Lactobacillus kefiranofaciens (LKK75 2019) GCA_009184665.1 |
n/a | n/a | n/a | n/a | 37.38 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 113 (0.28 %) |
13,039 (11.33 %) |
30 (1.19 %) |
| 43 | Lactobacillus kefiranofaciens (ZW3 2011) GCA_000214785.1 |
n/a | n/a | n/a | n/a | 37.36 (100.00 %) |
n/a | 3 (100.00 %) |
n/a | 120 (0.29 %) |
12,963 (11.07 %) |
31 (1.17 %) |
| 44 | Lactococcus lactis (IL1403 2018) GCA_003722275.1 |
n/a | n/a | n/a | n/a | 35.33 (100.00 %) |
1 (0.00 %) |
2 (100.00 %) |
n/a | 85 (0.42 %) |
17,438 (16.62 %) |
32 (0.72 %) |
| 45 | Leuconostoc citreum (KM20 2008) GCA_000026405.1 |
n/a | n/a | n/a | n/a | 38.87 (100.00 %) |
n/a | 5 (100.00 %) |
n/a | 48 (0.46 %) |
8,656 (8.35 %) |
19 (1.37 %) |
| 46 | Limosilactobacillus fermentum AGR1485 GCF_011032765.1 |
n/a | n/a | n/a | n/a | 51.15 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 68 (1.17 %) |
5,312 (5.45 %) |
1 (99.98 %) |
| 47 | Limosilactobacillus fermentum AGR1487 GCF_011032745.1 |
n/a | n/a | n/a | n/a | 52.17 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 43 (0.27 %) |
5,358 (4.69 %) |
0 (0.00 %) |
| 48 | Limosilactobacillus fermentum SRCM 103290 GCF_004063635.1 |
n/a | n/a | n/a | n/a | 51.37 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 61 (0.23 %) |
5,590 (4.50 %) |
1 (97.52 %) |
| 49 | Limosilactobacillus fermentum YL-11 GCF_003860425.1 |
n/a | n/a | n/a | n/a | 51.94 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 46 (0.65 %) |
5,855 (5.79 %) |
1 (99.97 %) |
| 50 | Lysinibacillus sphaericus (C3-41 2008) GCA_000017965.1 |
n/a | n/a | n/a | n/a | 37.13 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 121 (0.31 %) |
30,334 (12.48 %) |
21 (1.17 %) |
| 51 | Methylorubrum extorquens (CM4 2008) GCA_000021845.1 |
n/a | n/a | n/a | n/a | 68.08 (100.00 %) |
n/a | 3 (100.00 %) |
n/a | 361 (0.37 %) |
55,843 (22.73 %) |
3 (100.00 %) |
| 52 | Mycobacterium avium (hominissuis A5 2014) GCF_000696715.1 |
n/a | n/a | n/a | n/a | 69.40 (100.00 %) |
n/a | 50 (100.00 %) |
n/a | 550 (0.52 %) |
51,968 (27.34 %) |
50 (99.99 %) |
| 53 | Mycobacterium palustre (DSM 44572 2017) GCF_002101785.1 |
n/a | n/a | n/a | n/a | 68.50 (99.99 %) |
n/a | 158 (100.00 %) |
n/a | 585 (0.53 %) |
55,559 (24.92 %) |
158 (99.93 %) |
| 54 | Mycobacterium sp. (VKM Ac-1817D 2014) GCA_000416365.2 |
n/a | n/a | n/a | n/a | 66.20 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 261 (0.21 %) |
49,141 (17.12 %) |
1 (100.00 %) |
| 55 | Mycobacterium tuberculosis (ASM19595v2 H37Rv 2013) GCF_000195955.2 |
n/a | n/a | n/a | n/a | 65.61 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 1,059 (1.47 %) |
34,168 (17.69 %) |
1 (100.00 %) |
| 56 | Mycobacterium tuberculosis (ASM27773v2 H37Rv 2013) GCA_000277735.2 |
n/a | n/a | n/a | n/a | 65.62 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 1,067 (1.49 %) |
34,174 (17.70 %) |
1 (100.00 %) |
| 57 | Neisseria meningitidis (Z2491 2003) GCA_000009105.1 |
n/a | n/a | n/a | n/a | 51.81 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 190 (1.51 %) |
13,500 (15.34 %) |
1 (99.91 %) |
| 58 | Nitratireductor (SY7 2020) GCA_007922615.2 |
n/a | n/a | n/a | n/a | 64.89 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 129 (0.29 %) |
43,679 (19.65 %) |
1 (100.00 %) |
| 59 | Nitrosomonas europaea (ATCC 19718 2003) GCA_000009145.1 |
n/a | n/a | n/a | n/a | 50.72 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 68 (0.39 %) |
8,683 (6.11 %) |
1 (99.98 %) |
| 60 | Pectobacterium brasiliense (1692 2020) GCA_009873295.1 |
n/a | n/a | n/a | n/a | 52.15 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 157 (0.66 %) |
21,754 (7.97 %) |
1 (100.00 %) |
| 61 | Plasmodium malariae (2016) GCF_900090045.1 |
5,965 (37.07 %) |
n/a | n/a | n/a | 24.38 (100.00 %) |
n/a | 62 (100.00 %) |
n/a | 47,855 (7.58 %) |
320,327 (54.68 %) |
21 (0.02 %) |
| 62 | Pseudomonas aeruginosa (PAO1 2006) GCF_000006765.1 |
n/a | n/a | n/a | n/a | 66.56 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 208 (0.43 %) |
58,643 (23.70 %) |
1 (100.00 %) |
| 63 | Pseudomonas fluorescens (SBW25 2009) GCF_000009225.2 |
n/a | n/a | n/a | n/a | 60.50 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 225 (0.43 %) |
44,434 (14.25 %) |
0 (0.00 %) |
| 64 | Rhodococcus erythropolis (CCM2595 2013) GCA_000454045.1 |
n/a | n/a | n/a | n/a | 62.45 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 461 (0.39 %) |
37,291 (12.05 %) |
2 (100.00 %) |
| 65 | Salmonella enterica (Typhimurium LT2 2016) GCF_000006945.2 |
n/a | n/a | n/a | n/a | 52.24 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 77 (0.25 %) |
25,684 (9.55 %) |
2 (99.99 %) |
| 66 | Salmonella enterica subsp. enterica serovar Typhimurium str. (14028S 2009) GCA_000022165.1 |
n/a | n/a | n/a | n/a | 52.21 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 80 (0.24 %) |
25,976 (9.65 %) |
2 (99.99 %) |
| 67 | Shigella flexneri 5a (M90T 2019) GCA_004799585.1 |
n/a | n/a | n/a | n/a | 50.67 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 76 (0.22 %) |
13,570 (7.88 %) |
19 (97.31 %) |
| 68 | Staphylococcus aureus (JE2 2017) GCA_002085525.1 |
n/a | n/a | n/a | n/a | 32.78 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 138 (1.03 %) |
22,355 (16.38 %) |
11 (0.54 %) |
| 69 | Starmerella bacillaris (NP2 2017) GCA_002270425.1 |
n/a | 1,225 (9.91 %) |
n/a | n/a | 39.47 (99.93 %) |
145 (0.07 %) |
117 (100.00 %) |
n/a | 3,747 (1.49 %) |
39,377 (10.61 %) |
450 (3.65 %) |
| 70 | Streptomyces ambofaciens (ATCC 23877 2015) GCF_001267885.1 |
n/a | n/a | n/a | n/a | 72.19 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 2,423 (1.48 %) |
74,062 (23.83 %) |
2 (100.00 %) |
| 71 | Streptomyces ambofaciens (DSM 40697 2016) GCF_001632865.1 |
n/a | n/a | n/a | n/a | 72.33 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 2,321 (1.52 %) |
72,368 (23.98 %) |
1 (100.00 %) |
| 72 | Streptomyces bottropensis (ATCC 25435 2013) GCA_000383595.1 |
n/a | n/a | n/a | n/a | 71.19 (100.00 %) |
7 (0.00 %) |
4 (100.00 %) |
n/a | 2,224 (1.21 %) |
78,043 (22.95 %) |
1 (100.00 %) |
| 73 | Stutzerimonas degradans (XL272 2019) GCA_009740185.1 |
n/a | n/a | n/a | n/a | 64.69 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 77 (0.17 %) |
35,942 (20.69 %) |
1 (100.00 %) |
| TOTALS: | total assembly count 73 | |||||||||||
| Additional hubs with collections of assemblies | |||
|---|---|---|---|
| Collection | Hub index pages: | Assembly statistics: | Track statistics: |
| Primates | 200 assemblies | assembly stats | track stats |
| Mammals | 481 assemblies | assembly stats | track stats |
| Birds | 299 assemblies | assembly stats | track stats |
| Fishes | 335 assemblies | assembly stats | track stats |
| other vertebrates | 167 assemblies | assembly stats | track stats |
| Invertebrates | 628 assemblies | assembly stats | track stats |
| Plants | 249 assemblies | assembly stats | track stats |
| Fungi | 612 assemblies | assembly stats | track stats |
| Viruses | 264 assemblies | assembly stats | track stats |
| Bacteria | 73 assemblies | assembly stats | track stats |
| legacy/superseded | 399 assemblies | assembly stats | track stats |
| collections below are subsets of the assemblies above | |||
| VGP - Vertebrate Genome Project | 651 assemblies | assembly stats | track stats |
| CCGP - The California Conservation Genomics Project | 126 assemblies | assembly stats | track stats |
| HPRC - Human Pangenome Reference Consortium | 96 assemblies | assembly stats | track stats |