Bacteria Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base gaps assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 cpg
islands
1 Acinetobacter baumannii (17978UN 2021)
GCF_019356215.1		 n/a n/a n/a n/a 38.90
(100.00 %)		 n/a 4
(100.00 %)		 n/a 112
(0.39 %)		 23,675
(11.89 %)		 55
(1.10 %)
2 Bacillus subtilis strain 168
GCF_000009045.1		 n/a n/a n/a n/a 43.51
(100.00 %)		 n/a 1
(100.00 %)		 n/a 55
(0.10 %)		 23,994
(11.04 %)		 232
(3.62 %)
3 E. coli (B C2566 2016)
GCF_001559615.2		 n/a n/a n/a n/a 50.81
(100.00 %)		 n/a 1
(100.00 %)		 n/a 78
(0.39 %)		 18,625
(7.36 %)		 1
(100.00 %)
4 E. coli (B C3029 2016)
GCF_001559635.1		 n/a n/a n/a n/a 50.82
(100.00 %)		 n/a 1
(100.00 %)		 n/a 77
(0.38 %)		 18,158
(6.98 %)		 1
(100.00 %)
5 E. coli (BE104 2019)
GCF_005890115.1		 n/a n/a n/a n/a 50.76
(100.00 %)		 n/a 1
(100.00 %)		 n/a 102
(0.49 %)		 19,984
(7.40 %)		 1
(99.99 %)
6 E. coli (K-12 BW25113 2014 refseq)
GCF_000750555.1		 n/a n/a n/a n/a 50.78
(100.00 %)		 n/a 1
(100.00 %)		 n/a 90
(0.38 %)		 19,508
(7.44 %)		 1
(99.99 %)
7 E. coli (K-12 C3026 2016)
GCF_001559675.1		 n/a n/a n/a n/a 50.76
(100.00 %)		 n/a 2
(100.00 %)		 n/a 102
(0.44 %)		 20,688
(7.36 %)		 12
(99.19 %)
8 E. coli (K-12 DHB4 2016)
GCF_001559655.1		 n/a n/a n/a n/a 50.73
(100.00 %)		 n/a 2
(100.00 %)		 n/a 100
(0.44 %)		 20,468
(7.59 %)		 2
(99.99 %)
9 E. coli (K-12 MG1655 2013)
GCF_000005845.2		 n/a n/a n/a n/a 50.79
(100.00 %)		 n/a 1
(100.00 %)		 n/a 93
(0.40 %)		 19,730
(7.53 %)		 1
(99.99 %)
10 Limosilactobacillus fermentum YL-11
GCF_003860425.1		 n/a n/a n/a n/a 51.94
(100.00 %)		 n/a 1
(100.00 %)		 n/a 46
(0.65 %)		 5,855
(5.79 %)		 1
(99.97 %)
11 Limosilactobacillus fermentum SRCM 103290
GCF_004063635.1		 n/a n/a n/a n/a 51.37
(100.00 %)		 n/a 1
(100.00 %)		 n/a 61
(0.23 %)		 5,590
(4.50 %)		 1
(97.52 %)
12 Limosilactobacillus fermentum AGR1487
GCF_011032745.1		 n/a n/a n/a n/a 52.17
(100.00 %)		 n/a 1
(100.00 %)		 n/a 43
(0.27 %)		 5,358
(4.69 %)		 0
(0.00 %)
13 Limosilactobacillus fermentum AGR1485
GCF_011032765.1		 n/a n/a n/a n/a 51.15
(100.00 %)		 n/a 1
(100.00 %)		 n/a 68
(1.17 %)		 5,312
(5.45 %)		 1
(99.98 %)
14 Mycobacterium avium (hominissuis A5 2014)
GCF_000696715.1		 n/a n/a n/a n/a 69.40
(100.00 %)		 n/a 50
(100.00 %)		 n/a 550
(0.52 %)		 51,968
(27.34 %)		 50
(99.99 %)
15 Mycobacterium palustre (DSM 44572 2017)
GCF_002101785.1		 n/a n/a n/a n/a 68.50
(99.99 %)		 n/a 158
(100.00 %)		 n/a 585
(0.53 %)		 55,559
(24.92 %)		 158
(99.93 %)
16 Mycobacterium tuberculosis (H37Rv 2013)
GCF_000195955.2		 n/a n/a n/a n/a 65.61
(100.00 %)		 n/a 1
(100.00 %)		 n/a 1,059
(1.47 %)		 34,168
(17.69 %)		 1
(100.00 %)
17 Plasmodium malariae (2016)
GCF_900090045.1		 5,965
(37.07 %)		 n/a n/a n/a 24.38
(100.00 %)		 n/a 62
(100.00 %)		 n/a 47,855
(7.58 %)		 320,327
(54.68 %)		 21
(0.02 %)
18 Pseudomonas aeruginosa (PAO1 2006)
GCF_000006765.1		 n/a n/a n/a n/a 66.56
(100.00 %)		 n/a 1
(100.00 %)		 n/a 208
(0.43 %)		 58,643
(23.70 %)		 1
(100.00 %)
19 Pseudomonas fluorescens (SBW25 2009)
GCF_000009225.2		 n/a n/a n/a n/a 60.50
(100.00 %)		 n/a 1
(100.00 %)		 n/a 225
(0.43 %)		 44,434
(14.25 %)		 0
(0.00 %)
20 Salmonella enterica (Typhimurium LT2 2016)
GCF_000006945.2		 n/a n/a n/a n/a 52.24
(100.00 %)		 n/a 2
(100.00 %)		 n/a 77
(0.25 %)		 25,684
(9.55 %)		 2
(99.99 %)
TOTALS:total assembly count 20

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 60 assemblies assembly stats track stats
Mammals 356 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 76 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 175 assemblies assembly stats track stats
Fungi 464 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 20 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 295 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats