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Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.
count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | Acinetobacter baumannii (17978UN 2021) GCF_019356215.1 |
n/a | n/a | n/a | n/a | 38.90 (100.00 %) |
n/a | 4 (100.00 %) |
n/a | 112 (0.39 %) |
23,675 (11.89 %) |
55 (1.10 %) |
2 | Bacillus subtilis strain 168 GCF_000009045.1 |
n/a | n/a | n/a | n/a | 43.51 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 55 (0.10 %) |
23,994 (11.04 %) |
232 (3.62 %) |
3 | E. coli (B C2566 2016) GCF_001559615.2 |
n/a | n/a | n/a | n/a | 50.81 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 78 (0.39 %) |
18,625 (7.36 %) |
1 (100.00 %) |
4 | E. coli (B C3029 2016) GCF_001559635.1 |
n/a | n/a | n/a | n/a | 50.82 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 77 (0.38 %) |
18,158 (6.98 %) |
1 (100.00 %) |
5 | E. coli (BE104 2019) GCF_005890115.1 |
n/a | n/a | n/a | n/a | 50.76 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 102 (0.49 %) |
19,984 (7.40 %) |
1 (99.99 %) |
6 | E. coli (K-12 BW25113 2014 refseq) GCF_000750555.1 |
n/a | n/a | n/a | n/a | 50.78 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 90 (0.38 %) |
19,508 (7.44 %) |
1 (99.99 %) |
7 | E. coli (K-12 C3026 2016) GCF_001559675.1 |
n/a | n/a | n/a | n/a | 50.76 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 102 (0.44 %) |
20,688 (7.36 %) |
12 (99.19 %) |
8 | E. coli (K-12 DHB4 2016) GCF_001559655.1 |
n/a | n/a | n/a | n/a | 50.73 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 100 (0.44 %) |
20,468 (7.59 %) |
2 (99.99 %) |
9 | E. coli (K-12 MG1655 2013) GCF_000005845.2 |
n/a | n/a | n/a | n/a | 50.79 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 93 (0.40 %) |
19,730 (7.53 %) |
1 (99.99 %) |
10 | Limosilactobacillus fermentum YL-11 GCF_003860425.1 |
n/a | n/a | n/a | n/a | 51.94 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 46 (0.65 %) |
5,855 (5.79 %) |
1 (99.97 %) |
11 | Limosilactobacillus fermentum SRCM 103290 GCF_004063635.1 |
n/a | n/a | n/a | n/a | 51.37 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 61 (0.23 %) |
5,590 (4.50 %) |
1 (97.52 %) |
12 | Limosilactobacillus fermentum AGR1487 GCF_011032745.1 |
n/a | n/a | n/a | n/a | 52.17 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 43 (0.27 %) |
5,358 (4.69 %) |
0 (0.00 %) |
13 | Limosilactobacillus fermentum AGR1485 GCF_011032765.1 |
n/a | n/a | n/a | n/a | 51.15 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 68 (1.17 %) |
5,312 (5.45 %) |
1 (99.98 %) |
14 | Mycobacterium avium (hominissuis A5 2014) GCF_000696715.1 |
n/a | n/a | n/a | n/a | 69.40 (100.00 %) |
n/a | 50 (100.00 %) |
n/a | 550 (0.52 %) |
51,968 (27.34 %) |
50 (99.99 %) |
15 | Mycobacterium palustre (DSM 44572 2017) GCF_002101785.1 |
n/a | n/a | n/a | n/a | 68.50 (99.99 %) |
n/a | 158 (100.00 %) |
n/a | 585 (0.53 %) |
55,559 (24.92 %) |
158 (99.93 %) |
16 | Mycobacterium tuberculosis (H37Rv 2013) GCF_000195955.2 |
n/a | n/a | n/a | n/a | 65.61 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 1,059 (1.47 %) |
34,168 (17.69 %) |
1 (100.00 %) |
17 | Plasmodium malariae (2016) GCF_900090045.1 |
5,965 (37.07 %) |
n/a | n/a | n/a | 24.38 (100.00 %) |
n/a | 62 (100.00 %) |
n/a | 47,855 (7.58 %) |
320,327 (54.68 %) |
21 (0.02 %) |
18 | Pseudomonas aeruginosa (PAO1 2006) GCF_000006765.1 |
n/a | n/a | n/a | n/a | 66.56 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 208 (0.43 %) |
58,643 (23.70 %) |
1 (100.00 %) |
19 | Pseudomonas fluorescens (SBW25 2009) GCF_000009225.2 |
n/a | n/a | n/a | n/a | 60.50 (100.00 %) |
n/a | 1 (100.00 %) |
n/a | 225 (0.43 %) |
44,434 (14.25 %) |
0 (0.00 %) |
20 | Salmonella enterica (Typhimurium LT2 2016) GCF_000006945.2 |
n/a | n/a | n/a | n/a | 52.24 (100.00 %) |
n/a | 2 (100.00 %) |
n/a | 77 (0.25 %) |
25,684 (9.55 %) |
2 (99.99 %) |
TOTALS: | total assembly count 20 |
Additional hubs with collections of assemblies | |||
---|---|---|---|
Collection | Hub index pages: | Assembly statistics: | Track statistics: |
Primates | 60 assemblies | assembly stats | track stats |
Mammals | 356 assemblies | assembly stats | track stats |
Birds | 175 assemblies | assembly stats | track stats |
Fishes | 195 assemblies | assembly stats | track stats |
other vertebrates | 76 assemblies | assembly stats | track stats |
Invertebrates | 470 assemblies | assembly stats | track stats |
Plants | 175 assemblies | assembly stats | track stats |
Fungi | 464 assemblies | assembly stats | track stats |
Viruses | 254 assemblies | assembly stats | track stats |
Bacteria | 20 assemblies | assembly stats | track stats |
VGP - Vertebrate Genome Project | 295 assemblies | assembly stats | track stats |
legacy/superseded | 242 assemblies | assembly stats | track stats |