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Assemblies from NCBI/Genbank/Refseq sources, subset of CCGP only.
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | acorn woodpecker (bairdi alternate hap 2022) GCA_026170555.1 |
n/a | 12,415 (1.42 %) |
23,266 (1.78 %) |
n/a | 46.76 (99.99 %) |
1,555 (0.01 %) |
2,294 (100.00 %) |
1,077,039 (17.72 %) |
548,450 (13.79 %) |
4,965,697 (43.00 %) |
29,460 (3.04 %) |
| 2 | acorn woodpecker (bairdi primary hap 2022) GCA_026170545.1 |
n/a | 11,832 (1.45 %) |
22,508 (1.87 %) |
n/a | 46.81 (99.99 %) |
1,317 (0.01 %) |
4,491 (99.99 %) |
980,493 (17.23 %) |
496,946 (14.39 %) |
5,155,337 (42.38 %) |
28,236 (3.22 %) |
| 3 | American black bear (L20-20 alternate hap 2022) GCA_024610745.1 |
n/a | 22,502 (1.17 %) |
43,431 (1.28 %) |
n/a | 43.14 (99.99 %) |
n/a | 77,311 (100.00 %) |
4,587,986 (32.30 %) |
773,829 (6.39 %) |
14,594,034 (35.67 %) |
78,849 (3.32 %) |
| 4 | American black bear (L20-20 primary hap 2022) GCA_024610735.1 |
n/a | 18,458 (1.52 %) |
21,049 (1.43 %) |
n/a | 42.93 (100.00 %) |
22 (0.00 %) |
317 (100.00 %) |
4,000,508 (32.69 %) |
641,903 (5.91 %) |
13,210,530 (35.54 %) |
68,981 (3.00 %) |
| 5 | American ruby spot damselfly (1083.01 alternate hap 2022) GCA_022747625.1 |
n/a | 3,675 (0.24 %) |
33,858 (2.52 %) |
n/a | 39.41 (100.00 %) |
275 (0.00 %) |
434 (100.00 %) |
463,699 (1.98 %) |
257,776 (2.34 %) |
8,739,499 (35.06 %) |
201,740 (9.34 %) |
| 6 | American ruby spot damselfly (1083.01 primary hap 2022) GCA_022747635.1 |
n/a | 4,050 (0.23 %) |
36,621 (2.36 %) |
n/a | 39.19 (100.00 %) |
300 (0.00 %) |
1,583 (100.00 %) |
512,232 (1.96 %) |
298,634 (6.12 %) |
9,487,572 (38.81 %) |
220,796 (9.19 %) |
| 7 | ant C.vicinus (PSW18456_S1 2022) GCA_025532165.1 |
n/a | 4,276 (1.43 %) |
33,329 (10.19 %) |
n/a | 34.73 (100.00 %) |
24 (0.00 %) |
38 (100.00 %) |
262,917 (4.71 %) |
237,812 (4.84 %) |
1,978,871 (41.33 %) |
12,644 (3.51 %) |
| 8 | arroyo chub (AC-1 alternate hap 2022) GCA_026230005.1 |
n/a | 17,862 (2.29 %) |
70,667 (5.50 %) |
n/a | 40.01 (100.00 %) |
327 (0.00 %) |
179 (100.00 %) |
2,876,989 (50.39 %) |
700,511 (9.88 %) |
5,977,913 (44.08 %) |
104,320 (8.02 %) |
| 9 | arroyo chub (AC-1 primary hap 2022) GCA_026230025.1 |
n/a | 18,025 (2.28 %) |
71,255 (5.50 %) |
n/a | 40.03 (100.00 %) |
318 (0.00 %) |
341 (100.00 %) |
2,884,301 (50.42 %) |
702,464 (9.98 %) |
5,989,299 (44.18 %) |
105,945 (8.03 %) |
| 10 | bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 alternate hap 2023) GCA_028538565.1 |
n/a | 15,063 (1.43 %) |
65,125 (11.47 %) |
n/a | 40.34 (100.00 %) |
39 (0.00 %) |
197 (100.00 %) |
735,552 (11.30 %) |
567,295 (6.87 %) |
4,176,675 (45.56 %) |
66,834 (4.90 %) |
| 11 | bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 primary hap 2023) GCA_028534965.1 |
n/a | 15,223 (1.43 %) |
65,769 (11.33 %) |
n/a | 40.37 (100.00 %) |
36 (0.00 %) |
303 (100.00 %) |
744,623 (11.37 %) |
571,691 (7.15 %) |
4,217,655 (45.87 %) |
68,566 (4.96 %) |
| 12 | bigberry manzanita (GLNDR_RDG_Rd-6 2022) GCA_019985065.2 |
n/a | 15,102 (2.62 %) |
47,553 (15.64 %) |
n/a | 38.11 (100.00 %) |
82 (0.00 %) |
272 (100.00 %) |
257,066 (2.22 %) |
226,514 (14.63 %) |
2,470,334 (38.37 %) |
21,415 (5.59 %) |
| 13 | bigberry manzanita (GLNDR_RDG_Rd-6 alternate hap 2021) GCA_019985075.1 |
n/a | 13,887 (2.34 %) |
44,507 (14.12 %) |
n/a | 37.97 (100.00 %) |
120 (0.00 %) |
2,350 (100.00 %) |
250,361 (2.10 %) |
231,118 (13.56 %) |
2,049,366 (44.58 %) |
22,527 (6.34 %) |
| 14 | black abalone (W230 alternate hap 2022) GCA_022045225.1 |
n/a | 4,296 (0.30 %) |
40,034 (6.36 %) |
n/a | 40.56 (99.99 %) |
732 (0.01 %) |
1,215 (100.00 %) |
403,535 (1.97 %) |
752,639 (17.06 %) |
6,120,213 (35.12 %) |
76,007 (2.75 %) |
| 15 | black abalone (W230 primary hap 2022) GCA_022045235.1 |
n/a | 4,302 (0.30 %) |
39,190 (6.35 %) |
n/a | 40.58 (100.00 %) |
78 (0.00 %) |
81 (100.00 %) |
394,478 (1.94 %) |
742,250 (16.38 %) |
6,127,971 (34.84 %) |
75,200 (2.69 %) |
| 16 | black cottonwood (Ptri.A.LA.226.w1 alternate hap 2023) GCA_028534865.1 |
n/a | 20,077 (4.66 %) |
43,061 (17.16 %) |
n/a | 34.80 (100.00 %) |
33 (0.00 %) |
338 (100.00 %) |
267,110 (2.88 %) |
173,502 (6.32 %) |
2,366,759 (39.61 %) |
5,093 (4.11 %) |
| 17 | black cottonwood (Ptri.A.LA.226.w1 primary hap 2023) GCA_028534895.1 |
n/a | 19,804 (4.58 %) |
42,642 (17.03 %) |
n/a | 34.85 (100.00 %) |
26 (0.00 %) |
132 (100.00 %) |
265,925 (2.85 %) |
174,688 (6.70 %) |
2,359,101 (40.07 %) |
4,963 (4.10 %) |
| 18 | black perch (LCO1_2020_lvr alternate hap 2022) GCA_022578405.1 |
n/a | 31,847 (2.01 %) |
153,565 (6.53 %) |
n/a | 41.78 (99.99 %) |
639 (0.00 %) |
63,422 (100.00 %) |
2,786,840 (18.28 %) |
1,016,389 (7.50 %) |
8,844,631 (26.90 %) |
130,556 (4.42 %) |
| 19 | black perch (LCO1_2020_lvr primary hap 2022) GCA_022577435.1 |
n/a | 14,991 (3.02 %) |
47,106 (6.98 %) |
n/a | 41.61 (100.00 %) |
234 (0.00 %) |
230 (100.00 %) |
1,017,149 (18.99 %) |
360,899 (8.75 %) |
3,761,526 (28.91 %) |
48,360 (4.43 %) |
| 20 | Blainville's horned lizard (alternate hap 2022) GCA_026167975.1 |
n/a | 12,696 (0.93 %) |
14,818 (1.50 %) |
n/a | 41.27 (100.00 %) |
64 (0.00 %) |
52 (100.00 %) |
1,468,805 (6.73 %) |
739,796 (3.28 %) |
10,900,584 (40.56 %) |
76,786 (1.60 %) |
| 21 | Blainville's horned lizard (primary hap 2022) GCA_026167985.1 |
n/a | 13,944 (0.92 %) |
16,009 (1.45 %) |
n/a | 41.21 (100.00 %) |
73 (0.00 %) |
78 (100.00 %) |
1,636,825 (6.67 %) |
826,053 (3.24 %) |
12,398,166 (40.90 %) |
86,825 (1.61 %) |
| 22 | bobcat (Redwood Valley CCGP_SWC_20201006 alternate hap 2022) GCA_022079275.1 |
n/a | 24,877 (1.23 %) |
48,382 (1.39 %) |
n/a | 42.05 (99.98 %) |
4,716 (0.01 %) |
72,827 (99.99 %) |
6,403,412 (33.31 %) |
1,269,531 (1.94 %) |
17,771,689 (33.82 %) |
100,915 (3.00 %) |
| 23 | bobcat (Redwood Valley CCGP_SWC_20201006 primary hap 2022) GCF_022079265.1 |
45,362 (2.39 %) |
18,576 (1.65 %) |
20,510 (1.41 %) |
n/a | 41.80 (100.00 %) |
24 (0.00 %) |
75 (100.00 %) |
4,970,082 (43.28 %) |
894,002 (1.80 %) |
13,648,384 (34.21 %) |
69,211 (2.68 %) |
| 24 | Botta's pocket gopher (bottae MVZ:Mamm:240275 alternate hap 2022) GCA_024803775.1 |
n/a | 18,647 (0.96 %) |
23,998 (1.13 %) |
n/a | 41.67 (100.00 %) |
124 (0.00 %) |
3,340 (100.00 %) |
3,775,862 (22.40 %) |
1,257,803 (21.71 %) |
9,347,543 (61.85 %) |
33,757 (1.35 %) |
| 25 | Botta's pocket gopher (bottae MVZ:Mamm:240275 primary hap 2022) GCA_024803745.1 |
n/a | 17,791 (1.12 %) |
22,667 (1.29 %) |
n/a | 41.66 (100.00 %) |
106 (0.00 %) |
2,898 (100.00 %) |
6,293,452 (41.30 %) |
1,076,688 (17.94 %) |
8,553,272 (57.13 %) |
31,102 (1.31 %) |
| 26 | California black rail (168171201 alternate hap 2022) GCA_022605925.1 |
n/a | 11,551 (1.57 %) |
22,390 (2.09 %) |
n/a | 44.21 (99.99 %) |
1,672 (0.01 %) |
3,563 (100.00 %) |
465,417 (6.39 %) |
218,050 (11.40 %) |
4,588,632 (30.42 %) |
22,622 (2.16 %) |
| 27 | California black rail (168171201 primary hap 2022) GCA_022605575.1 |
n/a | 12,725 (1.54 %) |
24,572 (2.13 %) |
n/a | 43.81 (100.00 %) |
319 (0.00 %) |
964 (100.00 %) |
522,782 (6.36 %) |
226,563 (14.09 %) |
5,497,483 (32.27 %) |
24,529 (1.77 %) |
| 28 | California black walnut (Jcal.S.LA.6 alternate hap 2022) GCA_023349545.1 |
n/a | 18,729 (3.22 %) |
57,374 (16.70 %) |
n/a | 36.81 (100.00 %) |
78 (0.00 %) |
915 (100.00 %) |
421,731 (3.42 %) |
300,957 (5.54 %) |
2,794,242 (34.11 %) |
25,348 (3.39 %) |
| 29 | California black walnut (Jcal.S.LA.6 primary hap 2022) GCA_023349395.1 |
n/a | 18,579 (3.26 %) |
56,295 (16.71 %) |
n/a | 36.92 (100.00 %) |
11 (0.00 %) |
138 (100.00 %) |
414,129 (3.48 %) |
293,951 (5.95 %) |
3,055,420 (34.96 %) |
24,749 (4.05 %) |
| 30 | California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022) GCA_022578425.1 |
n/a | 13,973 (0.70 %) |
47,231 (2.71 %) |
n/a | 41.26 (99.97 %) |
5,955 (0.03 %) |
60,824 (99.97 %) |
1,793,416 (10.43 %) |
1,374,078 (8.30 %) |
10,043,407 (46.03 %) |
89,437 (4.63 %) |
| 31 | California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022) GCA_022577455.1 |
n/a | 13,386 (1.04 %) |
21,767 (2.35 %) |
n/a | 40.56 (100.00 %) |
256 (0.00 %) |
140 (100.00 %) |
1,354,500 (9.93 %) |
998,712 (8.21 %) |
8,504,468 (46.70 %) |
78,768 (3.37 %) |
| 32 | California mussel (2022) GCF_021869535.1 |
69,448 (5.73 %) |
3,748 (0.18 %) |
14,386 (2.51 %) |
n/a | 32.57 (100.00 %) |
324 (0.00 %) |
175 (100.00 %) |
561,079 (1.48 %) |
717,508 (12.92 %) |
10,426,901 (47.53 %) |
1,981 (0.06 %) |
| 33 | California mussel (M0D057914Y alternate hap 2022) GCA_021869935.1 |
n/a | 4,619 (0.15 %) |
33,711 (2.56 %) |
n/a | 32.57 (100.00 %) |
140 (0.00 %) |
38,455 (100.00 %) |
779,750 (1.60 %) |
999,035 (14.00 %) |
13,721,847 (48.79 %) |
2,226 (0.11 %) |
| 34 | California quail (MVZ:Bird:193975 alternate hap 2022) GCA_023055725.1 |
n/a | 12,948 (1.71 %) |
24,838 (2.01 %) |
n/a | 43.36 (100.00 %) |
248 (0.00 %) |
1,601 (100.00 %) |
1,359,516 (35.69 %) |
599,039 (11.78 %) |
3,454,101 (36.94 %) |
36,496 (2.55 %) |
| 35 | California quail (MVZ:Bird:193975 primary hap 2022) GCA_023055505.1 |
n/a | 12,718 (2.12 %) |
23,363 (2.40 %) |
n/a | 42.23 (100.00 %) |
287 (0.00 %) |
608 (100.00 %) |
881,563 (19.85 %) |
308,707 (5.50 %) |
5,409,060 (25.34 %) |
25,268 (2.42 %) |
| 36 | California scrub oak (Qber.S.LA.60 alternate hap 2023) GCA_028535905.1 |
n/a | 16,153 (1.86 %) |
68,653 (14.03 %) |
n/a | 35.79 (100.00 %) |
43 (0.00 %) |
807 (100.00 %) |
783,798 (4.17 %) |
456,025 (10.87 %) |
4,951,918 (40.76 %) |
21,783 (2.16 %) |
| 37 | California scrub oak (Qber.S.LA.60 primary hap 2023) GCA_028535815.1 |
n/a | 15,836 (1.90 %) |
66,803 (13.99 %) |
n/a | 35.77 (100.00 %) |
32 (0.00 %) |
283 (100.00 %) |
762,029 (4.24 %) |
448,099 (10.97 %) |
4,784,968 (41.07 %) |
20,384 (2.28 %) |
| 38 | California sheephead (SPU_LCO1_2020_fin alternate hap 2022) GCA_022749735.1 |
n/a | 19,842 (2.16 %) |
72,007 (6.04 %) |
n/a | 41.70 (99.97 %) |
2,679 (0.02 %) |
15,877 (99.98 %) |
1,911,945 (24.70 %) |
364,933 (8.56 %) |
6,201,042 (32.00 %) |
39,114 (1.56 %) |
| 39 | California sheephead (SPU_LCO1_2020_fin primary hap 2022) GCA_022749685.1 |
n/a | 15,277 (2.46 %) |
46,371 (5.95 %) |
n/a | 41.58 (100.00 %) |
8 (0.00 %) |
179 (100.00 %) |
1,369,186 (24.73 %) |
232,889 (8.56 %) |
4,426,065 (31.90 %) |
27,134 (1.64 %) |
| 40 | California vole (kernensis MVZ Mamm 240107 primary hap 2023) GCA_028537955.1 |
n/a | 19,681 (1.86 %) |
21,257 (1.62 %) |
n/a | 42.24 (100.00 %) |
51 (0.00 %) |
350 (100.00 %) |
4,957,057 (42.33 %) |
943,226 (5.63 %) |
11,695,871 (33.83 %) |
20,062 (0.64 %) |
| 41 | California vole (kernensis MVZ Mamm 240107 alternate hap 2023) GCA_028537755.1 |
n/a | 19,409 (1.86 %) |
20,578 (1.69 %) |
n/a | 42.43 (100.00 %) |
43 (0.00 %) |
310 (100.00 %) |
3,161,054 (22.60 %) |
891,453 (5.62 %) |
11,087,206 (33.12 %) |
19,104 (0.65 %) |
| 42 | gopher snake (HBS135680 alternate hap 2023) GCA_029215685.1 |
n/a | 12,291 (1.06 %) |
19,125 (2.02 %) |
n/a | 40.55 (100.00 %) |
584 (0.00 %) |
1,233 (100.00 %) |
1,259,781 (7.92 %) |
925,571 (7.56 %) |
7,739,320 (45.92 %) |
73,681 (2.81 %) |
| 43 | gopher snake (HBS135680 primary hap 2023) GCA_029215655.1 |
n/a | 13,289 (1.09 %) |
20,513 (2.09 %) |
n/a | 40.35 (100.00 %) |
603 (0.00 %) |
1,029 (100.00 %) |
1,325,747 (8.26 %) |
973,338 (7.56 %) |
8,352,703 (45.38 %) |
72,941 (2.59 %) |
| 44 | interior live oak (QUWIS_CCGP_1 alternate hap 2022) GCA_023055485.1 |
n/a | 16,184 (2.02 %) |
66,215 (14.16 %) |
n/a | 35.37 (100.00 %) |
82 (0.00 %) |
689 (100.00 %) |
739,891 (4.58 %) |
435,389 (7.62 %) |
4,843,419 (38.03 %) |
13,298 (2.56 %) |
| 45 | interior live oak (QUWIS_CCGP_1 primary hap 2022) GCA_023055345.1 |
n/a | 15,832 (2.09 %) |
63,488 (14.36 %) |
n/a | 35.19 (100.00 %) |
81 (0.00 %) |
358 (100.00 %) |
703,028 (4.29 %) |
399,798 (6.48 %) |
4,662,881 (36.96 %) |
12,534 (1.92 %) |
| 46 | island oak (RSA801373 alternate hap 2023) GCA_028535165.1 |
n/a | 15,893 (1.97 %) |
68,998 (15.27 %) |
n/a | 35.87 (100.00 %) |
53 (0.00 %) |
156 (100.00 %) |
746,424 (4.43 %) |
451,117 (7.39 %) |
4,820,434 (38.55 %) |
20,367 (2.62 %) |
| 47 | island oak (RSA801373 primary hap 2023) GCA_028535515.1 |
n/a | 15,880 (1.95 %) |
69,093 (15.25 %) |
n/a | 35.97 (100.00 %) |
53 (0.00 %) |
274 (100.00 %) |
751,691 (4.60 %) |
457,914 (7.61 %) |
4,850,082 (38.95 %) |
20,561 (3.01 %) |
| 48 | little pocket mouse (longimembris alternate hap 2022) GCA_024363435.1 |
n/a | 19,150 (1.52 %) |
23,435 (1.64 %) |
n/a | 42.08 (100.00 %) |
229 (0.00 %) |
718 (100.00 %) |
n/a | 1,051,300 (12.43 %) |
9,858,628 (43.20 %) |
48,101 (2.62 %) |
| 49 | little pocket mouse (longimembris primary hap 2022) GCA_024363575.1 |
n/a | 19,760 (1.50 %) |
24,317 (1.63 %) |
n/a | 42.09 (100.00 %) |
215 (0.00 %) |
1,135 (100.00 %) |
3,913,744 (28.43 %) |
1,095,577 (12.70 %) |
10,273,833 (43.74 %) |
49,636 (2.61 %) |
| 50 | longjawed orb weaver (CCGP_RG_IND1 alternate hap 2022) GCA_024610695.1 |
n/a | 4,122 (0.31 %) |
22,945 (4.19 %) |
n/a | 33.56 (100.00 %) |
122 (0.00 %) |
539 (100.00 %) |
279,359 (1.39 %) |
338,628 (6.57 %) |
6,819,372 (52.63 %) |
33,186 (1.59 %) |
| 51 | longjawed orb weaver (CCGP_RG_IND1 primary hap 2022) GCA_024610705.1 |
n/a | 3,914 (0.31 %) |
23,705 (4.23 %) |
n/a | 33.54 (100.00 %) |
127 (0.00 %) |
301 (100.00 %) |
276,088 (1.30 %) |
326,785 (6.20 %) |
7,053,429 (52.56 %) |
34,376 (1.62 %) |
| 52 | Merriam's kangaroo rat (MVZ:Mamm:240054 alternate hap 2022) GCA_024711525.1 |
n/a | 18,555 (1.22 %) |
24,508 (1.35 %) |
n/a | 42.04 (100.00 %) |
181 (0.00 %) |
3,482 (100.00 %) |
6,419,007 (53.84 %) |
1,384,128 (15.63 %) |
11,486,822 (50.51 %) |
38,521 (1.60 %) |
| 53 | Merriam's kangaroo rat (MVZ:Mamm:240054 primary hap 2022) GCA_024711535.1 |
n/a | 21,281 (1.16 %) |
28,592 (1.34 %) |
n/a | 42.27 (100.00 %) |
182 (0.00 %) |
4,354 (100.00 %) |
4,378,955 (29.66 %) |
1,568,842 (17.75 %) |
12,889,786 (51.96 %) |
46,167 (1.71 %) |
| 54 | monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022) GCA_023349535.1 |
n/a | 15,176 (3.17 %) |
47,458 (7.48 %) |
n/a | 42.05 (99.99 %) |
927 (0.02 %) |
486 (100.00 %) |
1,167,409 (26.98 %) |
438,114 (8.08 %) |
3,351,987 (27.25 %) |
45,298 (3.39 %) |
| 55 | monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022) GCA_023349555.1 |
n/a | 14,480 (3.19 %) |
44,951 (7.47 %) |
n/a | 42.05 (99.98 %) |
936 (0.02 %) |
725 (100.00 %) |
1,101,582 (26.86 %) |
415,846 (8.16 %) |
3,162,480 (27.08 %) |
42,657 (3.44 %) |
| 56 | North American deer mouse (MVZ:Mamm:240117 alternate hap 2022) GCA_026167925.1 |
n/a | 19,342 (1.57 %) |
20,947 (1.48 %) |
n/a | 42.40 (100.00 %) |
229 (0.00 %) |
1,006 (100.00 %) |
4,161,568 (23.13 %) |
1,278,205 (8.22 %) |
13,148,019 (37.60 %) |
23,523 (0.71 %) |
| 57 | North American deer mouse (MVZ:Mamm:240117 primary hap 2022) GCA_026229955.1 |
n/a | 19,700 (1.54 %) |
22,354 (1.46 %) |
n/a | 42.19 (100.00 %) |
244 (0.00 %) |
2,082 (100.00 %) |
6,089,884 (47.99 %) |
1,358,786 (9.39 %) |
13,799,349 (39.08 %) |
24,733 (0.70 %) |
| 58 | northern elephant seal (CCGP_5_RB_7025 alternate hap 2023) GCA_029215635.1 |
n/a | 19,340 (1.59 %) |
19,732 (1.37 %) |
n/a | 41.91 (100.00 %) |
60 (0.00 %) |
482 (100.00 %) |
4,365,070 (34.26 %) |
627,639 (2.43 %) |
13,174,494 (35.47 %) |
74,314 (2.49 %) |
| 59 | northern elephant seal (CCGP_5_RB_7025 primary hap 2023) GCA_029215605.1 |
n/a | 19,278 (1.60 %) |
19,908 (1.39 %) |
n/a | 41.84 (100.00 %) |
98 (0.00 %) |
596 (100.00 %) |
4,348,333 (34.40 %) |
621,985 (2.21 %) |
13,251,768 (35.32 %) |
69,898 (2.38 %) |
| 60 | northern rubber boa (HBS 135849 alternate hap 2022) GCA_023362785.1 |
n/a | 12,816 (1.09 %) |
18,099 (1.83 %) |
n/a | 41.86 (100.00 %) |
84 (0.00 %) |
224 (100.00 %) |
1,081,107 (4.01 %) |
728,703 (4.64 %) |
6,961,724 (42.46 %) |
128,617 (3.90 %) |
| 61 | northern rubber boa (HBS 135849 primary hap 2022) GCA_023362775.1 |
n/a | 13,531 (1.08 %) |
18,971 (1.81 %) |
n/a | 41.83 (100.00 %) |
85 (0.00 %) |
289 (100.00 %) |
1,138,891 (3.99 %) |
798,941 (5.00 %) |
7,476,142 (42.85 %) |
135,874 (3.88 %) |
| 62 | Northwestern pond turtle (WTP2003 alternate hap 2022) GCA_022086895.1 |
n/a | 14,212 (1.00 %) |
20,203 (1.65 %) |
n/a | 44.72 (99.99 %) |
1,800 (0.01 %) |
2,508 (100.00 %) |
4,246,095 (48.91 %) |
442,393 (1.88 %) |
10,453,096 (35.71 %) |
134,572 (3.12 %) |
| 63 | Northwestern pond turtle (WTP2003 primary hap 2022) GCA_022086475.1 |
n/a | 14,862 (1.02 %) |
19,830 (1.62 %) |
n/a | 44.76 (100.00 %) |
148 (0.00 %) |
48 (100.00 %) |
4,413,681 (48.88 %) |
459,701 (1.92 %) |
11,014,102 (35.89 %) |
141,800 (3.08 %) |
| 64 | puma (L17-30 alternate hap 2023) GCA_028749965.1 |
n/a | 18,380 (1.53 %) |
20,701 (1.40 %) |
n/a | 41.91 (100.00 %) |
96 (0.00 %) |
304 (100.00 %) |
4,881,674 (33.96 %) |
978,817 (2.17 %) |
13,422,986 (35.08 %) |
69,437 (2.62 %) |
| 65 | puma (L17-30 primary hap 2023) GCA_028749985.1 |
n/a | 17,553 (1.53 %) |
19,299 (1.39 %) |
n/a | 41.89 (100.00 %) |
134 (0.00 %) |
390 (100.00 %) |
4,629,539 (33.53 %) |
919,008 (2.02 %) |
12,766,157 (34.70 %) |
65,437 (2.53 %) |
| 66 | red abalone (VD_foot alternate hap 2022) GCA_023055495.1 |
n/a | 4,327 (0.26 %) |
45,506 (6.24 %) |
n/a | 40.83 (100.00 %) |
132 (0.00 %) |
362 (100.00 %) |
448,911 (2.00 %) |
879,664 (20.84 %) |
6,092,284 (40.01 %) |
91,283 (2.95 %) |
| 67 | red abalone (VD_foot primary hap 2022) GCF_023055435.1 |
63,228 (7.41 %) |
4,344 (0.27 %) |
44,681 (6.50 %) |
70,020 (7.48 %) |
40.86 (100.00 %) |
154 (0.00 %) |
615 (100.00 %) |
439,431 (2.00 %) |
849,933 (20.72 %) |
6,526,155 (36.38 %) |
89,108 (2.99 %) |
| 68 | Ringneck snake (HBS135679 primary hap 2022) GCA_023053685.1 |
n/a | 13,357 (1.06 %) |
20,426 (1.94 %) |
n/a | 41.20 (100.00 %) |
723 (0.00 %) |
444 (100.00 %) |
1,451,537 (9.36 %) |
1,095,484 (10.35 %) |
7,870,309 (48.66 %) |
142,495 (4.04 %) |
| 69 | sage sparrow (canescens MVZ Bird 192114 alternate hap 2022) GCA_021966175.1 |
n/a | 16,893 (1.07 %) |
43,426 (1.70 %) |
n/a | 44.67 (100.00 %) |
12 (0.00 %) |
43,047 (100.00 %) |
1,180,596 (3.55 %) |
1,932,696 (16.57 %) |
6,340,063 (43.85 %) |
66,996 (3.45 %) |
| 70 | sage sparrow (canescens MVZ Bird 192114 primary hap 2022) GCA_021963965.1 |
n/a | 12,804 (1.50 %) |
25,425 (1.97 %) |
n/a | 43.46 (100.00 %) |
200 (0.00 %) |
1,339 (100.00 %) |
699,755 (3.36 %) |
1,030,540 (15.69 %) |
5,226,748 (36.13 %) |
36,539 (2.71 %) |
| 71 | San Diegan legless lizard (HBS135921 alternate hap 2023) GCA_029215795.1 |
n/a | 14,039 (1.09 %) |
19,528 (1.85 %) |
n/a | 43.71 (100.00 %) |
31 (0.00 %) |
122 (100.00 %) |
1,307,065 (5.31 %) |
672,219 (3.50 %) |
9,949,858 (39.30 %) |
83,890 (3.97 %) |
| 72 | San Diegan legless lizard (HBS135921 primary hap 2023) GCA_029215775.1 |
n/a | 14,065 (1.09 %) |
19,430 (1.84 %) |
n/a | 43.71 (100.00 %) |
21 (0.00 %) |
155 (100.00 %) |
1,307,771 (5.32 %) |
672,054 (3.42 %) |
9,846,806 (39.03 %) |
83,805 (3.99 %) |
| 73 | San Diegan tiger whiptail (HBS 135688 alternate hap 2022) GCA_023333555.1 |
n/a | 13,288 (1.15 %) |
18,137 (1.98 %) |
n/a | 43.29 (100.00 %) |
44 (0.00 %) |
227 (100.00 %) |
909,096 (6.37 %) |
544,302 (5.70 %) |
8,280,652 (39.20 %) |
51,923 (2.21 %) |
| 74 | San Diegan tiger whiptail (HBS 135688 primary hap 2022) GCA_023333525.1 |
n/a | 10,727 (1.18 %) |
14,669 (1.99 %) |
n/a | 43.32 (100.00 %) |
39 (0.00 %) |
113 (100.00 %) |
741,937 (6.29 %) |
448,194 (5.60 %) |
7,227,870 (36.97 %) |
42,621 (2.15 %) |
| 75 | San Diego alligator lizard (HBS135686 alternate hap 2022) GCA_023053675.1 |
n/a | 14,107 (1.14 %) |
19,600 (1.95 %) |
n/a | 43.58 (100.00 %) |
27 (0.00 %) |
627 (100.00 %) |
1,563,836 (7.79 %) |
758,521 (4.15 %) |
9,213,810 (40.44 %) |
81,126 (2.79 %) |
| 76 | San Diego alligator lizard (HBS135686 primary hap 2022) GCA_023053635.1 |
n/a | 14,075 (1.15 %) |
19,587 (1.99 %) |
n/a | 43.52 (100.00 %) |
23 (0.00 %) |
85 (100.00 %) |
1,577,744 (7.81 %) |
774,690 (3.78 %) |
9,248,062 (40.42 %) |
80,183 (2.48 %) |
| 77 | San Diego ringneck snake (HBS135679 alternate hap 2022) GCA_023053665.1 |
n/a | 10,911 (1.00 %) |
17,586 (1.79 %) |
n/a | 41.17 (100.00 %) |
572 (0.00 %) |
2,064 (100.00 %) |
1,265,045 (10.30 %) |
989,149 (13.38 %) |
6,503,035 (50.62 %) |
123,274 (4.17 %) |
| 78 | sandblossoms (Phelan CA IGA184 alternate hap 2022) GCA_023055565.1 |
n/a | 14,138 (0.74 %) |
125,370 (12.27 %) |
n/a | 40.18 (100.00 %) |
149 (0.00 %) |
581 (100.00 %) |
655,331 (1.73 %) |
500,899 (4.88 %) |
7,172,490 (54.24 %) |
140,800 (5.87 %) |
| 79 | sandblossoms (Phelan CA IGA184 primary hap 2022) GCA_023055425.1 |
n/a | 15,588 (0.93 %) |
117,831 (12.94 %) |
n/a | 40.08 (100.00 %) |
85 (0.00 %) |
123 (100.00 %) |
597,532 (1.81 %) |
430,194 (3.80 %) |
6,075,115 (49.91 %) |
129,512 (5.41 %) |
| 80 | Savannah sparrow (FMNH 499929 alternate hap 2022) GCA_022578375.1 |
n/a | 16,954 (1.37 %) |
46,692 (2.27 %) |
n/a | 43.66 (99.99 %) |
1,822 (0.01 %) |
31,565 (99.99 %) |
680,766 (3.36 %) |
930,904 (8.76 %) |
7,502,726 (27.96 %) |
56,390 (5.99 %) |
| 81 | Savannah sparrow (FMNH 499929 primary hap 2022) GCA_022577445.1 |
n/a | 12,665 (1.79 %) |
25,654 (2.40 %) |
n/a | 43.10 (100.00 %) |
339 (0.00 %) |
337 (100.00 %) |
428,675 (3.22 %) |
588,040 (7.38 %) |
6,466,447 (24.39 %) |
33,599 (4.75 %) |
| 82 | song sparrow (gouldii PMB2087b alternate hap 2022) GCA_022749775.1 |
n/a | 15,672 (1.16 %) |
40,690 (1.82 %) |
n/a | 45.19 (100.00 %) |
5 (0.00 %) |
34,693 (100.00 %) |
1,068,703 (34.46 %) |
796,004 (19.02 %) |
6,315,990 (40.22 %) |
57,647 (3.95 %) |
| 83 | song sparrow (gouldii PMB2087b primary hap 2022) GCA_022749695.1 |
n/a | 12,580 (1.53 %) |
24,737 (2.00 %) |
n/a | 44.45 (100.00 %) |
323 (0.00 %) |
501 (100.00 %) |
697,818 (28.44 %) |
510,301 (17.90 %) |
5,319,400 (34.64 %) |
36,632 (3.59 %) |
| 84 | Southern Pacific rattlesnake (HBS135844 alternate hap 2022) GCA_024509165.1 |
n/a | 13,381 (1.17 %) |
19,541 (1.96 %) |
n/a | 39.82 (100.00 %) |
34 (0.00 %) |
340 (100.00 %) |
1,137,408 (8.97 %) |
740,163 (7.59 %) |
7,520,676 (44.43 %) |
47,268 (1.61 %) |
| 85 | Southern Pacific rattlesnake (HBS135844 primary hap 2022) GCA_024509115.1 |
n/a | 12,626 (1.16 %) |
18,965 (1.95 %) |
n/a | 40.05 (99.99 %) |
443 (0.01 %) |
1,139 (99.99 %) |
1,095,605 (9.34 %) |
713,734 (8.45 %) |
6,942,208 (44.93 %) |
46,378 (2.04 %) |
| 86 | Southwestern pond turtle (HBS135687 alternate hap 2022) GCA_023634275.1 |
n/a | 14,998 (0.98 %) |
20,146 (1.60 %) |
n/a | 44.84 (100.00 %) |
64 (0.00 %) |
324 (100.00 %) |
1,562,785 (12.68 %) |
484,638 (2.00 %) |
11,089,433 (36.29 %) |
143,601 (3.21 %) |
| 87 | Southwestern pond turtle (HBS135687 primary hap 2022) GCA_023634205.1 |
n/a | 14,971 (0.99 %) |
19,756 (1.60 %) |
n/a | 44.77 (100.00 %) |
53 (0.00 %) |
106 (100.00 %) |
1,545,155 (12.63 %) |
465,697 (1.95 %) |
11,181,681 (36.13 %) |
142,383 (3.05 %) |
| 88 | starburst anemone (CCGP_MDBC_AS_20200803 alternate hap 2022) GCA_023349385.1 |
n/a | 3,493 (0.86 %) |
16,502 (12.72 %) |
n/a | 37.73 (100.00 %) |
110 (0.00 %) |
556 (100.00 %) |
165,912 (5.45 %) |
167,426 (15.62 %) |
1,713,723 (35.27 %) |
3,596 (2.48 %) |
| 89 | starburst anemone (CCGP_MDBC_AS_20200803 primary hap 2022) GCA_023349425.1 |
n/a | 3,234 (0.87 %) |
16,114 (12.90 %) |
n/a | 37.68 (100.00 %) |
98 (0.00 %) |
270 (100.00 %) |
156,950 (5.07 %) |
160,481 (15.24 %) |
1,630,122 (34.14 %) |
3,498 (2.09 %) |
| 90 | starfish (M0D059179O alternate hap 2022) GCA_023634265.1 |
n/a | 4,164 (0.70 %) |
22,980 (8.01 %) |
n/a | 39.54 (100.00 %) |
144 (0.00 %) |
270 (100.00 %) |
182,992 (1.90 %) |
191,085 (11.43 %) |
2,972,705 (35.44 %) |
17,396 (1.60 %) |
| 91 | starfish (M0D059179O primary hap 2022) GCA_023634235.1 |
n/a | 4,157 (0.65 %) |
24,415 (7.82 %) |
n/a | 39.69 (100.00 %) |
170 (0.00 %) |
683 (100.00 %) |
200,158 (1.93 %) |
207,470 (12.81 %) |
3,110,556 (37.19 %) |
20,323 (1.73 %) |
| 92 | Steller's jay (frontalis alternate hap 2022) GCA_026168045.1 |
n/a | 12,217 (1.73 %) |
25,261 (2.32 %) |
n/a | 44.10 (100.00 %) |
200 (0.00 %) |
957 (100.00 %) |
423,239 (3.30 %) |
362,061 (4.83 %) |
4,954,262 (27.09 %) |
42,188 (4.05 %) |
| 93 | Steller's jay (frontalis primary hap 2022) GCA_026167965.1 |
n/a | 12,789 (1.82 %) |
24,509 (2.35 %) |
n/a | 43.18 (100.00 %) |
223 (0.00 %) |
352 (100.00 %) |
413,598 (3.28 %) |
318,919 (3.99 %) |
5,977,564 (23.65 %) |
33,675 (3.21 %) |
| 94 | tidewater goby (DKJ021-1_F 2022) GCA_026437355.1 |
n/a | 13,912 (1.87 %) |
62,727 (6.28 %) |
n/a | 42.90 (99.99 %) |
894 (0.01 %) |
755 (100.00 %) |
1,981,480 (37.86 %) |
652,950 (27.50 %) |
3,680,829 (47.75 %) |
96,414 (8.01 %) |
| 95 | tidewater goby (DKJ021-1_F 2022) GCA_026437365.1 |
n/a | 14,276 (1.78 %) |
66,576 (6.32 %) |
n/a | 42.96 (99.99 %) |
794 (0.01 %) |
820 (100.00 %) |
2,127,818 (38.86 %) |
708,255 (30.28 %) |
3,809,452 (49.66 %) |
101,682 (8.04 %) |
| 96 | Townsend's big-eared bat (haplotype 1 of 2 COTO_CA2020_CCGP 2022) GCA_026230055.1 |
n/a | 19,370 (1.77 %) |
21,062 (1.61 %) |
n/a | 42.81 (100.00 %) |
219 (0.00 %) |
610 (100.00 %) |
2,923,694 (25.49 %) |
772,382 (3.25 %) |
10,654,074 (37.41 %) |
48,226 (2.42 %) |
| 97 | Townsend's big-eared bat (haplotype 2 of 2 COTO_CA2020_CCGP 2022) GCA_026230045.1 |
n/a | 18,627 (1.82 %) |
20,108 (1.67 %) |
n/a | 42.95 (100.00 %) |
217 (0.00 %) |
182 (100.00 %) |
2,733,927 (24.79 %) |
715,258 (3.17 %) |
10,099,456 (36.35 %) |
47,139 (2.58 %) |
| 98 | toyon (HeAr 88 alternate hap 2022) GCA_024363235.1 |
n/a | 22,795 (3.47 %) |
67,418 (16.40 %) |
n/a | 38.17 (100.00 %) |
11 (0.00 %) |
75 (100.00 %) |
347,375 (3.07 %) |
304,988 (3.96 %) |
3,119,641 (40.22 %) |
30,300 (3.29 %) |
| 99 | toyon (HeAr 88 primary hap 2022) GCA_024362995.1 |
n/a | 22,897 (3.50 %) |
67,595 (16.43 %) |
n/a | 38.12 (100.00 %) |
5 (0.00 %) |
118 (100.00 %) |
344,928 (2.90 %) |
299,566 (3.87 %) |
3,139,734 (39.86 %) |
30,533 (2.95 %) |
| 100 | tricolored blackbird (1412-34295 alternate hap 2022) GCA_023055385.1 |
n/a | 12,203 (1.76 %) |
25,216 (2.40 %) |
n/a | 43.65 (100.00 %) |
97 (0.00 %) |
450 (100.00 %) |
430,792 (3.25 %) |
542,908 (5.67 %) |
5,289,916 (24.99 %) |
36,805 (3.52 %) |
| 101 | tricolored blackbird (1412-34295 primary hap 2022) GCA_023055355.1 |
n/a | 12,867 (1.81 %) |
26,393 (2.48 %) |
n/a | 42.85 (100.00 %) |
97 (0.00 %) |
311 (100.00 %) |
429,011 (3.16 %) |
564,849 (5.52 %) |
6,336,716 (23.32 %) |
33,378 (2.70 %) |
| 102 | valley gartersnake (HBS 135685 alternate hap 2023) GCA_029207655.1 |
n/a | 13,267 (1.12 %) |
21,667 (2.38 %) |
n/a | 41.05 (100.00 %) |
403 (0.00 %) |
226 (100.00 %) |
1,344,601 (8.29 %) |
1,035,785 (7.00 %) |
8,436,473 (45.10 %) |
82,750 (2.69 %) |
| 103 | valley gartersnake (HBS 135685 primary hap 2023) GCA_029207665.1 |
n/a | 12,430 (1.10 %) |
20,286 (2.36 %) |
n/a | 41.12 (100.00 %) |
446 (0.00 %) |
413 (100.00 %) |
1,299,478 (9.62 %) |
1,018,398 (8.41 %) |
7,790,758 (46.28 %) |
81,352 (2.71 %) |
| 104 | Van Houtte's columbine (alt alternate hap PFEx6 2022) GCA_023053535.1 |
n/a | 13,357 (3.39 %) |
37,446 (17.24 %) |
n/a | 37.56 (100.00 %) |
63 (0.00 %) |
249 (100.00 %) |
244,573 (10.74 %) |
180,141 (13.98 %) |
1,184,686 (42.28 %) |
6,470 (2.86 %) |
| 105 | Van Houtte's columbine (PFEx6 primary hap 2022) GCA_023053565.1 |
n/a | 13,575 (3.44 %) |
38,113 (17.59 %) |
n/a | 37.58 (100.00 %) |
62 (0.00 %) |
463 (100.00 %) |
245,892 (11.25 %) |
158,855 (13.35 %) |
1,221,056 (41.58 %) |
6,436 (2.63 %) |
| 106 | vernal pool fairy shrimp B.lindahli (BRLI_1 2022) GCA_023053555.1 |
n/a | 3,102 (0.68 %) |
17,977 (7.76 %) |
n/a | 41.92 (99.99 %) |
241 (0.01 %) |
55 (100.00 %) |
119,585 (1.20 %) |
199,104 (7.20 %) |
1,836,958 (45.05 %) |
39,441 (4.47 %) |
| 107 | vernal pool fairy shrimp B.lynchi (BRLY_001 2022) GCA_023053575.1 |
n/a | 3,070 (0.45 %) |
18,582 (5.80 %) |
n/a | 41.38 (99.98 %) |
1,087 (0.02 %) |
217 (100.00 %) |
210,908 (1.67 %) |
227,493 (8.65 %) |
2,995,916 (52.42 %) |
41,064 (2.68 %) |
| 108 | vernal pool tadpole shrimp L.packardi (LEPA_1 2022) GCA_023053545.1 |
n/a | 3,989 (3.15 %) |
13,738 (21.55 %) |
n/a | 40.94 (99.99 %) |
89 (0.01 %) |
355 (100.00 %) |
26,912 (1.93 %) |
34,682 (12.48 %) |
374,516 (23.09 %) |
8,193 (6.10 %) |
| 109 | Virginia rail (171378401 alternate hap 2022) GCA_022605895.1 |
n/a | 12,732 (1.51 %) |
23,395 (1.91 %) |
n/a | 44.28 (99.99 %) |
668 (0.00 %) |
4,450 (100.00 %) |
526,500 (5.75 %) |
269,598 (14.29 %) |
4,825,913 (32.19 %) |
27,465 (2.18 %) |
| 110 | Virginia rail (171378401 primary hap 2022) GCA_022605955.1 |
n/a | 12,760 (1.53 %) |
23,262 (2.16 %) |
n/a | 44.16 (100.00 %) |
197 (0.00 %) |
1,299 (100.00 %) |
497,104 (5.09 %) |
271,530 (15.72 %) |
5,291,065 (32.37 %) |
24,669 (1.78 %) |
| 111 | western fence lizard (IW3139 2022) GCA_023333635.1 |
n/a | 26,067 (1.12 %) |
46,795 (2.72 %) |
n/a | 41.28 (100.00 %) |
51 (0.00 %) |
1,771 (100.00 %) |
2,075,491 (6.60 %) |
1,603,401 (7.34 %) |
15,565,775 (40.61 %) |
184,134 (3.16 %) |
| 112 | western fence lizard (IW3139 primary hap 2022) GCA_023333645.1 |
n/a | 24,835 (1.20 %) |
42,146 (2.78 %) |
n/a | 41.16 (100.00 %) |
51 (0.00 %) |
659 (100.00 %) |
1,842,497 (6.34 %) |
1,335,245 (6.14 %) |
15,103,683 (37.84 %) |
158,311 (2.92 %) |
| 113 | western red-tailed skink (HBS 135693 alternate hap 2022) GCA_026170595.1 |
n/a | 14,019 (1.31 %) |
17,620 (2.13 %) |
n/a | 45.76 (100.00 %) |
15 (0.00 %) |
39 (100.00 %) |
862,216 (4.87 %) |
557,627 (3.17 %) |
8,002,559 (36.95 %) |
183,292 (4.74 %) |
| 114 | western red-tailed skink (HBS 135693 primary hap 2022) GCA_026170395.1 |
n/a | 13,064 (1.32 %) |
16,407 (2.16 %) |
n/a | 45.81 (100.00 %) |
12 (0.00 %) |
50 (100.00 %) |
794,996 (4.86 %) |
514,021 (3.46 %) |
7,339,914 (37.02 %) |
168,847 (4.76 %) |
| 115 | western scrub-jay (CA MVZ Bird 193978 2023) GCA_028536645.1 |
n/a | 12,480 (1.72 %) |
22,915 (2.17 %) |
n/a | 44.29 (100.00 %) |
168 (0.00 %) |
1,631 (100.00 %) |
394,733 (2.99 %) |
364,498 (6.04 %) |
4,803,453 (27.52 %) |
42,022 (4.90 %) |
| 116 | western scrub-jay (CA MVZ Bird 193978 2023) GCA_028536675.1 |
n/a | 13,128 (1.62 %) |
25,648 (2.11 %) |
n/a | 44.58 (100.00 %) |
272 (0.00 %) |
1,393 (100.00 %) |
449,314 (3.08 %) |
505,129 (6.52 %) |
4,634,925 (31.99 %) |
51,884 (4.81 %) |
| 117 | western spadefoot toad (HBS 135690 2023) GCA_029215705.1 |
n/a | 13,914 (1.72 %) |
27,496 (4.28 %) |
n/a | 40.81 (100.00 %) |
198 (0.00 %) |
677 (100.00 %) |
600,622 (4.04 %) |
783,931 (10.70 %) |
5,362,245 (41.82 %) |
100,334 (5.41 %) |
| 118 | western spadefoot toad (HBS 135690 2023) GCA_029215755.1 |
n/a | 13,991 (1.72 %) |
27,685 (4.24 %) |
n/a | 40.90 (100.00 %) |
190 (0.00 %) |
541 (100.00 %) |
620,188 (5.00 %) |
800,411 (11.19 %) |
5,338,766 (42.25 %) |
101,603 (5.32 %) |
| 119 | woolly sculpin (CAN_PGR_092001 alternate hap 2022) GCA_023055415.1 |
n/a | 14,753 (3.49 %) |
49,516 (8.47 %) |
n/a | 43.00 (100.00 %) |
222 (0.00 %) |
171 (100.00 %) |
458,382 (5.18 %) |
420,718 (8.01 %) |
3,146,054 (25.71 %) |
69,817 (7.20 %) |
| 120 | woolly sculpin (CAN_PGR_092001 primary hap 2022) GCA_023055335.1 |
n/a | 14,847 (3.48 %) |
50,136 (8.43 %) |
n/a | 42.99 (100.00 %) |
219 (0.00 %) |
443 (100.00 %) |
461,903 (5.20 %) |
422,251 (8.03 %) |
3,180,804 (25.81 %) |
70,183 (7.15 %) |
| 121 | wrentit (frontalis MVZ Bird 193981 alternate hap 2023) GCA_029207785.1 |
n/a | 13,053 (1.78 %) |
24,963 (2.30 %) |
n/a | 43.93 (100.00 %) |
342 (0.00 %) |
1,350 (100.00 %) |
444,809 (3.08 %) |
473,154 (7.96 %) |
5,336,472 (25.82 %) |
37,198 (3.14 %) |
| 122 | wrentit (frontalis MVZ Bird 193981 primary hap 2023) GCA_029207755.1 |
n/a | 13,052 (1.78 %) |
24,950 (2.30 %) |
n/a | 43.93 (100.00 %) |
353 (0.00 %) |
1,695 (100.00 %) |
444,866 (3.08 %) |
473,471 (7.97 %) |
5,336,498 (25.82 %) |
37,210 (3.14 %) |
| 123 | yellow warbler (LACM:Birds122168 alternate hap 2022) GCA_024372515.1 |
n/a | 12,426 (1.63 %) |
27,565 (2.37 %) |
n/a | 43.59 (100.00 %) |
246 (0.00 %) |
776 (100.00 %) |
447,274 (3.06 %) |
612,008 (10.28 %) |
5,606,168 (28.79 %) |
39,449 (2.66 %) |
| 124 | yellow warbler (LACM:Birds122168 primary hap 2022) GCA_024362935.1 |
n/a | 12,556 (1.69 %) |
26,545 (2.35 %) |
n/a | 43.09 (100.00 %) |
284 (0.00 %) |
971 (100.00 %) |
440,673 (3.12 %) |
581,112 (9.17 %) |
6,158,372 (26.15 %) |
35,577 (2.57 %) |
| 125 | Yuma myotis (MYYU_CA2020_CCGP alternate hap 2023) GCA_028536395.1 |
n/a | 19,188 (1.79 %) |
21,673 (1.72 %) |
n/a | 43.03 (100.00 %) |
215 (0.00 %) |
250 (100.00 %) |
3,043,589 (24.76 %) |
773,853 (4.49 %) |
10,648,494 (37.26 %) |
61,910 (2.52 %) |
| 126 | Yuma myotis (MYYU_CA2020_CCGP primary hap 2023) GCA_028538775.1 |
n/a | 18,587 (1.82 %) |
21,049 (1.76 %) |
n/a | 43.22 (100.00 %) |
209 (0.00 %) |
685 (100.00 %) |
2,890,086 (24.28 %) |
719,555 (4.26 %) |
10,089,514 (36.35 %) |
60,975 (2.61 %) |
| TOTALS: | total assembly count 126 | |||||||||||
| Additional hubs with collections of assemblies | |||
|---|---|---|---|
| Collection | Hub index pages: | Assembly statistics: | Track statistics: |
| Primates | 200 assemblies | assembly stats | track stats |
| Mammals | 473 assemblies | assembly stats | track stats |
| Birds | 298 assemblies | assembly stats | track stats |
| Fishes | 335 assemblies | assembly stats | track stats |
| other vertebrates | 164 assemblies | assembly stats | track stats |
| Invertebrates | 625 assemblies | assembly stats | track stats |
| Plants | 247 assemblies | assembly stats | track stats |
| Fungi | 598 assemblies | assembly stats | track stats |
| Viruses | 264 assemblies | assembly stats | track stats |
| Bacteria | 73 assemblies | assembly stats | track stats |
| legacy/superseded | 370 assemblies | assembly stats | track stats |
| collections below are subsets of the assemblies above | |||
| VGP - Vertebrate Genome Project | 472 assemblies | assembly stats | track stats |
| CCGP - The California Conservation Genomics Project | 126 assemblies | assembly stats | track stats |
| HPRC - Human Pangenome Reference Consortium | 96 assemblies | assembly stats | track stats |