Fish Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 allis shad Alosa alosa GCF_017589495.1_AALO_Geno_1.1 1,095 854,464,681 1,541 767,536 38.87
2 Amazon molly Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 3,985 748,923,461 36,429 34,735,552 26.04
3 American shad (fAloSap1 alternate hap 2021) Alosa sapidissima GCA_018492705.1_fAloSap1.alt 5,410 852,425,339 1 20 38.65
4 American shad (fAloSap1 primary hap 2021) Alosa sapidissima GCF_018492685.1_fAloSap1.pri 74 903,581,644 1,639 4,995,812 39.49
5 annual killifish Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 29,784 866,963,076 1,025,519 172,836,531 28.75
6 Arctic char Salvelinus sp. IW2-2015 GCF_002910315.2_ASM291031v2 15,253 2,169,549,916 1,718,015 148,387,905 44.87
7 Aristotle's catfish (alternate hap 2022) Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype 7,617 713,076,206 0 0 40.74
8 Aristotle's catfish (primary hap 2022) Silurus aristotelis GCA_946808225.1_fSilAri3.1 241 800,118,513 795 159,000 42.15
9 Arkansas darter Etheostoma cragini GCF_013103735.1_CSU_Ecrag_1.0 4,664 643,078,674 35,052 3,314,141 26.64
10 arroyo chub (AC-1 alternate hap 2022) Gila orcuttii GCA_026230005.1_fGilOrc1.0.hap1 179 1,263,410,250 327 32,700 50.53
11 arroyo chub (AC-1 primary hap 2022) Gila orcuttii GCA_026230025.1_fGilOrc1.0.hap2 341 1,272,848,069 318 31,800 50.58
12 Asian bonytongue (2019) Scleropages formosus GCF_900964775.1_fSclFor1.1 72 784,563,014 145 41,360 26.53
13 Asian bonytongue (alternate hap) Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
14 Atlantic cod (2019) Gadus morhua GCF_902167405.1_gadMor3.0 227 669,966,409 1,216 23,573,743 33.47
15 Atlantic cod (alternate hap) Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
16 Atlantic halibut (2019 refseq) Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri 57 596,792,615 290 3,413,390 24.17
17 Atlantic halibut (alternate hap 2019) Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
18 Atlantic herring (v2) Clupea harengus GCF_900700415.2_Ch_v2.0.2 1,724 786,325,606 1,990 870,691 32.57
19 Atlantic horse mackerel (alternate hap 2021) Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype 1,049 797,027,743 74 4,927 32.73
20 Atlantic horse mackerel (primary hap 2021) Trachurus trachurus GCA_905171665.2_fTraTra1.2 153 801,243,942 222 29,162 32.85
21 Atlantic salmon (refseq 2021) Salmo salar GCF_905237065.1_Ssal_v3.1 4,011 2,756,584,103 211 21,100 59.39
22 Atlantic salmon (Sally 2015) Salmo salar GCF_000233375.1_ICSASG_v2 232,152 2,966,861,068 138,207 348,002,350 51.87
23 Atlantic turbot (AOZZmale01 2020) Scophthalmus maximus GCF_013347765.1_ASM1334776v1 127 556,696,898 51 2,160 25.82
24 ballan wrasse Labrus bergylta GCF_900080235.1_BallGen_V1 13,466 805,480,521 257 137,791 30.40
25 banded archerfish (fToxJac2 alternate hap 2021) Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt 2,393 594,660,453 2 26 26.52
26 banded archerfish (fToxJac2 primary hap 2021) Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri 96 621,503,431 98 1,137,472 28.10
27 barbel (alternate hap 2022) Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype 8,034 1,319,370,800 1 200 52.21
28 barbel (primary hap 2022) Barbus barbus GCA_936440315.1_fBarBab1.1 92 1,584,929,904 108 21,600 52.50
29 barramundi perch (ASB-BC8 2022) Lates calcarifer GCF_001640805.2_TLL_Latcal_v3 2,997 673,814,222 674 7,539,228 23.61
30 bicolor damselfish Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 5,817 800,485,922 44,409 50,762,588 23.44
31 black perch (LCO1_2020_lvr alternate hap 2022) Embiotoca jacksoni GCA_022578405.1_fEmbJac1.0.a 62,783 1,686,865,087 639 63,900 26.96
32 black perch (LCO1_2020_lvr primary hap 2022) Embiotoca jacksoni GCA_022577435.1_fEmbJac1.0.p 230 634,685,148 234 23,401 28.99
33 black rockcod Notothenia coriiceps GCF_000735185.1_NC01 38,657 636,613,682 59,164 13,288,261 29.51
34 blackbelly eelpout (fLycPai1 haplotype 1 2023) Lycodopsis pacificus GCA_028021495.1_fLycPai1.hap1 461 661,271,547 373 74,600 30.40
35 blackbelly eelpout (fLycPai1 haplotype 2 2023) Lycodopsis pacificus GCA_028022725.1_fLycPai1.hap2 109 646,369,862 366 73,200 29.94
36 blackstripe livebearer (line A6 2022) Poeciliopsis prolifica GCF_027474105.1_Auburn_PproV2 415 674,152,735 89 44,933 28.58
37 blue catfish (D&B 2022) Ictalurus furcatus GCF_023375685.1_Billie_1.0 43 825,475,682 171 16,147,546 44.46
38 blue tilapia (BGI-SZ) Oreochromis aureus GCF_005870065.1_ASM587006v1 12,952 918,953,803 53,539 93,301,056 23.12
39 blue tilapia (Guangdong) Oreochromis aureus GCF_013358895.1_ZZ_aureus 304 1,005,575,223 723 285,885 32.10
40 blunt-snouted clingfish (v2 2020 genbank) Gouania willdenowi GCA_900634775.2_fGouWil2.2 442 937,169,869 1,160 14,353,515 42.93
41 blunt-snouted clingfish (alternate hap) Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
42 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt 3,194 764,404,102 45 60,336 28.42
43 Boeseman's rainbowfish (fMelBoe1 primary hap 2021) Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri 93 865,592,457 440 3,217,901 29.18
44 bonti-bonti (fTelBon1 alternate hap 2022) Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype 4,619 781,234,592 0 0 38.85
45 bonti-bonti (fTelBon1 primary hap 2022) Telmatherina bonti GCA_933228915.1_fTelBon1.1 146 986,039,709 1,329 265,800 40.16
46 brook trout (EN_2023a 2023) Salvelinus fontinalis GCF_029448725.1_ASM2944872v1 2,721 2,496,185,110 4,299 4,308,856 57.12
47 brown-marbled grouper (2020) Epinephelus fuscoguttatus GCF_011397635.1_E.fuscoguttatus.final_Chr_v1 26 1,047,012,452 205 20,500 31.35
48 Burton's mouthbrooder (Broad 2011) Haplochromis burtoni GCF_000239415.1_AstBur1.0 7,994 831,398,301 61,073 132,461,904 20.26
49 Burton's mouthbrooder (NCSU 2021) Haplochromis burtoni GCF_018398535.1_NCSU_Asbu1 7,421 854,588,855 32,418 93,726,465 23.62
50 butterfish (fScaArg1 alternate hap 2021) Scatophagus argus GCA_020382915.1_fScaArg1.alt 1,592 563,244,951 4 52 21.38
51 butterfish (fScaArg1 primary hap 2021) Scatophagus argus GCF_020382885.2_fScaArg1.pri 48 570,802,272 77 1,711,559 21.27
52 California sheephead (SPU_LCO1_2020_fin alternate hap 2022) Semicossyphus pulcher GCA_022749735.1_fSemPul1.0.a 13,198 1,095,728,264 2,679 267,900 32.04
53 California sheephead (SPU_LCO1_2020_fin primary hap 2022) Semicossyphus pulcher GCA_022749685.1_fSemPul1.0.p 179 794,122,974 8 807 31.94
54 channel catfish (USDA103 v2.0 2022) Ictalurus punctatus GCF_001660625.3_Coco_2.0 137 842,942,949 100 5,510,128 46.73
55 channel bull blenny (2019 refseq) Cottoperca gobio GCF_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
56 channel bull blenny (alternate hap 2019) Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
57 chichlid (S. diagramma) Simochromis diagramma GCF_900408965.1_fSimDia1.1 823 848,827,444 942 39,011 29.00
58 Chinese large-mouth catfish (SWU-2019-XX 2020) Silurus meridionalis GCF_014805685.1_ASM1480568v1 286 742,596,447 597 1,345,608 37.56
59 Chinese sucker (Aquarium Trade MX2 2022) Myxocyprinus asiaticus GCF_019703515.2_UBuf_Myxa_2 353 2,340,864,798 224 112,000 59.93
60 Chinook salmon (v2 Ot180627B 2021 male rfseq) Oncorhynchus tshawytscha GCF_018296145.1_Otsh_v2.0 7,665 2,294,859,190 2,334 231,729 54.65
61 Chinook salmon (v1 2018 female) Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 14,028 2,425,709,133 272,151 66,933,393 47.70
62 chub mackerel (fScoJap1 alternate hap 2022) Scomber japonicus GCA_027409835.1_fScoJap1.alt 2,162 783,090,595 1 39 30.75
63 chub mackerel (fScoJap1 primary hap 2022) Scomber japonicus GCF_027409825.1_fScoJap1.pri 360 828,681,152 1,572 647,100 32.44
64 chum salmon (Oke142-1_Chum_Gynogen 2020) Oncorhynchus keta GCF_012931545.1_Oket_V1 25,265 1,853,104,330 242,238 86,386,492 46.35
65 chum salmon (PuntledgeMale-10-30-2019 2022) Oncorhynchus keta GCF_023373465.1_Oket_V2 14,075 2,556,477,726 3,433 341,979 55.78
66 climbing perch (v1.3 2021) Anabas testudineus GCA_900324465.3_fAnaTes1.3 51 555,658,509 266 3,606,496 21.33
67 climbing perch (alternate hap 2019) Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
68 clown anemonefish (DU_AmpOce 2017) Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 6,405 880,720,895 1,406 545,178 32.00
69 clown anemonefish (Okinawa individual 3 2022) Amphiprion ocellaris GCF_022539595.1_ASM2253959v1 354 863,484,803 1,454 136,641 35.40
70 coho salmon (150728-3 2019) Oncorhynchus kisutch GCF_002021735.2_Okis_V2 4,087 2,375,911,593 5,631 469,357 54.83
71 common carp SPL01 (2021) Cyprinus carpio GCF_018340385.1_ASM1834038v1 6,701 1,680,134,903 26,351 7,988,566 38.58
72 convict blenny (fPhoLeu1 alternate hap 2021) Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt 21,417 1,865,716,438 144 143,564 67.06
73 convict blenny (fPhoLeu1 primary hap 2021) Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri 512 6,032,307,556 2,580 52,780,824 99.13
74 copperband butterflyfish (fCheRos1 alternate hap 2021) Chelmon rostratus GCA_017976315.1_fCheRos1.alt 2,125 601,666,562 1 500 32.92
75 copperband butterflyfish (fCheRos1 primary hap 2021) Chelmon rostratus GCF_017976325.1_fCheRos1.pri 29 644,208,431 60 11,380 21.59
76 cunner (fTauAds1 alternate hap 2021) Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur 1,476 695,716,069 31 74,261 30.23
77 cunner (fRauAds1 primary hap 2021) Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur 64 723,582,185 283 4,256,220 30.38
78 Danionella translucida (Bolton 2019) Danionella translucida GCA_007224835.1_ASM722483v1 27,639 735,303,417 8,366 9,600,144 35.07
79 Danionella translucida (fDanTra1 2020) Danionella translucida GCA_903798025.1_fDanTra1.1 11,344 657,340,729 18,487 38,677,057 28.85
80 dark-edged splitfin Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 72 1,150,004,004 409 6,172,100 38.37
81 delta smelt Hypomesus transpacificus GCF_021917145.1_fHypTra1 376 437,273,953 1,474 354,099 32.53
82 denticle herring (v2 2020) Denticeps clupeoides GCA_900700375.2_fDenClu1.2 461 567,417,970 464 4,648,387 28.83
83 denticle herring (alternate hap 2019) Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
84 dwarf seahorse (Florida 2022) Hippocampus zosterae GCF_025434085.1_ASM2543408v3 213 544,521,268 79 1,580 41.86
85 eastern happy (v3 2021) Astatotilapia calliptera GCA_900246225.5_fAstCal1.3 249 880,445,568 490 1,186,663 35.92
86 electric eel (fEleEle1 alternate hap 2020) Electrophorus electricus GCA_013347915.1_fEleEle1.alt 2,629 428,136,346 0 0 24.43
87 electric eel (fEleEle1 primary hap 2020) Electrophorus electricus GCF_013358815.1_fEleEle1.pri 89 589,358,956 227 10,599,768 24.89
88 electric eel (MRS-EE1 2018 U Wisconsin) Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE 8,786 551,880,868 119,361 17,042,720 21.59
89 elephant fish B.brachyistius (T26 2022) Brienomyrus brachyistius GCF_023856365.1_BBRACH_0.4 1,425 988,088,817 234 112,552 35.02
90 emerald rockcod Trematomus bernacchii GCF_902827165.1_fTreBer1.1 864 867,125,071 932 117,692 40.13
91 European perch Perca fluviatilis GCF_010015445.1_GENO_Pfluv_1.0 303 951,345,774 801 292,795 37.11
92 European plaice (alternate hap 2022) Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype 3,219 613,421,917 3 600 28.01
93 European plaice (primary hap 2022) Pleuronectes platessa GCF_947347685.1_fPlePla1.1 355 687,388,084 1,072 214,400 33.59
94 European seabass (2021) Dicentrarchus labrax GCF_905237075.1_dlabrax2021 303 695,910,406 272 1,022,065 26.22
95 fathead minnow Pimephales promelas GCF_016745375.1_EPA_FHM_2.0 911 1,066,429,022 5,594 141,038,611 35.72
96 flathead mullet Mugil cephalus GCF_022458985.1_CIBA_Mcephalus_1.1 24 634,849,760 445 222,500 24.79
97 flier cichlid (MPI-CPG 2019 refseq) Archocentrus centrarchus GCF_007364275.1_fArcCen1 188 932,930,362 744 16,903,477 30.69
98 flier cichlid (alternate hap MPI-CPG 2019) Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
99 freshwater garfish (fXenCan1 alternate hap 2020) Xenentodon cancila GCA_014839645.1_fXenCan1.alt 5,169 658,557,970 2 1,000 26.36
100 freshwater garfish (fXenCan1 primary hap 2020) Xenentodon cancila GCA_014839995.1_fXenCan1.pri 410 736,214,936 1,373 7,503,584 27.54
101 giant grouper Epinephelus lanceolatus GCF_005281545.1_ASM528154v1 4,201 1,087,415,941 23,415 39,254,828 30.31
102 gilthead seabream (v2 2021) Sparus aurata GCA_900880675.2_fSpaAur1.2 176 833,595,063 1,050 342,268 29.60
103 gilthead seabream (alternate hap 2019) Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
104 golden-line barbel Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 31,277 1,750,287,761 136,894 182,848,609 37.17
105 goldfish Carassius auratus GCF_003368295.1_ASM336829v1 6,216 1,820,635,050 2,247 224,700 40.21
106 grass carp (HZGC_01 2021) Ctenopharyngodon idella GCF_019924925.1_HZGC01 31 893,215,104 150 150,000 40.24
107 great blue-spotted mudskipper (Guang Dong 2022) Boleophthalmus pectinirostris GCF_026225935.1_ASM2622593v1 600 941,505,238 3,407 3,486,618 54.69
108 great blue-spotted mudskipper (pooled male+femail 2014 BGI) Boleophthalmus pectinirostris GCF_000788275.1_BP.fa 16,620 955,752,150 92,327 65,847,082 42.56
109 greater amberjack Seriola dumerili GCF_002260705.1_Sdu_1.0 34,656 677,686,174 9,742 5,561,840 24.75
110 greater pipefish (v1.2 2020) Syngnathus acus GCF_901709675.1_fSynAcu1.2 87 324,331,233 43 13,700 25.95
111 greater pipefish (alternate hap 2019) Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
112 green swordtail Xiphophorus hellerii GCF_003331165.1_Xiphophorus_hellerii-4.1 87 732,906,125 661 2,127,807 28.89
113 Gulf pipefish (RoL_Ssco_1.1 Florida 2022 refseq) Syngnathus scovelli GCF_024217435.1_RoL_Ssco_1.1 496 428,432,749 11 220 43.65
114 Gulf pipefish (RoL_Ssco_1.2 Florida 2022 genbank) Syngnathus scovelli GCA_024217435.4_RoL_Ssco_1.2 496 428,417,373 11 220 43.65
115 guppy Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT 2,767 731,621,225 458,354 67,451,939 25.67
116 honeycomb rockfish (fSebUmb1 alternate hap 2020) Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt 2,131 765,970,641 21 855 37.65
117 honeycomb rockfish (fSebUmb1 primary hap 2020) Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri 138 800,904,020 215 1,393,892 36.28
118 horned golden-line barbel Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 164,172 1,655,785,943 150,790 134,307,852 35.97
119 humphead wrasse Cheilinus undulatus GCF_018320785.1_ASM1832078v1 46 1,173,472,134 284 28,400 33.01
120 Indian medaka Oryzias melastigma GCF_002922805.2_ASM292280v2 8,493 778,703,520 51,550 40,471,418 33.35
121 Indian glassy fish (v2 2020) Parambassis ranga GCA_900634625.2_fParRan2.2 157 551,029,983 1,523 10,561,548 25.10
122 Indian glassy fish (alternate hap 2019) Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
123 Indo-Pacific tarpon (2020) Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri 207 959,258,046 63 283,098 22.11
124 Japanese flounder Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 9,525 643,911,827 40,314 122,165,179 17.39
125 Japanese medaka Oryzias latipes GCF_002234675.1_ASM223467v1 25 734,057,086 491 491,000 34.95
126 jewelled blenny (2019) Salarias fasciatus GCF_902148845.1_fSalaFa1.1 203 797,507,141 602 10,447,897 26.61
127 jewelled blenny (alternate hap 2019) Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
128 kelp grouper (mb 2019) Epinephelus moara GCF_006386435.1_YSFRI_EMoa_1.0 4,563 1,030,477,684 48,394 30,797,138 29.13
129 lake trout Salvelinus namaycush GCF_016432855.1_SaNama_1.0 4,121 2,345,513,378 3,264 326,400 54.51
130 lake whitefish (EN20210322 male 2021 Laval U) Coregonus clupeaformis GCF_018398675.1_ASM1839867v1 6,355 2,682,612,311 1,716 74,680 61.22
131 lake whitefish (EN_2021a female 2021 Laval U) Coregonus clupeaformis GCF_020615455.1_ASM2061545v1 7,334 2,753,287,365 1,159 120,877 61.18
132 large yellow croaker Larimichthys crocea GCF_000972845.2_L_crocea_2.0 9,998 657,939,657 7,424 2,166,101 24.87
133 largemouth bass Micropterus salmoides GCF_014851395.1_ASM1485139v1 4,753 963,613,914 2,909 1,454,500 29.63
134 largescale foureyes (fAnaAna1 alternate hap 2020) Anableps anableps GCA_014839705.1_fAnaAna1.alt 5,088 445,542,990 0 0 27.42
135 largescale foureyes (fAnaAna1 primary hap 2020) Anableps anableps GCA_014839685.1_fAnaAna1.pri 33 867,632,993 107 306,559 29.88
136 leopard coralgrouper Plectropomus leopardus GCF_008729295.1_YSFRI_Pleo_2.0 94,260 895,705,288 3,611 15,810,414 29.38
137 lesser salmon catfish (fNeoGra1 alternate hap 2023) Neoarius graeffei GCA_027579805.1_fNeoGra1.alt 6,590 2,195,086,485 3 67 62.71
138 lesser salmon catfish (fNeoGra1 primary hap 2023) Neoarius graeffei GCA_027579695.1_fNeoGra1.pri 38 2,341,916,362 334 13,260,140 62.77
139 live sharksucker (v2 2021) Echeneis naucrates GCA_900963305.2_fEcheNa1.2 38 544,229,243 140 599,356 21.82
140 live sharksucker (alternate hap 2019) Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
141 longspined bullhead (fTauBub2.1 alternate hap 2021) Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype 1,778 614,755,631 0 0 28.10
142 longspined bullhead (fTauBub2.1 primary hap 2021) Taurulus bubalis GCA_910589615.1_fTauBub2.1 27 615,153,901 242 77,100 28.62
143 lumpfish (2019 refseq) Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri 48 572,885,595 347 10,182,204 28.09
144 lumpfish (alternate hap 2019) Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
145 lyretail cichlid Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 9,083 847,883,811 109,100 161,986,532 19.51
146 mandarin fish (FFG_IHB_CAS 2021) Siniperca chuatsi GCF_020085105.1_ASM2008510v1 65 718,820,513 93 9,300 27.44
147 mandarin fish (RoL2022-P1 2023) Synchiropus splendidus GCF_027744825.2_RoL_Sspl_1.0 97 582,898,256 19 361 32.12
148 mangrove rivulus Kryptolebias marmoratus GCF_001649575.2_ASM164957v2 300 680,655,669 32,278 38,822,415 27.34
149 Mexican tetra (2017 WashU) Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 2,415 1,335,239,194 621 43,642,769 42.58
150 Mexican tetra (Pach_M1 Pachon cave 2021) Astyanax mexicanus GCA_019721115.1_AMEX_1.1 195 1,378,811,567 334 165,606 47.76
151 Mexican tetra (ESR-SI-001 2022) Astyanax mexicanus GCF_023375975.1_AstMex3_surface 109 1,373,169,186 14 7,000 47.33
152 milkfish (2019) Chanos chanos GCF_902362185.1_fChaCha1.1 31 656,929,047 112 4,230,332 26.35
153 milkfish (alternate hap 2019) Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
154 monkeyface prickleback (CVI_PGR_0920_01 alternate hap 2022) Cebidichthys violaceus GCA_023349535.1_fCebVio1.0.a 486 606,177,218 927 92,700 27.32
155 monkeyface prickleback (CVI_PGR_0920_01 primary hap 2022) Cebidichthys violaceus GCA_023349555.1_fCebVio1.0.p 725 575,660,146 936 93,600 27.15
156 Monterrey platyfish Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 68 688,541,509 229 1,031,462 28.28
157 mudskipper P.magnuspinnatus (v1.2 primary hap 2023) Periophthalmus magnuspinnatus GCF_009829125.3_fPerMag1.2.pri 122 752,605,561 701 7,178,761 43.07
158 mudskipper P.magnuspinnatus (v1 alternate hap 2020 genbank) Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
159 mummichog (Maine) Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 10,180 1,021,898,560 123,625 89,424,232 26.05
160 mummichog (U. Missouri) Fundulus heteroclitus GCF_011125445.2_MU-UCD_Fhet_4.1 1,031 1,203,505,739 2,820 1,407,874 33.01
161 New Zealand spotty (2019) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
162 New Zealand spotty (alternate hap 2019) Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
163 Nile tilapia Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU 2,460 1,005,681,550 551 55,001 31.17
164 ninespine stickleback Pungitius pungitius GCF_902500615.1_NSP_V7 1,667 466,599,196 341 34,100 25.74
165 North African catfish (Netherlands MV-2021 2022) Clarias gariepinus GCF_024256425.1_CGAR_prim_01v2 48 969,620,777 0 0 44.81
166 northern pike Esox lucius GCF_004634155.1_Eluc_v4 811 940,906,975 584 58,400 33.32
167 northern pike (alternate hap 2020) Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
168 northern pike (2020 refseq) Esox lucius GCF_011004845.1_fEsoLuc1.pri 53 918,748,614 112 1,022,735 32.97
169 Old Calabar mormyrid Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 4,666 799,417,351 49,579 63,880,082 20.88
170 orangethroat darter Etheostoma spectabile GCF_008692095.1_UIUC_Espe_1.0 3,119 854,806,606 101,221 4,031,177 31.23
171 orbiculate cardinalfish (2019) Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 340 1,342,662,642 1,844 3,566,081 48.65
172 orbiculate cardinalfish (alternate hap 2019) Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
173 oriental weatherfish (BS_2022a 2023) Misgurnus anguillicaudatus GCF_027580225.1_HAU_Mang_1.0 358 1,104,586,043 614 61,301 45.73
174 P.nyererei 1_Seehausen Pundamilia nyererei GCF_000239375.1_PunNye1.0 7,233 830,129,318 60,817 131,372,167 20.67
175 Pacific halibut (PH-IPHC-18 2020) Hippoglossus stenolepis GCF_013339905.1_IPHC_HiSten_1.0 120 594,145,200 219 21,900 25.27
176 Pacific halibut (QCI-W04-F060 2022) Hippoglossus stenolepis GCF_022539355.2_HSTE1.2 53 602,165,188 1,131 325,822 24.80
177 pejerrey (fOdoBon6 haplotype 1 2023) Odontesthes bonariensis GCA_027942865.1_fOdoBon6.hap1 189 945,823,896 282 91,800 35.17
178 pejerrey (fOdoBon6 haplotype 2 2023) Odontesthes bonariensis GCA_027942885.1_fOdoBon6.hap2 334 974,945,057 135 67,500 36.86
179 peladilla (fAplTae1 alternate hap 2021) Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt 5,690 560,414,924 11 839 28.85
180 peladilla (fAplTae1 primary hap 2021) Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri 41 461,946,147 1,158 8,155,958 27.72
181 pike-perch Sander lucioperca GCF_008315115.2_SLUC_FBN_1.2 337 901,238,333 711 194,059 36.52
182 pinecone soldierfish (2019) Myripristis murdjan GCF_902150065.1_fMyrMur1.1 87 835,254,674 253 1,865,832 28.16
183 pinecone soldierfish (alternate hap 2019) Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
184 pink salmon Oncorhynchus gorbuscha GCF_021184085.1_OgorEven_v1.0 19,028 2,690,283,663 5,213 1,188,012 57.36
185 ploughfish Gymnodraco acuticeps GCF_902827175.1_fGymAcu1.1 2,618 996,888,495 1,569 192,604 45.12
186 prehistoric monster fish (2019 refseq) Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
187 prehistoric monster fish (alternate hap 2019) Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
188 rainbow trout (Swanson) Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 131,961 2,178,999,613 427,894 251,515,894 44.07
189 rainbow trout (Arlee) Oncorhynchus mykiss GCF_013265735.2_USDA_OmykA_1.1 743 2,341,688,614 486 6,184,519 53.80
190 razorback sucker (HMW12.3.18 2022) Xyrauchen texanus GCF_025860055.1_RBS_HiC_50CHRs 1,746 2,186,823,573 1,873 936,500 51.92
191 red drum (XU1910 2020) Sciaenops ocellatus GCA_014183145.1_ASM1418314v1 34,462 684,633,790 11,577 30,266,824 23.28
192 red-bellied piranha (fPygNat1 alternate hap 2020) Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt 1,751 289,313,524 0 0 49.72
193 red-bellied piranha (fPygNat1 primary hap 2020) Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri 55 1,222,050,449 303 10,159,184 35.79
194 red-bellied piranha (Pna-1 2016) Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 283,518 1,285,352,492 62,964 33,286,579 34.80
195 reedfish (2021) Erpetoichthys calabaricus GCF_900747795.2_fErpCal1.3 169 3,613,551,144 1,431 29,707,657 47.53
196 reedfish (alternate hap) Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
197 ringed pipefish (RoL2022-P2 2023) Dunckerocampus dactyliophorus GCF_027744805.1_RoL_Ddac_1.1 157 670,648,883 14 280 41.09
198 Rio pearlfish (Nwh7 v2 2021) Nematolebias whitei GCF_014905685.2_NemWhi1 18,998 1,218,316,901 100,521 97,663,390 42.85
199 river trout (v2 2021) Salmo trutta GCA_901001165.2_fSalTru1.2 1,441 2,371,880,186 3,941 73,600,705 55.89
200 rock gunnel (alternate hap 2021) Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype 2,165 590,303,236 1 500 25.85
201 rock gunnel (primary hap 2021) Pholis gunnellus GCA_910591455.2_fPhoGun1.2 101 588,696,950 418 137,000 25.63
202 rohu (BAU-BD-2019 2022) Labeo rohita GCF_022985175.1_IGBB_LRoh.1.0 2,870 1,126,558,565 5,144 181,047,225 41.98
203 sailfin molly Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 17,986 815,142,410 41,735 135,369,525 22.54
204 Senegalese sole Solea senegalensis GCF_019176455.1_IFAPA_SoseM_1 1,937 603,535,267 662 65,441 28.32
205 sheepshead minnow Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 9,259 1,035,184,475 113,210 135,655,219 27.50
206 shortfin molly Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 18,102 801,710,366 37,507 121,884,386 22.83
207 Siamese fighting fish (v4 primary hap 2023) Betta splendens GCF_900634795.4_fBetSpl5.4 36 427,001,245 321 31,466 23.21
208 Siamese fighting fish (alternate hap 2019) Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
209 silver crucian carp (wild population from Czech Republic Cgi1373 2022) Carassius gibelio GCF_023724105.1_carGib1.2-hapl.c 51 1,583,351,535 2,597 1,296,088 45.06
210 smallmouth bass Micropterus dolomieu GCF_021292245.1_ASM2129224v1 15,020 829,587,215 34,581 3,005,762 28.32
211 sockeye salmon (On170113-E2 v2 2019) Oncorhynchus nerka GCF_006149115.2_Oner_1.1 34,757 1,925,212,521 25,658 74,077,259 48.61
212 South Georgia icefish Pseudochaenichthys georgianus GCF_902827115.1_fPseGeo1.1 1,563 1,026,101,545 2,461 639,506 45.87
213 southern platyfish Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male 102 704,321,165 156 3,327,905 28.29
214 southern bluefin tuna (alternate hap 2021) Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype 895 782,574,410 0 0 33.63
215 southern bluefin tuna (primary hap 2021) Thunnus maccoyii GCF_910596095.1_fThuMac1.1 58 782,423,979 184 31,592 26.89
216 Southwestern China cavefish Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 85,682 1,632,718,266 168,741 119,821,887 36.99
217 spiny chromis (Palm Islands 2017) Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 30,414 991,584,656 209,115 148,830,929 22.65
218 spiny chromis (Palm Island Apoly-LR-REF 2022) Acanthochromis polyacanthus GCF_021347895.1_KAUST_Apoly_ChrSc 81 956,771,783 871 74,752 35.47
219 sablefish (Golden Eagle Sablefish UVic2021 2023) Anoplopoma fimbria GCF_027596085.1_Afim_UVic_2022 7,493 653,543,715 723 71,904 28.31
220 sterlet (maternal 2020) Acipenser ruthenus GCA_902713425.1_fAciRut3.1_maternal_haplotype 245 1,638,742,712 402 87,383 39.24
221 sterlet (paternal 2020) Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype 224 1,663,879,616 422 83,585 39.19
222 stone loach (alternate hap 2022) Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype 2,237 571,749,702 0 0 38.06
223 stone loach (primary hap 2022) Barbatula barbatula GCA_947034865.1_fBarBar1.1 100 617,663,352 825 165,000 39.89
224 striped catfish (fPanHyp1 alternate hap 2022) Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt 3,274 738,869,872 1 45 37.85
225 striped catfish (fPanHyp1 primary hap 2022) Pangasianodon hypophthalmus GCF_027358585.1_fPanHyp1.pri 58 764,974,446 236 3,879,978 37.93
226 striped catfish Vietnam Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius 567 715,760,110 23,755 19,239,465 30.11
227 striped sea-bass Morone saxatilis GCF_004916995.1_NCSU_SB_2.0 630 598,127,127 73,335 5,158,999 22.76
228 striped catfish Indonesia Pangasianodon hypophthalmus GCF_009078355.1_GENO_Phyp_1.0 150 758,973,678 463 175,919 32.50
229 Sumatra barb Puntigrus tetrazona GCF_018831695.1_ASM1883169v1 1,122 730,818,536 5,075 394,129 32.49
230 swamp eel Monopterus albus GCF_001952655.1_M_albus_1.0 20,622 684,144,148 51,257 54,828,134 21.96
231 swordfish Xiphias gladius GCF_016859285.1_ASM1685928v1 1,482 691,780,295 449 224,500 23.97
232 tambaqui Colossoma macropomum GCF_904425465.1_Colossoma_macropomum 1,269 1,221,847,006 420 37,940 35.37
233 three-spined stickleback Gasterosteus aculeatus aculeatus GCF_016920845.1_GAculeatus_UGA_version5 2,937 471,894,361 3,125 3,574,186 21.96
234 tidewater goby (DKJ021-1_F 2022) Eucyclogobius newberryi GCA_026437355.1_fEucNew1.0.hap2 755 913,837,424 894 89,400 47.96
235 tidewater goby (DKJ021-1_F 2022) Eucyclogobius newberryi GCA_026437365.1_fEucNew1.0.hap1 820 984,795,555 794 79,400 49.87
236 tiger tail seahorse (QL1 v2 2016) Hippocampus comes GCF_001891065.2_H_comes_QL1_v1.1 32,914 492,131,402 22,977 34,075,199 24.57
237 tongue sole Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 29,643 470,199,494 33,269 24,157,720 24.84
238 torafugu (fTakRub1.2 2019 refseq) Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
239 torafugu (fTakRub1.3 2021 genbank) Takifugu rubripes GCA_901000725.3_fTakRub1.3 128 384,126,663 402 3,688,529 20.93
240 torafugu (alternate hap 2019) Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
241 turbot (ysfricsl-2021 2022) Scophthalmus maximus GCF_022379125.1_ASM2237912v1 28 538,234,718 0 0 24.37
242 turquoise killifish (GRZ 2015) Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 5,897 1,242,518,059 85,562 385,709,548 27.64
243 turquoise killifish (MZM-0403 2023) Nothobranchius furzeri GCF_027789165.1_UI_Nfuz_MZM_1.0 2,681 1,513,041,927 3,093 102,568,068 56.57
244 warty frogfish (fAntMac1 alternate hap 2020) Antennarius maculatus GCA_013347815.1_fAntMac1.alt 2,294 530,348,589 0 0 29.49
245 warty frogfish (fAntMac1 primary hap 2020) Antennarius maculatus GCA_013358685.1_fAntMac1.pri 155 549,949,511 219 733,384 29.79
246 western mosquitofish Gambusia affinis GCF_019740435.1_SWU_Gaff_1.0 37 680,166,006 181 17,569,858 26.88
247 White Sands pupfish Cyprinodon tularosa GCF_016077235.1_ASM1607723v1 2,003 1,086,882,241 0 0 38.10
248 wolf-eel Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 10,315 611,444,226 23,891 43,723,504 22.11
249 woolly sculpin (CAN_PGR_092001 2022) Clinocottus analis GCA_023055335.1_fCliAna1.0.p 443 538,118,947 219 21,900 25.91
250 woolly sculpin (alternate hap CAN_PGR_092001 2022) Clinocottus analis GCA_023055415.1_fCliAna1.0.a 171 534,899,999 222 22,200 25.81
251 Wuchang bream Megalobrama amblycephala GCF_018812025.1_ASM1881202v1 243 1,109,888,616 1,281 1,913,768 43.12
252 yellow catfish (hzauxx_2018 2022) Tachysurus fulvidraco GCF_022655615.1_HZAU_PFXX_2.0 517 712,016,913 817 399,063 35.54
253 yellow catfish (Tf-2017 2018) Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 663 713,810,725 1,760 6,333,458 35.55
254 yellow perch (YP-PL-M2 2019) Perca flavescens GCF_004354835.1_PFLA_1.0 268 877,456,336 831 414,502 35.96
255 yellowfin seabream (v.2019 alternate hap 2020) Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype 349 47,986,553 80 8,000 20.44
256 yellowfin seabream (v.2019 primary hap 2020) Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 66 685,144,197 149 14,900 22.83
257 yellowfin tuna (alternate hap 2021) Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype 640 786,643,039 0 0 28.56
258 yellowfin tuna (primary hap 2021) Thunnus albacares GCF_914725855.1_fThuAlb1.1 68 792,101,331 70 23,300 27.09
259 yellowtail amberjack (v2 SW California HSWRI2012SDOR001 2017) Seriola lalandi dorsalis GCF_002814215.2_Sedor1 98,345 731,697,021 33,661 16,134,034 25.04
260 Zealand spotty Notolabrus celidotus GCF_009762535.1_fNotCel1.pri 467 846,744,125 1,135 14,268,481 33.39
261 zebra mbuna Maylandia zebra GCF_000238955.4_M_zebra_UMD2a 1,690 957,485,262 641 64,100 31.59
262 zebrafish (T5D 2021) Danio rerio GCA_018400075.1_ASM1840007v1 25 1,338,639,271 20,876 1,845,030 61.21
263 zebrafish (WGS:CAHPTA01 2020) Danio rerio GCA_903684865.1_fDreABH1.1 1,252 1,354,075,779 712 197,709 61.16
264 zebrafish (WGS:CAHPTB02 2020) Danio rerio GCA_903684855.2_fDreTuH1.2 755 1,360,506,095 1,352 82,877 60.94
265 zebrafish (fDanRer4 alternate hap 2022) Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype 4,719 458,104,506 0 0 59.54
266 zebrafish (fDanRer4 primary hap 2022) Danio rerio GCA_944039275.1_fDanRer4.1 73 1,413,675,870 381 122,395 51.91
267 zebrafish GRCz11 Danio rerio GCF_000002035.6_GRCz11 1,923 1,679,203,469 20,258 4,693,618 57.84
268 zig-zag eel (alternate hap) Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
269 zig-zag eel (v1.2 2019 refseq) Mastacembelus armatus GCF_900324485.2_fMasArm1.2 123 591,951,587 238 13,231,344 23.47
270 zig-zag eel (v1.3 2021 genbank) Mastacembelus armatus GCA_900324485.3_fMasArm1.3 123 591,951,591 238 13,231,344 23.47
TOTALS:total assembly count 270 2,262,747 266,346,860,462 7,167,424 5,263,370,102  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 159 assemblies assembly stats track stats
Mammals 407 assemblies assembly stats track stats
Birds 270 assemblies assembly stats track stats
Fishes 270 assemblies assembly stats track stats
other vertebrates 114 assemblies assembly stats track stats
Invertebrates 583 assemblies assembly stats track stats
Plants 230 assemblies assembly stats track stats
Fungi 544 assemblies assembly stats track stats
Viruses 259 assemblies assembly stats track stats
Bacteria 64 assemblies assembly stats track stats
legacy/superseded 336 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 445 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats