Fish Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 allis shad Alosa alosa GCF_017589495.1_AALO_Geno_1.1 1,095 854,464,681 1,541 767,536 38.87
2 Amazon molly Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 3,985 748,923,461 36,429 34,735,552 26.04
3 American shad Alosa sapidissima GCF_018492685.1_fAloSap1.pri 74 903,581,644 1,639 4,995,812 39.49
4 annual killifish Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 29,784 866,963,076 1,025,519 172,836,531 28.75
5 Arctic char Salvelinus alpinus GCF_002910315.2_ASM291031v2 15,253 2,169,549,916 1,718,015 148,387,905 44.87
6 Aristotle's catfish (2022 VGP) Silurus aristotelis GCA_946808225.1_fSilAri3.1 241 800,118,513 795 159,000 42.15
7 Arkansas darter Etheostoma cragini GCF_013103735.1_CSU_Ecrag_1.0 4,664 643,078,674 35,052 3,314,141 26.64
8 Asian bonytongue (2019 VGP) Scleropages formosus GCF_900964775.1_fSclFor1.1 72 784,563,014 145 41,360 26.53
9 Asian bonytongue (alt pseudohaplotype VGP) Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
10 Atlantic cod (2019 VGP) Gadus morhua GCF_902167405.1_gadMor3.0 227 669,966,409 1,216 23,573,743 33.47
11 Atlantic cod (alt pseudohaplotype VGP) Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
12 Atlantic halibut (2019 refseq VGP) Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri 57 596,792,615 290 3,413,390 24.17
13 Atlantic halibut (alt pseudohaplotype 2019 VGP) Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
14 Atlantic herring (v2) Clupea harengus GCF_900700415.2_Ch_v2.0.2 1,724 786,325,606 1,990 870,691 32.57
15 Atlantic horse mackerel (2021 VGP) Trachurus trachurus GCA_905171665.2_fTraTra1.2 153 801,243,942 222 29,162 32.85
16 Atlantic salmon (refseq 2021) Salmo salar GCF_905237065.1_Ssal_v3.1 4,011 2,756,584,103 211 21,100 59.39
17 Atlantic salmon (Sally 2015) Salmo salar GCF_000233375.1_ICSASG_v2 232,152 2,966,861,068 138,207 348,002,350 51.87
18 Atlantic turbot (AOZZmale01 2020) Scophthalmus maximus GCF_013347765.1_ASM1334776v1 127 556,696,898 51 2,160 25.82
19 ballan wrasse Labrus bergylta GCF_900080235.1_BallGen_V1 13,466 805,480,521 257 137,791 30.40
20 banded archerfish Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri 96 621,503,431 98 1,137,472 28.10
21 barbel (2022 VGP) Barbus barbus GCA_936440315.1_fBarBab1.1 92 1,584,929,904 108 21,600 42.15
22 barramundi perch Lates calcarifer GCF_001640805.1_ASM164080v1 3,808 668,481,366 110 11,462 23.94
23 bicolor damselfish Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 5,817 800,485,922 44,409 50,762,588 23.44
24 black rockcod Notothenia coriiceps GCF_000735185.1_NC01 38,657 636,613,682 59,164 13,288,261 29.51
25 blue tilapia (BGI-SZ) Oreochromis aureus GCF_005870065.1_ASM587006v1 12,952 918,953,803 53,539 93,301,056 23.12
26 blue tilapia (Guangdong) Oreochromis aureus GCF_013358895.1_ZZ_aureus 304 1,005,575,223 723 285,885 32.10
27 blunt-snouted clingfish (2019 refseq VGP) Gouania willdenowi GCF_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
28 blunt-snouted clingfish (alt pseudohaplotype VGP) Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
29 Boeseman's rainbowfish Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri 93 865,592,457 440 3,217,901 29.18
30 bonti-bonti (T.bonti 2022 VGP) Telmatherina bonti GCA_933228915.1_fTelBon1.1 146 986,039,709 1,329 265,800 40.16
31 bony fishes Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri 124 752,621,858 700 7,178,561 39.10
32 brown-marbled grouper (2020) Epinephelus fuscoguttatus GCF_011397635.1_E.fuscoguttatus.final_Chr_v1 26 1,047,012,452 205 20,500 31.35
33 Burton's mouthbrooder (Broad 2011) Haplochromis burtoni GCF_000239415.1_AstBur1.0 7,994 831,398,301 61,073 132,461,904 20.26
34 Burton's mouthbrooder (NCSU 2021) Haplochromis burtoni GCF_018398535.1_NCSU_Asbu1 7,421 854,588,855 32,418 93,726,465 23.62
35 butterfish Scatophagus argus GCF_020382885.2_fScaArg1.pri 48 570,802,272 77 1,711,559 21.27
36 channel catfish (USDA103 v2 2019) Ictalurus punctatus GCF_001660625.2_IpCoco_1.2 9,342 821,768,289 25,285 11,805,805 33.87
37 channel bull blenny (2019 refseq VGP) Cottoperca gobio GCF_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
38 channel bull blenny (alt pseudohaplotype 2019 VGP) Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
39 chichlid (S. diagramma) Simochromis diagramma GCF_900408965.1_fSimDia1.1 823 848,827,444 942 39,011 29.00
40 Chinese large-mouth catfish (SWU-2019-XX 2020) Silurus meridionalis GCF_014805685.1_ASM1480568v1 286 742,596,447 597 1,345,608 37.56
41 Chinook salmon (v1 2018 female) Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 14,028 2,425,709,133 272,151 66,933,393 47.70
42 Chinook salmon (v2 2021 male) Oncorhynchus tshawytscha GCF_018296145.1_Otsh_v2.0 7,665 2,294,859,190 2,334 231,729 54.65
43 chum salmon Oncorhynchus keta GCF_012931545.1_Oket_V1 25,265 1,853,104,330 242,238 86,386,492 46.35
44 climbing perch (v1.2 2018 refseq VGP) Anabas testudineus GCF_900324465.2_fAnaTes1.2 51 555,658,001 266 3,606,496 21.33
45 climbing perch (alt pseudohaplotype 2019 VGP) Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
46 clown anemonefish Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 6,405 880,720,895 1,406 545,178 32.00
47 coho salmon Oncorhynchus kisutch GCF_002021735.2_Okis_V2 4,087 2,375,911,593 5,631 469,357 54.83
48 common carp SPL01 (2021) Cyprinus carpio GCF_018340385.1_ASM1834038v1 6,701 1,680,134,903 26,351 7,988,566 38.58
49 convict blenny (chichlid 2021 VGP) Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri 512 6,032,307,556 2,580 52,780,824 99.13
50 copperband butterflyfish Chelmon rostratus GCF_017976325.1_fCheRos1.pri 29 644,208,431 60 11,380 21.59
51 cunner (2021 VGP) Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur 64 723,582,185 283 4,256,220 27.67
52 dark-edged splitfin Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 72 1,150,004,004 409 6,172,100 38.37
53 delta smelt Hypomesus transpacificus GCF_021917145.1_fHypTra1 376 437,273,953 1,474 354,099 32.53
54 denticle herring (2019 VGP) Denticeps clupeoides GCF_900700375.1_fDenClu1.1 460 567,401,054 464 4,648,387 28.83
55 denticle herring (alt pseudohaplotype 2019 VGP) Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
56 eastern happy Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 249 880,445,564 490 1,186,663 30.80
57 electric eel (MRS-EE1 2018 U Wisconsin) Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE 8,786 551,880,868 119,361 17,042,720 21.59
58 electric eel (2020 VGP) Electrophorus electricus GCF_013358815.1_fEleEle1.pri 89 589,358,956 227 10,599,768 24.89
59 elephant fish B.brachyistius (T26 2022) Brienomyrus brachyistius GCF_023856365.1_BBRACH_0.4 1,425 988,088,817 234 112,552 35.02
60 emerald rockcod Trematomus bernacchii GCF_902827165.1_fTreBer1.1 864 867,125,071 932 117,692 40.13
61 European perch Perca fluviatilis GCF_010015445.1_GENO_Pfluv_1.0 303 951,345,774 801 292,795 37.11
62 fathead minnow Pimephales promelas GCF_016745375.1_EPA_FHM_2.0 911 1,066,429,022 5,594 141,038,611 35.72
63 flathead mullet Mugil cephalus GCF_022458985.1_CIBA_Mcephalus_1.1 24 634,849,760 445 222,500 24.79
64 flier cichlid (MPI-CPG 2019 refseq VGP) Archocentrus centrarchus GCF_007364275.1_fArcCen1 188 932,930,362 744 16,903,477 30.69
65 flier cichlid (alt pseudohaplotype MPI-CPG 2019 VGP) Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
66 freshwater garfish (fXenCan1 2020 VGP) Xenentodon cancila GCA_014839995.1_fXenCan1.pri 410 736,214,936 1,373 7,503,584 27.54
67 giant grouper Epinephelus lanceolatus GCF_005281545.1_ASM528154v1 4,201 1,087,415,941 23,415 39,254,828 30.31
68 gilthead seabream (2019 VGP) Sparus aurata GCF_900880675.1_fSpaAur1.1 176 833,595,063 1,050 342,268 25.72
69 gilthead seabream (alt pseudohaplotype 2019 VGP) Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
70 golden-line barbel Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 31,277 1,750,287,761 136,894 182,848,609 37.17
71 goldfish Carassius auratus GCF_003368295.1_ASM336829v1 6,216 1,820,635,050 2,247 224,700 40.21
72 great blue-spotted mudskipper Boleophthalmus pectinirostris GCF_000788275.1_BP.fa 16,620 955,752,150 92,327 65,847,082 42.56
73 greater amberjack Seriola dumerili GCF_002260705.1_Sdu_1.0 34,656 677,686,174 9,742 5,561,840 24.75
74 greater pipefish (v1.2 2020 VGP) Syngnathus acus GCF_901709675.1_fSynAcu1.2 87 324,331,233 43 13,700 25.95
75 greater pipefish (alt pseudohaplotype 2019 VGP) Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
76 green swordtail Xiphophorus hellerii GCF_003331165.1_Xiphophorus_hellerii-4.1 87 732,906,125 661 2,127,807 28.89
77 Gulf pipefish (Florida 2022) Syngnathus scovelli GCF_024217435.1_RoL_Ssco_1.1 496 428,432,749 11 220 43.65
78 guppy Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT 2,767 731,621,225 458,354 67,451,939 25.67
79 honeycomb rockfish Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri 138 800,904,020 215 1,393,892 36.28
80 horned golden-line barbel Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 164,172 1,655,785,943 150,790 134,307,852 35.97
81 humphead wrasse Cheilinus undulatus GCF_018320785.1_ASM1832078v1 46 1,173,472,134 284 28,400 33.01
82 Indian medaka Oryzias melastigma GCF_002922805.2_ASM292280v2 8,493 778,703,520 51,550 40,471,418 33.35
83 Indian glassy fish (2019 VGP) Parambassis ranga GCF_900634625.1_fParRan2.1 156 551,012,959 1,523 10,561,548 25.10
84 Indian glassy fish (alt pseudohaplotype 2019 VGP) Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
85 Indo-Pacific tarpon (2020 VGP) Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri 207 959,258,046 63 283,098 22.11
86 Japanese flounder Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 9,525 643,911,827 40,314 122,165,179 17.39
87 Japanese medaka Oryzias latipes GCF_002234675.1_ASM223467v1 25 734,057,086 491 491,000 34.95
88 jewelled blenny (2019 VGP) Salarias fasciatus GCF_902148845.1_fSalaFa1.1 203 797,507,141 602 10,447,897 26.61
89 jewelled blenny (alt pseudohaplotype 2019 VGP) Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
90 kelp grouper (mb 2019) Epinephelus moara GCF_006386435.1_YSFRI_EMoa_1.0 4,563 1,030,477,684 48,394 30,797,138 29.13
91 lake trout Salvelinus namaycush GCF_016432855.1_SaNama_1.0 4,121 2,345,513,378 3,264 326,400 54.51
92 lake whitefish (EN20210322 male 2021 Laval U) Coregonus clupeaformis GCF_018398675.1_ASM1839867v1 6,355 2,682,612,311 1,716 74,680 61.22
93 lake whitefish (EN_2021a female 2021 Laval U) Coregonus clupeaformis GCF_020615455.1_ASM2061545v1 7,334 2,753,287,365 1,159 120,877 61.18
94 large yellow croaker Larimichthys crocea GCF_000972845.2_L_crocea_2.0 9,998 657,939,657 7,424 2,166,101 24.87
95 largemouth bass Micropterus salmoides GCF_014851395.1_ASM1485139v1 4,753 963,613,914 2,909 1,454,500 29.63
96 largescale foureyes (2020 VGP) Anableps anableps GCA_014839685.1_fAnaAna1.pri 33 867,632,993 107 306,559 29.88
97 leopard coralgrouper Plectropomus leopardus GCF_008729295.1_YSFRI_Pleo_2.0 94,260 895,705,288 3,611 15,810,414 29.38
98 live sharksucker (2019 VGP) Echeneis naucrates GCF_900963305.1_fEcheNa1.1 38 544,229,245 140 599,356 21.82
99 live sharksucker (alt pseudohaplotype 2019 VGP) Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
100 longspined bullhead (2021 VGP) Taurulus bubalis GCA_910589615.1_fTauBub2.1 27 615,153,901 242 77,100 28.62
101 lumpfish (2019 refseq VGP) Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri 48 572,885,595 347 10,182,204 28.09
102 lumpfish (alt pseudohaplotype 2019 VGP) Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
103 lyretail cichlid Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 9,083 847,883,811 109,100 161,986,532 19.51
104 mandarin fish Siniperca chuatsi GCF_020085105.1_ASM2008510v1 65 718,820,513 93 9,300 27.44
105 mangrove rivulus Kryptolebias marmoratus GCF_001649575.2_ASM164957v2 300 680,655,669 32,278 38,822,415 27.34
106 Mexican tetra (2017 WashU) Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 2,415 1,335,239,194 621 43,642,769 42.58
107 Mexican tetra (Pach_M1 Pachon cave 2021) Astyanax mexicanus GCA_019721115.1_AMEX_1.1 195 1,378,811,567 334 165,606 47.76
108 Mexican tetra (ESR-SI-001 2022) Astyanax mexicanus GCF_023375975.1_AstMex3_surface 109 1,373,169,186 14 7,000 47.33
109 milkfish (2019 VGP) Chanos chanos GCF_902362185.1_fChaCha1.1 31 656,929,047 112 4,230,332 26.35
110 milkfish (alt pseudohaplotype 2019 VGP) Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
111 Monterrey platyfish Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 68 688,541,509 229 1,031,462 28.28
112 mudskipper P.magnuspinnatus (2020 VGP) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri 124 752,621,857 700 7,178,561 39.10
113 mudskipper P.magnuspinnatus (alt pseudohaplotype 2020 VGP) Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
114 mummichog (Maine) Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 10,180 1,021,898,560 123,625 89,424,232 26.05
115 mummichog (U. Missouri) Fundulus heteroclitus GCF_011125445.2_MU-UCD_Fhet_4.1 1,031 1,203,505,739 2,820 1,407,874 33.01
116 New Zealand spotty (2019 VGP) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
117 New Zealand spotty (alt pseudohaplotype 2019 VGP) Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
118 Nile tilapia Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU 2,460 1,005,681,550 551 55,001 31.17
119 ninespine stickleback Pungitius pungitius GCF_902500615.1_NSP_V7 1,667 466,599,196 341 34,100 25.74
120 northern pike Esox lucius GCF_004634155.1_Eluc_v4 811 940,906,975 584 58,400 33.32
121 northern pike (alt pseudohaplotype 2020 VGP) Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
122 northern pike (2020 refseq VGP) Esox lucius GCF_011004845.1_fEsoLuc1.pri 53 918,748,614 112 1,022,735 32.97
123 Old Calabar mormyrid Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 4,666 799,417,351 49,579 63,880,082 20.88
124 orangethroat darter Etheostoma spectabile GCF_008692095.1_UIUC_Espe_1.0 3,119 854,806,606 101,221 4,031,177 31.23
125 orbiculate cardinalfish (2019 VGP) Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 340 1,342,662,642 1,844 3,566,081 48.65
126 orbiculate cardinalfish (alt pseudohaplotype 2019 VGP) Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
127 P.nyererei 1_Seehausen Pundamilia nyererei GCF_000239375.1_PunNye1.0 7,233 830,129,318 60,817 131,372,167 20.67
128 Pacific halibut (PH-IPHC-18 2020) Hippoglossus stenolepis GCF_013339905.1_IPHC_HiSten_1.0 120 594,145,200 219 21,900 25.27
129 Pacific halibut (QCI-W04-F060 2022) Hippoglossus stenolepis GCF_022539355.2_HSTE1.2 53 602,165,188 1,131 325,822 24.80
130 peladilla (galaxoid fish 2021 VGP) Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri 41 461,946,147 1,158 8,155,958 27.72
131 pike-perch Sander lucioperca GCF_008315115.2_SLUC_FBN_1.2 337 901,238,333 711 194,059 36.52
132 pinecone soldierfish (2019 VGP) Myripristis murdjan GCF_902150065.1_fMyrMur1.1 87 835,254,674 253 1,865,832 28.16
133 pinecone soldierfish (alt pseudohaplotype 2019 VGP) Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
134 pink salmon Oncorhynchus gorbuscha GCF_021184085.1_OgorEven_v1.0 19,028 2,690,283,663 5,213 1,188,012 57.36
135 ploughfish Gymnodraco acuticeps GCF_902827175.1_fGymAcu1.1 2,618 996,888,495 1,569 192,604 45.12
136 prehistoric monster fish (2019 refseq VGP) Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
137 prehistoric monster fish (alt pseudohaplotype 2019 VGP) Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
138 rainbow trout (Swanson) Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 131,961 2,178,999,613 427,894 251,515,894 44.07
139 rainbow trout (Arlee) Oncorhynchus mykiss GCF_013265735.2_USDA_OmykA_1.1 743 2,341,688,614 486 6,184,519 53.80
140 red-bellied piranha (Pna-1 2016) Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 283,518 1,285,352,492 62,964 33,286,579 34.80
141 red-bellied piranha (2020 VGP) Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri 55 1,222,050,449 303 10,159,184 35.79
142 reedfish (alt pseudohaplotype VGP) Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
143 Rio pearlfish (Nwh7 v2 2021) Nematolebias whitei GCF_014905685.2_NemWhi1 18,998 1,218,316,901 100,521 97,663,390 42.85
144 river trout Salmo trutta GCF_901001165.1_fSalTru1.1 1,441 2,371,880,186 3,941 73,600,705 52.45
145 rock gunnel (2021 VGP) Pholis gunnellus GCA_910591455.2_fPhoGun1.2 101 588,696,950 418 137,000 24.74
146 sailfin molly Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 17,986 815,142,410 41,735 135,369,525 22.54
147 Senegalese sole Solea senegalensis GCF_019176455.1_IFAPA_SoseM_1 1,937 603,535,267 662 65,441 28.32
148 sheepshead minnow Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 9,259 1,035,184,475 113,210 135,655,219 27.50
149 shortfin molly Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 18,102 801,710,366 37,507 121,884,386 22.83
150 Siamese fighting fish (v3 2020 VGP) Betta splendens GCF_900634795.3_fBetSpl5.3 70 441,388,503 328 29,269 23.93
151 Siamese fighting fish (alt pseudohaplotype 2019 VGP) Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
152 smallmouth bass Micropterus dolomieu GCF_021292245.1_ASM2129224v1 15,020 829,587,215 34,581 3,005,762 28.32
153 sockeye salmon (On170113-E2 v2 2019) Oncorhynchus nerka GCF_006149115.2_Oner_1.1 34,757 1,925,212,521 25,658 74,077,259 48.61
154 South Georgia icefish Pseudochaenichthys georgianus GCF_902827115.1_fPseGeo1.1 1,563 1,026,101,545 2,461 639,506 45.87
155 southern platyfish Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male 102 704,321,165 156 3,327,905 28.29
156 southern bluefin tuna Thunnus maccoyii GCF_910596095.1_fThuMac1.1 58 782,423,979 184 31,592 26.89
157 Southwestern China cavefish Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 85,682 1,632,718,266 168,741 119,821,887 36.99
158 spiny chromis Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 30,414 991,584,656 209,115 148,830,929 22.65
159 sterlet (maternal 2020 VGP) Acipenser ruthenus GCA_902713425.1_fAciRut3.1_maternal_haplotype 245 1,638,742,712 402 87,383 39.24
160 sterlet (paternal 2020 VGP) Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype 224 1,663,879,616 422 83,585 39.19
161 stone loach (2022 VGP) Barbatula barbatula GCA_947034865.1_fBarBar1.1 100 617,663,352 825 165,000 34.31
162 striped catfish Vietnam Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius 567 715,760,110 23,755 19,239,465 30.11
163 striped sea-bass Morone saxatilis GCF_004916995.1_NCSU_SB_2.0 630 598,127,127 73,335 5,158,999 22.76
164 striped catfish Indonesia Pangasianodon hypophthalmus GCF_009078355.1_GENO_Phyp_1.0 150 758,973,678 463 175,919 32.50
165 Sumatra barb Puntigrus tetrazona GCF_018831695.1_ASM1883169v1 1,122 730,818,536 5,075 394,129 32.49
166 swamp eel Monopterus albus GCF_001952655.1_M_albus_1.0 20,622 684,144,148 51,257 54,828,134 21.96
167 swordfish Xiphias gladius GCF_016859285.1_ASM1685928v1 1,482 691,780,295 449 224,500 23.97
168 tambaqui Colossoma macropomum GCF_904425465.1_Colossoma_macropomum 1,269 1,221,847,006 420 37,940 35.37
169 three-spined stickleback Gasterosteus aculeatus aculeatus GCF_016920845.1_GAculeatus_UGA_version5 2,937 471,894,361 3,125 3,574,186 21.96
170 tiger tail seahorse (QL1 v2 2016) Hippocampus comes GCF_001891065.2_H_comes_QL1_v1.1 32,914 492,131,402 22,977 34,075,199 24.57
171 tongue sole Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 29,643 470,199,494 33,269 24,157,720 24.84
172 torafugu (2019 VGP) Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
173 torafugu (alt pseudohaplotype 2019 VGP) Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
174 turbot (ysfricsl-2021 2022) Scophthalmus maximus GCF_022379125.1_ASM2237912v1 28 538,234,718 0 0 24.37
175 turquoise killifish Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 5,897 1,242,518,059 85,562 385,709,548 27.64
176 warty frogfish (2020 VGP) Antennarius maculatus GCA_013358685.1_fAntMac1.pri 155 549,949,511 219 733,384 29.79
177 western mosquitofish Gambusia affinis GCF_019740435.1_SWU_Gaff_1.0 37 680,166,006 181 17,569,858 26.88
178 White Sands pupfish Cyprinodon tularosa GCF_016077235.1_ASM1607723v1 2,003 1,086,882,241 0 0 38.10
179 wolf-eel Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 10,315 611,444,226 23,891 43,723,504 22.11
180 Wuchang bream Megalobrama amblycephala GCF_018812025.1_ASM1881202v1 243 1,109,888,616 1,281 1,913,768 43.12
181 yellow catfish (hzauxx_2018 2022) Tachysurus fulvidraco GCF_022655615.1_HZAU_PFXX_2.0 517 712,016,913 817 399,063 35.54
182 yellow catfish (Tf-2017 2018) Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 663 713,810,725 1,760 6,333,458 35.55
183 yellow perch (YP-PL-M2 2019) Perca flavescens GCF_004354835.1_PFLA_1.0 268 877,456,336 831 414,502 35.96
184 yellowfin seabream Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 66 685,144,197 149 14,900 22.83
185 yellowfin tuna Thunnus albacares GCF_914725855.1_fThuAlb1.1 68 792,101,331 70 23,300 27.09
186 yellowtail amberjack Seriola lalandi dorsalis GCF_002814215.1_Sedor1 99,598 732,509,836 33,664 16,134,094 25.02
187 Zealand spotty Notolabrus celidotus GCF_009762535.1_fNotCel1.pri 467 846,744,125 1,135 14,268,481 33.39
188 zebra mbuna Maylandia zebra GCF_000238955.4_M_zebra_UMD2a 1,690 957,485,262 641 64,100 31.59
189 zebrafish (T5D 2021) Danio rerio GCA_018400075.1_ASM1840007v1 25 1,338,639,271 20,876 1,845,030 61.21
190 zebrafish (WGS:CAHPTA01 2020 VGP) Danio rerio GCA_903684865.1_fDreABH1.1 1,252 1,354,075,779 712 197,709 50.30
191 zebrafish (WGS:CAHPTB02 2020 VGP) Danio rerio GCA_903684855.2_fDreTuH1.2 755 1,360,506,095 1,352 82,877 50.47
192 zebrafish (WGS:CALUEM01 2022 VGP) Danio rerio GCA_944039275.1_fDanRer4.1 73 1,413,675,870 381 122,395 51.91
193 zebrafish GRCz11 Danio rerio GCF_000002035.6_GRCz11 1,923 1,679,203,469 20,258 4,693,618 60.50
194 zig-zag eel (alt pseudohaplotype VGP) Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
195 zig-zag eel (v1.2 2019 VGP) Mastacembelus armatus GCF_900324485.2_fMasArm1.2 123 591,951,587 238 13,231,344 23.47
TOTALS:total assembly count 195 1,971,202 195,651,241,341 7,110,723 4,812,909,508  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 57 assemblies assembly stats track stats
Mammals 348 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats