Fish Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Amazon molly Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 3,985 748,923,461 36,429 34,735,552 26.04
2 Arctic char Salvelinus alpinus GCF_002910315.2_ASM291031v2 15,253 2,169,549,916 1,718,015 148,387,905 44.87
3 Asian bonytongue Scleropages formosus GCF_900964775.1_fSclFor1.1 72 784,563,014 145 41,360 26.53
4 Atlantic cod Gadus morhua GCF_902167405.1_gadMor3.0 227 669,966,409 1,216 23,573,743 33.47
5 Atlantic herring Clupea harengus GCF_900700415.1_Ch_v2.0.2 27 725,686,888 1,963 859,396 32.28
6 Atlantic salmon Salmo salar GCF_000233375.1_ICSASG_v2 232,152 2,966,861,068 138,207 348,002,350 51.87
7 ballan wrasse Labrus bergylta GCF_900080235.1_BallGen_V1 13,466 805,480,521 257 137,791 30.40
8 barramundi perch Lates calcarifer GCF_001640805.1_ASM164080v1 3,808 668,481,366 110 11,462 23.94
9 bicolor damselfish Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 5,817 800,485,922 44,409 50,762,588 23.44
10 black rockcod Notothenia coriiceps GCF_000735185.1_NC01 38,657 636,613,682 59,164 13,288,261 29.51
11 blue tilapia Oreochromis aureus GCF_005870065.1_ASM587006v1 12,952 918,953,803 53,539 93,301,056 23.12
12 blunt-snouted clingfish Gouania willdenowi GCF_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
13 bony fishes Pundamilia nyererei GCF_000239375.1_PunNye1.0 7,233 830,129,318 60,817 131,372,167 20.67
14 bony fishes Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 29,784 866,963,076 1,025,519 172,836,531 28.75
15 bony fishes Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 85,682 1,632,718,266 168,741 119,821,887 36.99
16 bony fishes Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 164,172 1,655,785,943 150,790 134,307,852 35.97
17 bony fishes Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 31,277 1,750,287,761 136,894 182,848,609 37.17
18 bony fishes Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 4,666 799,417,351 49,579 63,880,082 20.88
19 bony fishes Cottoperca gobio GCF_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
20 Burton's mouthbrooder Haplochromis burtoni GCF_000239415.1_AstBur1.0 7,994 831,398,301 61,073 132,461,904 20.26
21 channel catfish Ictalurus punctatus GCF_001660625.1_IpCoco_1.2 9,341 783,274,721 25,203 11,381,915 33.99
22 Chinook salmon Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 14,028 2,425,709,133 272,151 66,933,393 47.70
23 climbing perch Anabas testudineus GCF_900324465.1_fAnaTes1.1 70 569,722,067 292 7,669,072 21.87
24 clown anemonefish Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 6,405 880,720,895 1,406 545,178 32.00
25 coho salmon Oncorhynchus kisutch GCF_002021735.2_Okis_V2 4,087 2,375,911,593 5,631 469,357 54.83
26 common carp Cyprinus carpio GCF_000951615.1_common_carp_genome 9,378 1,713,658,011 57,940 43,277,959 37.43
27 denticle herring Denticeps clupeoides GCF_900700375.1_fDenClu1.1 460 567,401,054 464 4,648,387 28.83
28 eastern happy Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 249 880,445,564 490 1,186,663 30.80
29 electric eel Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE 8,786 551,880,868 119,361 17,042,720 21.59
30 flier cichlid Archocentrus centrarchus GCF_007364275.1_fArcCen1 188 932,930,362 744 16,903,477 30.69
31 gilthead seabream Sparus aurata GCF_900880675.1_fSpaAur1.1 176 833,595,063 1,050 342,268 25.72
32 goldfish Carassius auratus GCF_003368295.1_ASM336829v1 6,216 1,820,635,050 2,247 224,700 40.21
33 great blue-spotted mudskipper Boleophthalmus pectinirostris GCF_000788275.1_BP.fa 16,620 955,752,150 92,327 65,847,082 42.56
34 greater amberjack Seriola dumerili GCF_002260705.1_Sdu_1.0 34,656 677,686,174 9,742 5,561,840 24.75
35 guppy Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT 2,767 731,621,225 458,354 67,451,939 25.67
36 Indian glassy fish Parambassis ranga GCF_900634625.1_fParRan2.1 156 551,012,959 1,523 10,561,548 25.10
37 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA 8,603 779,469,774 51,440 41,237,672 33.31
38 Japanese flounder Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 9,525 643,911,827 40,314 122,165,179 17.39
39 Japanese medaka Oryzias latipes GCF_002234675.1_ASM223467v1 25 734,057,086 491 491,000 34.95
40 jewelled blenny Salarias fasciatus GCF_902148845.1_fSalaFa1.1 203 797,507,141 602 10,447,897 26.61
41 large yellow croaker Larimichthys crocea GCF_000972845.2_L_crocea_2.0 9,998 657,939,657 7,424 2,166,101 24.87
42 live sharksucker Echeneis naucrates GCF_900963305.1_fEcheNa1.1 38 544,229,245 140 599,356 21.82
43 lyretail cichlid Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 9,083 847,883,811 109,100 161,986,532 19.51
44 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 3,073 680,366,784 29,388 38,533,415 27.35
45 Mexican tetra Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 2,415 1,335,239,194 621 43,642,769 42.58
46 milkfish Chanos chanos GCF_902362185.1_fChaCha1.1 31 656,929,047 112 4,230,332 26.35
47 Monterrey platyfish Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 68 688,541,509 229 1,031,462 28.28
48 mummichog Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 10,180 1,021,898,560 123,625 89,424,232 26.05
49 Nile tilapia Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU 2,460 1,005,681,550 551 55,001 31.17
50 northern pike Esox lucius GCF_004634155.1_Eluc_v4 811 940,906,975 584 58,400 33.32
51 orbiculate cardinalfish Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 340 1,342,662,642 1,844 3,566,081 48.65
52 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 1,313 900,477,767 94 24,999 36.36
53 pinecone soldierfish Myripristis murdjan GCF_902150065.1_fMyrMur1.1 87 835,254,674 253 1,865,832 28.16
54 rainbow trout Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 131,961 2,178,999,613 427,894 251,515,894 44.07
55 red-bellied piranha Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 283,518 1,285,352,492 62,964 33,286,579 34.80
56 river trout Salmo trutta GCF_901001165.1_fSalTru1.1 1,441 2,371,880,186 3,941 73,600,705 52.45
57 sailfin molly Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 17,986 815,142,410 41,735 135,369,525 22.54
58 sheepshead minnow Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 9,259 1,035,184,475 113,210 135,655,219 27.50
59 shortfin molly Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 18,102 801,710,366 37,507 121,884,386 22.83
60 Siamese fighting fish Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
61 sockeye salmon Oncorhynchus nerka GCF_006149115.1_Oner_1.0 36,124 1,927,141,915 25,659 74,077,260 48.53
62 southern platyfish Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male 102 704,321,165 156 3,327,905 28.29
63 spiny chromis Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 30,414 991,584,656 209,115 148,830,929 22.65
64 striped catfish Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius 567 715,760,110 23,755 19,239,465 30.11
65 swamp eel Monopterus albus GCF_001952655.1_M_albus_1.0 20,622 684,144,148 51,257 54,828,134 21.96
66 tiger tail seahorse Hippocampus comes GCF_001891065.1_H_comes_QL1_v1 37,377 493,775,940 23,101 34,408,932 24.52
67 tongue sole Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 29,643 470,199,494 33,269 24,157,720 24.84
68 torafugu Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
69 turquoise killifish Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 5,897 1,242,518,059 85,562 385,709,548 27.64
70 wolf-eel Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 10,315 611,444,226 23,891 43,723,504 22.11
71 yellow catfish Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 663 713,810,725 1,760 6,333,458 35.55
72 yellow perch Perca flavescens GCF_004354835.1_PFLA_1.0 268 877,456,336 831 414,502 35.96
73 yellowtail amberjack Seriola lalandi dorsalis GCF_002814215.1_Sedor1 99,598 732,509,836 33,664 16,134,094 25.02
74 zebra mbuna Maylandia zebra GCF_000238955.4_M_zebra_UMD2a 1,690 957,485,262 641 64,100 31.59
75 zebrafish Danio rerio GCF_000002035.6_GRCz11 1,923 1,679,203,469 20,258 4,693,618 60.50
76 zig-zag eel Mastacembelus armatus GCF_900324485.1_fMasArm1.1 126 593,082,472 235 14,056,798 23.45
TOTALS:total assembly count 76 1,567,617 76,181,945,295 6,345,344 4,094,141,817  

Additional hubs with collections of assemblies
Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates