Vertebrate Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 Abingdon island giant tortoise[IGV] Chelonoidis abingdonii GCF_003597395.1_ASM359739v1 SAMN07840320 PRJNA416050 2018-09-25
2 Aeolian wall lizard (La Canna islet alternate hap 2022)[IGV] Podarcis raffonei GCA_027172095.1_rPodRaf1.alt SAMN28455423 PRJNA839508 2022-12-21
3 Aeolian wall lizard (La Canna islet primary hap 2022 refseq)[IGV] Podarcis raffonei GCF_027172205.1_rPodRaf1.pri SAMN28455423 PRJNA839511 2022-12-27
4 African bullfrog (1538 2019)[IGV] Pyxicephalus adspersus GCA_004786255.1_Pads_1.0 SAMN08767028 PRJNA439445 2019-04-17
5 African clawed frog (2021)[IGV] Xenopus laevis GCF_017654675.1_Xenopus_laevis_v10.1 SAMN18035302 PRJNA313213 2021-04-12
6 American alligator (2023 refseq)[IGV] Alligator mississippiensis GCF_030867095.1_rAllMis1 SAMN37045233 PRJNA1006701 2023-08-24
7 American alligator (KSC_2009_1 2016)[IGV] Alligator mississippiensis GCF_000281125.3_ASM28112v4 SAMN02981418 PRJNA159843 2016-03-28
8 American eel (EN2019 2024)[IGV] Anguilla rostrata GCF_018555375.3_ASM1855537v3 SAMN18538529 PRJNA718538 2024-03-04
9 Asian vine snake (Xishuangbanna 2023)[IGV] Ahaetulla prasina GCF_028640845.1_ASM2864084v1 SAMN32882022 PRJNA926696 2023-02-22
10 Asiatic toad (SCDJY-AF-19 2020)[IGV] Bufo gargarizans GCF_014858855.1_ASM1485885v1 SAMN14734018 PRJNA628553 2020-10-21
11 Atlantic stingray (hap1 2023 refseq)[IGV] Hypanus sabinus GCF_030144855.1_sHypSab1.hap1 SAMN32745077 PRJNA924072 2023-06-05
12 Atlantic stingray (hap2 2023)[IGV] Hypanus sabinus GCA_030144785.1_sHypSab1.hap2 SAMN32745077 PRJNA924071 2023-06-05
13 Australian saltwater crocodile[IGV] Crocodylus porosus GCF_001723895.1_CroPor_comp1 SAMN03102602 PRJNA163131 2016-09-13
14 axolotl (DD151 2021)[IGV] Ambystoma mexicanum GCA_002915635.3_AmbMex60DD SAMN06554622 PRJNA378970 2021-04-01
15 Blainville's horned lizard (alternate hap 2022)[IGV] Phrynosoma blainvillii GCA_026167975.1_rPhrBla1.0.hap2 SAMN29046554 PRJNA873121 2022-11-14
16 Blainville's horned lizard (primary hap 2022)[IGV] Phrynosoma blainvillii GCA_026167985.1_rPhrBla1.0.hap1 SAMN29046554 PRJNA873122 2022-11-14
17 blonde ray (primary hap 2023)[IGV] Raja brachyura GCA_963514005.1_sRajBra1.1 SAMEA110450105 PRJEB66374 2023-09-28
18 bowfin (hap2 2024)[IGV] Amia calva GCA_036365475.1_fAmiCal2.hap2 SAMN39643085 PRJNA1070664 2024-02-05
19 brown anole (Geneva1000 2022 refseq)[IGV] Anolis sagrei ordinatus GCF_025583915.1_AnoSag2.1 SAMN29589363 PRJNA783271 2022-10-05
20 Brown anole (rAnoSag1 2024)[IGV] Anolis sagrei GCA_037176765.1_rAnoSag1.mat SAMN40144551 PRJNA1080665 2024-03-15
21 Brown anole (rAnoSag1 2024)[IGV] Anolis sagrei GCA_037176775.1_rAnoSag1.pat SAMN40144551 PRJNA1080664 2024-03-15
22 brown house snake (FMNH 251328 2023)[IGV] Boaedon fuliginosus GCA_027560395.1_ASM2756039v1 SAMN24183403 PRJNA790025 2023-01-03
23 brown spotted pit viper[IGV] Protobothrops mucrosquamatus GCF_001527695.2_P.Mucros_1.0 SAMD00043515 PRJDB4386 2016-01-22
24 Burmese python[IGV] Python bivittatus GCF_000186305.1_Python_molurus_bivittatus-5.0.2 SAMN02981298 PRJNA61243 2013-09-15
25 California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022)[IGV] Arizona elegans GCA_022578425.1_rAriEle1.0.a SAMN24818160 PRJNA796780 2022-03-15
26 California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022)[IGV] Arizona elegans GCA_022577455.1_rAriEle1.0.p SAMN24818160 PRJNA796781 2022-03-15
27 Caribbean electric ray (hap1 2024)[IGV] Narcine bancroftii GCA_036971445.1_sNarBan1.hap1 SAMN39325148 PRJNA1063320 2024-03-06
28 Caribbean electric ray (hap2 2024)[IGV] Narcine bancroftii GCA_036971175.1_sNarBan1.hap2 SAMN39325148 PRJNA1063321 2024-03-06
29 central bearded dragon[IGV] Pogona vitticeps GCF_900067755.1_pvi1.1 SAMEA2300447 PRJEB5206 2017-02-28
30 Chinese alligator[IGV] Alligator sinensis GCF_000455745.1_ASM45574v1 SAMN02981559 PRJNA215016 2013-08-29
31 Chinese soft-shelled turtle[IGV] Pelodiscus sinensis GCF_000230535.1_PelSin_1.0 SAMN02981371 PRJNA68233 2012-07-24
32 coelacanth[IGV] Latimeria chalumnae GCF_000225785.1_LatCha1 SAMN00138723 PRJNA56111 2011-09-12
33 coelacanth (fLatCha1 primary hap 2024)[IGV] Latimeria chalumnae GCF_037176945.1_fLatCha1.pri SAMN39710040 PRJNA1072167 2024-03-18
34 common blue-tongued skink (hap1 2024)[IGV] Tiliqua scincoides GCA_035046495.1_rTilSci1.hap1 SAMN37319749 PRJNA1014189 2024-01-03
35 common blue-tongued skink (hap2 2024)[IGV] Tiliqua scincoides GCA_035046505.1_rTilSci1.hap2 SAMN37319749 PRJNA1014188 2024-01-03
36 common frog (alternate hap 2021)[IGV] Rana temporaria GCA_905171725.1_aRanTem1.1_alternate_haplotype SAMEA7521635 PRJEB42170 2021-01-28
37 common garter snake[IGV] Thamnophis sirtalis GCF_001077635.1_Thamnophis_sirtalis-6.0 SAMN03759628 PRJNA189551 2015-06-26
38 common lizard Z.vivipara (primary hap 2023)[IGV] Zootoca vivipara GCF_963506605.1_rZooViv1.1 SAMEA111528662 PRJEB66180 2023-09-20
39 common spadefoot toad (aPelFus1 2024)[IGV] Pelobates fuscus GCA_036172605.1_aPelFus1.pri SAMN39244120 PRJNA1060730 2024-01-26
40 common spadefoot toad (aPelFus1 2024)[IGV] Pelobates fuscus GCF_036172605.1_aPelFus1.pri SAMN39244120 PRJNA1060730 2024-01-26
41 common toad (alternate hap 2021)[IGV] Bufo bufo GCA_905171715.1_aBufBuf1.1_alternate_haplotype SAMEA7521636 PRJEB42169 2021-01-28
42 common toad (primary hap 2021)[IGV] Bufo bufo GCF_905171765.1_aBufBuf1.1 SAMEA7521636 PRJEB42168 2021-01-28
43 common wall lizard[IGV] Podarcis muralis GCF_004329235.1_PodMur_1.0 SAMN10820182 PRJNA515813 2019-03-07
44 corn snake (Columbia U 2023)[IGV] Pantherophis guttatus GCF_029531705.1_CU_Pguttatus_1 SAMN25637154 PRJNA803176 2023-03-31
45 corn snake (EG266 2020)[IGV] Pantherophis guttatus GCF_001185365.1_UNIGE_PanGut_3.0 SAMN12106767 PRJNA268069 2020-04-13
46 corroboree frog (hap1 2023)[IGV] Pseudophryne corroboree GCA_028390055.1_aPseCor3.hap1 SAMN32631236 PRJNA921727 2023-02-01
47 corroboree frog (hap2 2023 refseq)[IGV] Pseudophryne corroboree GCF_028390025.1_aPseCor3.hap2 SAMN32631236 PRJNA921726 2023-02-06
48 Cretan wall lizard (alternate hap 2023)[IGV] Podarcis cretensis GCA_951804955.1_rPodCre2.1_alternate_haplotype SAMEA12110019 PRJEB62766 2023-06-02
49 Cretan wall lizard (primary hap 2023)[IGV] Podarcis cretensis GCA_951804945.1_rPodCre2.1 SAMEA12110019 PRJEB62765 2023-06-02
50 diamondback terrapin (hap1 2023 refseq)[IGV] Malaclemys terrapin pileata GCF_027887155.1_rMalTer1.hap1 SAMN31394215 PRJNA895896 2023-01-18
51 diamondback terrapin (hap2 rMalTer1 2023)[IGV] Malaclemys terrapin pileata GCA_027887205.1_rMalTer1.hap2 SAMN31394215 PRJNA895897 2023-01-18
52 eastern brown snake[IGV] Pseudonaja textilis GCF_900518735.1_EBS10Xv2-PRI SAMEA4800208 PRJEB27869 2018-09-24
53 eastern musk turtle (primary hap 2023)[IGV] Sternotherus odoratus GCA_032164245.1_rSteOdo2_p1.0 SAMN36942441 PRJNA1016400 2023-09-29
54 eastern narrow-mouthed toad (hap2 2023)[IGV] Gastrophryne carolinensis GCA_027917415.1_aGasCar1.hap2 SAMN31805274 PRJNA916749 2023-01-18
55 eastern narrow-mouthed toad (primary haplotype 2023)[IGV] Gastrophryne carolinensis GCA_027917425.1_aGasCar1.pri SAMN31805274 PRJNA916748 2023-01-18
56 elephant shark (2021)[IGV] Callorhinchus milii GCF_018977255.1_IMCB_Cmil_1.0 SAMN12905446 PRJNA575613 2021-06-21
57 epaulette shark (alternate hap sHemOce1 2021)[IGV] Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon SAMN22550098 PRJNA774309 2021-11-05
58 epaulette shark (primary hap 2021 refseq)[IGV] Hemiscyllium ocellatum GCF_020745735.1_sHemOce1.pat.X.cur. SAMN22550098 PRJNA774310 2021-11-05
59 European common frog (2021)[IGV] Rana temporaria GCF_905171775.1_aRanTem1.1 SAMEA7521635 PRJEB42171 2021-01-28
60 European conger (primary hap 2023 refseq)[IGV] Conger conger GCF_963514075.1_fConCon1.1 SAMEA12219431 PRJEB66426 2023-09-29
61 European eel (alternate hap 2020)[IGV] Anguilla anguilla GCA_013347865.1_fAngAng1.alt SAMN12623627 PRJNA561984 2020-06-12
62 European eel (primary hap 2020 refseq)[IGV] Anguilla anguilla GCF_013347855.1_fAngAng1.pri SAMN12623627 PRJNA561979 2020-06-18
63 European leaf-toed gecko (hap1 2023)[IGV] Euleptes europaea GCF_029931775.1_rEulEur1.hap1 SAMN32622440 PRJNA919166 2023-05-15
64 European leaf-toed gecko (hap2 2023)[IGV] Euleptes europaea GCA_029931755.1_rEulEur1.hap2 SAMN32622440 PRJNA919167 2023-05-03
65 European pond turtle (hap1 rEmyOrb1 2023)[IGV] Emys orbicularis GCA_028017835.1_rEmyOrb1.hap1 SAMN31805221 PRJNA919152 2023-01-30
66 European pond turtle (hap2 rEmyOrb1 2023)[IGV] Emys orbicularis GCA_028017845.1_rEmyOrb1.hap2 SAMN31805221 PRJNA919101 2023-01-26
67 Far Eastern brook lamprey (LAM-NWPU_2019-01 2020)[IGV] Lethenteron reissneri GCF_015708825.1_ASM1570882v1 SAMN12436412 PRJNA558325 2020-12-01
68 fence lizard[IGV] Sceloporus undulatus GCF_019175285.1_SceUnd_v1.1 SAMN14373011 PRJNA612440 2021-07-08
69 fire-bellied toad (alternate hap 2023)[IGV] Bombina bombina GCA_027579415.1_aBomBom1.alt SAMN32378350 PRJNA915413 2023-01-06
70 fire-bellied toad (primary hap 2023 refseq)[IGV] Bombina bombina GCF_027579735.1_aBomBom1.pri SAMN32378350 PRJNA915412 2023-01-09
71 Fleay's barred frog (hap1 2024)[IGV] Mixophyes fleayi GCA_038048845.1_aMixFle1.hap1 SAMN39657083 PRJNA1071269 2024-04-17
72 Fleay's barred frog (hap2 2024)[IGV] Mixophyes fleayi GCA_038048865.1_aMixFle1.hap2 SAMN39657083 PRJNA1071268 2024-04-17
73 Florida worm lizard (hap1 rRhiFlo1 2023)[IGV] Rhineura floridana GCA_030035715.1_rRhiFlo1.hap1 SAMN34105704 PRJNA953089 2023-05-16
74 Florida worm lizard (hap2 2023)[IGV] Rhineura floridana GCF_030035675.1_rRhiFlo1.hap2 SAMN34105704 PRJNA953090 2023-05-22
75 Florida worm lizard (hap2 rRhiFlo1 2023)[IGV] Rhineura floridana GCA_030035675.1_rRhiFlo1.hap2 SAMN34105704 PRJNA953090 2023-05-22
76 Gaboon caecilian (alternate hap 2019)[IGV] Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype SAMEA104387963 PRJEB33991 2019-08-18
77 Gaboon caecilian (v1.2 2021 genbank)[IGV] Geotrypetes seraphini GCA_902459505.2_aGeoSer1.2 SAMEA104387963 PRJEB33992 2021-04-24
78 gharial (Ggan-Ray 2016)[IGV] Gavialis gangeticus GCF_001723915.1_GavGan_comp1 SAMN03102901 PRJNA172383 2016-09-13
79 gharial (hap1 2023)[IGV] Gavialis gangeticus GCA_030020385.1_rGavGan2.hap1 SAMN34116453 PRJNA953441 2023-05-16
80 gharial (hap2 2023)[IGV] Gavialis gangeticus GCA_030020295.1_rGavGan2.hap2 SAMN34116453 PRJNA953442 2023-05-22
81 giant manta (hap1 2023)[IGV] Mobula birostris GCA_030028105.1_sMobBir1.hap1 SAMN32746370 PRJNA924117 2023-05-22
82 giant manta (hap2 2023)[IGV] Mobula birostris GCA_030035685.1_sMobBir1.hap2 SAMN32746370 PRJNA924118 2023-05-22
83 Goodes thornscrub tortoise (Sinaloan 2019)[IGV] Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p SAMN03496275 PRJNA489103 2019-07-25
84 Goodes thornscrub tortoise (Sinaloan alternate hap 2019)[IGV] Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt SAMN03496275 PRJNA489104 2019-07-24
85 gopher snake (HBS135680 alternate hap 2023)[IGV] Pituophis catenifer annectens GCA_029215685.1_rPitCat1.0.hap2 SAMN33386007 PRJNA937313 2023-03-14
86 gopher snake (HBS135680 primary hap 2023)[IGV] Pituophis catenifer annectens GCA_029215655.1_rPitCat1.0.hap1 SAMN33386007 PRJNA937314 2023-03-14
87 graceful crag lizard (Gifberg primary hap 2022)[IGV] Hemicordylus capensis GCF_027244095.1_rHemCap1.1.pri SAMN31669488 PRJNA899811 2022-12-28
88 Grand Cayman blue iguana (hap1 2023)[IGV] Cyclura pinguis GCA_030412105.1_rCycPin1.hap1 SAMN35151422 PRJNA973807 2023-07-05
89 Grand Cayman blue iguana (hap2 2023)[IGV] Cyclura pinguis GCA_030412085.1_rCycPin1.hap2 SAMN35151422 PRJNA973804 2023-07-05
90 gray bichir[IGV] Polypterus senegalus GCF_016835505.1_ASM1683550v1 SAMN13737739 PRJNA599026 2021-02-09
91 great white shark (alternate hap 2021)[IGV] Carcharodon carcharias GCA_017639455.1_sCarCar2.alt SAMN12629504 PRJNA562008 2021-03-30
92 great white shark (primary hap 2021)[IGV] Carcharodon carcharias GCF_017639515.1_sCarCar2.pri SAMN12629504 PRJNA562007 2021-03-30
93 green anole (JA03-04 2024)[IGV] Anolis carolinensis GCF_035594765.1_rAnoCar3.1.pri SAMN37993897 PRJNA1032920 2024-01-12
94 green anole (v1 2011)[IGV] Anolis carolinensis GCF_000090745.1_AnoCar2.0 SAMN02981230 PRJNA18787 2011-01-10
95 green anole (v2 2010)[IGV] Anolis carolinensis GCF_000090745.2_AnoCar2.0 SAMN02981230 PRJNA18787 2010-05-17
96 green sea turtle (v2 alternate hap 2021)[IGV] Chelonia mydas GCA_015220195.2_rCheMyd1.alt.v2 SAMN12612360 PRJNA561942 2021-07-15
97 green sea turtle (v2 primary hap 2021)[IGV] Chelonia mydas GCF_015237465.2_rCheMyd1.pri.v2 SAMN12612360 PRJNA561941 2021-07-15
98 High Himalaya frog[IGV] Nanorana parkeri GCF_000935625.1_ASM93562v1 SAMN02720813 PRJNA243398 2015-03-17
99 horn shark (hap1 2024)[IGV] Heterodontus francisci GCA_036365525.1_sHetFra1.hap1 SAMN39432692 PRJNA1064416 2024-02-06
100 horn shark (hap2 2024)[IGV] Heterodontus francisci GCA_036365495.1_sHetFra1.hap2 SAMN39432692 PRJNA1064417 2024-02-06
101 hourglass treefrog (maternal 2023)[IGV] Dendropsophus ebraccatus GCA_027789725.1_aDenEbr1.mat SAMN32145295 PRJNA910818 2023-01-13
102 hourglass treefrog (paternal 2023)[IGV] Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat SAMN32145295 PRJNA910819 2023-01-13
103 Iberian parsley frog (aPelIbe1 2024)[IGV] Pelodytes ibericus GCA_036172795.1_aPelIbe1.pri SAMN37110875 PRJNA1008780 2024-01-26
104 Iberian ribbed newt (20211129_DDA 2022)[IGV] Pleurodeles waltl GCA_026652325.1_ASM2665232v1 SAMN28911188 PRJNA847026 2022-12-05
105 Indian cobra (NN01 2019)[IGV] Naja naja GCA_009733165.1_Nana_v5 SAMN11155092 PRJNA527614 2019-12-11
106 Indo-Pacific tarpon (alternate hap 2020)[IGV] Megalops cyprinoides GCA_013368575.1_fMegCyp1.alt SAMN12623619 PRJNA561968 2020-06-23
107 Komodo dragon (SLA01 2019)[IGV] Varanus komodoensis GCF_004798865.1_ASM479886v1 SAMN10967258 PRJNA523222 2019-04-17
108 Lataste's viper (alternate hap 2022)[IGV] Vipera latastei GCA_024294605.1_rVipLat1.alt SAMN28408464 PRJNA838199 2022-07-16
109 Lataste's viper (primary hap 2022)[IGV] Vipera latastei GCA_024294585.1_rVipLat1.pri SAMN28408464 PRJNA838200 2022-07-20
110 leatherback sea turtle (v2 alternate hap 2020)[IGV] Dermochelys coriacea GCA_009762595.2_rDerCor1.alt.v2 SAMN12629498 PRJNA561994 2020-12-08
111 leatherback sea turtle (v4 primary hap 2021 refseq G10K)[IGV] Dermochelys coriacea GCF_009764565.3_rDerCor1.pri.v4 SAMN12629498 PRJNA561993 2021-08-25
112 leopard gecko (TG4126 2023)[IGV] Eublepharis macularius GCF_028583425.1_MPM_Emac_v1.0 SAMN31016422 PRJNA884264 2023-02-10
113 lesser devil ray (2024)[IGV] Mobula hypostoma GCF_963921235.1_sMobHyp1.1 SAMEA115045128 PRJEB71673 2024-01-06
114 Lilford's wall lizard (2023)[IGV] Podarcis lilfordi GCA_947686815.1_rPodLil1.2 SAMEA112254106 PRJEB47961 2023-08-09
115 little skate (New England 2023)[IGV] Leucoraja erinacea GCF_028641065.1_Leri_hhj_1 SAMN23457310 PRJNA783899 2023-02-22
116 lizards E.multicarinata webbii (San Diego HBS135686 primary hap 2024)[IGV] Elgaria multicarinata webbii GCF_023053635.1_rElgMul1.1.pri SAMN25872353 PRJNA810483 2024-01-04
117 loggerhead turtle (SJ_126:Eziel1 2022)[IGV] Caretta caretta GCF_023653815.1_GSC_CCare_1.0 SAMN27958248 PRJNA826225 2022-06-07
118 mainland tiger snake[IGV] Notechis scutatus GCF_900518725.1_TS10Xv2-PRI SAMEA4800209 PRJEB27871 2018-09-24
119 many-banded krait (BM01 2022)[IGV] Bungarus multicinctus GCA_023653725.1_ASM2365372v1 SAMN17010494 PRJNA682532 2022-06-07
120 marbled whiptail (SIMRID8450 2020)[IGV] Aspidoscelis marmoratus GCA_014337955.1_AspMar1.0 SAMN06204250 PRJNA360150 2020-08-31
121 meadow viper (alternate hap 2022)[IGV] Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype SAMEA12832258 PRJEB57182 2022-10-30
122 meadow viper (primary hap 2022)[IGV] Vipera ursinii GCA_947247035.1_rVipUrs1.1 SAMEA12832258 PRJEB57183 2022-10-30
123 Mexican burrowing toad (hap1 2024)[IGV] Rhinophrynus dorsalis GCA_037306005.1_aRhiDor1.hap1 SAMN40302865 PRJNA1085474 2024-03-20
124 Mexican burrowing toad (hap2 2024)[IGV] Rhinophrynus dorsalis GCA_037306015.1_aRhiDor1.hap2 SAMN40302865 PRJNA1085475 2024-03-20
125 Mexican gopher tortoise (WGS:JAMKFC01 2022)[IGV] Gopherus flavomarginatus GCF_025201925.1_rGopFla2.mat.asm SAMN24199108 PRJNA794188 2022-09-15
126 Mexican gopher tortoise (WGS:JAMKFD01 2022)[IGV] Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm SAMN24199108 PRJNA794189 2022-09-08
127 mimic poison frog (primary hap 2023)[IGV] Ranitomeya imitator GCA_032444005.1_aRanImi1.pri SAMN32907850 PRJNA1013386 2023-10-16
128 Mississippi paddlefish[IGV] Polyodon spathula GCF_017654505.1_ASM1765450v1 SAMN09842169 PRJNA484687 2021-03-31
129 Northern rubber boa (HBS 135849 alternate hap 2022)[IGV] Charina bottae GCA_023362785.1_rChaBot1.0.a SAMN26367999 PRJNA824888 2022-05-13
130 Northern rubber boa (HBS 135849 primary hap 2022)[IGV] Charina bottae GCA_023362775.1_rChaBot1.0.p SAMN26367999 PRJNA824889 2022-05-13
131 Northwestern pond turtle (WTP2003 alternate hap 2022)[IGV] Actinemys marmorata GCA_022086895.1_rActMar1.a SAMN21436765 PRJNA778209 2022-02-08
132 Northwestern pond turtle (WTP2003 primary hap 2022)[IGV] Actinemys marmorata GCA_022086475.1_rActMar1.p SAMN21436765 PRJNA778210 2022-02-09
133 olive python (hap1 2023)[IGV] Liasis olivaceus GCA_030867105.1_rLiaOli1.hap1 SAMN32739907 PRJNA923812 2023-08-24
134 olive python (hap2 2023)[IGV] Liasis olivaceus GCA_030867085.1_rLiaOli1.hap2 SAMN32739907 PRJNA923813 2023-08-24
135 one-colored caecilian (2021)[IGV] Microcaecilia unicolor GCA_901765095.2_aMicUni1.2 SAMEA104387962 PRJEB32737 2021-04-24
136 painted frog (alternate hap 2022)[IGV] Discoglossus pictus GCA_027410455.1_aDisPic1.alt SAMN32227109 PRJNA912128 2022-12-27
137 painted frog (primary hap 2022)[IGV] Discoglossus pictus GCA_027410445.1_aDisPic1.pri SAMN32227109 PRJNA912129 2022-12-28
138 Papuan ground boa (hap1 2024)[IGV] Candoia aspera GCA_035125265.1_rCanAsp1.hap1 SAMN37159891 PRJNA1009781 2024-01-05
139 Papuan ground boa (hap2 2024)[IGV] Candoia aspera GCA_035149785.1_rCanAsp1.hap2 SAMN37159891 PRJNA1009782 2024-01-18
140 Peter's clawed frog (aXenPet1 2024)[IGV] Xenopus petersii GCA_038501915.1_aXenPet1.maternal.cur SAMN39187339 PRJNA1058703 2024-04-29
141 Peter's clawed frog (aXenPet1 2024)[IGV] Xenopus petersii GCA_038501925.1_aXenPet1.paternal.cur SAMN39187339 PRJNA1058702 2024-04-29
142 pitted-shelled turtle (YL-2023 2023)[IGV] Carettochelys insculpta GCA_033958435.1_ASM3395843v1 SAMN38222597 PRJNA1037723 2023-11-27
143 plains spadefoot toad (alternate hap 2022)[IGV] Spea bombifrons GCA_027382365.2_aSpeBom1.2.alt SAMN28408467 PRJNA838346 2022-12-27
144 plains spadefoot toad (primary hap 2022)[IGV] Spea bombifrons GCF_027358695.1_aSpeBom1.2.pri SAMN28408467 PRJNA838345 2022-12-27
145 prickly gecko (False Entrance Well CCM8104 2023)[IGV] Heteronotia binoei GCF_032191835.1_APGP_CSIRO_Hbin_v1 SAMN37280769 PRJNA1013038 2023-09-29
146 Puerto Rican coqui (hap1 2024)[IGV] Eleutherodactylus coqui GCA_035609145.1_aEleCoq1.hap1 SAMN39150572 PRJNA1057919 2024-01-12
147 Puerto Rican coqui (hap2 2024)[IGV] Eleutherodactylus coqui GCA_035609135.1_aEleCoq1.hap2 SAMN39150572 PRJNA1057918 2024-01-12
148 red-eared slider turtle[IGV] Trachemys scripta elegans GCF_013100865.1_CAS_Tse_1.0 SAMN12189062 PRJNA552319 2020-05-15
149 reedfish (alternate hap 2021)[IGV] Erpetoichthys calabaricus GCA_900700845.3_fErpCal1.3_alternate_haplotype SAMEA104026374 PRJEB31582 2021-07-07
150 Reeves's turtle[IGV] Mauremys reevesii GCF_016161935.1_ASM1616193v1 SAMN16454374 PRJNA663192 2020-12-22
151 Ringneck snake (HBS135679 primary hap 2022)[IGV] Diadophis punctatus similis GCA_023053685.1_rDiaPun1.0.p SAMN25872410 PRJNA810488 2022-04-19
152 royal ground snake (hap1 2023)[IGV] Erythrolamprus reginae GCA_031021105.1_rEryReg1.hap1 SAMN32631248 PRJNA921730 2023-08-31
153 royal ground snake (hap2 2023)[IGV] Erythrolamprus reginae GCA_031021085.1_rEryReg1.hap2 SAMN32631248 PRJNA921729 2023-08-30
154 royal ground snake (hap3 2023)[IGV] Erythrolamprus reginae GCA_031001685.1_rEryReg1.hap3 SAMN32631248 PRJNA996865 2023-08-30
155 rufous frog (hap1 2023)[IGV] Leptodactylus fuscus GCA_031893025.1_aLepFus1.hap1 SAMN37055805 PRJNA1007263 2023-09-26
156 rufous frog (hap2 2023)[IGV] Leptodactylus fuscus GCA_031893055.1_aLepFus1.hap2 SAMN37055805 PRJNA1007264 2023-09-26
157 San Diegan legless lizard (HBS135921 alternate hap 2023)[IGV] Anniella stebbinsi GCA_029215795.1_rAnnSte1.0.hap2 SAMN33386066 PRJNA938518 2023-03-14
158 San Diegan legless lizard (HBS135921 primary hap 2023)[IGV] Anniella stebbinsi GCA_029215775.1_rAnnSte1.0.hap1 SAMN33386066 PRJNA938519 2023-03-14
159 San Diegan tiger whiptail (alternate hap HBS 135688 2022)[IGV] Aspidoscelis tigris stejnegeri GCA_023333555.1_rAspTig1.0.a SAMN25872408 PRJNA810477 2022-05-11
160 San Diegan tiger whiptail (HBS 135688 2022)[IGV] Aspidoscelis tigris stejnegeri GCA_023333525.1_rAspTig1.0.p SAMN25872408 PRJNA810478 2022-05-11
161 San Diego alligator lizard (HBS135686 alternate hap 2022)[IGV] Elgaria multicarinata webbii GCA_023053675.1_rElgMul1.0.a SAMN25872353 PRJNA810482 2022-04-19
162 San Diego alligator lizard (HBS135686 primary hap 2022)[IGV] Elgaria multicarinata webbii GCA_023053635.1_rElgMul1.0.p SAMN25872353 PRJNA810483 2022-04-19
163 San Diego ringneck snake (HBS135679 alternate hap 2022)[IGV] Diadophis punctatus similis GCA_023053665.1_rDiaPun1.0.a SAMN25872410 PRJNA810487 2022-04-19
164 sand lizard (alternate hap 2019)[IGV] Lacerta agilis GCA_009819545.1_rLacAgi1.alt SAMN12629509 PRJNA562019 2019-12-23
165 sand lizard (primary hap 2019)[IGV] Lacerta agilis GCF_009819535.1_rLacAgi1.pri SAMN12629509 PRJNA562018 2019-12-31
166 Sardinian treefrog (hap1 2023 refseq)[IGV] Hyla sarda GCF_029499605.1_aHylSar1.hap1 SAMN32629340 PRJNA921707 2023-04-07
167 Sardinian treefrog (hap2 2023)[IGV] Hyla sarda GCA_029493135.1_aHylSar1.hap2 SAMN32629340 PRJNA921708 2023-03-30
168 Schlegel's Japanese gecko[IGV] Gekko japonicus GCF_001447785.1_Gekko_japonicus_V1.1 SAMN04157958 PRJNA298277 2015-11-25
169 sea lamprey (alternate hap 2020)[IGV] Petromyzon marinus GCA_010993595.1_kPetMar1.alt SAMN12629506 PRJNA562012 2020-02-24
170 sea lamprey (primary hap 2020)[IGV] Petromyzon marinus GCF_010993605.1_kPetMar1.pri SAMN12629506 PRJNA562011 2020-02-24
171 sharpnose sevengill shark (hap1 2024)[IGV] Heptranchias perlo GCA_035084215.1_sHepPer1.hap1 SAMN38891902 PRJNA1054128 2024-01-05
172 sharpnose sevengill shark (hap2 2024)[IGV] Heptranchias perlo GCA_035084135.1_sHepPer1.hap2 SAMN38891902 PRJNA1054129 2024-01-04
173 smaller spotted catshark (alternate hap 2021)[IGV] Scyliorhinus canicula GCA_902713625.2_sScyCan1.2_alternate_haplotype SAMEA994730 PRJEB35944 2021-01-28
174 smaller spotted catshark (v1.2 primary hap 2021 genbank)[IGV] Scyliorhinus canicula GCA_902713615.2_sScyCan1.2 SAMEA994730 PRJEB35945 2021-01-28
175 smalltooth sawfish (alternate hap 2019)[IGV] Pristis pectinata GCA_009764485.1_sPriPec2.alt SAMN12629505 PRJNA562010 2019-12-18
176 smalltooth sawfish (primary hap 2019 refseq)[IGV] Pristis pectinata GCF_009764475.1_sPriPec2.1.pri SAMN12629505 PRJNA562009 2019-12-19
177 snake C.aspera (hap2 2024)[IGV] Candoia aspera GCF_035149785.1_rCanAsp1.hap2 SAMN37159891 PRJNA1009782 2024-01-18
178 Southern alligator lizard (San Diego HBS135686 primary hap 2024)[IGV] Elgaria multicarinata webbii GCA_023053635.2_rElgMul1.1.pri SAMN25872353 PRJNA810483 2024-01-04
179 Southern Pacific rattlesnake (HBS135844 alternate hap 2022)[IGV] Crotalus helleri GCA_024509165.1_rCroOre1.a SAMN25872349 PRJNA807341 2022-08-03
180 Southern Pacific rattlesnake (HBS135844 primary hap 2022)[IGV] Crotalus helleri GCA_024509115.1_rCroOre1.0.p SAMN25872349 PRJNA807342 2022-08-04
181 Southwestern pond turtle (HBS135687 alternate hap 2022)[IGV] Actinemys pallida GCA_023634275.1_rActPal1.0.a SAMN25872472 PRJNA810503 2022-06-01
182 Southwestern pond turtle (HBS135687 primary hap 2022)[IGV] Actinemys pallida GCA_023634205.1_rActPal1.0.p SAMN25872472 PRJNA810504 2022-06-01
183 spotted gar[IGV] Lepisosteus oculatus GCF_000242695.1_LepOcu1 SAMN00706774 PRJNA68247 2012-01-13
184 spotted ratfish (hap1 2024)[IGV] Hydrolagus colliei GCA_035084065.1_sHydCol1.hap1 SAMN39156054 PRJNA1058004 2024-01-05
185 spotted ratfish (hap2 2024)[IGV] Hydrolagus colliei GCA_035084275.1_sHydCol1.hap2 SAMN39156054 PRJNA1058005 2024-01-05
186 sterlet (maternal hap 2022 refseq)[IGV] Acipenser ruthenus GCF_902713425.1_fAciRut3.2_maternal_haplotype SAMEA5572864 PRJEB35912 2022-02-02
187 sterlet (paternal fAciRut3.2 2022)[IGV] Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype SAMEA5572864 PRJEB35913 2022-02-01
188 sterlet (v2 Gen_M01 2020)[IGV] Acipenser ruthenus GCF_010645085.2_ASM1064508v2 SAMN12612932 PRJNA561280 2020-02-19
189 Suwannee snapping turtle (hap1 2023)[IGV] Macrochelys suwanniensis GCA_033296515.1_rMacSuw1.hap1 SAMN37052244 PRJNA1006848 2023-11-06
190 Suwannee snapping turtle (hap2 2023)[IGV] Macrochelys suwanniensis GCA_033349115.1_rMacSuw1.hap2 SAMN37052244 PRJNA1006849 2023-11-06
191 thorny skate (alternate hap CabotCenter1 2020)[IGV] Amblyraja radiata GCA_010909745.1_sAmbRad1.alt SAMN09948523 PRJNA591368 2020-02-14
192 thorny skate (primary hap CabotCenter1 v1.1 2020)[IGV] Amblyraja radiata GCF_010909765.2_sAmbRad1.1.pri SAMN09948523 PRJNA591369 2020-02-21
193 three-toed box turtle[IGV] Terrapene triunguis GCF_002925995.2_T_m_triunguis-2.0 SAMN08285364 PRJNA415469 2018-09-21
194 tiger rattlesnake[IGV] Crotalus tigris GCF_016545835.1_ASM1654583v1 SAMN12497667 PRJNA558767 2021-01-06
195 tiny Cayenne caecilian[IGV] Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 SAMEA104387962 PRJEB32737 2019-06-22
196 tiny Cayenne caecilian (alternate hap 2019)[IGV] Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype SAMEA104387962 PRJEB32738 2019-07-08
197 Townsend's dwarf sphaero (gecko TG3544 2022)[IGV] Sphaerodactylus townsendi GCF_021028975.2_MPM_Stown_v2.3 SAMN20179316 PRJNA746057 2022-04-08
198 tropical clawed frog[IGV] Xenopus tropicalis GCF_000004195.4_UCB_Xtro_10.0 SAMN13041969 PRJNA577946 2019-11-14
199 two-lined caecilian (alternate hap 2019)[IGV] Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype SAMEA104387956 PRJEB32112 2019-06-02
200 two-lined caecilian (v1.2 2021 genbank)[IGV] Rhinatrema bivittatum GCA_901001135.2_aRhiBiv1.2 SAMEA104387956 PRJEB32111 2021-04-24
201 valley gartersnake (HBS 135685 alternate hap 2023)[IGV] Thamnophis sirtalis fitchi GCA_029207655.1_rThaSir1.0.hap2 SAMN26367981 PRJNA913137 2023-03-14
202 valley gartersnake (HBS 135685 primary hap 2023)[IGV] Thamnophis sirtalis fitchi GCA_029207665.1_rThaSir1.0.hap1 SAMN26367981 PRJNA913138 2023-03-14
203 viviparous/common lizard[IGV] Zootoca vivipara GCF_011800845.1_UG_Zviv_1 SAMN14329711 PRJNA610958 2020-04-01
204 West African lungfish[IGV] Protopterus annectens GCF_019279795.1_PAN1.0 SAMN17890435 PRJNA701604 2021-07-20
205 western fence lizard (IW3139 2022)[IGV] Sceloporus occidentalis GCA_023333635.1_rSceOcc1.0.a SAMN27480378 PRJNA824882 2022-05-11
206 western fence lizard (IW3139 primary hap 2022)[IGV] Sceloporus occidentalis GCA_023333645.1_rSceOcc1.0.p SAMN27480378 PRJNA824883 2022-05-11
207 western painted turtle (v5 RCT428 2020)[IGV] Chrysemys picta bellii GCF_000241765.5_Chrysemys_picta_BioNano-3.0.4 SAMN02713681 PRJNA78657 2020-08-21
208 western red-tailed skink (HBS 135693 alternate hap 2022)[IGV] Plestiodon gilberti rubricaudatus GCA_026170595.1_rPleGil1.0.hap2 SAMN30523592 PRJNA874060 2022-11-14
209 western red-tailed skink (HBS 135693 primary hap 2022)[IGV] Plestiodon gilberti rubricaudatus GCA_026170395.1_rPleGil1.0.hap1 SAMN30523592 PRJNA874061 2022-11-14
210 western spadefoot toad (hap1 HBS 135690 2023)[IGV] Spea hammondii GCA_029215705.1_aSpeHam1.0.hap1 SAMN33386125 PRJNA938521 2023-03-15
211 western spadefoot toad (hap2 HBS 135690 2023)[IGV] Spea hammondii GCA_029215755.1_aSpeHam1.0.hap2 SAMN33386125 PRJNA938520 2023-03-14
212 western terrestrial garter snake (alternate hap 2019)[IGV] Thamnophis elegans GCA_009769695.1_rThaEle1.alt SAMN12629499 PRJNA561997 2019-12-19
213 western terrestrial garter snake (primary hap 2019)[IGV] Thamnophis elegans GCF_009769535.1_rThaEle1.pri SAMN12629499 PRJNA561996 2019-12-23
214 whale shark (14 2022 Squalomix)[IGV] Rhincodon typus GCF_021869965.1_sRhiTyp1.1 SAMN19519256 PRJNA703743 2022-02-03
215 whale shark (Ralph 2017 Emory U)[IGV] Rhincodon typus GCF_001642345.1_ASM164234v2 SAMN04562461 PRJNA255419 2017-03-03
216 whitespotted bambooshark[IGV] Chiloscyllium plagiosum GCF_004010195.1_ASM401019v2 SAMN09508879 PRJNA478295 2019-01-10
217 yellowpond turtle (Southern MM-2020 2021)[IGV] Mauremys mutica GCF_020497125.1_ASM2049712v1 SAMN19136605 PRJNA729638 2021-10-14
218 zebra shark (6-17 2022 Squalomix)[IGV] Stegostoma tigrinum GCF_022316705.1_sSteFas1.1 SAMN18022887 PRJNA703743 2022-02-17
219 zebra shark (hap1 2023 refseq)[IGV] Stegostoma tigrinum GCF_030684315.1_sSteTig4.hap1 SAMN35823397 PRJNA986595 2023-08-08
220 zebra shark (hap2 2023)[IGV] Stegostoma tigrinum GCA_030684295.1_sSteTig4.hap2 SAMN35823397 PRJNA986594 2023-08-07

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 214 assemblies assembly stats track stats
Mammals 533 assemblies assembly stats track stats
Birds 353 assemblies assembly stats track stats
Fishes 387 assemblies assembly stats track stats
other vertebrates 220 assemblies assembly stats track stats
Invertebrates 698 assemblies assembly stats track stats
Plants 296 assemblies assembly stats track stats
Fungi 648 assemblies assembly stats track stats
Viruses 281 assemblies assembly stats track stats
Bacteria 96 assemblies assembly stats track stats
legacy/superseded 442 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 865 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats