1 |
Abingdon island giant tortoise |
Chelonoidis abingdonii |
GCF_003597395.1_ASM359739v1 |
SAMN07840320 |
PRJNA416050 |
2018-09-25 |
2 |
Aeolian wall lizard (rPodRaf1 primary hap 2022) |
Podarcis raffonei |
GCF_027172205.1_rPodRaf1.pri |
SAMN28455423 |
PRJNA839511 |
2022-12-27 |
3 |
African clawed frog (2021) |
Xenopus laevis |
GCF_017654675.1_Xenopus_laevis_v10.1 |
SAMN18035302 |
PRJNA313213 |
2021-04-12 |
4 |
American alligator |
Alligator mississippiensis |
GCF_000281125.3_ASM28112v4 |
SAMN02981418 |
PRJNA159843 |
2016-03-28 |
5 |
Asiatic toad (SCDJY-AF-19 2020) |
Bufo gargarizans |
GCF_014858855.1_ASM1485885v1 |
SAMN14734018 |
PRJNA628553 |
2020-10-21 |
6 |
Australian saltwater crocodile |
Crocodylus porosus |
GCF_001723895.1_CroPor_comp1 |
SAMN03102602 |
PRJNA163131 |
2016-09-13 |
7 |
Blainville's horned lizard (primary hap 2022) |
Phrynosoma blainvillii |
GCA_026167985.1_rPhrBla1.0.hap1 |
SAMN29046554 |
PRJNA873122 |
2022-11-14 |
8 |
Blainville's horned lizard (alternate hap 2022) |
Phrynosoma blainvillii |
GCA_026167975.1_rPhrBla1.0.hap2 |
SAMN29046554 |
PRJNA873121 |
2022-11-14 |
9 |
brown spotted pit viper |
Protobothrops mucrosquamatus |
GCF_001527695.2_P.Mucros_1.0 |
SAMD00043515 |
PRJDB4386 |
2016-01-22 |
10 |
Burmese python |
Python bivittatus |
GCF_000186305.1_Python_molurus_bivittatus-5.0.2 |
SAMN02981298 |
PRJNA61243 |
2013-09-15 |
11 |
California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022) |
Arizona elegans |
GCA_022578425.1_rAriEle1.0.a |
SAMN24818160 |
PRJNA796780 |
2022-03-15 |
12 |
California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022) |
Arizona elegans |
GCA_022577455.1_rAriEle1.0.p |
SAMN24818160 |
PRJNA796781 |
2022-03-15 |
13 |
central bearded dragon |
Pogona vitticeps |
GCF_900067755.1_pvi1.1 |
SAMEA2300447 |
PRJEB5206 |
2017-02-28 |
14 |
Chinese alligator |
Alligator sinensis |
GCF_000455745.1_ASM45574v1 |
SAMN02981559 |
PRJNA215016 |
2013-08-29 |
15 |
Chinese soft-shelled turtle |
Pelodiscus sinensis |
GCF_000230535.1_PelSin_1.0 |
SAMN02981371 |
PRJNA68233 |
2012-07-24 |
16 |
coelacanth |
Latimeria chalumnae |
GCF_000225785.1_LatCha1 |
SAMN00138723 |
PRJNA56111 |
2011-09-12 |
17 |
common garter snake |
Thamnophis sirtalis |
GCF_001077635.1_Thamnophis_sirtalis-6.0 |
SAMN03759628 |
PRJNA189551 |
2015-06-26 |
18 |
common wall lizard |
Podarcis muralis |
GCF_004329235.1_PodMur_1.0 |
SAMN10820182 |
PRJNA515813 |
2019-03-07 |
19 |
common toad |
Bufo bufo |
GCF_905171765.1_aBufBuf1.1 |
SAMEA7521636 |
PRJEB42168 |
2021-01-28 |
20 |
corn snake |
Pantherophis guttatus |
GCF_001185365.1_UNIGE_PanGut_3.0 |
SAMN12106767 |
PRJNA268069 |
2020-04-13 |
21 |
diamondback terrapin (rMalTer1 2023) |
Malaclemys terrapin pileata |
GCF_027887155.1_rMalTer1.hap1 |
SAMN31394215 |
PRJNA895896 |
2023-01-18 |
22 |
eastern brown snake |
Pseudonaja textilis |
GCF_900518735.1_EBS10Xv2-PRI |
SAMEA4800208 |
PRJEB27869 |
2018-09-24 |
23 |
elephant shark (2021) |
Callorhinchus milii |
GCF_018977255.1_IMCB_Cmil_1.0 |
SAMN12905446 |
PRJNA575613 |
2021-06-21 |
24 |
epaulette shark (sHemOce1 2021) |
Hemiscyllium ocellatum |
GCA_020745735.1_sHemOce1.pat.X.cur. |
SAMN22550098 |
PRJNA774310 |
2021-11-05 |
25 |
epaulette shark (alternate hap sHemOce1 2021) |
Hemiscyllium ocellatum |
GCA_020745765.1_sHemOce1.mat.decon |
SAMN22550098 |
PRJNA774309 |
2021-11-05 |
26 |
European common frog |
Rana temporaria |
GCF_905171775.1_aRanTem1.1 |
SAMEA7521635 |
PRJEB42171 |
2021-01-28 |
27 |
European eel (primary hap 2020) |
Anguilla anguilla |
GCF_013347855.1_fAngAng1.pri |
SAMN12623627 |
PRJNA561979 |
2020-06-18 |
28 |
fence lizard |
Sceloporus undulatus |
GCF_019175285.1_SceUnd_v1.1 |
SAMN14373011 |
PRJNA612440 |
2021-07-08 |
29 |
fire-bellied toad (aBomBom1 primary hap 2023) |
Bombina bombina |
GCF_027579735.1_aBomBom1.pri |
SAMN32378350 |
PRJNA915412 |
2023-01-09 |
30 |
Gaboon caecilian (alternate hap 2019) |
Geotrypetes seraphini |
GCA_902459495.1_aGeoSer1.1_alternate_haplotype |
SAMEA104387963 |
PRJEB33991 |
2019-08-18 |
31 |
Gaboon caecilian (2019 refseq) |
Geotrypetes seraphini |
GCF_902459505.1_aGeoSer1.1 |
SAMEA104387963 |
PRJEB33992 |
2019-08-18 |
32 |
gharial |
Gavialis gangeticus |
GCF_001723915.1_GavGan_comp1 |
SAMN03102901 |
PRJNA172383 |
2016-09-13 |
33 |
Goodes thornscrub tortoise (Sinaloan 2019) |
Gopherus evgoodei |
GCF_007399415.2_rGopEvg1_v1.p |
SAMN03496275 |
PRJNA489103 |
2019-07-25 |
34 |
Goodes thornscrub tortoise (Sinaloan alternate hap 2019) |
Gopherus evgoodei |
GCA_007399395.1_rGopEvg1_v1.alt |
SAMN03496275 |
PRJNA489104 |
2019-07-24 |
35 |
gopher snake (HBS135680 alternate hap 2023) |
Pituophis catenifer annectens |
GCA_029215685.1_rPitCat1.0.hap2 |
SAMN33386007 |
PRJNA937313 |
2023-03-14 |
36 |
gopher snake (HBS135680 primary hap 2023) |
Pituophis catenifer annectens |
GCA_029215655.1_rPitCat1.0.hap1 |
SAMN33386007 |
PRJNA937314 |
2023-03-14 |
37 |
graceful crag lizard (Gifberg primary hap 2022) |
Hemicordylus capensis |
GCF_027244095.1_rHemCap1.1.pri |
SAMN31669488 |
PRJNA899811 |
2022-12-28 |
38 |
gray bichir |
Polypterus senegalus |
GCF_016835505.1_ASM1683550v1 |
SAMN13737739 |
PRJNA599026 |
2021-02-09 |
39 |
great white shark (primary hap 2021) |
Carcharodon carcharias |
GCF_017639515.1_sCarCar2.pri |
SAMN12629504 |
PRJNA562007 |
2021-03-30 |
40 |
green anole |
Anolis carolinensis |
GCF_000090745.1_AnoCar2.0 |
SAMN02981230 |
PRJNA18787 |
2011-01-10 |
41 |
green sea turtle (v2 primary hap 2021) |
Chelonia mydas |
GCF_015237465.2_rCheMyd1.pri.v2 |
SAMN12612360 |
PRJNA561941 |
2021-07-15 |
42 |
High Himalaya frog |
Nanorana parkeri |
GCF_000935625.1_ASM93562v1 |
SAMN02720813 |
PRJNA243398 |
2015-03-17 |
43 |
Komodo dragon (SLA01 2019) |
Varanus komodoensis |
GCF_004798865.1_ASM479886v1 |
SAMN10967258 |
PRJNA523222 |
2019-04-17 |
44 |
Lataste's viper (rVipLat1 primary hap 2022) |
Vipera latastei |
GCA_024294585.1_rVipLat1.pri |
SAMN28408464 |
PRJNA838200 |
2022-07-20 |
45 |
leatherback sea turtle (v4 primary hap 2021 refseq G10K) |
Dermochelys coriacea |
GCF_009764565.3_rDerCor1.pri.v4 |
SAMN12629498 |
PRJNA561993 |
2021-08-25 |
46 |
leatherback sea turtle (alternate hap 2019) |
Dermochelys coriacea |
GCA_009762595.1_rDerCor1.alt |
SAMN12629498 |
PRJNA561994 |
2019-12-18 |
47 |
leopard gecko (TG4126 2023) |
Eublepharis macularius |
GCF_028583425.1_MPM_Emac_v1.0 |
SAMN31016422 |
PRJNA884264 |
2023-02-10 |
48 |
little skate (New England 2023) |
Leucoraja erinacea |
GCF_028641065.1_Leri_hhj_1 |
SAMN23457310 |
PRJNA783899 |
2023-02-22 |
49 |
loggerhead turtle (SJ_126:Eziel1 2022) |
Caretta caretta |
GCF_023653815.1_GSC_CCare_1.0 |
SAMN27958248 |
PRJNA826225 |
2022-06-07 |
50 |
mainland tiger snake |
Notechis scutatus |
GCF_900518725.1_TS10Xv2-PRI |
SAMEA4800209 |
PRJEB27871 |
2018-09-24 |
51 |
marbled whiptail (SIMRID8450 2020) |
Aspidoscelis marmoratus |
GCA_014337955.1_AspMar1.0 |
SAMN06204250 |
PRJNA360150 |
2020-08-31 |
52 |
meadow viper (primary hap 2022) |
Vipera ursinii |
GCA_947247035.1_rVipUrs1.1 |
SAMEA12832258 |
PRJEB57183 |
2022-10-30 |
53 |
meadow viper (alternate hap 2022) |
Vipera ursinii |
GCA_947247025.1_rVipUrs1.1_alternate_haplotype |
SAMEA12832258 |
PRJEB57182 |
2022-10-30 |
54 |
Mexican gopher tortoise (WGS:JAMKFC01 2022) |
Gopherus flavomarginatus |
GCF_025201925.1_rGopFla2.mat.asm |
SAMN24199108 |
PRJNA794188 |
2022-09-15 |
55 |
Mexican gopher tortoise (WGS:JAMKFD01 2022) |
Gopherus flavomarginatus |
GCA_025201965.1_rGopFla2.pat.asm |
SAMN24199108 |
PRJNA794189 |
2022-09-08 |
56 |
Mississippi paddlefish |
Polyodon spathula |
GCF_017654505.1_ASM1765450v1 |
SAMN09842169 |
PRJNA484687 |
2021-03-31 |
57 |
Northern rubber boa (HBS 135849 alternate hap 2022) |
Charina bottae |
GCA_023362785.1_rChaBot1.0.a |
SAMN26367999 |
PRJNA824888 |
2022-05-13 |
58 |
Northern rubber boa (HBS 135849 primary hap 2022) |
Charina bottae |
GCA_023362775.1_rChaBot1.0.p |
SAMN26367999 |
PRJNA824889 |
2022-05-13 |
59 |
Northwestern pond turtle (WTP2003 alternate hap 2022) |
Actinemys marmorata |
GCA_022086895.1_rActMar1.a |
SAMN21436765 |
PRJNA778209 |
2022-02-08 |
60 |
Northwestern pond turtle (WTP2003 primary hap 2022) |
Actinemys marmorata |
GCA_022086475.1_rActMar1.p |
SAMN21436765 |
PRJNA778210 |
2022-02-09 |
61 |
plains spadefoot toad (aSpeBom1 primary hap 2022) |
Spea bombifrons |
GCF_027358695.1_aSpeBom1.2.pri |
SAMN28408467 |
PRJNA838345 |
2022-12-27 |
62 |
red-eared slider turtle |
Trachemys scripta elegans |
GCF_013100865.1_CAS_Tse_1.0 |
SAMN12189062 |
PRJNA552319 |
2020-05-15 |
63 |
Reeves's turtle |
Mauremys reevesii |
GCF_016161935.1_ASM1616193v1 |
SAMN16454374 |
PRJNA663192 |
2020-12-22 |
64 |
Ringneck snake (HBS135679 primary hap 2022) |
Diadophis punctatus similis |
GCA_023053685.1_rDiaPun1.0.p |
SAMN25872410 |
PRJNA810488 |
2022-04-19 |
65 |
San Diegan legless lizard (HBS135921 alternate hap 2023) |
Anniella stebbinsi |
GCA_029215795.1_rAnnSte1.0.hap2 |
SAMN33386066 |
PRJNA938518 |
2023-03-14 |
66 |
San Diegan legless lizard (HBS135921 primary hap 2023) |
Anniella stebbinsi |
GCA_029215775.1_rAnnSte1.0.hap1 |
SAMN33386066 |
PRJNA938519 |
2023-03-14 |
67 |
San Diegan tiger whiptail (HBS 135688 2022) |
Aspidoscelis tigris stejnegeri |
GCA_023333525.1_rAspTig1.0.p |
SAMN25872408 |
PRJNA810478 |
2022-05-11 |
68 |
San Diegan tiger whiptail (alternate hap HBS 135688 2022) |
Aspidoscelis tigris stejnegeri |
GCA_023333555.1_rAspTig1.0.a |
SAMN25872408 |
PRJNA810477 |
2022-05-11 |
69 |
San Diego alligator lizard (HBS135686 alternate hap 2022) |
Elgaria multicarinata webbii |
GCA_023053675.1_rElgMul1.0.a |
SAMN25872353 |
PRJNA810482 |
2022-04-19 |
70 |
San Diego alligator lizard (HBS135686 primary hap 2022) |
Elgaria multicarinata webbii |
GCA_023053635.1_rElgMul1.0.p |
SAMN25872353 |
PRJNA810483 |
2022-04-19 |
71 |
San Diego ringneck snake (HBS135679 alternate hap 2022) |
Diadophis punctatus similis |
GCA_023053665.1_rDiaPun1.0.a |
SAMN25872410 |
PRJNA810487 |
2022-04-19 |
72 |
sand lizard (alternate hap 2019) |
Lacerta agilis |
GCA_009819545.1_rLacAgi1.alt |
SAMN12629509 |
PRJNA562019 |
2019-12-23 |
73 |
sand lizard (primary hap 2019) |
Lacerta agilis |
GCF_009819535.1_rLacAgi1.pri |
SAMN12629509 |
PRJNA562018 |
2019-12-31 |
74 |
Schlegel's Japanese gecko |
Gekko japonicus |
GCF_001447785.1_Gekko_japonicus_V1.1 |
SAMN04157958 |
PRJNA298277 |
2015-11-25 |
75 |
sea lamprey (alternate hap 2020) |
Petromyzon marinus |
GCA_010993595.1_kPetMar1.alt |
SAMN12629506 |
PRJNA562012 |
2020-02-24 |
76 |
sea lamprey (primary hap 2020) |
Petromyzon marinus |
GCF_010993605.1_kPetMar1.pri |
SAMN12629506 |
PRJNA562011 |
2020-02-24 |
77 |
smaller spotted catshark |
Scyliorhinus canicula |
GCF_902713615.1_sScyCan1.1 |
SAMEA994730 |
PRJEB35945 |
2020-12-17 |
78 |
smalltooth sawfish (primary hap 2019 refseq) |
Pristis pectinata |
GCF_009764475.1_sPriPec2.1.pri |
SAMN12629505 |
PRJNA562009 |
2019-12-19 |
79 |
smalltooth sawfish (alternate hap 2019) |
Pristis pectinata |
GCA_009764485.1_sPriPec2.alt |
SAMN12629505 |
PRJNA562010 |
2019-12-18 |
80 |
Southern Pacific rattlesnake (HBS135844 alternate hap 2022) |
Crotalus oreganus helleri |
GCA_024509165.1_rCroOre1.a |
SAMN25872349 |
PRJNA807341 |
2022-08-03 |
81 |
Southern Pacific rattlesnake (HBS135844 primary hap 2022) |
Crotalus oreganus helleri |
GCA_024509115.1_rCroOre1.0.p |
SAMN25872349 |
PRJNA807342 |
2022-08-04 |
82 |
Southwestern pond turtle (HBS135687 alternate hap 2022) |
Actinemys pallida |
GCA_023634275.1_rActPal1.0.a |
SAMN25872472 |
PRJNA810503 |
2022-06-01 |
83 |
Southwestern pond turtle (HBS135687 primary hap 2022) |
Actinemys pallida |
GCA_023634205.1_rActPal1.0.p |
SAMN25872472 |
PRJNA810504 |
2022-06-01 |
84 |
spotted gar |
Lepisosteus oculatus |
GCF_000242695.1_LepOcu1 |
SAMN00706774 |
PRJNA68247 |
2012-01-13 |
85 |
sterlet (fAciRut3.2 2022) |
Acipenser ruthenus |
GCA_902713435.2_fAciRut3.2_paternal_haplotype |
SAMEA5572864 |
PRJEB35913 |
2022-02-01 |
86 |
sterlet (v2 Gen_M01 2020) |
Acipenser ruthenus |
GCF_010645085.2_ASM1064508v2 |
SAMN12612932 |
PRJNA561280 |
2020-02-19 |
87 |
thorny skate (primary hap CabotCenter1 v1.1 2020) |
Amblyraja radiata |
GCF_010909765.2_sAmbRad1.1.pri |
SAMN09948523 |
PRJNA591369 |
2020-02-21 |
88 |
thorny skate (alternate hap CabotCenter1 2020) |
Amblyraja radiata |
GCA_010909745.1_sAmbRad1.alt |
SAMN09948523 |
PRJNA591368 |
2020-02-14 |
89 |
three-toed box turtle |
Terrapene carolina triunguis |
GCF_002925995.2_T_m_triunguis-2.0 |
SAMN08285364 |
PRJNA415469 |
2018-09-21 |
90 |
tiger rattlesnake |
Crotalus tigris |
GCF_016545835.1_ASM1654583v1 |
SAMN12497667 |
PRJNA558767 |
2021-01-06 |
91 |
tiny Cayenne caecilian |
Microcaecilia unicolor |
GCF_901765095.1_aMicUni1.1 |
SAMEA104387962 |
PRJEB32737 |
2019-06-22 |
92 |
tiny Cayenne caecilian (alternate hap 2019) |
Microcaecilia unicolor |
GCA_901765105.1_aMicUni1.1_alternate_haplotype |
SAMEA104387962 |
PRJEB32738 |
2019-07-08 |
93 |
Townsend's dwarf sphaero (gecko TG3544 2022) |
Sphaerodactylus townsendi |
GCF_021028975.2_MPM_Stown_v2.3 |
SAMN20179316 |
PRJNA746057 |
2022-04-08 |
94 |
tropical clawed frog |
Xenopus tropicalis |
GCF_000004195.4_UCB_Xtro_10.0 |
SAMN13041969 |
PRJNA577946 |
2019-11-14 |
95 |
two-lined caecilian (2019) |
Rhinatrema bivittatum |
GCF_901001135.1_aRhiBiv1.1 |
SAMEA104387956 |
PRJEB32111 |
2019-06-02 |
96 |
two-lined caecilian (alternate hap 2019) |
Rhinatrema bivittatum |
GCA_901001175.1_aRhiBiv1.1_alternate_haplotype |
SAMEA104387956 |
PRJEB32112 |
2019-06-02 |
97 |
valley gartersnake (HBS 135685 alternate hap 2023) |
Thamnophis sirtalis fitchi |
GCA_029207655.1_rThaSir1.0.hap2 |
SAMN26367981 |
PRJNA913137 |
2023-03-14 |
98 |
valley gartersnake (HBS 135685 primary hap 2023) |
Thamnophis sirtalis fitchi |
GCA_029207665.1_rThaSir1.0.hap1 |
SAMN26367981 |
PRJNA913138 |
2023-03-14 |
99 |
viviparous/common lizard |
Zootoca vivipara |
GCF_011800845.1_UG_Zviv_1 |
SAMN14329711 |
PRJNA610958 |
2020-04-01 |
100 |
West African lungfish |
Protopterus annectens |
GCF_019279795.1_PAN1.0 |
SAMN17890435 |
PRJNA701604 |
2021-07-20 |
101 |
western fence lizard (IW3139 2022) |
Sceloporus occidentalis |
GCA_023333635.1_rSceOcc1.0.a |
SAMN27480378 |
PRJNA824882 |
2022-05-11 |
102 |
western fence lizard (IW3139 primary hap 2022) |
Sceloporus occidentalis |
GCA_023333645.1_rSceOcc1.0.p |
SAMN27480378 |
PRJNA824883 |
2022-05-11 |
103 |
western painted turtle (v5 RCT428 2020) |
Chrysemys picta bellii |
GCF_000241765.5_Chrysemys_picta_BioNano-3.0.4 |
SAMN02713681 |
PRJNA78657 |
2020-08-21 |
104 |
western red-tailed skink (HBS 135693 alternate hap 2022) |
Plestiodon gilberti rubricaudatus |
GCA_026170595.1_rPleGil1.0.hap2 |
SAMN30523592 |
PRJNA874060 |
2022-11-14 |
105 |
western red-tailed skink (HBS 135693 primary hap 2022) |
Plestiodon gilberti rubricaudatus |
GCA_026170395.1_rPleGil1.0.hap1 |
SAMN30523592 |
PRJNA874061 |
2022-11-14 |
106 |
western spadefoot toad (HBS 135690 2023) |
Spea hammondii |
GCA_029215705.1_aSpeHam1.0.hap1 |
SAMN33386125 |
PRJNA938521 |
2023-03-15 |
107 |
western spadefoot toad (HBS 135690 2023) |
Spea hammondii |
GCA_029215755.1_aSpeHam1.0.hap2 |
SAMN33386125 |
PRJNA938520 |
2023-03-14 |
108 |
western terrestrial garter snake (alternate hap 2019) |
Thamnophis elegans |
GCA_009769695.1_rThaEle1.alt |
SAMN12629499 |
PRJNA561997 |
2019-12-19 |
109 |
western terrestrial garter snake (primary hap 2019) |
Thamnophis elegans |
GCF_009769535.1_rThaEle1.pri |
SAMN12629499 |
PRJNA561996 |
2019-12-23 |
110 |
whale shark (Ralph 2017 Emory U) |
Rhincodon typus |
GCF_001642345.1_ASM164234v2 |
SAMN04562461 |
PRJNA255419 |
2017-03-03 |
111 |
whale shark (14 2022 Squalomix) |
Rhincodon typus |
GCF_021869965.1_sRhiTyp1.1 |
SAMN19519256 |
PRJNA703743 |
2022-02-03 |
112 |
whitespotted bambooshark |
Chiloscyllium plagiosum |
GCF_004010195.1_ASM401019v2 |
SAMN09508879 |
PRJNA478295 |
2019-01-10 |
113 |
yellowpond turtle (Southern MM-2020 2021) |
Mauremys mutica |
GCF_020497125.1_ASM2049712v1 |
SAMN19136605 |
PRJNA729638 |
2021-10-14 |
114 |
zebra shark (6-17 2022 Squalomix) |
Stegostoma fasciatum |
GCF_022316705.1_sSteFas1.1 |
SAMN18022887 |
PRJNA703743 |
2022-02-17 |