Mammals Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of mammals only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 aardvark Orycteropus afer afer GCF_000298275.1_OryAfe1.0 22,509 4,444,080,527 411,144 1,028,739,906 39.08
2 African savanna elephant Loxodonta africana GCF_000001905.1_Loxafr3.0 2,352 3,196,738,102 93,514 78,195,493 56.18
3 alpaca Vicugna pacos GCF_000164845.3_VicPac3.1 77,390 2,119,617,549 166,280 88,419,281 34.29
4 Alpine marmot Marmota marmota marmota GCF_001458135.1_marMar2.1 14,543 2,510,587,379 89,362 98,898,735 31.47
5 American beaver Castor canadensis GCF_001984765.1_C.can_genome_v1.0 21,157 2,518,306,565 3,321 331,911 32.85
6 American bison Bison bison bison GCF_000754665.1_Bison_UMD1.0 128,431 2,828,031,685 341,984 195,767,988 43.19
7 American pika Ochotona princeps GCF_000292845.1_OchPri3.0 10,420 2,229,835,716 122,542 285,847,846 26.73
8 Amur tiger Panthera tigris altaica GCF_000464555.1_PanTig1.0 1,479 2,391,082,183 155,553 58,232,500 41.14
9 Arabian camel Camelus dromedarius GCF_000803125.2_CamDro3 21,070 2,169,363,382 47,342 17,043,352 33.40
10 Arctic ground squirrel Urocitellus parryii GCF_003426925.1_ASM342692v1 15,883 2,520,500,478 2,429,461 267,022,442 28.34
11 ass Equus asinus GCF_001305755.1_ASM130575v1 2,167 2,391,051,217 69,593 33,114,414 40.83
12 Bactrian camel Camelus bactrianus GCF_000767855.1_Ca_bactrianus_MBC_1.0 35,455 1,992,663,268 31,980 13,666,687 34.20
13 David's myotis bat Myotis davidii GCF_000327345.1_ASM32734v1 101,769 2,059,799,708 223,511 181,337,721 29.57
14 Natal long-fingered bat Miniopterus natalensis GCF_001595765.1_Mnat.v1 1,269 1,803,099,001 204,616 68,267,343 28.40
15 beluga whale Delphinapterus leucas GCF_002288925.2_ASM228892v3 5,905 2,362,774,659 24,414 35,865,177 42.62
16 big brown bat Eptesicus fuscus GCF_000308155.1_EptFus1.0 6,788 2,026,627,185 160,269 215,248,386 28.91
17 black flying fox Pteropus alecto GCF_000325575.1_ASM32557v1 65,598 1,985,975,446 104,566 41,333,505 32.93
18 Brandt's bat Myotis brandtii GCF_000412655.1_ASM41265v1 169,750 2,107,242,811 155,664 125,473,085 31.07
19 brown bear Ursus arctos horribilis GCF_003584765.1_ASM358476v1 6,262 2,327,475,088 17,380 16,213,257 40.61
20 California sea lion Zalophus californianus GCF_900631625.1_zalCal2.2 10,423 2,372,369,564 47,716 4,767,684 42.82
21 Canada lynx Lynx canadensis GCF_007474595.1_mLynCan4_v1.p 66 2,408,883,772 848 2,778,737 43.35
22 Cape elephant shrew Elephantulus edwardii GCF_000299155.1_EleEdw1.0 8,768 3,843,982,861 279,394 528,111,014 42.36
23 Cape golden mole Chrysochloris asiatica GCF_000296735.1_ChrAsi1.0 20,500 4,210,110,458 370,844 846,546,142 41.19
24 cattle Bos taurus GCF_002263795.1_ARS-UCD1.2 2,211 2,715,853,792 386 28,162 49.35
25 cheetah Acinonyx jubatus GCF_003709585.1_Aci_jub_2 3,220 2,384,851,327 24,173 10,703,252 42.29
26 Chinese hamster Cricetulus griseus GCF_000223135.1_CriGri_1.0 109,152 2,399,786,748 156,635 81,654,506 31.00
27 Chinese hamster Cricetulus griseus GCF_003668045.1_CriGri-PICR 1,830 2,368,906,908 4,356 2,853,013 32.76
28 Chinese tree shrew Tupaia chinensis GCF_000334495.1_TupChi_1.0 50,750 2,846,580,235 191,695 140,191,100 38.05
29 common bottlenose dolphin Tursiops truncatus GCF_001922835.1_NIST_Tur_tru_v1 2,648 2,132,516,271 114,003 12,216,051 43.28
30 common vampire bat Desmodus rotundus GCF_002940915.1_ASM294091v2 29,801 2,063,808,397 54,308 45,952,385 28.84
31 common wombat Vombatus ursinus GCF_900497805.2_bare-nosed_wombat_genome_assembly 14,183 3,483,711,260 67,461 11,418,651 41.71
32 Damara mole-rat Fukomys damarensis GCF_000743615.1_DMR_v1.0 74,730 2,333,892,479 87,815 47,907,697 30.66
33 degu Octodon degus GCF_000260255.1_OctDeg1.0 7,134 2,995,882,938 252,772 469,628,246 29.31
34 dog Canis lupus familiaris GCF_000002285.3_CanFam3.1 3,268 2,410,976,875 23,876 18,261,639 42.61
35 domestic cat Felis catus GCF_000181335.3_Felis_catus_9.0 4,508 2,521,863,845 436 45,410,675 42.42
36 domestic ferret Mustela putorius furo GCF_000215625.1_MusPutFur1.0 7,742 2,410,774,536 109,700 132,851,443 37.00
37 domestic guinea pig Cavia porcellus GCF_000151735.1_Cavpor3.0 3,144 2,723,219,641 58,460 59,849,908 37.17
38 Egyptian rousette Rousettus aegyptiacus GCF_001466805.2_Raegyp2.0 2,490 1,910,250,568 638 482,376 32.40
39 European shrew Sorex araneus GCF_000181275.1_SorAra2.0 12,845 2,423,158,183 188,953 231,054,757 35.32
40 Florida manatee Trichechus manatus latirostris GCF_000243295.1_TriManLat1.0 6,323 3,103,808,406 160,167 334,708,729 38.47
41 giant panda Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 81,467 2,299,509,015 119,126 54,196,184 39.14
42 goat Capra hircus GCF_001704415.1_ARS1 29,907 2,922,813,246 790 39,279 50.26
43 golden hamster Mesocricetus auratus GCF_000349665.1_MesAur1.0 21,484 2,504,925,039 216,216 428,748,785 24.30
44 gray short-tailed opossum Monodelphis domestica GCF_000002295.2_MonDom5 5,016 3,598,443,077 67,660 98,827,259 54.70
45 great roundleaf bat Hipposideros armiger GCF_001890085.1_ASM189008v1 7,571 2,236,581,172 172,751 281,788,372 27.71
46 Hawaiian monk seal Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 7,872 2,400,839,308 38,833 53,716,773 42.35
47 horse Equus caballus GCF_002863925.1_EquCab3.0 4,701 2,506,966,135 6,294 9,435,481 44.32
48 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 239 2,818,974,548 904 79,435,853 43.43
49 hybrid cattle Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 1,250 2,680,953,056 302 1,636,497 47.18
50 killer whale Orcinus orca GCF_000331955.2_Oorc_1.1 1,668 2,372,919,875 78,441 123,337,763 41.41
51 koala Phascolarctos cinereus GCF_002099425.1_phaCin_unsw_v4.1 1,907 3,192,581,492 1 1 41.45
52 large flying fox Pteropus vampyrus GCF_000151845.1_Pvam_2.0 36,094 2,198,284,804 189,340 181,040,307 33.09
53 leopard Panthera pardus GCF_001857705.1_PanPar1.0 50,377 2,578,019,207 214,953 99,153,465 40.87
54 lesser Egyptian jerboa Jaculus jaculus GCF_000280705.1_JacJac1.0 10,896 2,835,242,767 326,464 364,982,898 33.98
55 little brown bat Myotis lucifugus GCF_000147115.1_Myoluc2.0 11,654 2,034,575,300 61,131 68,155,432 35.79
56 long-finned pilot whale Globicephala melas GCF_006547405.1_ASM654740v1 6,416 2,333,163,658 14,859 9,903,588 45.07
57 long-tailed chinchilla Chinchilla lanigera GCF_000276665.1_ChiLan1.0 2,839 2,390,868,971 78,817 106,575,991 28.88
58 Malayan pangolin Manis javanica GCF_001685135.1_ManJav1.0 80,670 2,547,395,906 984,658 198,861,919 32.06
59 meerkat Suricata suricatta GCF_006229205.1_meerkat_22Aug2017_6uvM2_HiC 63,791 2,353,578,744 65,245 6,638,100 39.61
60 minke whale Balaenoptera acutorostrata scammoni GCF_000493695.1_BalAcu1.0 10,776 2,431,687,698 173,296 145,030,652 39.38
61 Mongolian gerbil Meriones unguiculatus GCF_002204375.1_MunDraft-v1.0 68,793 2,523,124,066 91,601 120,571,873 35.00
62 naked mole-rat Heterocephalus glaber GCF_000247695.1_HetGla_female_1.0 4,229 2,618,204,639 110,424 303,433,536 28.06
63 narwhal Monodon monoceros GCF_005190385.1_NGI_Narwhal_1 6,972 2,355,574,979 18,323 11,468,950 43.32
64 nine-banded armadillo Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 46,559 3,631,522,711 268,442 331,640,683 44.46
65 northern fur seal Callorhinus ursinus GCF_003265705.1_ASM326570v1 13,803 2,705,476,987 38,666 53,834,781 42.16
66 Norway rat Rattus norvegicus GCF_000001895.5_Rnor_6.0 953 2,870,182,909 145,731 140,322,104 41.25
67 Norway rat Rattus norvegicus GCF_000002265.2_Rn_Celera 7,032 2,616,369,673 111,391 123,963,010 40.75
68 Ord's kangaroo rat Dipodomys ordii GCF_000151885.1_Dord_2.0 65,193 2,236,368,823 83,035 171,054,779 36.61
69 Pacific walrus Odobenus rosmarus divergens GCF_000321225.1_Oros_1.0 3,893 2,400,150,193 66,766 99,898,119 39.82
70 Pacific white-sided dolphin Lagenorhynchus obliquidens GCF_003676395.1_ASM367639v1 5,013 2,332,936,118 16,699 10,292,894 45.13
71 pale spear-nosed bat Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p 141 2,117,764,065 831 22,966,458 30.49
72 pig Sus scrofa GCF_000003025.6_Sscrofa11.1 613 2,501,912,388 544 29,864,684 44.89
73 platypus Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 305 1,858,552,590 522 15,159,818 50.97
74 polar bear Ursus maritimus GCF_000687225.1_UrsMar_1.0 23,819 2,301,379,344 110,343 38,357,410 39.88
75 prairie deer mouse Peromyscus maniculatus bairdii GCF_000500345.1_Pman_1.0 30,921 2,630,541,020 182,263 157,004,803 30.10
76 prairie vole Microtus ochrogaster GCF_000317375.1_MicOch1.0 6,335 2,287,340,943 180,677 183,019,268 27.36
77 Przewalski's horse Equus przewalskii GCF_000696695.1_Burgud 53,097 2,395,954,271 80,963 21,135,449 40.72
78 puma Puma concolor GCF_003327715.1_PumCon1.0 2,175 2,432,966,684 178,992 114,069,938 40.33
79 rabbit Oryctolagus cuniculus GCF_000003625.3_OryCun2.0 3,241 2,737,462,810 80,789 133,467,217 42.23
80 red fox Vulpes vulpes GCF_003160815.1_VulVul2.2 82,424 2,421,568,072 246,167 71,714,148 39.22
81 woodland thicket rat Grammomys surdaster GCF_004785775.1_NIH_TR_1.0 23,656 2,412,664,998 76,623 34,663,040 36.53
82 Ryukyu mouse Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 3,162 2,553,121,441 306,650 280,223,414 34.85
83 sea otter Enhydra lutris kenyoni GCF_002288905.1_ASM228890v2 6,768 2,455,105,646 23,134 29,682,816 40.49
84 Rambouillet sheep Ovis aries GCF_002742125.1_Oar_rambouillet_v1.0 2,641 2,869,914,396 4,847 383,065 47.40
85 shrew mouse Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1 2,581 2,475,012,951 269,643 235,052,033 34.77
86 small Madagascar hedgehog Echinops telfairi GCF_000313985.2_ASM31398v2 7,490 2,947,119,619 270,406 341,923,468 32.24
87 southern multimammate mouse Mastomys coucha GCF_008632895.1_UCSF_Mcou_1 28 2,507,184,835 146,713 203,565,473 34.44
88 southern white rhinoceros Ceratotherium simum simum GCF_000283155.1_CerSimSim1.0 3,087 2,464,367,180 54,737 97,509,168 37.47
89 sperm whale Physeter catodon GCF_002837175.2_ASM283717v2 14,677 2,512,149,402 128,928 103,431,451 40.61
90 star-nosed mole Condylura cristata GCF_000260355.1_ConCri1.0 2,038 1,769,657,897 82,557 87,115,890 27.26
91 Steller sea lion Eumetopias jubatus GCF_004028035.1_ASM402803v1 7,222 2,417,469,577 18,994 14,214,605 42.91
92 Sunda flying lemur Galeopterus variegatus GCF_000696425.1_G_variegatus-3.0.2 179,514 3,187,660,572 412,608 384,823,142 34.01
93 Tasmanian devil Sarcophilus harrisii GCF_902635505.1_mSarHar1.11 106 3,086,674,442 354 46,771 44.26
94 thirteen-lined ground squirrel Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 12,483 2,478,393,770 141,005 167,333,470 33.26
95 Upper Galilee mountains blind mole rat Nannospalax galili GCF_000622305.1_S.galili_v1.0 154,976 3,061,424,619 201,121 147,976,214 36.23
96 water buffalo Bubalus bubalis GCF_003121395.1_ASM312139v1 509 2,655,780,776 410 373,500 47.14
97 Weddell seal Leptonychotes weddellii GCF_000349705.1_LepWed1.0 16,711 3,156,902,762 152,836 933,738,633 29.08
98 western European hedgehog Erinaceus europaeus GCF_000296755.1_EriEur2.0 5,803 2,715,720,925 219,764 382,647,390 42.03
99 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 1,763 2,474,071,336 79 18,851 33.02
100 white-tailed deer Odocoileus virginianus texanus GCF_002102435.1_Ovir.te_1.0 17,026 2,380,505,687 107,058 21,568,183 40.49
101 Wild Bactrian camel Camelus ferus GCF_000311805.1_CB1 13,334 2,009,194,609 60,971 23,778,176 33.90
102 wild yak Bos mutus GCF_000298355.1_BosGru_v2.0 41,192 2,645,161,911 192,006 120,154,638 42.50
103 Yangtze finless porpoise Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 13,699 2,284,628,084 52,647 16,346,815 41.77
104 Yangtze River dolphin Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 30,713 2,429,212,129 124,797 32,195,939 43.05
105 yellow-bellied marmot Marmota flaviventris GCF_003676075.1_ASM367607v1 31,149 2,576,929,359 38,354 56,254,325 32.75
106 zebu cattle Bos indicus GCF_000247795.1_Bos_indicus_1.0 32 2,673,965,444 6,941,272 204,955,425 42.93
TOTALS:total assembly count 106 2,540,399 270,463,711,683 21,898,896 14,261,115,612  

Additional hubs with collections of assemblies
Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates