Fish Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of fish only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/fish/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Fish Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 allis shad Alosa alosa GCF_017589495.1_AALO_Geno_1.1 SAMN16418510 PRJNA668689 2021-03-30
2 Amazon molly Poecilia formosa GCF_000485575.1_Poecilia_formosa-5.1.2 SAMN02981564 PRJNA89109 2013-10-28
3 American shad Alosa sapidissima GCF_018492685.1_fAloSap1.pri SAMN18857608 PRJNA728145 2021-05-25
4 annual killifish Austrofundulus limnaeus GCF_001266775.1_Austrofundulus_limnaeus-1.0 SAMN03490872 PRJNA280995 2015-07-28
5 Arctic char Salvelinus alpinus GCF_002910315.2_ASM291031v2 SAMN06561764 PRJNA348349 2018-02-12
6 Aristotle's catfish (2022 VGP) Silurus aristotelis GCA_946808225.1_fSilAri3.1 SAMEA12595289 PRJEB55686 2022-09-15
7 Arkansas darter Etheostoma cragini GCF_013103735.1_CSU_Ecrag_1.0 SAMN14351042 PRJNA611833 2020-05-15
8 Asian bonytongue (2019 VGP) Scleropages formosus GCF_900964775.1_fSclFor1.1 SAMEA4872123 PRJEB31995 2019-04-11
9 Asian bonytongue (alt pseudohaplotype VGP) Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype SAMEA4872123 PRJEB31996 2019-04-11
10 Atlantic cod (2019 VGP) Gadus morhua GCF_902167405.1_gadMor3.0 SAMEA5574046 PRJEB33455 2019-07-16
11 Atlantic cod (alt pseudohaplotype VGP) Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype SAMEA5574046 PRJEB33454 2019-07-16
12 Atlantic halibut (2019 refseq VGP) Hippoglossus hippoglossus GCF_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31
13 Atlantic halibut (alt pseudohaplotype 2019 VGP) Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt SAMN12629501 PRJNA562002 2019-12-27
14 Atlantic herring (v2) Clupea harengus GCF_900700415.2_Ch_v2.0.2 SAMEA5339254 PRJEB31270 2019-04-16
15 Atlantic horse mackerel (2021 VGP) Trachurus trachurus GCA_905171665.2_fTraTra1.2 SAMEA7524396 PRJEB42172 2021-11-26
16 Atlantic salmon (refseq 2021) Salmo salar GCF_905237065.1_Ssal_v3.1 SAMEA8062739 PRJEB43080 2021-04-21
17 Atlantic salmon (Sally 2015) Salmo salar GCF_000233375.1_ICSASG_v2 SAMN02749551 PRJNA72713 2015-06-10
18 Atlantic turbot (AOZZmale01 2020) Scophthalmus maximus GCF_013347765.1_ASM1334776v1 SAMN14896287 PRJNA631898 2020-06-18
19 ballan wrasse Labrus bergylta GCF_900080235.1_BallGen_V1 SAMEA3939555 PRJEB13687 2016-05-03
20 banded archerfish Toxotes jaculatrix GCF_017976425.1_fToxJac2.pri SAMN18445299 PRJNA717046 2021-04-15
21 barbel (2022 VGP) Barbus barbus GCA_936440315.1_fBarBab1.1 SAMEA13335783 PRJEB52077 2022-05-03
22 barramundi perch Lates calcarifer GCF_001640805.1_ASM164080v1 SAMN04026617 PRJNA294489 2016-05-09
23 bicolor damselfish Stegastes partitus GCF_000690725.1_Stegastes_partitus-1.0.2 SAMN02743342 PRJNA89147 2014-05-13
24 black rockcod Notothenia coriiceps GCF_000735185.1_NC01 SAMN02206445 PRJNA66471 2014-07-29
25 blue tilapia (BGI-SZ) Oreochromis aureus GCF_005870065.1_ASM587006v1 SAMN11513266 PRJNA539829 2019-05-28
26 blue tilapia (Guangdong) Oreochromis aureus GCF_013358895.1_ZZ_aureus SAMN14256941 PRJNA609616 2020-06-19
27 blunt-snouted clingfish (2019 refseq VGP) Gouania willdenowi GCF_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06
28 blunt-snouted clingfish (alt pseudohaplotype VGP) Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype SAMEA104026382 PRJEB30360 2019-02-07
29 Boeseman's rainbowfish Melanotaenia boesemani GCF_017639745.1_fMelBoe1.pri SAMN12623618 PRJNA561965 2021-03-30
30 bonti-bonti (T.bonti 2022 VGP) Telmatherina bonti GCA_933228915.1_fTelBon1.1 SAMEA8592627 PRJEB51590 2022-03-23
31 bony fishes Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03
32 brown-marbled grouper (2020) Epinephelus fuscoguttatus GCF_011397635.1_E.fuscoguttatus.final_Chr_v1 SAMD00201013 PRJDB9224 2020-02-20
33 Burton's mouthbrooder (Broad 2011) Haplochromis burtoni GCF_000239415.1_AstBur1.0 SAMN00139641 PRJNA60363 2011-12-22
34 Burton's mouthbrooder (NCSU 2021) Haplochromis burtoni GCF_018398535.1_NCSU_Asbu1 SAMN17845830 PRJNA701062 2021-05-19
35 butterfish Scatophagus argus GCF_020382885.2_fScaArg1.pri SAMN12623616 PRJNA749579 2021-10-13
36 channel catfish (USDA103 v2 2019) Ictalurus punctatus GCF_001660625.2_IpCoco_1.2 SAMN03486842 PRJNA281269 2019-01-25
37 channel bull blenny (2019 refseq VGP) Cottoperca gobio GCF_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06
38 channel bull blenny (alt pseudohaplotype 2019 VGP) Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype SAMEA104242975 PRJEB30256 2019-02-07
39 chichlid (S. diagramma) Simochromis diagramma GCF_900408965.1_fSimDia1.1 SAMEA104026415 PRJEB26682 2018-06-18
40 Chinese large-mouth catfish (SWU-2019-XX 2020) Silurus meridionalis GCF_014805685.1_ASM1480568v1 SAMN14558653 PRJNA623722 2020-10-02
41 Chinook salmon (v1 2018 female) Oncorhynchus tshawytscha GCF_002872995.1_Otsh_v1.0 SAMN07843558 PRJNA416144 2018-01-16
42 Chinook salmon (v2 2021 male) Oncorhynchus tshawytscha GCF_018296145.1_Otsh_v2.0 SAMN17219827 PRJNA416144 2021-05-07
43 chum salmon Oncorhynchus keta GCF_012931545.1_Oket_V1 SAMN12367893 PRJNA556729 2020-04-29
44 climbing perch (v1.2 2018 refseq VGP) Anabas testudineus GCF_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19
45 climbing perch (alt pseudohaplotype 2019 VGP) Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype SAMEA104026376 PRJEB30391 2019-02-07
46 clown anemonefish Amphiprion ocellaris GCF_002776465.1_AmpOce1.0 SAMN07982614 PRJNA407816 2017-11-16
47 coho salmon Oncorhynchus kisutch GCF_002021735.2_Okis_V2 SAMN05991263 PRJNA352719 2019-11-04
48 common carp SPL01 (2021) Cyprinus carpio GCF_018340385.1_ASM1834038v1 SAMN17005855 PRJNA682709 2021-05-12
49 convict blenny (chichlid 2021 VGP) Pholidichthys leucotaenia GCA_020510985.1_fPhoLeu1.pri SAMN12623617 PRJNA749575 2021-10-15
50 copperband butterflyfish Chelmon rostratus GCF_017976325.1_fCheRos1.pri SAMN12623620 PRJNA561969 2021-04-15
51 cunner (2021 VGP) Tautogolabrus adspersus GCA_020745685.1_fTauAds1.pri.cur SAMN22589422 PRJNA774878 2021-11-05
52 dark-edged splitfin Girardinichthys multiradiatus GCF_021462225.1_DD_fGirMul_XY1 SAMN22242658 PRJNA768329 2022-02-24
53 delta smelt Hypomesus transpacificus GCF_021917145.1_fHypTra1 SAMN24964577 PRJNA762373 2022-02-04
54 denticle herring (2019 VGP) Denticeps clupeoides GCF_900700375.1_fDenClu1.1 SAMEA104129917 PRJEB31545 2019-03-16
55 denticle herring (alt pseudohaplotype 2019 VGP) Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype SAMEA104129917 PRJEB31546 2019-03-27
56 eastern happy Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 SAMEA104026430 PRJEB24325 2018-05-30
57 electric eel (MRS-EE1 2018 U Wisconsin) Electrophorus electricus GCF_003665695.1_Ee_SOAP_WITH_SSPACE SAMN02802636 PRJNA249073 2018-10-30
58 electric eel (2020 VGP) Electrophorus electricus GCF_013358815.1_fEleEle1.pri SAMN12623625 PRJNA561981 2020-06-23
59 elephant fish B.brachyistius (T26 2022) Brienomyrus brachyistius GCF_023856365.1_BBRACH_0.4 SAMN28860763 PRJNA845764 2022-06-28
60 emerald rockcod Trematomus bernacchii GCF_902827165.1_fTreBer1.1 SAMEA104132834 PRJEB37642 2020-04-15
61 European perch Perca fluviatilis GCF_010015445.1_GENO_Pfluv_1.0 SAMN12071746 PRJNA549142 2020-01-30
62 fathead minnow Pimephales promelas GCF_016745375.1_EPA_FHM_2.0 SAMN12875914 PRJNA565199 2021-01-24
63 flathead mullet Mugil cephalus GCF_022458985.1_CIBA_Mcephalus_1.1 SAMN16703275 PRJNA675305 2022-03-04
64 flier cichlid (MPI-CPG 2019 refseq VGP) Archocentrus centrarchus GCF_007364275.1_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01
65 flier cichlid (alt pseudohaplotype MPI-CPG 2019 VGP) Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h SAMN09948522 PRJNA489130 2019-07-24
66 freshwater garfish (fXenCan1 2020 VGP) Xenentodon cancila GCA_014839995.1_fXenCan1.pri SAMN12623622 PRJNA561973 2020-10-02
67 giant grouper Epinephelus lanceolatus GCF_005281545.1_ASM528154v1 SAMN10786578 PRJNA516312 2019-05-13
68 gilthead seabream (2019 VGP) Sparus aurata GCF_900880675.1_fSpaAur1.1 SAMEA104384835 PRJEB31901 2019-07-30
69 gilthead seabream (alt pseudohaplotype 2019 VGP) Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype SAMEA104384835 PRJEB31902 2019-07-11
70 golden-line barbel Sinocyclocheilus grahami GCF_001515645.1_SAMN03320097.WGS_v1.1 SAMN03320097 PRJNA274017 2015-12-16
71 goldfish Carassius auratus GCF_003368295.1_ASM336829v1 SAMN09670328 PRJNA481500 2018-08-09
72 great blue-spotted mudskipper Boleophthalmus pectinirostris GCF_000788275.1_BP.fa SAMN03201692 PRJNA232434 2014-12-02
73 greater amberjack Seriola dumerili GCF_002260705.1_Sdu_1.0 SAMD00083043 PRJDB5856 2017-08-03
74 greater pipefish (v1.2 2020 VGP) Syngnathus acus GCF_901709675.1_fSynAcu1.2 SAMEA104381750 PRJEB32741 2020-07-31
75 greater pipefish (alt pseudohaplotype 2019 VGP) Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype SAMEA104381750 PRJEB32742 2019-06-02
76 green swordtail Xiphophorus hellerii GCF_003331165.1_Xiphophorus_hellerii-4.1 SAMN09545741 PRJNA290782 2019-12-05
77 Gulf pipefish (Florida 2022) Syngnathus scovelli GCF_024217435.1_RoL_Ssco_1.1 SAMN29251497 PRJNA851781 2022-07-12
78 guppy Poecilia reticulata GCF_000633615.1_Guppy_female_1.0_MT SAMN02404645 PRJNA238429 2014-04-28
79 honeycomb rockfish Sebastes umbrosus GCF_015220745.1_fSebUmb1.pri SAMN12629503 PRJNA562005 2020-11-03
80 horned golden-line barbel Sinocyclocheilus rhinocerous GCF_001515625.1_SAMN03320098_v1.1 SAMN03320098 PRJNA274017 2015-12-14
81 humphead wrasse Cheilinus undulatus GCF_018320785.1_ASM1832078v1 SAMN14532944 PRJNA622923 2021-05-12
82 Indian medaka Oryzias melastigma GCF_002922805.2_ASM292280v2 SAMN07596545 PRJNA401159 2020-04-13
83 Indian glassy fish (2019 VGP) Parambassis ranga GCF_900634625.1_fParRan2.1 SAMEA4675621 PRJEB30257 2019-02-06
84 Indian glassy fish (alt pseudohaplotype 2019 VGP) Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype SAMEA4675621 PRJEB30258 2019-02-12
85 Indo-Pacific tarpon (2020 VGP) Megalops cyprinoides GCF_013368585.1_fMegCyp1.pri SAMN12623619 PRJNA561967 2020-06-23
86 Japanese flounder Paralichthys olivaceus GCF_001970005.1_Flounder_ref_guided_V1.0 SAMN05817825 PRJNA344006 2017-01-24
87 Japanese medaka Oryzias latipes GCF_002234675.1_ASM223467v1 SAMN06689957 PRJNA325079 2017-07-27
88 jewelled blenny (2019 VGP) Salarias fasciatus GCF_902148845.1_fSalaFa1.1 SAMEA4966329 PRJEB33184 2019-07-03
89 jewelled blenny (alt pseudohaplotype 2019 VGP) Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype SAMEA4966329 PRJEB33183 2019-07-03
90 kelp grouper (mb 2019) Epinephelus moara GCF_006386435.1_YSFRI_EMoa_1.0 SAMN11657372 PRJNA543191 2019-06-26
91 lake trout Salvelinus namaycush GCF_016432855.1_SaNama_1.0 SAMN16985724 PRJNA682269 2021-01-06
92 lake whitefish (EN20210322 male 2021 Laval U) Coregonus clupeaformis GCF_018398675.1_ASM1839867v1 SAMN18351024 PRJNA715481 2021-05-25
93 lake whitefish (EN_2021a female 2021 Laval U) Coregonus clupeaformis GCF_020615455.1_ASM2061545v1 SAMN21920801 PRJNA767633 2021-11-04
94 large yellow croaker Larimichthys crocea GCF_000972845.2_L_crocea_2.0 SAMN03092871 PRJNA245366 2018-11-27
95 largemouth bass Micropterus salmoides GCF_014851395.1_ASM1485139v1 SAMN15299117 PRJNA640112 2020-10-05
96 largescale foureyes (2020 VGP) Anableps anableps GCA_014839685.1_fAnaAna1.pri SAMN12623628 PRJNA561985 2020-10-02
97 leopard coralgrouper Plectropomus leopardus GCF_008729295.1_YSFRI_Pleo_2.0 SAMN11897347 PRJNA545594 2020-05-27
98 live sharksucker (2019 VGP) Echeneis naucrates GCF_900963305.1_fEcheNa1.1 SAMEA4966390 PRJEB31992 2019-04-11
99 live sharksucker (alt pseudohaplotype 2019 VGP) Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype SAMEA4966390 PRJEB31993 2019-04-11
100 longspined bullhead (2021 VGP) Taurulus bubalis GCA_910589615.1_fTauBub2.1 SAMEA7522994 PRJEB45317 2021-07-07
101 lumpfish (2019 refseq VGP) Cyclopterus lumpus GCF_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23
102 lumpfish (alt pseudohaplotype 2019 VGP) Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt SAMN12629502 PRJNA562004 2019-12-19
103 lyretail cichlid Neolamprologus brichardi GCF_000239395.1_NeoBri1.0 SAMN00139653 PRJNA60365 2011-12-22
104 mandarin fish Siniperca chuatsi GCF_020085105.1_ASM2008510v1 SAMN19768590 PRJNA738969 2021-09-24
105 mangrove rivulus Kryptolebias marmoratus GCF_001649575.2_ASM164957v2 SAMN04622665 PRJNA626665 2020-11-16
106 Mexican tetra (2017 WashU) Astyanax mexicanus GCF_000372685.2_Astyanax_mexicanus-2.0 SAMN02981523 PRJNA89115 2017-09-25
107 Mexican tetra (Pach_M1 Pachon cave 2021) Astyanax mexicanus GCA_019721115.1_AMEX_1.1 SAMN18310656 PRJNA734455 2021-08-25
108 Mexican tetra (ESR-SI-001 2022) Astyanax mexicanus GCF_023375975.1_AstMex3_surface SAMN25965548 PRJNA807270 2022-05-19
109 milkfish (2019 VGP) Chanos chanos GCF_902362185.1_fChaCha1.1 SAMEA5159473 PRJEB33882 2019-08-14
110 milkfish (alt pseudohaplotype 2019 VGP) Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype SAMEA5159473 PRJEB33881 2019-08-16
111 Monterrey platyfish Xiphophorus couchianus GCF_001444195.1_X_couchianus-1.0 SAMN03922721 PRJNA290781 2018-09-19
112 mudskipper P.magnuspinnatus (2020 VGP) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03
113 mudskipper P.magnuspinnatus (alt pseudohaplotype 2020 VGP) Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt SAMN12629500 PRJNA561999 2020-01-03
114 mummichog (Maine) Fundulus heteroclitus GCF_000826765.1_Fundulus_heteroclitus-3.0.2 SAMN03277211 PRJNA177717 2015-01-21
115 mummichog (U. Missouri) Fundulus heteroclitus GCF_011125445.2_MU-UCD_Fhet_4.1 SAMN13668183 PRJNA597160 2020-08-13
116 New Zealand spotty (2019 VGP) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18
117 New Zealand spotty (alt pseudohaplotype 2019 VGP) Notolabrus celidotus GCA_009762545.1_fNotCel1.alt SAMN12623201 PRJNA561957 2019-12-17
118 Nile tilapia Oreochromis niloticus GCF_001858045.2_O_niloticus_UMD_NMBU SAMN05859795 PRJNA344471 2018-06-29
119 ninespine stickleback Pungitius pungitius GCF_902500615.1_NSP_V7 SAMEA5986199 PRJEB33823 2020-10-12
120 northern pike Esox lucius GCF_004634155.1_Eluc_v4 SAMN09690694 PRJNA221548 2019-04-17
121 northern pike (alt pseudohaplotype 2020 VGP) Esox lucius GCA_011004835.1_fEsoLuc1.alt SAMN12623624 PRJNA561978 2020-02-24
122 northern pike (2020 refseq VGP) Esox lucius GCF_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05
123 Old Calabar mormyrid Paramormyrops kingsleyae GCF_002872115.1_PKINGS_0.1 SAMN08000665 PRJNA417677 2018-01-10
124 orangethroat darter Etheostoma spectabile GCF_008692095.1_UIUC_Espe_1.0 SAMN12373147 PRJNA556880 2019-10-07
125 orbiculate cardinalfish (2019 VGP) Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 SAMEA4966328 PRJEB33177 2019-07-03
126 orbiculate cardinalfish (alt pseudohaplotype 2019 VGP) Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype SAMEA4966328 PRJEB33176 2019-07-03
127 P.nyererei 1_Seehausen Pundamilia nyererei GCF_000239375.1_PunNye1.0 SAMN00149614 PRJNA60367 2011-12-22
128 Pacific halibut (PH-IPHC-18 2020) Hippoglossus stenolepis GCF_013339905.1_IPHC_HiSten_1.0 SAMN14503176 PRJNA622249 2020-06-16
129 Pacific halibut (QCI-W04-F060 2022) Hippoglossus stenolepis GCF_022539355.2_HSTE1.2 SAMN29538134 PRJNA622249 2022-03-10
130 peladilla (galaxoid fish 2021 VGP) Aplochiton taeniatus GCA_017639675.1_fAplTae1.pri SAMN12623621 PRJNA561971 2021-03-30
131 pike-perch Sander lucioperca GCF_008315115.2_SLUC_FBN_1.2 SAMN12618724 PRJNA561467 2020-08-14
132 pinecone soldierfish (2019 VGP) Myripristis murdjan GCF_902150065.1_fMyrMur1.1 SAMEA4872133 PRJEB33188 2019-07-03
133 pinecone soldierfish (alt pseudohaplotype 2019 VGP) Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype SAMEA4872133 PRJEB33187 2019-07-03
134 pink salmon Oncorhynchus gorbuscha GCF_021184085.1_OgorEven_v1.0 SAMN18987060 PRJNA556728 2021-12-15
135 ploughfish Gymnodraco acuticeps GCF_902827175.1_fGymAcu1.1 SAMEA104242997 PRJEB37639 2020-04-15
136 prehistoric monster fish (2019 refseq VGP) Thalassophryne amazonica GCF_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30
137 prehistoric monster fish (alt pseudohaplotype 2019 VGP) Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype SAMEA104129913 PRJEB34605 2019-09-30
138 rainbow trout (Swanson) Oncorhynchus mykiss GCF_002163495.1_Omyk_1.0 SAMN05449231 PRJNA335610 2017-06-02
139 rainbow trout (Arlee) Oncorhynchus mykiss GCF_013265735.2_USDA_OmykA_1.1 SAMN14537335 PRJNA623027 2020-09-23
140 red-bellied piranha (Pna-1 2016) Pygocentrus nattereri GCF_001682695.1_Pygocentrus_nattereri-1.0.2 SAMN04522165 PRJNA301891 2016-07-12
141 red-bellied piranha (2020 VGP) Pygocentrus nattereri GCF_015220715.1_fPygNat1.pri SAMN12623623 PRJNA561975 2020-11-03
142 reedfish (alt pseudohaplotype VGP) Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype SAMEA104026374 PRJEB31582 2019-03-27
143 Rio pearlfish (Nwh7 v2 2021) Nematolebias whitei GCF_014905685.2_NemWhi1 SAMN12588121 PRJNA560526 2021-03-24
144 river trout Salmo trutta GCF_901001165.1_fSalTru1.1 SAMEA994732 PRJEB32115 2019-06-02
145 rock gunnel (2021 VGP) Pholis gunnellus GCA_910591455.2_fPhoGun1.2 SAMEA7522838 PRJEB45449 2021-11-18
146 sailfin molly Poecilia latipinna GCF_001443285.1_P_latipinna-1.0 SAMN02048973 PRJNA196862 2015-11-13
147 Senegalese sole Solea senegalensis GCF_019176455.1_IFAPA_SoseM_1 SAMN15430148 PRJNA643826 2021-07-09
148 sheepshead minnow Cyprinodon variegatus GCF_000732505.1_C_variegatus-1.0 SAMN02736898 PRJNA89149 2015-10-01
149 shortfin molly Poecilia mexicana GCF_001443325.1_P_mexicana-1.0 SAMN02048972 PRJNA196869 2015-11-13
150 Siamese fighting fish (v3 2020 VGP) Betta splendens GCF_900634795.3_fBetSpl5.3 SAMEA104381735 PRJEB30365 2020-08-25
151 Siamese fighting fish (alt pseudohaplotype 2019 VGP) Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype SAMEA104381735 PRJEB30366 2019-02-07
152 smallmouth bass Micropterus dolomieu GCF_021292245.1_ASM2129224v1 SAMN22851699 PRJNA777359 2022-01-11
153 sockeye salmon (On170113-E2 v2 2019) Oncorhynchus nerka GCF_006149115.2_Oner_1.1 SAMN11519041 PRJNA530256 2019-06-07
154 South Georgia icefish Pseudochaenichthys georgianus GCF_902827115.1_fPseGeo1.1 SAMEA104132832 PRJEB37648 2020-04-15
155 southern platyfish Xiphophorus maculatus GCF_002775205.1_X_maculatus-5.0-male SAMN08025980 PRJNA72525 2017-12-07
156 southern bluefin tuna Thunnus maccoyii GCF_910596095.1_fThuMac1.1 SAMEA8654747 PRJEB46021 2021-07-07
157 Southwestern China cavefish Sinocyclocheilus anshuiensis GCF_001515605.1_SAMN03320099.WGS_v1.1 SAMN03320099 PRJNA274017 2015-12-14
158 spiny chromis Acanthochromis polyacanthus GCF_002109545.1_ASM210954v1 SAMN06347167 PRJNA311159 2017-04-25
159 sterlet (maternal 2020 VGP) Acipenser ruthenus GCA_902713425.1_fAciRut3.1_maternal_haplotype SAMEA5572864 PRJEB35912 2020-01-08
160 sterlet (paternal 2020 VGP) Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype SAMEA5572864 PRJEB35913 2020-01-08
161 stone loach (2022 VGP) Barbatula barbatula GCA_947034865.1_fBarBar1.1 SAMEA11296540 PRJEB56420 2022-10-07
162 striped catfish Vietnam Pangasianodon hypophthalmus GCF_003671635.1_VN_pangasius SAMN08866743 PRJNA448819 2018-10-22
163 striped sea-bass Morone saxatilis GCF_004916995.1_NCSU_SB_2.0 SAMN11399929 PRJNA532441 2019-04-26
164 striped catfish Indonesia Pangasianodon hypophthalmus GCF_009078355.1_GENO_Phyp_1.0 SAMN11969507 PRJNA547555 2019-10-22
165 Sumatra barb Puntigrus tetrazona GCF_018831695.1_ASM1883169v1 SAMN17036344 PRJNA683758 2021-06-10
166 swamp eel Monopterus albus GCF_001952655.1_M_albus_1.0 SAMN06219872 PRJNA183073 2017-01-17
167 swordfish Xiphias gladius GCF_016859285.1_ASM1685928v1 SAMN16522248 PRJNA670841 2021-02-12
168 tambaqui Colossoma macropomum GCF_904425465.1_Colossoma_macropomum SAMEA7302664 PRJEB40318 2020-09-25
169 three-spined stickleback Gasterosteus aculeatus aculeatus GCF_016920845.1_GAculeatus_UGA_version5 SAMN15223905 PRJNA639125 2021-02-23
170 tiger tail seahorse (QL1 v2 2016) Hippocampus comes GCF_001891065.2_H_comes_QL1_v1.1 SAMN04531611 PRJNA314292 2016-12-08
171 tongue sole Cynoglossus semilaevis GCF_000523025.1_Cse_v1.0 SAMN02595200 PRJNA73987 2014-01-28
172 torafugu (2019 VGP) Takifugu rubripes GCF_901000725.2_fTakRub1.2 SAMEA104384834 PRJEB31988 2019-06-05
173 torafugu (alt pseudohaplotype 2019 VGP) Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype SAMEA104384834 PRJEB31989 2019-06-05
174 turbot (ysfricsl-2021 2022) Scophthalmus maximus GCF_022379125.1_ASM2237912v1 SAMN24450573 PRJNA792617 2022-02-24
175 turquoise killifish Nothobranchius furzeri GCF_001465895.1_Nfu_20140520 SAMEA2698544 PRJEB5837 2015-12-11
176 warty frogfish (2020 VGP) Antennarius maculatus GCA_013358685.1_fAntMac1.pri SAMN12623626 PRJNA561983 2020-06-18
177 western mosquitofish Gambusia affinis GCF_019740435.1_SWU_Gaff_1.0 SAMN13752108 PRJNA599452 2021-08-25
178 White Sands pupfish Cyprinodon tularosa GCF_016077235.1_ASM1607723v1 SAMN16509697 PRJNA670474 2020-12-15
179 wolf-eel Anarrhichthys ocellatus GCF_004355925.1_GSC_Weel_1.0 SAMN10245424 PRJNA496475 2019-03-08
180 Wuchang bream Megalobrama amblycephala GCF_018812025.1_ASM1881202v1 SAMN18522313 PRJNA343584 2021-06-09
181 yellow catfish (hzauxx_2018 2022) Tachysurus fulvidraco GCF_022655615.1_HZAU_PFXX_2.0 SAMN10031298 PRJNA489116 2022-03-21
182 yellow catfish (Tf-2017 2018) Tachysurus fulvidraco GCF_003724035.1_ASM372403v1 SAMN10147840 PRJNA494039 2018-11-13
183 yellow perch (YP-PL-M2 2019) Perca flavescens GCF_004354835.1_PFLA_1.0 SAMN10722690 PRJNA514308 2019-03-19
184 yellowfin seabream Acanthopagrus latus GCF_904848185.1_fAcaLat1.1 SAMN16236878 PRJEB40700 2020-10-12
185 yellowfin tuna Thunnus albacares GCF_914725855.1_fThuAlb1.1 SAMEA8654749 PRJEB47267 2021-09-16
186 yellowtail amberjack Seriola lalandi dorsalis GCF_002814215.1_Sedor1 SAMN04902367 PRJNA319656 2017-12-08
187 Zealand spotty Notolabrus celidotus GCF_009762535.1_fNotCel1.pri SAMN12623201 PRJNA561956 2019-12-18
188 zebra mbuna Maylandia zebra GCF_000238955.4_M_zebra_UMD2a SAMN03892560 PRJNA60369 2018-04-10
189 zebrafish (T5D 2021) Danio rerio GCA_018400075.1_ASM1840007v1 SAMN09710566 PRJNA482650 2021-05-19
190 zebrafish (WGS:CAHPTA01 2020 VGP) Danio rerio GCA_903684865.1_fDreABH1.1 SAMEA4760846 PRJEB38589 2020-06-28
191 zebrafish (WGS:CAHPTB02 2020 VGP) Danio rerio GCA_903684855.2_fDreTuH1.2 SAMEA4760849 PRJEB38588 2020-07-31
192 zebrafish (WGS:CALUEM01 2022 VGP) Danio rerio GCA_944039275.1_fDanRer4.1 SAMEA14088276 PRJEB53407 2022-06-24
193 zebrafish GRCz11 Danio rerio GCF_000002035.6_GRCz11 SAMN06930106 PRJNA11776 2017-05-09
194 zig-zag eel (alt pseudohaplotype VGP) Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype SAMEA104026378 PRJEB31553 2019-04-01
195 zig-zag eel (v1.2 2019 VGP) Mastacembelus armatus GCF_900324485.2_fMasArm1.2 SAMEA104026378 PRJEB25769 2019-03-16

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 57 assemblies assembly stats track stats
Mammals 348 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats