Birds Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of birds only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 Abyssinian ground-hornbill (2019)[IGV] Bucorvus abyssinicus GCA_009769605.1_bBucAby1.pri SAMN12614799 PRJNA561887 2019-12-23
2 Abyssinian ground-hornbill (alternate hap 2019)[IGV] Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt SAMN12614799 PRJNA561886 2019-12-19
3 acorn woodpecker (bairdi alternate hap 2022)[IGV] Melanerpes formicivorus GCA_026170555.1_bMelFor1.0.a SAMN30523671 PRJNA875157 2022-11-14
4 acorn woodpecker (bairdi primary hap 2022)[IGV] Melanerpes formicivorus GCA_026170545.1_bMelFor1.0.p SAMN30523671 PRJNA875158 2022-11-14
5 Adelie penguin[IGV] Pygoscelis adeliae GCF_000699105.1_ASM69910v1 SAMN02596601 PRJNA235983 2014-06-06
6 African ostrich[IGV] Struthio camelus australis GCF_000698965.1_ASM69896v1 SAMN02316164 PRJNA212875 2014-06-06
7 American crow[IGV] Corvus brachyrhynchos GCF_000691975.1_ASM69197v1 SAMN02297499 PRJNA212869 2014-06-02
8 American flamingo (2019)[IGV] Phoenicopterus ruber ruber GCA_009819775.1_bPhoRub2.pri SAMN12614931 PRJNA561888 2019-12-31
9 American flamingo (alternate hap 2019)[IGV] Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt SAMN12614931 PRJNA561889 2019-12-23
10 Anna's hummingbird (alternate hap BGI_N300 2018)[IGV] Calypte anna GCA_003957575.1_bCalAnn1_v1.h SAMN02265252 PRJNA489140 2018-12-20
11 Anna's hummingbird (BGI_N300 2019 refseq)[IGV] Calypte anna GCF_003957555.1_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16
12 bald eagle[IGV] Haliaeetus leucocephalus GCF_000737465.1_Haliaeetus_leucocephalus-4.0 SAMN02664716 PRJNA237821 2014-08-04
13 band-tailed pigeon (hap2 2024)[IGV] Patagioenas fasciata GCA_036971685.1_bPatFas1.hap2 SAMN40018840 PRJNA1078808 2024-03-06
14 bar-tailed trogon[IGV] Apaloderma vittatum GCF_000703405.1_ASM70340v1 SAMN02318033 PRJNA212878 2014-06-16
15 barn owl (U. Lausanne 2021)[IGV] Tyto alba GCF_018691265.1_T.alba_DEE_v4.0 SAMN17526497 PRJNA694551 2021-06-03
16 Barn swallow (bHirRus1 v3 alternate hap 2021)[IGV] Hirundo rustica GCA_015227815.3_bHirRus1.alt.v3 SAMN14675488 PRJNA636191 2021-11-24
17 Barn swallow (bHirRus1 v3 primary hap 2021 refseq)[IGV] Hirundo rustica GCF_015227805.2_bHirRus1.pri.v3 SAMN14675488 PRJNA636192 2021-11-30
18 Bengalese finch[IGV] Lonchura striata domestica GCF_005870125.1_lonStrDom2 SAMN11521339 PRJNA369279 2019-06-05
19 bird P.flaviventris (CSIRO_AGI_PZ_B2104156 2023)[IGV] Pezoporus flaviventris GCF_033815535.1_CSIRO_AGI_Pfla_v1 SAMN38123840 PRJNA1036367 2023-11-20
20 bird P.pipra (hap1 2024)[IGV] Pseudopipra pipra GCF_036250125.1_bDixPip1.hap1 SAMN32739894 PRJNA1057371 2024-01-31
21 bird Z.leucophrys gambelii (GWCS_2022_RI 2023)[IGV] Zonotrichia leucophrys gambelii GCF_028769735.1_RI_Zleu_2.0 SAMN31812169 PRJNA889240 2023-12-27
22 black swan (v2 Queensland, Australia AKBS03 2022)[IGV] Cygnus atratus GCF_013377495.2_CAtr_DNAZoo_HiC_assembly SAMN15332785 PRJNA640810 2022-08-03
23 black-capped chickadee (hap1 2023)[IGV] Poecile atricapillus GCF_030490865.1_bPoeAtr1.hap1 SAMN35074507 PRJNA972429 2023-07-18
24 black-capped chickadee (hap2 2023)[IGV] Poecile atricapillus GCA_030490855.1_bPoeAtr1.hap2 SAMN35074507 PRJNA972430 2023-07-18
25 black-headed gull (Kunming 2023)[IGV] Chroicocephalus ridibundus GCA_030820635.1_KIZ_Lrid_1.0 SAMN36812646 PRJNA1001583 2023-08-18
26 black-headed gull (primary hap 2024)[IGV] Chroicocephalus ridibundus GCA_963924245.1_bChrRid1.1 SAMEA112468038 PRJEB71951 2024-01-20
27 black-headed gull (primary hap 2024)[IGV] Chroicocephalus ridibundus GCF_963924245.1_bChrRid1.1 SAMEA112468038 PRJEB71951 2024-01-20
28 black-legged kittiwake (bRisTri1 2023 refseq)[IGV] Rissa tridactyla GCF_028500815.1_bRisTri1.patW.cur.20221130 SAMN32104255 PRJNA909853 2023-02-09
29 black-legged kittiwake (bRisTri1.mat 2023)[IGV] Rissa tridactyla GCA_028501385.1_bRisTri1.mat.cur.20221130 SAMN32104255 PRJNA909854 2023-02-10
30 black-throated flowerpiercer[IGV] Diglossa brunneiventris GCA_019023105.1_LSU_DiBr_2.0 SAMN17308174 PRJNA629984 2021-06-24
31 blackcap (2019)[IGV] Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri SAMN12369542 PRJNA558064 2019-12-31
32 blackcap (alternate hap 2019)[IGV] Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt SAMN12369542 PRJNA558065 2019-12-23
33 blue tit[IGV] Cyanistes caeruleus GCF_002901205.1_cyaCae2 SAMN03734925 PRJNA284903 2018-01-26
34 blue-and-yellow macaw (hap1 2023)[IGV] Ara ararauna GCA_028858755.1_bAraAra1.hap1 SAMN33059336 PRJNA931362 2023-02-24
35 blue-and-yellow macaw (hap2 2023)[IGV] Ara ararauna GCA_028858555.1_bAraAra1.hap2 SAMN33059336 PRJNA931363 2023-02-24
36 blue-crowned manakin[IGV] Lepidothrix coronata GCF_001604755.1_Lepidothrix_coronata-1.0 SAMN04274560 PRJNA300662 2016-03-31
37 blue-fronted amazon (AMXYW 2021)[IGV] Amazona aestiva GCA_017639355.1_Aaes_hic SAMN17376699 PRJNA679636 2021-03-30
38 blue-fronted amazon (FVVF132 2015)[IGV] Amazona aestiva GCA_001420675.1_ASM142067v1 SAMN04014659 PRJNA294082 2015-10-30
39 Bourke's parrot (Australia Nb327-2 2023)[IGV] Neopsephotus bourkii GCF_033783945.1_CSIRO-AGI_Nbou_v1 SAMN37631362 PRJNA1022850 2023-11-17
40 Brazilian merganser (hap1 2024)[IGV] Mergus octosetaceus GCA_036873955.1_bMerOct1.hap1 SAMN39710078 PRJNA1072166 2024-02-26
41 Brazilian merganser (hap2 2024)[IGV] Mergus octosetaceus GCA_036850655.1_bMerOct1.hap2 SAMN39710078 PRJNA1072165 2024-02-26
42 brown eared-pheasant[IGV] Crossoptilon mantchuricum GCA_019593555.1_cma1 SAMN15899056 PRJNA659158 2021-08-13
43 brown headed cowbird (v1.1 BHLD 08-10-18 2022)[IGV] Molothrus ater GCF_012460135.2_BPBGC_Mater_1.1 SAMN14074414 PRJNA606972 2022-10-11
44 brown kiwi[IGV] Apteryx mantelli mantelli GCF_001039765.1_AptMant0 SAMEA2560515 PRJEB6383 2015-06-21
45 brown roatelo[IGV] Mesitornis unicolor GCF_000695765.1_ASM69576v1 SAMN02339298 PRJNA212899 2014-06-02
46 budgerigar (maternal 2020)[IGV] Melopsittacus undulatus GCA_012275265.1_bMelUnd1.mat SAMN12623090 PRJNA561964 2020-04-13
47 budgerigar (maternal Z 2020 refseq)[IGV] Melopsittacus undulatus GCF_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13
48 budgerigar (paternal 2020)[IGV] Melopsittacus undulatus GCA_012275275.1_bMelUnd1.pat SAMN12623090 PRJNA561963 2020-04-13
49 budgerigar (v6.3 2021 WashU)[IGV] Melopsittacus undulatus GCF_000238935.1_Melopsittacus_undulatus_6.3 SAMN02981360 PRJNA72527 2012-01-02
50 burrowing owl[IGV] Athene cunicularia GCF_003259725.1_athCun1 SAMN08961563 PRJNA431202 2018-06-21
51 California black rail (168171201 alternate hap 2022)[IGV] Laterallus jamaicensis coturniculus GCA_022605925.1_bLatJam1.0.a SAMN24505262 PRJNA794173 2022-03-17
52 California black rail (168171201 primary hap 2022)[IGV] Laterallus jamaicensis coturniculus GCA_022605575.1_bLatJam1.0.p SAMN24505262 PRJNA794174 2022-03-17
53 California condor (v2 813 2022 refseq)[IGV] Gymnogyps californianus GCF_018139145.2_ASM1813914v2 SAMN18477433 PRJNA718609 2022-09-01
54 California quail (MVZ:Bird:193975 alternate hap 2022)[IGV] Callipepla californica brunnescens GCA_023055725.1_bCalCai1.0.a SAMN26894057 PRJNA819181 2022-04-19
55 California quail (MVZ:Bird:193975 primary hap 2022)[IGV] Callipepla californica brunnescens GCA_023055505.1_bCalCai1.0.p SAMN26894057 PRJNA819182 2022-05-05
56 California towhee (CALT 2023)[IGV] Melozone crissalis GCF_028551555.1_PUWL_Pcris_2 SAMN32379461 PRJNA915193 2023-02-08
57 Canada goose (SJ_97 2019)[IGV] Branta canadensis GCA_006130075.1_GSC_cangoose_1.0 SAMN11031539 PRJNA524684 2019-06-05
58 carmine bee-eater (2019)[IGV] Merops nubicus GCA_009819595.1_bMerNub1.pri SAMN12621035 PRJNA561894 2019-12-31
59 carmine bee-eater alternate hap pseudohaplotype 2019)[IGV] Merops nubicus GCA_009819585.1_bMerNub1.alt SAMN12621035 PRJNA561895 2019-12-23
60 chaffinch (primary hap 2023)[IGV] Fringilla coelebs GCA_963513975.1_bFriCoe1.1 SAMEA9359753 PRJEB66368 2023-09-28
61 chicken (Cobb bGalGal5 alternate hap 2022)[IGV] Gallus gallus GCA_027408205.1_bGalGal5.alt SAMN28017485 PRJNA838371 2022-12-27
62 chicken (Cobb bGalGal5 primary hap 2022)[IGV] Gallus gallus GCA_027408225.1_bGalGal5.pri SAMN28017485 PRJNA838370 2022-12-28
63 chicken (GRCg6a 2018)[IGV] Gallus gallus GCF_000002315.6_GRCg6a SAMN02981218 PRJNA13342 2018-03-27
64 chicken (Huxu 2023)[IGV] Gallus gallus GCA_024206055.2_ASM2420605v2 SAMN20717417 PRJNA693184 2023-02-09
65 chicken (Ross bGalGal4 alternate hap 2022)[IGV] Gallus gallus GCA_027408255.1_bGalGal4.alt SAMN28017486 PRJNA838368 2022-12-27
66 chicken (Ross bGalGal4 primary hap 2023)[IGV] Gallus gallus GCA_027557775.1_bGalGal4.pri SAMN28017486 PRJNA838369 2023-01-03
67 chicken white leghorn layer X broiler (broiler haplotype 2021 v2 2021)[IGV] Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b SAMN15960293 PRJNA660757 2021-01-19
68 chicken white leghorn layer X broiler (leghorn haplotype v2 2021)[IGV] Gallus gallus GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-10-01
69 Chilean tinamou[IGV] Nothoprocta perdicaria GCF_003342845.1_notPer1 SAMN08476459 PRJNA433110 2018-07-26
70 chimney swift (M959 v1.1 2014)[IGV] Chaetura pelagica GCF_000747805.2_ChaPel_1.1 SAMN03018471 PRJNA210808 2014-09-04
71 chuck-will's-widow (BGI_N321 v2 2014)[IGV] Antrostomus carolinensis GCF_000700745.2_ASM70074v2 SAMN02318612 PRJNA212888 2014-06-10
72 collared flycatcher[IGV] Ficedula albicollis GCF_000247815.1_FicAlb1.5 SAMN02981387 PRJNA75089 2013-06-27
73 common canary (domestic yellow sc_yellow_7_cibi 2019)[IGV] Serinus canaria GCF_007115625.1_cibio_Scana_2019 SAMN12017177 PRJNA548289 2019-07-18
74 common canary (serCan28SL12 2022)[IGV] Serinus canaria GCF_022539315.1_serCan2020 SAMN25990113 PRJNA807488 2022-08-25
75 common cuckoo (bCucCan1 alternate hap 2021)[IGV] Cuculus canorus GCA_017976305.1_bCucCan1.alt SAMN12629508 PRJNA562016 2021-04-15
76 common cuckoo (bCucCan1 primary hap 2021 refseq)[IGV] Cuculus canorus GCF_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15
77 common mallard (Pekin duck 2017)[IGV] Anas platyrhynchos platyrhynchos GCA_002743455.1_CAU_duck1.0 SAMN07569716 PRJNA403935 2017-11-03
78 common myna (bArcTri1 alternate hap 2023)[IGV] Acridotheres tristis GCA_027559525.1_bAcrTri1.alt SAMN28454388 PRJNA839506 2023-01-03
79 common myna (bArcTri1 primary hap 2023)[IGV] Acridotheres tristis GCA_027559615.1_bAcrTri1.pri SAMN28454388 PRJNA839507 2023-01-09
80 common starling[IGV] Sturnus vulgaris GCF_001447265.1_Sturnus_vulgaris-1.0 SAMN04029017 PRJNA293892 2015-11-20
81 common swift (bApuApu2 alternate hap 2021)[IGV] Apus apus GCA_020740585.1_bApuApu2.alt.cur SAMN22785356 PRJNA776337 2021-11-03
82 common swift (bApuApu2 primary hap 2021 refseq)[IGV] Apus apus GCF_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04
83 common tern (2019)[IGV] Sterna hirundo GCA_009819605.1_bSteHir1.pri SAMN12369541 PRJNA558062 2019-12-31
84 common tern (alternate hap 2019)[IGV] Sterna hirundo GCA_009819645.1_bSteHir1.alt SAMN12369541 PRJNA558063 2019-12-23
85 common yellowthroat (2019)[IGV] Geothlypis trichas GCA_009764595.1_bGeoTri1.pri SAMN12631222 PRJNA589703 2019-12-19
86 common yellowthroat (alternate hap 2019)[IGV] Geothlypis trichas GCA_009764545.1_bGeoTri1.alt SAMN12631222 PRJNA589704 2019-12-18
87 crested ibis (BGI_Y956 2014)[IGV] Nipponia nippon GCF_000708225.1_ASM70822v1 SAMN02596464 PRJNA232572 2014-06-16
88 cuckoo roller (BGI_N330 2014)[IGV] Leptosomus discolor GCF_000691785.1_ASM69178v1 SAMN02333687 PRJNA212897 2014-05-23
89 cuckoo roller (hap1 2023)[IGV] Leptosomus discolor GCA_034619455.1_bLepDis1.hap1 SAMN37284216 PRJNA1013356 2023-12-27
90 cuckoo roller (hap2 2023)[IGV] Leptosomus discolor GCA_034619465.1_bLepDis1.hap2 SAMN37284216 PRJNA1013355 2023-12-27
91 Dalmatian pelican (alternate hap 2023)[IGV] Pelecanus crispus GCA_030449815.1_bPelCri1.alt SAMN35784560 PRJNA984932 2023-07-13
92 Dalmatian pelican (BGI_N334 2014)[IGV] Pelecanus crispus GCF_000687375.1_ASM68737v1 SAMN02339887 PRJNA212901 2014-05-09
93 Dalmatian pelican (primary hap 2023)[IGV] Pelecanus crispus GCA_030463565.1_bPelCri1.pri SAMN35784560 PRJNA984931 2023-07-18
94 Downy woodpecker (alternate hap 2020)[IGV] Dryobates pubescens GCA_014839825.1_bDryPub1.alt SAMN12629497 PRJNA561992 2020-09-30
95 Downy woodpecker (primary hap 2020)[IGV] Dryobates pubescens GCF_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02
96 East African grey crowned-crane[IGV] Balearica regulorum gibbericeps GCF_000709895.1_ASM70989v1 SAMN02318095 PRJNA212879 2014-06-25
97 East African grey crowned-crane (alternate hap 2020)[IGV] Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt SAMN12615749 PRJNA561891 2020-02-24
98 East African grey crowned-crane (bBalReg1 2020)[IGV] Balearica regulorum gibbericeps GCA_011004875.1_bBalReg1.pri SAMN12615749 PRJNA561890 2020-03-05
99 Eastern black-eared wheatear (GR-GAL-2019-014 2023)[IGV] Oenanthe melanoleuca GCF_029582105.1_OMel1.0 SAMN33408179 PRJNA937434 2023-04-06
100 emperor penguin[IGV] Aptenodytes forsteri GCF_000699145.1_ASM69914v1 SAMN02596600 PRJNA235982 2014-06-06
101 emu (2018)[IGV] Dromaius novaehollandiae GCF_003342905.1_droNov1 SAMN08476457 PRJNA433110 2018-07-26
102 emu (hap1 2024)[IGV] Dromaius novaehollandiae GCF_036370855.1_bDroNov1.hap1 SAMN39262816 notFound 2024-02-26
103 emu (hap2 2024)[IGV] Dromaius novaehollandiae GCA_036417515.1_bDroNov1.hap2 SAMN39262816 PRJNA1061217 2024-02-26
104 emu (v2 ZJU1.0 2023)[IGV] Dromaius novaehollandiae GCA_016128335.2_ZJU2.0 SAMN15183959 PRJNA638233 2023-01-13
105 Eurasian nightjar (alternate hap 2021)[IGV] Caprimulgus europaeus GCA_907165095.1_bCapEur3.1_alternate_haplotype SAMEA7524394 PRJEB44541 2021-05-15
106 Eurasian nightjar (primary hap 2021)[IGV] Caprimulgus europaeus GCA_907165065.1_bCapEur3.1 SAMEA7524394 PRJEB44540 2021-05-17
107 Eurasian tree sparrow[IGV] Passer montanus GCF_014805655.1_ASM1480565v1 SAMN07998528 PRJNA417520 2020-09-30
108 European golden plover (bPluApr1 primary hap 2021)[IGV] Pluvialis apricaria GCA_017639485.1_bPluApr1.pri SAMN18353970 PRJNA715924 2021-03-30
109 European robin (alternate hap 2021)[IGV] Erithacus rubecula GCA_903797565.2_bEriRub2.2_alternate_haplotype SAMEA4760689 PRJEB38657 2021-03-21
110 European robin (primary hap 2021)[IGV] Erithacus rubecula GCA_903797595.2_bEriRub2.2 SAMEA4760689 PRJEB38658 2021-05-03
111 European shag (alternate hap 2023)[IGV] Phalacrocorax aristotelis GCA_949628205.1_bGulAri2.1_alternate_haplotype SAMEA10059652 PRJEB60538 2023-04-09
112 European shag (primary hap 2023)[IGV] Phalacrocorax aristotelis GCA_949628215.1_bGulAri2.1 SAMEA10059652 PRJEB60539 2023-04-08
113 European turtle dove (v1.2 2021)[IGV] Streptopelia turtur GCA_901699155.2_bStrTur1.2 SAMEA994735 PRJEB32724 2021-05-17
114 European turtle dove (v1.2 alternate hap 2021)[IGV] Streptopelia turtur GCA_901699165.2_bStrTur1.2_alternate_haplotype SAMEA994735 PRJEB32725 2021-04-15
115 Eurpoean golden plover (bPluApr1 alternate hap 2021)[IGV] Pluvialis apricaria GCA_017639475.1_bPluApr1.alt SAMN18353970 PRJNA715923 2021-03-30
116 garden warbler (bSylBor1 alternate hap 2020)[IGV] Sylvia borin GCA_014839765.1_bSylBor1.alt SAMN12618613 PRJNA561946 2020-09-30
117 garden warbler (bSylBor1 primary hap 2020)[IGV] Sylvia borin GCA_014839755.1_bSylBor1.pri SAMN12618613 PRJNA561945 2020-10-02
118 golden eagle (v1.4 2021)[IGV] Aquila chrysaetos chrysaetos GCF_900496995.4_bAquChr1.4 SAMEA994725 PRJEB27699 2021-03-26
119 golden eagle (v1.4 alternate hap 2021)[IGV] Aquila chrysaetos chrysaetos GCA_902153765.2_bAquChr1.4_alternate_haplotype SAMEA994725 PRJEB33298 2021-03-26
120 golden pheasant[IGV] Chrysolophus pictus GCA_003413605.1_Chrysolophus_pictus_GenomeV1.0 SAMN02980944 PRJNA257945 2018-08-20
121 golden-collared manakin[IGV] Manacus vitellinus GCF_001715985.3_ASM171598v3 SAMN02299332 PRJNA335611 2019-07-03
122 great cormorant (BGI_N336 2014)[IGV] Phalacrocorax carbo GCF_000708925.1_ASM70892v1 SAMN02339889 PRJNA212903 2014-06-17
123 great cormorant (primary hap 2024)[IGV] Phalacrocorax carbo GCA_963921805.1_bPhaCar2.1 SAMEA8228692 PRJEB71801 2024-02-09
124 great cormorant (primary hap 2024)[IGV] Phalacrocorax carbo GCF_963921805.1_bPhaCar2.1 SAMEA8228692 PRJEB71801 2024-02-09
125 great potoo (bNycGra1 alternate hap 2020)[IGV] Nyctibius grandis GCA_013368595.1_bNycGra1.alt SAMN12622411 PRJNA562021 2020-06-23
126 great potoo (bNycGra1 primary hap 2020)[IGV] Nyctibius grandis GCA_013368605.1_bNycGra1.pri SAMN12622411 PRJNA562020 2020-06-23
127 great tit[IGV] Parus major GCF_001522545.3_Parus_major1.1 SAMN03083587 PRJNA208335 2019-01-15
128 greater honeyguide (239-I01 2023)[IGV] Indicator indicator GCF_027791375.1_UM_Iind_1.1 SAMN31686289 PRJNA900296 2023-01-13
129 greater prairie chicken[IGV] Tympanuchus cupido pinnatus GCA_001870855.1_T_cupido_pinnatus_GPC_3440_v1 SAMN05433571 PRJNA330991 2016-11-07
130 greater rhea[IGV] Rhea americana GCA_003343005.1_rheAme1 SAMN08476460 PRJNA433110 2018-07-26
131 greater sage-grouse[IGV] Centrocercus urophasianus GCF_019232065.1_USGS_Curo_1.0 SAMN20124253 PRJNA734947 2021-07-15
132 green peafowl[IGV] Pavo muticus GCA_016647715.1_ASM1664771v1 SAMN15486085 PRJNA644939 2021-01-15
133 grey parrot (MU2MI4XJKV 2020)[IGV] Psittacus erithacus GCA_009867235.1_ASM986723v1 SAMN12165726 PRJNA551771 2020-01-14
134 ground parrot (Strahan ANWC-B61680 2023)[IGV] Pezoporus wallicus GCF_028554395.1_APGP_CSIRO_Pwel_v1 SAMN32236640 PRJNA912258 2023-02-08
135 gyrfalcon (bFalRus1 alternate hap 2020)[IGV] Falco rusticolus GCA_015220155.1_bFalRus1.alt SAMN12629496 PRJNA561989 2020-11-02
136 gyrfalcon (bFalRus1 primary hap 2020)[IGV] Falco rusticolus GCF_015220075.1_bFalRus1.pri SAMN12629496 PRJNA561988 2020-11-03
137 Harpy eagle (bHarHar1 alternate hap 2022)[IGV] Harpia harpyja GCA_026419925.1_bHarHar1 SAMN31530492 PRJNA896140 2022-11-25
138 Harpy eagle (primary hap 2022 refseq)[IGV] Harpia harpyja GCF_026419915.1_bHarHar1_primary_haplotype SAMN31530492 PRJNA896141 2022-11-27
139 Hawaiian crow (bCorHaw1 alternate hap 2021)[IGV] Corvus hawaiiensis GCA_020740675.1_bCorHaw1.alt.cur SAMN22550278 PRJNA774316 2021-11-03
140 Hawaiian crow (bCorHaw1 primary hap 2021 refseq)[IGV] Corvus hawaiiensis GCF_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04
141 helmeted guineafowl[IGV] Numida meleagris GCF_002078875.1_NumMel1.0 SAMN05969731 PRJNA352321 2017-06-01
142 hoatzin (BGI_N306 2014)[IGV] Opisthocomus hoazin GCF_000692075.1_ASM69207v1 SAMN02302474 PRJNA212873 2014-05-19
143 hoatzin (hap1 2023)[IGV] Opisthocomus hoazin GCA_030867145.1_bOpiHoa1.hap1 SAMN37055462 PRJNA1007258 2023-08-24
144 hoatzin (hap2 2023)[IGV] Opisthocomus hoazin GCA_030867165.1_bOpiHoa1.hap2 SAMN37055462 PRJNA1007257 2023-08-24
145 hooded crow (v6 S_Up_H32 2022)[IGV] Corvus cornix cornix GCF_000738735.6_ASM73873v6 SAMN02143031 PRJNA192205 2022-04-01
146 house finch (bHaeMex1 alternate hap 2022)[IGV] Haemorhous mexicanus GCA_027406555.1_bHaeMex1.alt SAMN28453576 PRJNA839498 2022-12-27
147 house finch (bHaeMex1 primary hap 2022 refseq)[IGV] Haemorhous mexicanus GCF_027477595.1_bHaeMex1.pri SAMN28453576 PRJNA839499 2022-12-29
148 house sparrow (hap1 2024)[IGV] Passer domesticus GCA_036417665.1_bPasDom1.hap1 SAMN39255856 PRJNA1064421 2024-02-07
149 house sparrow (hap1 2024)[IGV] Passer domesticus GCF_036417665.1_bPasDom1.hap1 SAMN39255856 PRJNA1064421 2024-02-07
150 House sparrow (hap2 2024)[IGV] Passer domesticus GCA_036417895.1_bPasDom1.hap2 SAMN39255856 PRJNA1064420 2024-02-07
151 Humboldt's penguin (bSphHub1 alternate hap 2022)[IGV] Spheniscus humboldti GCA_027474345.1_bSphHub1.alt SAMN28408465 PRJNA838344 2022-12-27
152 Humboldt's penguin (bSphHub1 primary hap 2022)[IGV] Spheniscus humboldti GCA_027474245.1_bSphHub1.pri SAMN28408465 PRJNA838343 2022-12-28
153 hyacinth macaw (LEKZKR9XQ3 2022)[IGV] Anodorhynchus hyacinthinus GCA_009936445.2_ASM993644v2 SAMN09689126 PRJNA481562 2022-07-21
154 jackdaw[IGV] Coloeus monedula GCA_013407035.1_ASM1340703v1 SAMN14646012 PRJNA626609 2020-07-13
155 Japanese quail[IGV] Coturnix japonica GCF_001577835.2_Coturnix_japonica_2.1 SAMN03989050 PRJNA292031 2016-03-01
156 kagu (bRhyJub1 alternate hap 2023)[IGV] Rhynochetos jubatus GCA_027595965.1_bRhyJub1.alt SAMN31802033 PRJNA916496 2023-01-06
157 kagu (bRhyJub1 primary hap 2023)[IGV] Rhynochetos jubatus GCA_027574665.1_bRhyJub1.pri SAMN31802033 PRJNA916495 2023-01-09
158 kakapo (Jane alternate hap 2019)[IGV] Strigops habroptila GCA_004011185.1_bStrHab1_v1.h SAMN09948751 PRJNA489134 2019-01-10
159 kakapo (Jane v2 2020 refseq)[IGV] Strigops habroptila GCF_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04
160 kea[IGV] Nestor notabilis GCF_000696875.1_ASM69687v1 SAMN02339299 PRJNA212900 2014-06-05
161 killdeer[IGV] Charadrius vociferus GCF_000708025.1_ASM70802v2 SAMN02296710 PRJNA212867 2014-08-05
162 king vulture (hap1 2024)[IGV] Sarcoramphus papa GCA_037962945.1_bSarPap1.hap1 SAMN40647026 PRJNA1093106 2024-04-04
163 king vulture (hap2 2024)[IGV] Sarcoramphus papa GCA_037950955.1_bSarPap1.hap2 SAMN40647026 PRJNA1093107 2024-04-04
164 lammergeier (bGypBar2 alternate hap 2023)[IGV] Gypaetus barbatus GCA_028017155.1_bGypBar2.alt SAMN32256411 PRJNA912842 2023-01-26
165 lammergeier (bGypBar2 primary hap 2023)[IGV] Gypaetus barbatus GCA_028022735.1_bGypBar2.pri SAMN32256411 PRJNA912841 2023-01-31
166 lance-tailed manakin (2020)[IGV] Chiroxiphia lanceolata GCF_009829145.1_bChiLan1.pri SAMN12620979 PRJNA561943 2020-01-03
167 lance-tailed manakin (alternate hap 2020)[IGV] Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt SAMN12620979 PRJNA561944 2020-01-03
168 lanner falcon (bFalBia1 alternate hap 2022)[IGV] Falco biarmicus GCA_023634305.1_bFalBia1.alt SAMN28688289 PRJNA842827 2022-06-01
169 lanner falcon (bFalBia1 primary hap 2022 refseq)[IGV] Falco biarmicus GCF_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02
170 lesser black-backed gull (primary hap 2024)[IGV] Larus fuscus GCA_963932225.1_bLarFus1.1 SAMEA112468039 PRJEB72328 2024-02-07
171 lesser kestrel (alternate hap 2021)[IGV] Falco naumanni GCA_017639645.1_bFalNau1.mat SAMN16870685 PRJNA702665 2021-03-30
172 lesser kestrel (v2 2021)[IGV] Falco naumanni GCF_017639655.2_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30
173 lesser prairie-chicken (F22 2022)[IGV] Tympanuchus pallidicinctus GCF_026119805.1_pur_lepc_1.0 SAMN31408225 PRJNA893009 2022-11-10
174 lesser rhea (206185 2018)[IGV] Rhea pennata GCA_003342835.1_rhePen1 SAMN08476461 PRJNA433110 2018-07-26
175 lesser rhea (bPtePen1 alternate hap 2023)[IGV] Rhea pennata GCA_028389885.1_bPtePen1.alt SAMN32606345 PRJNA918802 2023-02-01
176 lesser rhea (bPtePen1 primary hap 2023 refseq)[IGV] Rhea pennata GCF_028389875.1_bPtePen1.pri SAMN32606345 PRJNA918801 2023-02-06
177 little egret[IGV] Egretta garzetta GCF_000687185.1_ASM68718v1 SAMN02596466 PRJNA232959 2014-05-09
178 long-tailed duck (primary hap 2024)[IGV] Clangula hyemalis GCA_963989345.1_bClaHye2.1 SAMEA112468035 PRJEB73781 2024-03-14
179 long-tailed hermit (PSU5 alternate hap 2022)[IGV] Phaethornis superciliosus GCA_023637925.1_DD_ASM_B1a SAMN23532249 PRJNA785156 2022-06-01
180 long-tailed hermit (PSU5 primary hap 2022)[IGV] Phaethornis superciliosus GCA_023637945.1_DD_ASM_B1 SAMN23532249 PRJNA785144 2022-06-01
181 Macqueen's bustard (BGI_N324 2014)[IGV] Chlamydotis macqueenii GCF_000695195.1_ASM69519v1 SAMN02324157 PRJNA212891 2014-06-02
182 Macqueen's bustard (maternal 2024)[IGV] Chlamydotis macqueenii GCA_036417535.1_bChlMac1.mat SAMN39296383 PRJNA1064422 2024-02-07
183 Macqueen's bustard (paternal 2024)[IGV] Chlamydotis macqueenii GCA_036418225.1_bChlMac1.pat SAMN39296383 PRJNA1064423 2024-02-07
184 maguari stork (bCicMag1 alternate hap 2021)[IGV] Ciconia maguari GCA_017639665.1_bCicMag1.alt SAMN18353822 PRJNA715732 2021-03-30
185 maguari stork (bCicMag1 primary hap 2021)[IGV] Ciconia maguari GCA_017639555.1_bCicMag1.pri SAMN18353822 PRJNA715733 2021-03-30
186 mallard CAU_Wild1.0[IGV] Anas platyrhynchos GCA_008746955.1_CAU_Wild1.0 SAMN12287667 PRJNA554956 2019-10-07
187 mallard PBH1.5[IGV] Anas platyrhynchos GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 SAMN10245527 PRJNA496533 2018-11-29
188 mallard ZJU1.0[IGV] Anas platyrhynchos GCF_015476345.1_ZJU1.0 SAMN15588841 PRJNA636121 2020-11-23
189 Mariana crow[IGV] Corvus kubaryi GCF_017639235.1_C.kubaryi_AGA036_p1.0 SAMN16883221 PRJNA680658 2021-03-30
190 Mauritius kestrel (alternate hap 2023)[IGV] Falco punctatus GCA_963210275.1_bFalPun1.1_alternate_haplotype SAMEA14356472 PRJEB65027 2023-08-19
191 Mauritius kestrel (primary hap 2023)[IGV] Falco punctatus GCA_963210335.1_bFalPun1.1 SAMEA14356472 PRJEB65028 2023-08-19
192 Mauritius parakeet (alternate hap 2023)[IGV] Psittacula echo GCA_963243765.1_bPsiEch3.1_alternate_haplotype SAMEA12361725 PRJEB65272 2023-08-20
193 Mauritius parakeet (primary hap 2023)[IGV] Psittacula echo GCA_963264785.1_bPsiEch3.1 SAMEA12361725 PRJEB65273 2023-08-20
194 medium ground-finch[IGV] Geospiza fortis GCF_000277835.1_GeoFor_1.0 SAMN00839579 PRJNA156703 2012-07-25
195 monk parakeet[IGV] Myiopsitta monachus GCA_017639245.1_MMon_1.0 SAMN16846069 PRJNA679636 2021-03-30
196 mute swan (bCygOlo1 v2 alternate hap 2021)[IGV] Cygnus olor GCA_009769485.2_bCygOlo1.alt.v2 SAMN12621369 PRJNA561961 2021-03-30
197 mute swan (bCygOlo1 v2 primary hap 2021)[IGV] Cygnus olor GCF_009769625.2_bCygOlo1.pri.v2 SAMN12621369 PRJNA561960 2021-03-31
198 Nelson's sparrow (bAmmNel1 alternate hap 2023)[IGV] Ammospiza nelsoni GCA_027579665.1_bAmmNel1.alt SAMN28421656 PRJNA839457 2023-01-06
199 Nelson's sparrow (bAmmNel1 primary hap 2023 refseq)[IGV] Ammospiza nelsoni GCF_027579445.1_bAmmNel1.pri SAMN28421656 PRJNA839456 2023-01-09
200 New Caledonian crow (2019)[IGV] Corvus moneduloides GCF_009650955.1_bCorMon1.pri SAMN12368441 PRJNA560983 2019-11-14
201 New Caledonian crow (alternate hap 2019)[IGV] Corvus moneduloides GCA_009651025.1_bCorMon1.alt SAMN12368441 PRJNA560982 2019-11-12
202 Nicobar pigeon (hap1 2024)[IGV] Caloenas nicobarica GCA_036013445.1_bCalNic1.hap1 SAMN39256628 PRJNA1061158 2024-01-26
203 Nicobar pigeon (hap2 2024)[IGV] Caloenas nicobarica GCA_036010745.1_bCalNic1.hap2 SAMN39256628 PRJNA1061159 2024-01-24
204 night parrot (Australia 2023)[IGV] Pezoporus occidentalis GCF_034315485.1_CSIRO_AGI_Poc_V1 SAMN38375542 PRJNA1044171 2023-12-12
205 North Island brown kiwi (hap1 2024)[IGV] Apteryx mantelli GCA_036417845.1_bAptMan1.hap1 SAMN39257886 PRJNA1061176 2024-02-06
206 North Island brown kiwi (hap2 2024)[IGV] Apteryx mantelli GCA_036417975.1_bAptMan1.hap2 SAMN39257886 PRJNA1061175 2024-02-06
207 northern bobwhite[IGV] Colinus virginianus GCA_008692595.2_Cv_LA_2.0 SAMN09044008 PRJNA454855 2021-04-29
208 northern fulmar[IGV] Fulmarus glacialis GCF_000690835.1_ASM69083v1 SAMN02324803 PRJNA212894 2014-05-13
209 northern gannet (hap1 2023)[IGV] Morus bassanus GCA_031468805.1_bMorBas2.hap1 SAMN37096299 PRJNA1009680 2023-09-15
210 northern gannet (hap2 2023)[IGV] Morus bassanus GCA_031468815.1_bMorBas2.hap2 SAMN37096299 PRJNA1009681 2023-09-15
211 northern goshawk (bAccGen1 primary hap v1 2022 refseq)[IGV] Accipiter gentilis GCF_929443795.1_bAccGen1.1 SAMEA8235650 PRJEB50702 2022-02-09
212 northern goshawk (bAccGen1 primary hap v2 2022 genbank)[IGV] Accipiter gentilis GCA_929443795.2_bAccGen1.2 SAMEA8235650 PRJEB50702 2022-10-27
213 northern goshawk (bAccGen1 v1 alternate hap 2022)[IGV] Accipiter gentilis GCA_929447715.1_bAccGen1.1_alternate_haplotype SAMEA8235650 PRJEB50703 2022-02-13
214 northern pintail (primary hap 2024)[IGV] Anas acuta GCA_963932015.1_bAnaAcu1.1 SAMEA112468036 PRJEB72290 2024-02-07
215 Obi paradise-crow (lycPyr6 2020)[IGV] Lycocorax pyrrhopterus obiensis GCA_014706295.1_ASM1470629v1 SAMN15881065 PRJNA604967 2020-09-23
216 Okarito brown kiwi[IGV] Apteryx rowi GCF_003343035.1_aptRow1 SAMN08476454 PRJNA433110 2018-07-26
217 Oriental scops-owl (oso-nibr-517 2020)[IGV] Otus sunia GCA_010365825.1_OtuSun1.0 SAMN08398467 PRJNA431699 2020-02-04
218 peregrine falcon (bFalPer1 alternate hap 2022)[IGV] Falco peregrinus GCA_023634185.1_bFalPer1.alt SAMN28688290 PRJNA842833 2022-06-01
219 peregrine falcon (bFalPer1 primary hap 2022 refseq)[IGV] Falco peregrinus GCF_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02
220 peregrine falcon (BGI 2013)[IGV] Falco peregrinus GCF_000337955.1_F_peregrinus_v1.0 SAMN02981425 PRJNA159791 2013-02-05
221 pin-tailed whydah (BioBank_ID:100142 2022)[IGV] Vidua macroura GCF_024509145.1_ASM2450914v1 SAMN27279399 PRJNA822827 2022-08-03
222 pink pigeon (alternate hap 2023)[IGV] Nesoenas mayeri GCA_963082445.1_bNesMay2.1_alternate_haplotype SAMEA12922160 PRJEB64782 2023-08-08
223 pink pigeon (primary hap 2023)[IGV] Nesoenas mayeri GCA_963082525.1_bNesMay2.1 SAMEA12922160 PRJEB64783 2023-08-09
224 plumbeous ibis (bTheCae1 alternate hap 2021)[IGV] Theristicus caerulescens GCA_020745805.1_bTheCae1.alt.cur SAMN22550094 PRJNA774321 2021-11-05
225 plumbeous ibis (bTheCae1 primary hap 2021)[IGV] Theristicus caerulescens GCA_020745775.1_bTheCae1.pri.cur SAMN22550094 PRJNA774297 2021-11-05
226 Puerto Rican parrot (LU 182127 2020)[IGV] Amazona vittata GCA_000332375.2_ASM33237v2 SAMN02981494 PRJNA171587 2020-08-28
227 razorbill (2006_11_07_Graehlm_vinge_78 2019)[IGV] Alca torda GCA_008658365.1_bAlcTor1_primary SAMN12292087 PRJNA554520 2019-10-10
228 razorbill (alternate hap 2006_11_07_Graehlm_vinge_78 2019)[IGV] Alca torda GCA_008658355.1_bAlcTor1_alternate SAMN12292087 PRJNA554521 2019-09-23
229 red-backed fairy wren (Western Australia 2023)[IGV] Malurus melanocephalus GCF_030028575.1_MMel_1.1 SAMN33278196 PRJNA934711 2023-05-17
230 red-crested turaco (2019)[IGV] Tauraco erythrolophus GCA_009769465.1_bTauEry1.pri SAMN12621036 PRJNA561947 2019-12-19
231 red-crested turaco (alternate hap 2019)[IGV] Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt SAMN12621036 PRJNA561948 2019-12-18
232 red-fronted tinkerbird (bPogPus1 alternate hap 2020)[IGV] Pogoniulus pusillus GCA_015220175.1_bPogPus1.alt SAMN15098508 PRJNA637954 2020-11-02
233 red-fronted tinkerbird (bPogPus1 primary hap 2020)[IGV] Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri SAMN15098508 PRJNA637953 2020-11-03
234 Red-fronted tinkerbird (bPogPus1 primary hap 2020)[IGV] Pogoniulus pusillus GCF_015220805.1_bPogPus1.pri SAMN15098508 PRJNA637953 2020-11-03
235 red-legged partridge[IGV] Alectoris rufa GCA_019345075.1_ASM1934507v1 SAMN16083939 PRJNA662415 2021-07-26
236 red-legged seriema (2019)[IGV] Cariama cristata GCA_009819825.1_bCarCri1.pri SAMN12614807 PRJNA561892 2019-12-31
237 red-legged seriema (alternate hap 2019)[IGV] Cariama cristata GCA_009819485.1_bCarCri1.alt SAMN12614807 PRJNA561893 2019-12-23
238 red-throated loon (BGI_N328 2014)[IGV] Gavia stellata GCF_000690875.1_ASM69087v1 SAMN02324832 PRJNA212895 2014-05-13
239 red-throated loon (hap1 2023)[IGV] Gavia stellata GCA_030936125.1_bGavSte3.hap1 SAMN37096312 PRJNA1008846 2023-08-30
240 red-throated loon (hap2 2023 refseq)[IGV] Gavia stellata GCF_030936135.1_bGavSte3.hap2 SAMN37096312 PRJNA1008847 2023-08-30
241 red-winged blackbird (BioBank_ID:100140 2023)[IGV] Agelaius phoeniceus GCF_020745825.1_Agelaius_phoeniceus_1.1 SAMN19590559 PRJNA735624 2023-03-15
242 rhinoceros hornbill[IGV] Buceros rhinoceros silvestris GCF_000710305.1_ASM71030v1 SAMN02318191 PRJNA212887 2014-06-25
243 rifleman (bAcaChl1 alternate hap 2021)[IGV] Acanthisitta chloris GCA_016880875.1_bAcaChl1.alt SAMN16442762 PRJNA561955 2021-02-10
244 rifleman (bAcaChl1 primary hap 2021)[IGV] Acanthisitta chloris GCA_016904835.1_bAcaChl1.pri SAMN16442762 PRJNA561954 2021-02-17
245 ring-necked pheasant[IGV] Phasianus colchicus GCF_004143745.1_ASM414374v1 SAMN08888240 PRJNA449162 2019-02-06
246 rock pigeon (Danish tumbler 2013 BGI)[IGV] Columba livia GCF_000337935.1_Cliv_1.0 SAMN02981415 PRJNA167554 2013-02-11
247 rock pigeon (racing homer bColLiv1 2024)[IGV] Columba livia GCA_036010775.2_bColLiv1.mat.v2 SAMN38891892 PRJNA1054132 2024-04-08
248 rock pigeon (racing homer bColLiv1 2024)[IGV] Columba livia GCA_036013475.2_bColLiv1.pat.W.v2 SAMN38891892 PRJNA1054131 2024-04-08
249 rock pigeon (racing homer bColLiv1 2024)[IGV] Columba livia GCF_036013475.1_bColLiv1.pat.W.v2 SAMN38891892 PRJNA1054131 2024-04-08
250 rock pigeon (racing homer maternal 2024)[IGV] Columba livia GCA_036010775.1_bColLiv1.mat SAMN38891892 PRJNA1054132 2024-02-06
251 rock pigeon (racing homer paternal W 2024)[IGV] Columba livia GCA_036013475.1_bColLiv1.pat.W SAMN38891892 PRJNA1054131 2024-01-31
252 rock ptarmigan (bLagMut1 alternate hap 2022)[IGV] Lagopus muta GCA_023344045.1_bLagMut1_alternate SAMN25144835 PRJNA836585 2022-05-12
253 rock ptarmigan (primary hap 2022 refseq)[IGV] Lagopus muta GCF_023343835.1_bLagMut1_primary SAMN25144835 PRJNA836583 2022-05-12
254 ruddy duck[IGV] Oxyura jamaicensis GCF_011077185.1_BPBGC_Ojam_1.0 SAMN13257492 PRJNA588796 2020-03-10
255 ruff[IGV] Calidris pugnax GCF_001431845.1_ASM143184v1 SAMN03491621 PRJNA281024 2015-11-04
256 rufous-necked snowfinch[IGV] Pyrgilauda ruficollis GCF_017590135.1_ASM1759013v1 SAMN18252884 PRJNA417520 2021-03-26
257 rusty-margined flycatcher (MyiCay16 2022)[IGV] Myiozetetes cayanensis GCF_022539395.1_myiCay2020 SAMN25990114 PRJNA807488 2022-03-10
258 saffron-crested tyrant-manakin[IGV] Neopelma chrysocephalum GCF_003984885.1_ASM398488v2 SAMN08784363 PRJNA445439 2018-12-28
259 sage sparrow (canescens MVZ Bird 192114 alternate hap 2022)[IGV] Artemisiospiza belli GCA_021966175.1_bArtBel1.0.a SAMN24224802 PRJNA791508 2022-02-04
260 sage sparrow (canescens MVZ Bird 192114 primary hap 2022)[IGV] Artemisiospiza belli GCA_021963965.1_bArtBel1.0.p SAMN24224802 PRJNA791509 2022-02-04
261 Saker falcon (bFalChe1 alternate hap 2022)[IGV] Falco cherrug GCA_023634115.1_bFalChe1.alt SAMN28688204 PRJNA842830 2022-06-01
262 Saker falcon (bFalChe1 primary hap 2022 refseq)[IGV] Falco cherrug GCF_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02
263 Saker falcon (BGI 2013)[IGV] Falco cherrug GCF_000337975.1_F_cherrug_v1.0 SAMN02981426 PRJNA168071 2013-02-05
264 saltmarsh sparrow (bAmmCau1 alternate hap 2023)[IGV] Ammospiza caudacuta GCA_027887135.1_bAmmCau1.alt SAMN28421630 PRJNA839451 2023-01-17
265 saltmarsh sparrow (bAmmCau1 primary hap 2023 refseq)[IGV] Ammospiza caudacuta GCF_027887145.1_bAmmCau1.pri SAMN28421630 PRJNA839452 2023-01-18
266 Savannah sparrow (FMNH 499929 alternate hap 2022)[IGV] Passerculus sandwichensis alaudinus GCA_022578375.1_bPasSan1.0.a SAMN24839580 PRJNA796787 2022-03-15
267 Savannah sparrow (FMNH 499929 primary hap 2022)[IGV] Passerculus sandwichensis alaudinus GCA_022577445.1_bPasSan1.0.p SAMN24839580 PRJNA796788 2022-03-15
268 Savannah sparrow (primary hap 2023)[IGV] Passerculus sandwichensis GCA_031885435.1_bPasSan2.pri SAMN35784765 PRJNA1006784 2023-09-25
269 seaside sparrow (bAmmMar1 primary hap 2024)[IGV] Ammospiza maritima maritima GCA_036010785.1_bAmmMar1.pri SAMN39181024 PRJNA1060856 2024-01-24
270 small tree finch (2019)[IGV] Camarhynchus parvulus GCF_901933205.1_STF_HiC SAMEA5603054 PRJEB32528 2019-09-06
271 small tree finch (2020)[IGV] Camarhynchus parvulus GCA_902806625.1_Camarhynchus_parvulus_V1.1 SAMEA6542012 PRJEB36748 2020-03-21
272 song sparrow (bMelMel2 primary hap 2024)[IGV] Melospiza melodia melodia GCF_035770615.1_bMelMel2.pri SAMN35847297 PRJNA1006794 2024-01-24
273 song sparrow (gouldii PMB2087b alternate hap 2022)[IGV] Melospiza melodia GCA_022749775.1_bMelMel1.0.a SAMN24817870 PRJNA796323 2022-03-29
274 song sparrow (gouldii PMB2087b primary hap 2022)[IGV] Melospiza melodia GCA_022749695.1_bMelMel1.0.p SAMN24817870 PRJNA796324 2022-03-29
275 song sparrow (primary hap 2024)[IGV] Melospiza melodia melodia GCA_035770615.1_bMelMel2.pri SAMN35847297 PRJNA1006794 2024-01-24
276 South Island takahe (alternate 2021)[IGV] Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon SAMN22550412 PRJNA774332 2021-11-08
277 South Island takahe (primary 2021)[IGV] Porphyrio hochstetteri GCA_020800305.1_bPorHoc1.mat.Z.cur SAMN22550412 PRJNA774331 2021-11-08
278 speckled mousebird (bColStr4 hap1 2023)[IGV] Colius striatus GCF_028858725.1_bColStr4.1.hap1 SAMN33339572 PRJNA936149 2023-02-24
279 speckled mousebird (bColStr4 hap2 2023)[IGV] Colius striatus GCA_028858625.2_bColStr4.1.hap2 SAMN33339572 PRJNA936150 2023-02-24
280 speckled mousebird (BGI_N325 2014)[IGV] Colius striatus GCF_000690715.1_ASM69071v1 SAMN02324230 PRJNA212892 2014-05-13
281 speckled mousebird (hap1 2023)[IGV] Colius striatus GCA_028858725.1_bColStr4.hap1 SAMN33339572 PRJNA936149 2023-02-24
282 speckled mousebird (hap2 2023)[IGV] Colius striatus GCA_028858625.1_bColStr4.hap2 SAMN33339572 PRJNA936150 2023-02-24
283 steelblue widowfinch (merged hap OUT-0048 2022)[IGV] Vidua chalybeata GCA_026979565.1_bVidCha1_merged_haplotype SAMN12254000 PRJNA889055 2022-12-21
284 steelblue widowfinch (purged dups hap OUT-0048 2022)[IGV] Vidua chalybeata GCA_026979555.1_bVidCha1_purged_dups_haplotype SAMN12254000 PRJNA889056 2022-12-16
285 Steller's jay (frontalis alternate hap 2022)[IGV] Cyanocitta stelleri GCA_026168045.1_bCyaSte1.0.a SAMN30523672 PRJNA875160 2022-11-14
286 Steller's jay (frontalis primary hap 2022)[IGV] Cyanocitta stelleri GCA_026167965.1_bCyaSte1.0.p SAMN30523672 PRJNA875161 2022-11-14
287 sun parakeet (2019)[IGV] Aratinga solstitialis GCA_902168055.1_ARATINGA-SOLSTITIALIS-ASSEMBLY-PRJEB33153 SAMEA5743801 PRJEB33153 2019-11-14
288 sunbittern[IGV] Eurypyga helias GCF_000690775.1_ASM69077v1 SAMN02324546 PRJNA212893 2014-05-13
289 Suruca trogon (bRtoSur1 primary hap 2021)[IGV] Trogon surrucura GCA_020746105.1_bTroSur1.pri.cur SAMN22550082 PRJNA774295 2021-11-05
290 Suruca trogon (bTroSur1 alternate hap 2021)[IGV] Trogon surrucura GCA_020746095.1_bTroSur1.alt.cur SAMN22550082 PRJNA774296 2021-11-05
291 Swainson's thrush (bCatUst1 v2 alternate hap 2020)[IGV] Catharus ustulatus GCA_009819505.2_bCatUst1.alt.v2 SAMN12618602 PRJNA561934 2020-11-05
292 Swainson's thrush (bCatUst1 v2 primary hap 2020)[IGV] Catharus ustulatus GCF_009819885.2_bCatUst1.pri.v2 SAMN12618602 PRJNA561933 2020-12-22
293 swamp sparrow (bMelGeo1 alternate hap 2023)[IGV] Melospiza georgiana GCA_028019105.1_bMelGeo1.alt SAMN22787412 PRJNA915610 2023-01-26
294 swamp sparrow (bMelGeo1 primary hap 2023 refseq)[IGV] Melospiza georgiana GCF_028018845.1_bMelGeo1.pri SAMN22787412 PRJNA915609 2023-01-31
295 swan goose (Sichuan white goose 2017)[IGV] Anser cygnoides GCF_002166845.1_GooseV1.0 SAMN02898389 PRJNA253976 2017-06-02
296 swan goose (Tianfu 2020)[IGV] Anser cygnoides GCA_013030995.1_ASM1303099v1 SAMN13281505 PRJNA589208 2020-05-11
297 swan goose (Zhedong 2015)[IGV] Anser cygnoides domesticus GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 SAMN01830643 PRJNA183603 2015-04-08
298 tawny frogmouth (bPodStr1 alternate hap 2023)[IGV] Podargus strigoides GCA_028020675.1_bPodStr1.alt SAMN31801959 PRJNA912328 2023-01-26
299 tawny frogmouth (bPodStr1 primary hap 2023)[IGV] Podargus strigoides GCA_028020825.1_bPodStr1.pri SAMN31801959 PRJNA912327 2023-01-31
300 tawny owl (hap1 2023)[IGV] Strix aluco GCA_031877795.1_bStrAlu1.hap1 SAMN37055808 PRJNA1007267 2023-09-25
301 tawny owl (hap2 2023)[IGV] Strix aluco GCA_031877785.1_bStrAlu1.hap2 SAMN37055808 PRJNA1007266 2023-09-25
302 tawny-flanked prinia (Zambia CZ2003 2024)[IGV] Prinia subflava GCF_021018805.1_Cam_Psub_1.2 SAMN20994451 PRJNA758068 2024-01-26
303 Tibetan ground-tit[IGV] Pseudopodoces humilis GCF_000331425.1_PseHum1.0 SAMN02981490 PRJNA175930 2013-01-11
304 tourmaline sunangel (hap1 2024)[IGV] Heliangelus exortis GCA_036169615.1_bHelExo1.hap1 SAMN37253778 PRJNA1012326 2024-01-17
305 tourmaline sunangel (hap2 2024)[IGV] Heliangelus exortis GCA_036172335.1_bHelExo1.hap2 SAMN37253778 PRJNA1012325 2024-01-26
306 tricolored blackbird (1412-34295 alternate hap 2022)[IGV] Agelaius tricolor GCA_023055385.1_bAgeTri1.0.a SAMN25872474 PRJNA810501 2022-04-19
307 tricolored blackbird (1412-34295 primary hap 2022)[IGV] Agelaius tricolor GCA_023055355.1_bAgeTri1.0.p SAMN25872474 PRJNA810502 2022-04-19
308 tufted duck (2019)[IGV] Aythya fuligula GCF_009819795.1_bAytFul2.pri SAMN12621346 PRJNA561952 2019-12-31
309 tufted duck (alternate hap 2019)[IGV] Aythya fuligula GCA_009819845.1_bAytFul2.alt SAMN12621346 PRJNA561953 2019-12-23
310 turkey (Aviagen NT-WF06-2002-E0010 2014)[IGV] Meleagris gallopavo GCF_000146605.3_Turkey_5.1 SAMN02981253 PRJNA42129 2014-11-24
311 turkey (WU_HG_1 2021)[IGV] Meleagris gallopavo GCA_905368555.1_MGAL_WU_HG_1.0 SAMEA7852930 PRJEB42643 2021-03-26
312 village indigobird (OUT-0048 2022)[IGV] Vidua chalybeata GCF_026979565.1_bVidCha1_merged_haplotype SAMN12254000 PRJNA889055 2022-12-21
313 Virginia rail (171378401 alternate hap 2022)[IGV] Rallus limicola GCA_022605895.1_bRalLim1.0.a SAMN24505263 PRJNA794194 2022-03-17
314 Virginia rail (171378401 primary hap 2022)[IGV] Rallus limicola GCA_022605955.1_bRalLim1.0.p SAMN24505263 PRJNA794195 2022-03-17
315 western capercaillie (alternate hap 2023)[IGV] Tetrao urogallus GCA_951394355.1_bTetUro1.1_alternate_haplotype SAMEA9654429 PRJEB62069 2023-05-13
316 western capercaillie (primary hap 2023)[IGV] Tetrao urogallus GCA_951394365.1_bTetUro1.1 SAMEA9654429 PRJEB62070 2023-06-15
317 western scrub-jay (CA MVZ Bird 193978 2023)[IGV] Aphelocoma californica GCA_028536645.1_bAphCal1.0.hap2 SAMN31837216 PRJNA904313 2023-02-07
318 western scrub-jay (CA MVZ Bird 193978 2023)[IGV] Aphelocoma californica GCA_028536675.1_bAphCal1.0.hap1 SAMN31837216 PRJNA904314 2023-02-07
319 whiskered treeswift (bHemCom1 alternate hap 2021)[IGV] Hemiprocne comata GCA_020745695.1_bHemCom1.alt.cur SAMN22588383 PRJNA774830 2021-11-05
320 whiskered treeswift (bHemCor1 primary hap 2021)[IGV] Hemiprocne comata GCA_020745705.1_bHemCom1.pri.cur SAMN22588383 PRJNA774831 2021-11-05
321 white wagtail[IGV] Motacilla alba alba GCF_015832195.1_Motacilla_alba_V1.0_pri SAMN16093224 PRJNA662706 2020-12-08
322 white-collared manakin (Guabito, Panama 608988 2022)[IGV] Manacus candei GCF_025592945.1_ASM2559294v1 SAMN30181648 PRJNA867001 2022-10-05
323 white-crowned manakin (hap1 2024)[IGV] Pseudopipra pipra GCA_036250125.1_bDixPip1.hap1 SAMN32739894 PRJNA1057371 2024-01-31
324 white-crowned manakin (hap2 2024)[IGV] Pseudopipra pipra GCA_036250135.1_bDixPip1.hap2 SAMN32739894 PRJNA1057370 2024-01-31
325 white-ruffed manakin[IGV] Corapipo altera GCF_003945725.1_ASM394572v1 SAMN10424454 PRJNA505529 2018-12-14
326 white-rumped snowfinch[IGV] Onychostruthus taczanowskii GCF_017590055.1_ASM1759005v1 SAMN18252883 PRJNA417520 2021-03-26
327 white-tailed eagle (BGI_N329 2014)[IGV] Haliaeetus albicilla GCF_000691405.1_ASM69140v1 SAMN02333670 PRJNA212896 2014-05-15
328 white-tailed eagle (bHalAlb1.1 2022)[IGV] Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 SAMEA12857288 PRJEB57865 2022-12-06
329 white-tailed eagle (bHalAlb1.1 alternate hap 2022)[IGV] Haliaeetus albicilla GCA_947461935.1_bHalAlb1.1_alternate_haplotype SAMEA12857288 PRJEB57864 2022-12-02
330 white-tailed ptarmigan[IGV] Lagopus leucura GCF_019238085.1_USGS_WTPT01 SAMN12859112 PRJNA574481 2021-07-15
331 white-tailed tropicbird[IGV] Phaethon lepturus GCF_000687285.1_ASM68728v1 SAMN02339888 PRJNA212902 2014-05-08
332 white-throated dipper (primary hap 2023)[IGV] Cinclus cinclus GCA_963662255.1_bCinCin1.1 SAMEA9679959 PRJEB68422 2023-12-11
333 white-throated dipper (primary hap 2023)[IGV] Cinclus cinclus GCF_963662255.1_bCinCin1.1 SAMEA9679959 PRJEB68422 2023-12-11
334 white-throated sparrow[IGV] Zonotrichia albicollis GCF_000385455.1_Zonotrichia_albicollis-1.0.1 SAMN02981528 PRJNA197293 2013-04-30
335 white-throated tinamou[IGV] Tinamus guttatus GCF_000705375.1_ASM70537v2 SAMN02316659 PRJNA212876 2014-08-05
336 whooping crane (maternal hap 2023 refseq)[IGV] Grus americana GCF_028858705.1_bGruAme1.mat SAMN32775697 PRJNA924953 2023-02-24
337 whooping crane (paternal hap 2023)[IGV] Grus americana GCA_028858595.1_bGruAme1.pat SAMN32775697 PRJNA924954 2023-02-24
338 willow flycatcher[IGV] Empidonax traillii GCF_003031625.1_ASM303162v1 SAMN08663748 PRJNA437496 2018-04-03
339 wire-tailed manakin (2020)[IGV] Pipra filicauda GCF_003945595.2_ASM394559v2 SAMN08774045 PRJNA445296 2020-12-01
340 wrentit (frontalis MVZ Bird 193981 alternate hap 2023)[IGV] Chamaea fasciata GCA_029207785.1_bChaFas1.0.hap2 SAMN33386005 PRJNA936926 2023-03-14
341 wrentit (frontalis MVZ Bird 193981 primary hap 2023)[IGV] Chamaea fasciata GCA_029207755.1_bChaFas1.0.hap1 SAMN33386005 PRJNA936927 2023-03-14
342 yellow warbler (LACM:Birds122168 alternate hap 2022)[IGV] Setophaga petechia GCA_024372515.1_bSetPet1.0.a SAMN29044059 PRJNA851102 2022-07-21
343 yellow warbler (LACM:Birds122168 primary hap 2022)[IGV] Setophaga petechia GCA_024362935.1_bSetPet1.0.p SAMN29044059 PRJNA851103 2022-07-22
344 yellow-throated sandgrouse (2019)[IGV] Pterocles gutturalis GCA_009769525.1_bPteGut1.pri SAMN12623217 PRJNA561958 2019-12-23
345 yellow-throated sandgrouse (alternate hap 2019)[IGV] Pterocles gutturalis GCA_009769505.1_bPteGut1.alt SAMN12623217 PRJNA561959 2019-12-19
346 zebra finch (alternate hap Black17 2018)[IGV] Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h SAMN02981239 PRJNA489099 2018-12-20
347 zebra finch (alternate hap Blue55 v1 2020)[IGV] Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt SAMN09946140 PRJNA489187 2020-01-13
348 zebra finch (Black17 v1.4 alternate hap 2021)[IGV] Taeniopygia guttata GCA_003957525.2_bTaeGut1.4.alt SAMN02981239 PRJNA489099 2021-04-28
349 zebra finch (Blue55 2020)[IGV] Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 SAMN09946140 PRJNA489186 2020-04-01
350 zebra finch (Blue55 maternal v3 2020)[IGV] Taeniopygia guttata GCA_008822115.3_bTaeGut2.mat.v3 SAMN09946140 PRJNA489100 2020-02-21
351 zebra finch (Blue55 paternal 2019)[IGV] Taeniopygia guttata GCA_008822125.1_bTaeGut2pat SAMN09946140 PRJNA489101 2019-10-03
352 zebra finch (Blue55 paternal W 2020)[IGV] Taeniopygia guttata GCF_008822105.2_bTaeGut2.pat.W.v2 SAMN09946140 PRJNA555095 2020-02-12
353 zebra finch (Blue55 v1.4 primary hap 2021)[IGV] Taeniopygia guttata GCF_003957565.2_bTaeGut1.4.pri SAMN02981239 PRJNA489098 2021-05-04

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 214 assemblies assembly stats track stats
Mammals 533 assemblies assembly stats track stats
Birds 353 assemblies assembly stats track stats
Fishes 385 assemblies assembly stats track stats
other vertebrates 220 assemblies assembly stats track stats
Invertebrates 698 assemblies assembly stats track stats
Plants 296 assemblies assembly stats track stats
Fungi 648 assemblies assembly stats track stats
Viruses 281 assemblies assembly stats track stats
Bacteria 96 assemblies assembly stats track stats
legacy/superseded 442 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 865 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats