Birds Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of birds only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/birds/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Birds Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 Abyssinian ground-hornbill (2019 VGP) Bucorvus abyssinicus GCA_009769605.1_bBucAby1.pri SAMN12614799 PRJNA561887 2019-12-23
2 Abyssinian ground-hornbill (alt pseudohaplotype 2019 VGP) Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt SAMN12614799 PRJNA561886 2019-12-19
3 Adelie penguin Pygoscelis adeliae GCF_000699105.1_ASM69910v1 SAMN02596601 PRJNA235983 2014-06-06
4 African ostrich Struthio camelus australis GCF_000698965.1_ASM69896v1 SAMN02316164 PRJNA212875 2014-06-06
5 American crow Corvus brachyrhynchos GCF_000691975.1_ASM69197v1 SAMN02297499 PRJNA212869 2014-06-02
6 American flamingo (2019 VGP) Phoenicopterus ruber ruber GCA_009819775.1_bPhoRub2.pri SAMN12614931 PRJNA561888 2019-12-31
7 American flamingo (alt pseudohaplotype 2019 VGP) Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt SAMN12614931 PRJNA561889 2019-12-23
8 Anna's hummingbird (alt pseudohaplotype BGI_N300 2018 VGP) Calypte anna GCA_003957575.1_bCalAnn1_v1.h SAMN02265252 PRJNA489140 2018-12-20
9 Anna's hummingbird (BGI_N300 2019 refseq VGP) Calypte anna GCF_003957555.1_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16
10 bald eagle Haliaeetus leucocephalus GCF_000737465.1_Haliaeetus_leucocephalus-4.0 SAMN02664716 PRJNA237821 2014-08-04
11 bar-tailed trogon Apaloderma vittatum GCF_000703405.1_ASM70340v1 SAMN02318033 PRJNA212878 2014-06-16
12 barn owl (U. Lausanne 2021) Tyto alba GCF_018691265.1_T.alba_DEE_v4.0 SAMN17526497 PRJNA694551 2021-06-03
13 barn swallow (genbank 2021) Hirundo rustica GCA_015227805.2_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02
14 barn swallow (refseq 2021) Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02
15 Bengalese finch Lonchura striata domestica GCF_005870125.1_lonStrDom2 SAMN11521339 PRJNA369279 2019-06-05
16 blackcap (2019 VGP) Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri SAMN12369542 PRJNA558064 2019-12-31
17 blackcap (alt pseudohaplotype 2019 VGP) Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt SAMN12369542 PRJNA558065 2019-12-23
18 black swan (v2 Queensland, Australia AKBS03 2022) Cygnus atratus GCF_013377495.2_CAtr_DNAZoo_HiC_assembly SAMN15332785 PRJNA640810 2022-08-03
19 black-throated flowerpiercer Diglossa brunneiventris GCA_019023105.1_LSU_DiBr_2.0 SAMN17308174 PRJNA629984 2021-06-24
20 blue tit Cyanistes caeruleus GCF_002901205.1_cyaCae2 SAMN03734925 PRJNA284903 2018-01-26
21 blue-crowned manakin Lepidothrix coronata GCF_001604755.1_Lepidothrix_coronata-1.0 SAMN04274560 PRJNA300662 2016-03-31
22 blue-fronted amazon (FVVF132 2015) Amazona aestiva GCA_001420675.1_ASM142067v1 SAMN04014659 PRJNA294082 2015-10-30
23 brown eared-pheasant Crossoptilon mantchuricum GCA_019593555.1_cma1 SAMN15899056 PRJNA659158 2021-08-13
24 brown headed cowbird Molothrus ater GCF_012460135.1_BPBGC_Mater_1.0 SAMN14074414 PRJNA606972 2020-04-20
25 brown kiwi Apteryx mantelli mantelli GCF_001039765.1_AptMant0 SAMEA2560515 PRJEB6383 2015-06-21
26 brown roatelo Mesitornis unicolor GCF_000695765.1_ASM69576v1 SAMN02339298 PRJNA212899 2014-06-02
27 budgerigar (v6.3 2021 WashU) Melopsittacus undulatus GCF_000238935.1_Melopsittacus_undulatus_6.3 SAMN02981360 PRJNA72527 2012-01-02
28 budgerigar (maternal 2020 VGP) Melopsittacus undulatus GCA_012275265.1_bMelUnd1.mat SAMN12623090 PRJNA561964 2020-04-13
29 budgerigar (maternal Z 2020 refseq VGP) Melopsittacus undulatus GCF_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13
30 budgerigar (paternal 2020 VGP) Melopsittacus undulatus GCA_012275275.1_bMelUnd1.pat SAMN12623090 PRJNA561963 2020-04-13
31 burrowing owl Athene cunicularia GCF_003259725.1_athCun1 SAMN08961563 PRJNA431202 2018-06-21
32 California condor Gymnogyps californianus GCA_018139145.1_ASM1813914v1 SAMN18477433 PRJNA718609 2021-04-25
33 Canada goose (SJ_97 2019) Branta canadensis GCA_006130075.1_GSC_cangoose_1.0 SAMN11031539 PRJNA524684 2019-06-05
34 carmine bee-eater (alt pseudohaplotype 2019 VGP) Merops nubicus GCA_009819585.1_bMerNub1.alt SAMN12621035 PRJNA561895 2019-12-23
35 carmine bee-eater (2019 VGP) Merops nubicus GCA_009819595.1_bMerNub1.pri SAMN12621035 PRJNA561894 2019-12-31
36 chicken Gallus gallus GCF_000002315.6_GRCg6a SAMN02981218 PRJNA13342 2018-03-27
37 chicken white leghorn layer X broiler (leghorn haplotype v2 VGP 2021) Gallus gallus GCF_016700215.2_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-10-01
38 chicken white leghorn layer X broiler (broiler haplotype 2021 v2 VGP 2021) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b SAMN15960293 PRJNA660757 2021-01-19
39 Chilean tinamou Nothoprocta perdicaria GCF_003342845.1_notPer1 SAMN08476459 PRJNA433110 2018-07-26
40 chimney swift (M959 v1.1 2014) Chaetura pelagica GCF_000747805.2_ChaPel_1.1 SAMN03018471 PRJNA210808 2014-09-04
41 chuck-will's-widow (BGI_N321 v2 2014) Antrostomus carolinensis GCF_000700745.2_ASM70074v2 SAMN02318612 PRJNA212888 2014-06-10
42 collared flycatcher Ficedula albicollis GCF_000247815.1_FicAlb1.5 SAMN02981387 PRJNA75089 2013-06-27
43 common canary Serinus canaria GCF_007115625.1_cibio_Scana_2019 SAMN12017177 PRJNA548289 2019-07-18
44 common cuckoo (VGP 2021) Cuculus canorus GCA_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15
45 common starling Sturnus vulgaris GCF_001447265.1_Sturnus_vulgaris-1.0 SAMN04029017 PRJNA293892 2015-11-20
46 common swift (bApuApu2 2021 VGP refseq) Apus apus GCF_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04
47 common tern (alt pseudohaplotype 2019 VGP) Sterna hirundo GCA_009819645.1_bSteHir1.alt SAMN12369541 PRJNA558063 2019-12-23
48 common tern (2019 VGP) Sterna hirundo GCA_009819605.1_bSteHir1.pri SAMN12369541 PRJNA558062 2019-12-31
49 common yellowthroat (alt pseudohaplotype 2019 VGP) Geothlypis trichas GCA_009764545.1_bGeoTri1.alt SAMN12631222 PRJNA589704 2019-12-18
50 common yellowthroat (2019 VGP) Geothlypis trichas GCA_009764595.1_bGeoTri1.pri SAMN12631222 PRJNA589703 2019-12-19
51 crested ibis Nipponia nippon GCF_000708225.1_ASM70822v1 SAMN02596464 PRJNA232572 2014-06-16
52 cuckoo roller Leptosomus discolor GCF_000691785.1_ASM69178v1 SAMN02333687 PRJNA212897 2014-05-23
53 Dalmatian pelican Pelecanus crispus GCF_000687375.1_ASM68737v1 SAMN02339887 PRJNA212901 2014-05-09
54 downy woodpecker (VGP 2020) Dryobates pubescens GCA_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02
55 East African grey crowned-crane Balearica regulorum gibbericeps GCF_000709895.1_ASM70989v1 SAMN02318095 PRJNA212879 2014-06-25
56 East African grey crowned-crane (alt pseudohaplotyp 2020 VGP) Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt SAMN12615749 PRJNA561891 2020-02-24
57 East African grey crowned-crane (bBalReg1 2020 VGP) Balearica regulorum gibbericeps GCA_011004875.1_bBalReg1.pri SAMN12615749 PRJNA561890 2020-03-05
58 emperor penguin Aptenodytes forsteri GCF_000699145.1_ASM69914v1 SAMN02596600 PRJNA235982 2014-06-06
59 emu (2018) Dromaius novaehollandiae GCF_003342905.1_droNov1 SAMN08476457 PRJNA433110 2018-07-26
60 emu (2020) Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 SAMN15183959 PRJNA638233 2020-12-20
61 Eurasian nightjar Caprimulgus europaeus GCA_907165065.1_bCapEur3.1 SAMEA7524394 PRJEB44540 2021-05-17
62 Eurasian tree sparrow Passer montanus GCF_014805655.1_ASM1480565v1 SAMN07998528 PRJNA417520 2020-09-30
63 European golden plover Pluvialis apricaria GCA_017639485.1_bPluApr1.pri SAMN18353970 PRJNA715924 2021-03-30
64 European robin Erithacus rubecula GCA_903797595.2_bEriRub2.2 SAMEA4760689 PRJEB38658 2021-05-03
65 European turtle dove (alt pseudohaplotype v1.1 2019 VGP) Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype SAMEA994735 PRJEB32725 2019-06-02
66 European turtle dove (v1.2 2021 VGP) Streptopelia turtur GCA_901699155.2_bStrTur1.2 SAMEA994735 PRJEB32724 2021-05-17
67 garden warbler Sylvia borin GCA_014839755.1_bSylBor1.pri SAMN12618613 PRJNA561945 2020-10-02
68 golden-collared manakin Manacus vitellinus GCF_001715985.3_ASM171598v3 SAMN02299332 PRJNA335611 2019-07-03
69 golden eagle (2019 VGP) Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype SAMEA994725 PRJEB33298 2019-07-08
70 golden eagle (v1.4 2021 VGP) Aquila chrysaetos chrysaetos GCF_900496995.4_bAquChr1.4 SAMEA994725 PRJEB27699 2021-03-26
71 golden pheasant Chrysolophus pictus GCA_003413605.1_Chrysolophus_pictus_GenomeV1.0 SAMN02980944 PRJNA257945 2018-08-20
72 great cormorant Phalacrocorax carbo GCF_000708925.1_ASM70892v1 SAMN02339889 PRJNA212903 2014-06-17
73 great potoo Nyctibius grandis GCA_013368605.1_bNycGra1.pri SAMN12622411 PRJNA562020 2020-06-23
74 great tit Parus major GCF_001522545.3_Parus_major1.1 SAMN03083587 PRJNA208335 2019-01-15
75 greater prairie chicken Tympanuchus cupido pinnatus GCA_001870855.1_T_cupido_pinnatus_GPC_3440_v1 SAMN05433571 PRJNA330991 2016-11-07
76 greater rhea Rhea americana GCA_003343005.1_rheAme1 SAMN08476460 PRJNA433110 2018-07-26
77 greater sage-grouse Centrocercus urophasianus GCF_019232065.1_USGS_Curo_1.0 SAMN20124253 PRJNA734947 2021-07-15
78 green peafowl Pavo muticus GCA_016647715.1_ASM1664771v1 SAMN15486085 PRJNA644939 2021-01-15
79 grey parrot (MU2MI4XJKV 2020) Psittacus erithacus GCA_009867235.1_ASM986723v1 SAMN12165726 PRJNA551771 2020-01-14
80 gyrfalcon (2020 VGP) Falco rusticolus GCF_015220075.1_bFalRus1.pri SAMN12629496 PRJNA561988 2020-11-03
81 Hawaiian crow (VGP 2021 refseq) Corvus hawaiiensis GCF_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04
82 helmeted guineafowl Numida meleagris GCF_002078875.1_NumMel1.0 SAMN05969731 PRJNA352321 2017-06-01
83 hoatzin Opisthocomus hoazin GCF_000692075.1_ASM69207v1 SAMN02302474 PRJNA212873 2014-05-19
84 hooded crow (2021) Corvus cornix cornix GCF_000738735.5_ASM73873v5 SAMN02143031 PRJNA192205 2021-02-04
85 hyacinth macaw (LEKZKR9XQ3 2022) Anodorhynchus hyacinthinus GCA_009936445.2_ASM993644v2 SAMN09689126 PRJNA481562 2022-07-21
86 jackdaw Coloeus monedula GCA_013407035.1_ASM1340703v1 SAMN14646012 PRJNA626609 2020-07-13
87 Japanese quail Coturnix japonica GCF_001577835.2_Coturnix_japonica_2.1 SAMN03989050 PRJNA292031 2016-03-01
88 kakapo (Jane alt pseudohaplotype 2019 VGP) Strigops habroptila GCA_004011185.1_bStrHab1_v1.h SAMN09948751 PRJNA489134 2019-01-10
89 kakapo (Jane v2 2020 refseq VGP) Strigops habroptila GCF_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04
90 kea Nestor notabilis GCF_000696875.1_ASM69687v1 SAMN02339299 PRJNA212900 2014-06-05
91 killdeer Charadrius vociferus GCF_000708025.1_ASM70802v2 SAMN02296710 PRJNA212867 2014-08-05
92 lance-tailed manakin (2020 VGP) Chiroxiphia lanceolata GCF_009829145.1_bChiLan1.pri SAMN12620979 PRJNA561943 2020-01-03
93 lance-tailed manakin (alt pseudohaplotype 2020 VGP) Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt SAMN12620979 PRJNA561944 2020-01-03
94 lanner falcon (2022 VGP) Falco biarmicus GCA_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02
95 lesser kestrel (alt pseudohaplotype 2021 VGP) Falco naumanni GCA_017639645.1_bFalNau1.mat SAMN16870685 PRJNA702665 2021-03-30
96 lesser kestrel (v2 2021 VGP) Falco naumanni GCF_017639655.2_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30
97 lesser rhea Rhea pennata GCA_003342835.1_rhePen1 SAMN08476461 PRJNA433110 2018-07-26
98 little egret Egretta garzetta GCF_000687185.1_ASM68718v1 SAMN02596466 PRJNA232959 2014-05-09
99 Macqueen's bustard Chlamydotis macqueenii GCF_000695195.1_ASM69519v1 SAMN02324157 PRJNA212891 2014-06-02
100 maguari stor Ciconia maguari GCA_017639555.1_bCicMag1.pri SAMN18353822 PRJNA715733 2021-03-30
101 mallard CAU_Wild1.0 Anas platyrhynchos GCA_008746955.1_CAU_Wild1.0 SAMN12287667 PRJNA554956 2019-10-07
102 mallard PBH1.5 Anas platyrhynchos GCF_003850225.1_IASCAAS_PekingDuck_PBH1.5 SAMN10245527 PRJNA496533 2018-11-29
103 mallard ZJU1.0 Anas platyrhynchos GCF_015476345.1_ZJU1.0 SAMN15588841 PRJNA636121 2020-11-23
104 Mariana crow Corvus kubaryi GCF_017639235.1_C.kubaryi_AGA036_p1.0 SAMN16883221 PRJNA680658 2021-03-30
105 medium ground-finch Geospiza fortis GCF_000277835.1_GeoFor_1.0 SAMN00839579 PRJNA156703 2012-07-25
106 monk parakeet Myiopsitta monachus GCA_017639245.1_MMon_1.0 SAMN16846069 PRJNA679636 2021-03-30
107 mute swan (alt pseudohaplotype 2019 VGP) Cygnus olor GCA_009769485.1_bCygOlo1.alt SAMN12621369 PRJNA561961 2019-12-19
108 mute swan (v2 2021 VGP) Cygnus olor GCF_009769625.2_bCygOlo1.pri.v2 SAMN12621369 PRJNA561960 2021-03-31
109 New Caledonian crow (2019 VGP) Corvus moneduloides GCF_009650955.1_bCorMon1.pri SAMN12368441 PRJNA560983 2019-11-14
110 New Caledonian crow (alt pseudohaplotype 2019 VGP) Corvus moneduloides GCA_009651025.1_bCorMon1.alt SAMN12368441 PRJNA560982 2019-11-12
111 northern bobwhite Colinus virginianus GCA_008692595.2_Cv_LA_2.0 SAMN09044008 PRJNA454855 2021-04-29
112 northern fulmar Fulmarus glacialis GCF_000690835.1_ASM69083v1 SAMN02324803 PRJNA212894 2014-05-13
113 northern goshawk (2022 VGP) Accipiter gentilis GCF_929443795.1_bAccGen1.1 SAMEA8235650 PRJEB50702 2022-02-09
114 Okarito brown kiwi Apteryx rowi GCF_003343035.1_aptRow1 SAMN08476454 PRJNA433110 2018-07-26
115 peregrine falcon (2022 VGP) Falco peregrinus GCA_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02
116 peregrine falcon (BGI 2013) Falco peregrinus GCF_000337955.1_F_peregrinus_v1.0 SAMN02981425 PRJNA159791 2013-02-05
117 plumbeous ibis Theristicus caerulescens GCA_020745775.1_bTheCae1.pri.cur SAMN22550094 PRJNA774297 2021-11-05
118 razorbill (2006_11_07_Graehlm_vinge_78 2019 VGP) Alca torda GCA_008658365.1_bAlcTor1_primary SAMN12292087 PRJNA554520 2019-10-10
119 razorbill (alt pseudohaplotype 2006_11_07_Graehlm_vinge_78 2019 VGP) Alca torda GCA_008658355.1_bAlcTor1_alternate SAMN12292087 PRJNA554521 2019-09-23
120 red-crested turaco (2019 VGP) Tauraco erythrolophus GCA_009769465.1_bTauEry1.pri SAMN12621036 PRJNA561947 2019-12-19
121 red-crested turaco (alt pseudohaplotype 2019 VGP) Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt SAMN12621036 PRJNA561948 2019-12-18
122 red-fronted tinkerbird Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri SAMN15098508 PRJNA637953 2020-11-03
123 red-legged partridge Alectoris rufa GCA_019345075.1_ASM1934507v1 SAMN16083939 PRJNA662415 2021-07-26
124 red-legged seriema (2019 VGP) Cariama cristata GCA_009819825.1_bCarCri1.pri SAMN12614807 PRJNA561892 2019-12-31
125 red-legged seriema (alt pseudohaplotype 2019 VGP) Cariama cristata GCA_009819485.1_bCarCri1.alt SAMN12614807 PRJNA561893 2019-12-23
126 red-throated loon Gavia stellata GCF_000690875.1_ASM69087v1 SAMN02324832 PRJNA212895 2014-05-13
127 rhinoceros hornbill Buceros rhinoceros silvestris GCF_000710305.1_ASM71030v1 SAMN02318191 PRJNA212887 2014-06-25
128 rifleman (VGP 2021) Acanthisitta chloris GCA_016904835.1_bAcaChl1.pri SAMN16442762 PRJNA561954 2021-02-17
129 ring-necked pheasant Phasianus colchicus GCF_004143745.1_ASM414374v1 SAMN08888240 PRJNA449162 2019-02-06
130 rock pigeon (Danish tumbler 2013 BGI) Columba livia GCF_000337935.1_Cliv_1.0 SAMN02981415 PRJNA167554 2013-02-11
131 rock ptarmigan (2022 VGP) Lagopus muta GCF_023343835.1_bLagMut1_primary SAMN25144835 PRJNA836583 2022-05-12
132 ruddy duck Oxyura jamaicensis GCF_011077185.1_BPBGC_Ojam_1.0 SAMN13257492 PRJNA588796 2020-03-10
133 ruff Calidris pugnax GCF_001431845.1_ASM143184v1 SAMN03491621 PRJNA281024 2015-11-04
134 rufous-necked snowfinch Pyrgilauda ruficollis GCF_017590135.1_ASM1759013v1 SAMN18252884 PRJNA417520 2021-03-26
135 rusty-margined flycatcher (2022) Myiozetetes cayanensis GCF_022539395.1_myiCay2020 SAMN25990114 PRJNA807488 2022-03-10
136 saffron-crested tyrant-manakin Neopelma chrysocephalum GCF_003984885.1_ASM398488v2 SAMN08784363 PRJNA445439 2018-12-28
137 Saker falcon (2022 VGP) Falco cherrug GCA_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02
138 Saker falcon (BGI 2013) Falco cherrug GCF_000337975.1_F_cherrug_v1.0 SAMN02981426 PRJNA168071 2013-02-05
139 small tree finch (2019) Camarhynchus parvulus GCF_901933205.1_STF_HiC SAMEA5603054 PRJEB32528 2019-09-06
140 small tree finch (2020) Camarhynchus parvulus GCA_902806625.1_Camarhynchus_parvulus_V1.1 SAMEA6542012 PRJEB36748 2020-03-21
141 South Island takahe (VGP alternate 2021) Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon SAMN22550412 PRJNA774332 2021-11-08
142 South Island takahe (VGP primary 2021) Porphyrio hochstetteri GCA_020800305.1_bPorHoc1.mat.Z.cur SAMN22550412 PRJNA774331 2021-11-08
143 speckled mousebird Colius striatus GCF_000690715.1_ASM69071v1 SAMN02324230 PRJNA212892 2014-05-13
144 sunbittern Eurypyga helias GCF_000690775.1_ASM69077v1 SAMN02324546 PRJNA212893 2014-05-13
145 Suruca trogon Trogon surrucura GCA_020746105.1_bTroSur1.pri.cur SAMN22550082 PRJNA774295 2021-11-05
146 Swainson's thrush (alt pseudohaplotype 2019 VGP) Catharus ustulatus GCA_009819505.1_bCatUst1.alt SAMN12618602 PRJNA561934 2019-12-23
147 Swainson's thrush (v2 2020 VGP) Catharus ustulatus GCF_009819885.2_bCatUst1.pri.v2 SAMN12618602 PRJNA561933 2020-12-22
148 swan goose (Sichuan white goose 2017) Anser cygnoides GCF_002166845.1_GooseV1.0 SAMN02898389 PRJNA253976 2017-06-02
149 swan goose (Tianfu 2020) Anser cygnoides GCA_013030995.1_ASM1303099v1 SAMN13281505 PRJNA589208 2020-05-11
150 swan goose (Zhedong 2015) Anser cygnoides domesticus GCF_000971095.1_AnsCyg_PRJNA183603_v1.0 SAMN01830643 PRJNA183603 2015-04-08
151 Tibetan ground-tit Pseudopodoces humilis GCF_000331425.1_PseHum1.0 SAMN02981490 PRJNA175930 2013-01-11
152 tufted duck (alt pseudohaplotype 2019 VGP) Aythya fuligula GCA_009819845.1_bAytFul2.alt SAMN12621346 PRJNA561953 2019-12-23
153 tufted duck (2019 VGP) Aythya fuligula GCF_009819795.1_bAytFul2.pri SAMN12621346 PRJNA561952 2019-12-31
154 turkey (Aviagen NT-WF06-2002-E0010 2014) Meleagris gallopavo GCF_000146605.3_Turkey_5.1 SAMN02981253 PRJNA42129 2014-11-24
155 turkey (WU_HG_1 2021) Meleagris gallopavo GCA_905368555.1_MGAL_WU_HG_1.0 SAMEA7852930 PRJEB42643 2021-03-26
156 whiskered treeswift Hemiprocne comata GCA_020745705.1_bHemCom1.pri.cur SAMN22588383 PRJNA774831 2021-11-05
157 white wagtail Motacilla alba alba GCF_015832195.1_Motacilla_alba_V1.0_pri SAMN16093224 PRJNA662706 2020-12-08
158 white-ruffed manakin Corapipo altera GCF_003945725.1_ASM394572v1 SAMN10424454 PRJNA505529 2018-12-14
159 white-rumped snowfinch Onychostruthus taczanowskii GCF_017590055.1_ASM1759005v1 SAMN18252883 PRJNA417520 2021-03-26
160 white-tailed eagle Haliaeetus albicilla GCF_000691405.1_ASM69140v1 SAMN02333670 PRJNA212896 2014-05-15
161 white-tailed ptarmigan Lagopus leucura GCF_019238085.1_USGS_WTPT01 SAMN12859112 PRJNA574481 2021-07-15
162 white-tailed tropicbird Phaethon lepturus GCF_000687285.1_ASM68728v1 SAMN02339888 PRJNA212902 2014-05-08
163 white-throated sparrow Zonotrichia albicollis GCF_000385455.1_Zonotrichia_albicollis-1.0.1 SAMN02981528 PRJNA197293 2013-04-30
164 white-throated tinamou Tinamus guttatus GCF_000705375.1_ASM70537v2 SAMN02316659 PRJNA212876 2014-08-05
165 willow flycatcher Empidonax traillii GCF_003031625.1_ASM303162v1 SAMN08663748 PRJNA437496 2018-04-03
166 wire-tailed manakin (2020) Pipra filicauda GCF_003945595.2_ASM394559v2 SAMN08774045 PRJNA445296 2020-12-01
167 yellow-throated sandgrouse (2019 VGP) Pterocles gutturalis GCA_009769525.1_bPteGut1.pri SAMN12623217 PRJNA561958 2019-12-23
168 yellow-throated sandgrouse (alt pseudohaplotype 2019 VGP) Pterocles gutturalis GCA_009769505.1_bPteGut1.alt SAMN12623217 PRJNA561959 2019-12-19
169 zebra finch (Blue55 v1.4 2021 VGP) Taeniopygia guttata GCF_003957565.2_bTaeGut1.4.pri SAMN02981239 PRJNA489098 2021-05-04
170 zebra finch (Blue55 2020 VGP) Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 SAMN09946140 PRJNA489186 2020-04-01
171 zebra finch (alt pseudohaplotype Black17 2018 VGP) Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h SAMN02981239 PRJNA489099 2018-12-20
172 zebra finch (alt pseudohaplotype Blue55 v1 2020 VGP) Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt SAMN09946140 PRJNA489187 2020-01-13
173 zebra finch (Blue55 maternal v3 2020 VGP) Taeniopygia guttata GCA_008822115.3_bTaeGut2.mat.v3 SAMN09946140 PRJNA489100 2020-02-21
174 zebra finch (Blue55 paternal 2019 VGP) Taeniopygia guttata GCA_008822125.1_bTaeGut2pat SAMN09946140 PRJNA489101 2019-10-03
175 zebra finch (Blue55 paternal W 2020 VGP) Taeniopygia guttata GCF_008822105.2_bTaeGut2.pat.W.v2 SAMN09946140 PRJNA555095 2020-02-12

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 57 assemblies assembly stats track stats
Mammals 348 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats