Primates Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/primates/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Primates Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link
1 Angolan colobus Colobus angolensis palliatus GCF_000951035.1_Cang.pa_1.0 SAMN03121814 PRJNA251421 2015-03-12
2 aye-aye Daubentonia madagascariensis GCA_004027145.1_DauMad_v1_BIUU SAMN07678077 PRJNA399387 2019-01-16
3 babakoto Indri indri GCA_004363605.1_IndInd_v1_BIUU SAMN07678091 PRJNA399458 2019-03-22
4 black snub-nosed monkey (Rb0 v2 refseq 2016) Rhinopithecus bieti GCF_001698545.2_ASM169854v2 SAMN02786331 PRJNA315476 2016-08-03
5 black-handed spider monkey Ateles geoffroyi GCA_004024785.1_AteGeo_v1_BIUU SAMN07678064 PRJNA399374 2019-01-15
6 Bolivian titi Plecturocebus donacophilus GCA_004027715.1_CalDon_v1_BIUU SAMN07678140 PRJNA399376 2019-01-16
7 Bolivian squirrel monkey (100643 v2.1 BCM 2021) Saimiri boliviensis boliviensis GCF_016699345.2_BCM_Sbol_2.1 SAMN16846876 PRJNA679316 2021-01-12
8 brown lemur Eulemur fulvus GCA_004027275.1_EulFul_v1_BIUU SAMN07678083 PRJNA399393 2019-01-16
9 chimpanzee Pan troglodytes GCF_002880755.1_Clint_PTRv2 SAMN06272697 PRJNA369439 2018-01-19
10 Coquerel's mouse lemur Mirza coquereli GCA_004024645.1_MizCoq_v1_BIUU SAMN07678095 PRJNA399404 2019-01-15
11 Coquerel's sifaka 6110/Marcella (2015 refseq) Propithecus coquereli GCF_000956105.1_Pcoq_1.0 SAMN03121823 PRJNA251429 2015-03-23
12 crab-eating macaque (2020 cy0333) Macaca fascicularis GCA_011100615.1_Macaca_fascicularis_6.0 SAMN14146612 PRJNA607781 2020-03-10
13 crab-eating macaque CE1976F Keio U/RIKEN 2021 Macaca fascicularis GCF_012559485.2_MFA1912RKSv2 SAMD00204697 PRJDB9269 2021-10-26
14 De Brazza's monkey Cercopithecus neglectus GCA_004027615.1_CertNeg_v1_BIUU SAMN07678070 PRJNA399380 2019-01-16
15 drill Mandrillus leucophaeus GCF_000951045.1_Mleu.le_1.0 SAMN03121813 PRJNA251423 2015-03-12
16 Francois's langur Trachypithecus francoisi GCF_009764315.1_Tfra_2.0 SAMN12630612 PRJNA488530 2019-12-18
17 gelada Theropithecus gelada GCF_003255815.1_Tgel_1.0 SAMN09197221 PRJNA470999 2018-06-19
18 golden snub-nosed monkey (2019 Northwest U) Rhinopithecus roxellana GCF_007565055.1_ASM756505v1 SAMN11039125 PRJNA524949 2019-07-29
19 gray mouse lemur Microcebus murinus GCF_000165445.2_Mmur_3.0 SAMN06275470 PRJNA19967 2017-02-06
20 green monkey 1994-021 (2014 refseq) Chlorocebus sabaeus GCF_000409795.2_Chlorocebus_sabeus_1.1 SAMN01760484 PRJNA168621 2014-03-25
21 green monkey WHO RCB 10-87 Chlorocebus sabaeus GCF_015252025.1_Vero_WHO_p1.0 SAMN15458746 PRJNA644395 2020-11-06
22 Hanuman langur Semnopithecus entellus GCA_004025065.1_SemEnt_v1_BIUU SAMN07678111 PRJNA399419 2019-01-15
23 human (GRCh38.p13 2019) Homo sapiens GCF_000001405.39_GRCh38.p13 n/a PRJNA31257 2019-02-28
24 human (WGS:JACSEW01 2021 VGP alt pseudohaplotype) Homo sapiens GCA_016700455.2_mHomSap3.pat SAMN12568975 PRJNA562022 2021-01-19
25 human (WGS:JACSEX01 2021 VGP) Homo sapiens GCA_016695395.2_mHomSap3.mat SAMN12568975 PRJNA562023 2021-01-19
26 human HG002 maternal Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 SAMN03283347 PRJNA794175 2022-02-04
27 human HG002 paternal Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 SAMN03283347 PRJNA794172 2022-02-04
28 human T2T CHM13 v2.0 Homo sapiens GCA_009914755.4_T2T-CHM13v2.0 SAMN03255769 PRJNA559484 2022-01-24
29 lesser dwarf lemur Cheirogaleus medius GCA_004024725.1_CheMed_v1_BIUU SAMN07678072 PRJNA399382 2019-01-15
30 Ma's night monkey Aotus nancymaae GCF_000952055.2_Anan_2.0 SAMN03121886 PRJNA251539 2017-06-09
31 mantled howler monkey Alouatta palliata GCA_004027835.1_AloPal_v1_BIUU SAMN07678036 PRJNA399372 2019-01-16
32 northern white-cheeked gibbon (2019 U. Washington) Nomascus leucogenys GCF_006542625.1_Asia_NLE_v1 SAMN11124083 PRJNA369439 2019-07-02
33 olive baboon (2019 UCSF) Papio anubis GCF_008728515.1_Panubis1.0 SAMN11179045 PRJNA527874 2019-10-02
34 Panamanian white-faced capuchin Cebus imitator GCF_001604975.1_Cebus_imitator-1.0 SAMN04522148 PRJNA298580 2016-04-04
35 Pere David's macaque Macaca thibetana thibetana GCF_024542745.1_ASM2454274v1 SAMN27068423 PRJNA821381 2022-08-09
36 Philippine tarsier Carlito syrichta GCF_000164805.1_Tarsius_syrichta-2.0.1 SAMN02445010 PRJNA20339 2013-09-18
37 pig-tailed macaque Macaca nemestrina GCF_000956065.1_Mnem_1.0 SAMN03121842 PRJNA251427 2015-03-19
38 proboscis monkey Nasalis larvatus GCA_004027105.1_NasLar_v1_BIUU SAMN07678099 PRJNA399408 2019-01-16
39 pygmy chimpanzee (Ulindi refseq 2015) Pan paniscus GCF_000258655.2_panpan1.1 SAMEA1029457 PRJNA49285 2015-08-18
40 pygmy chimpanzee (Mhudiblu) Pan paniscus GCF_013052645.1_Mhudiblu_PPA_v0 SAMN11123633 PRJNA526933 2020-05-15
41 red guenon Erythrocebus patas GCA_004027335.1_EryPat_v1_BIUU SAMN07678082 PRJNA399392 2019-01-16
42 red shanked douc langur Pygathrix nemaeus GCA_004024825.1_PygNem_v1_BIUU SAMN07678108 PRJNA399415 2019-01-15
43 Rhesus monkey (2019 U. Washington) Macaca mulatta GCF_003339765.1_Mmul_10 SAMN09435472 PRJNA476474 2019-02-13
44 ring-tailed lemur (2021 VGP) Lemur catta GCF_020740605.2_mLemCat1.pri SAMN12621102 PRJNA561949 2021-11-04
45 Sclater's lemur (Harlow 2015) Eulemur flavifrons GCA_001262665.1_Eflavifronsk33QCA SAMN03699688 PRJNA284191 2015-08-06
46 silvery gibbon (HMO894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.2_HMol_V2 SAMN12851060 PRJNA575281 2020-02-13
47 slow loris Nycticebus coucang GCA_004027815.1_NycCou_v1_BIUU SAMN07678100 PRJNA399409 2019-01-16
48 small-eared galago Otolemur garnettii GCF_000181295.1_OtoGar3 SAMN02981229 PRJNA16955 2011-03-16
49 sooty mangabey Cercocebus atys GCF_000955945.1_Caty_1.0 SAMN03379531 PRJNA157077 2015-03-19
50 Sumatran orangutan (2018 refseq) Pongo abelii GCF_002880775.1_Susie_PABv2 SAMN06275555 PRJNA369439 2018-01-19
51 tamarin Saguinus imperator GCA_004024885.1_SagImp_v1_BIUU SAMN07678110 PRJNA399417 2019-01-15
52 tufted capuchin Sapajus apella GCF_009761245.1_GSC_monkey_1.0 SAMN13265339 PRJNA588076 2019-12-17
53 Ugandan red Colobus (RC106 v4 2019) Piliocolobus tephrosceles GCF_002776525.4_ASM277652v4 SAMN07735529 PRJNA413051 2019-12-12
54 western lowland gorilla (Kamilah 2019) Gorilla gorilla gorilla GCF_008122165.1_Kamilah_GGO_v0 SAMN11078986 PRJNA369439 2019-08-28
55 white-faced saki Pithecia pithecia GCA_004026645.1_PitPit_v1_BIUU SAMN07678106 PRJNA399413 2019-01-16
56 white-fronted capuchin Cebus albifrons GCA_004027755.1_CebAlb_v1_BIUU SAMN07678068 PRJNA399379 2019-01-16
57 white-tufted-ear marmoset (cj1700 2020) Callithrix jacchus GCF_009663435.1_Callithrix_jacchus_cj1700_1.1 n/a PRJNA566173 2020-05-22
58 white-tufted-ear marmoset (maternal 2020 VGP) Callithrix jacchus GCA_011078405.1_mCalJac1.mat SAMN12368443 PRJNA558086 2020-03-10
59 white-tufted-ear marmoset (paternal 2020 VGP) Callithrix jacchus GCA_011100535.1_mCalJac1.pat SAMN12368443 PRJNA558087 2020-03-10
60 white-tufted-ear marmoset (paternal X 2020 VGP) Callithrix jacchus GCA_011100555.1_mCalJac1.pat.X SAMN12368443 PRJNA597600 2020-03-10

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 59 assemblies assembly stats track stats
Mammals 357 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats