VGP - Vertebrate Genomes Project assembly hub

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project.

How to view the hub

You can load this hub from our Public Hubs page or by clicking these links to any of our official websites:

To manually attach this hub to other genome browsers:

  1. From the blue navigation bar, go to My Data -> Track Hubs
  2. Then select the My Hubs tab and enter this URL into the textbox:
    https://hgdownload.soe.ucsc.edu/hubs/VGP/hub.txt
  3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the VGP Hub Assembly dropdown menu.

See also: assembly statistics

Data resource links

NOTE: Click on the column headers to sort the table by that column
common name and
view in browser
scientific name and
data download
NCBI assembly bioSamplebioProject Taxon ID assembly date
VGP link
class
greater horseshoe bat Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 59479 2019-05-17 mammal
Canada lynx Lynx canadensis GCA_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 61383 2019-07-25 mammal
platypus Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 SAMN08537700 PRJNA489114 9258 2019-02-07 mammal
pale spear-nosed bat Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 89673 2019-02-07 mammal
Anna's hummingbird Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 9244 2019-05-17 bird
zebra finch Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p SAMN02981239 PRJNA489098 59729 2019-05-17 bird
owl parrot Strigops habroptila GCA_004027225.1_bStrHab1_v1.p SAMN09948751 PRJNA489135 2489341 2019-01-18 bird
turtle dove Streptopelia turtur GCA_901699155.1_bStrTur1.1 SAMEA994735 PRJEB32724 177155 2019-06-05 bird
Goodes thornscrub tortoise Gopherus evgoodei GCA_007399415.1_rGopEvg1_v1.p SAMN03496275 PRJNA489103 1825980 2019-07-24 reptile
tiny Cayenne caecilian Microcaecilia unicolor GCA_901765095.1_aMicUni1.1 SAMEA104387962 PRJEB32737 1415580 2019-06-22 amphibian
two-lined caecilian Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 SAMEA104387956 PRJEB32111 194408 2019-06-02 amphibian
flier cichlid Archocentrus centrarchus GCA_007364275.1_fArcCen1 SAMN09948522 PRJNA489129 63155 2019-07-24 fish
climbing perch Anabas testudineus GCA_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 64144 2018-12-19 fish
zig-zag eel Mastacembelus armatus GCA_900324485.2_fMasArm1.2 SAMEA104026378 PRJEB25769 205130 2019-03-16 fish
greater pipefish Syngnathus acus GCA_901709675.1_fSynAcu1.1 SAMEA104381750 PRJEB32741 161584 2019-05-29 fish
eastern happy Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 SAMEA104026430 PRJEB24325 8154 2018-05-30 fish
channel bull blenny Cottoperca gobio GCF_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 56716 2019-02-06 fish
Indian glassy fish Parambassis ranga GCF_900634625.1_fParRan2.1 SAMEA4675621 PRJEB30257 210632 2019-02-06 fish
blunt-snouted clingfish Gouania willdenowi GCF_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 441366 2019-02-06 fish
denticle herring Denticeps clupeoides GCF_900700375.1_fDenClu1.1 SAMEA104129917 PRJEB31545 299321 2019-03-16 fish
reedfish Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 SAMEA104026374 PRJEB31579 27687 2019-03-26 fish
live sharksucker Echeneis naucrates GCF_900963305.1_fEcheNa1.1 SAMEA4966390 PRJEB31992 173247 2019-04-11 fish
Asian bonytongue Scleropages formosus GCF_900964775.1_fSclFor1.1 SAMEA4872123 PRJEB31995 113540 2019-04-11 fish
torafugu Takifugu rubripes GCF_901000725.2_fTakRub1.2 SAMEA104384834 PRJEB31988 31033 2019-06-05 fish