VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of primary assemblies)

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769605.1_bBucAby1.pri 112 1,132,597,561 204 8,074,542 19.24
2 American flamingo Phoenicopterus ruber ruber GCA_009819775.1_bPhoRub2.pri 90 1,246,226,932 280 8,602,116 20.94
3 Anna's hummingbird Calypte anna GCA_003957555.2_bCalAnn1_v1.p 160 1,059,706,240 429 16,096,788 20.87
4 Asian bonytongue Scleropages formosus GCF_900964775.1_fSclFor1.1 72 784,563,014 145 41,360 26.53
5 Atlantic cod Gadus morhua GCF_902167405.1_gadMor3.0 227 669,966,409 1,216 23,573,743 33.47
6 Atlantic halibut Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri 57 596,792,676 290 3,413,390 24.17
7 European turtle dove Streptopelia turtur GCA_901699155.1_bStrTur1.1 357 1,178,928,410 894 3,876,374 21.07
8 blackcap Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri 189 1,066,786,587 413 11,925,354 19.80
9 Blue whale Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 130 2,380,012,384 936 25,929,252 43.78
10 blunt-snouted clingfish Gouania willdenowi GCF_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
11 Korean giant-fin mudskipper Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri 124 752,621,857 700 7,178,561 39.10
12 prehistoric monster fish Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
13 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
14 California sea lion Zalophus californianus GCA_009762305.1_mZalCal1.pri 43 2,408,658,503 122 17,343,033 43.41
15 Canada lynx Lynx canadensis GCF_007474595.1_mLynCan4_v1.p 66 2,408,883,772 848 2,778,737 43.35
16 carmine bee-eater Merops nubicus GCA_009819595.1_bMerNub1.pri 109 1,149,356,202 269 6,055,062 21.59
17 channel bull blenny Cottoperca gobio GCF_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
18 climbing perch Anabas testudineus GCF_900324465.2_fAnaTes1.2 51 555,658,001 266 3,606,496 21.33
19 common brushtail Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri 212 3,359,347,793 1,796 18,696,463 40.57
20 common tern Sterna hirundo GCA_009819605.1_bSteHir1.pri 123 1,229,972,541 205 10,364,610 21.00
21 common yellowthroat Geothlypis trichas GCA_009764595.1_bGeoTri1.pri 278 1,078,128,490 1,479 13,697,790 20.48
22 denticle herring Denticeps clupeoides GCF_900700375.1_fDenClu1.1 460 567,401,054 464 4,648,387 28.83
23 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004875.1_bBalReg1.pri 105 1,221,051,782 144 4,796,037 21.20
24 eastern happy Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 249 880,445,564 490 1,186,663 30.80
25 ermine Mustela erminea GCF_009829155.1_mMusErm1.Pri 94 2,445,217,270 199 21,483,976 40.61
26 Eurasian red squirrel Sciurus vulgaris GCA_902686455.1_mSciVul1.1 638 2,878,591,032 1,177 163,358,994 33.78
27 European starfish Asterias rubens GCF_902459465.1_eAstRub1.3 150 417,601,740 471 148,140 37.45
28 flier cichlid Archocentrus centrarchus GCA_007364275.2_fArcCen1 189 932,947,025 744 16,903,477 30.69
29 Gabon caecilian Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 164 3,779,430,019 433 5,502,713 52.86
30 gilthead seabream Sparus aurata GCF_900880675.1_fSpaAur1.1 176 833,595,063 1,050 342,268 25.72
31 golden eagle Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 142 1,203,454,851 191 4,639,807 19.26
32 Goodes thornscrub tortoise Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p 383 2,298,564,209 562 29,560,319 33.37
33 greater horseshoe bat Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p 135 2,075,785,400 158 7,546,098 34.90
34 greater pipefish Syngnathus acus GCA_901709675.1_fSynAcu1.1 87 324,331,233 43 13,700 25.95
35 hybrid cattle Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 1,435 2,580,764,822 277 6,480,811 47.42
36 hybrid cattle Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 1,250 2,680,953,056 302 1,636,497 47.18
37 Indian glassy fish Parambassis ranga GCF_900634625.1_fParRan2.1 156 551,012,959 1,523 10,561,548 25.10
38 jewelled blenny Salarias fasciatus GCF_902148845.1_fSalaFa1.1 203 797,507,141 602 10,447,897 26.61
39 Kakapo Strigops habroptila GCF_004027225.2_bStrHab1.2.pri 89 1,148,597,545 373 10,544,081 20.53
40 lance-tailed manakin Chiroxiphia lanceolata GCF_009829145.1_bChiLan1.pri 93 1,089,631,598 206 3,303,511 20.07
41 leatherback sea turtle Dermochelys coriacea GCA_009764565.1_rDerCor1.pri 55 2,165,403,198 558 5,729,700 34.13
42 live sharksucker Echeneis naucrates GCF_900963305.1_fEcheNa1.1 38 544,229,245 140 599,356 21.82
43 lumpfish Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri 49 572,902,877 347 10,182,204 28.09
44 milkfish Chanos chanos GCF_902362185.1_fChaCha1.1 31 656,929,047 112 4,230,332 26.35
45 mute swan Cygnus olor GCA_009769625.1_bCygOlo1.pri 181 1,135,009,278 446 10,642,469 21.24
46 New Caledonian crow Corvus moneduloides GCF_009650955.1_bCorMon1.pri 105 1,112,734,094 289 28,870,195 19.58
47 New Zealand spotty Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
48 northern pike Esox lucius GCA_011004845.1_fEsoLuc1.pri 53 918,749,000 112 1,022,735 32.97
49 orbiculate cardinalfish Sphaeramia orbicularis GCF_902148855.1_fSphaOr1.1 340 1,342,662,642 1,844 3,566,081 48.65
50 pale spear-nosed bat Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p 141 2,117,764,065 831 22,966,458 30.49
51 pinecone soldierfish Myripristis murdjan GCF_902150065.1_fMyrMur1.1 87 835,254,674 253 1,865,832 28.16
52 platypus Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 322 1,859,281,749 515 15,158,118 51.26
53 razorbill Alca torda GCA_008658365.1_bAlcTor1_primary 95 1,178,492,568 227 3,561,127 20.12
54 red-crested turaco Tauraco erythrolophus GCA_009769465.1_bTauEry1.pri 140 1,252,271,553 344 26,400,695 22.20
55 red-legged seriema Cariama cristata GCA_009819825.1_bCarCri1.pri 110 1,215,245,693 194 4,933,338 19.73
56 reedfish Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 1,885 3,811,038,701 5,614 238,294,611 44.57
57 river trout Salmo trutta GCF_901001165.1_fSalTru1.1 1,441 2,371,880,186 3,941 73,600,705 52.45
58 sand lizard Lacerta agilis GCF_009819535.1_rLacAgi1.pri 29 1,391,404,169 379 3,491,078 34.50
59 sea lamprey Petromyzon marinus GCF_010993605.1_kPetMar1.pri 1,434 1,089,050,413 930 15,013,687 50.62
60 Siamese fighting fish Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
61 smalltooth sawfish Pristis pectinata GCA_009764475.1_sPriPec2.pri 173 2,267,857,790 698 20,562,876 38.20
62 Swainson's thrush Catharus ustulatus GCF_009819885.1_bCatUst1.pri 161 1,131,616,430 428 12,903,595 22.52
63 thorny skate Amblyraja radiata GCF_010909765.1_sAmbRad1.pri 957 2,558,784,953 3,753 190,972,533 52.28
64 torafugu Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
65 tufted duck Aythya fuligula GCF_009819795.1_bAytFul2.pri 105 1,127,004,725 163 9,417,397 22.39
66 two-lined caecilian Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 44.11
67 vaquita Phocoena sinus GCF_008692025.1_mPhoSin1.pri 64 2,371,524,154 212 8,045,651 43.65
68 Western terrestrial garter snake Thamnophis elegans GCF_009769535.1_rThaEle1.pri 365 1,672,190,305 1,518 38,185,703 42.64
69 yellow-throated sandgrouse Pterocles gutturalis GCA_009769525.1_bPteGut1.pri 89 1,127,422,757 242 4,303,557 21.19
70 zebra finch Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
71 zebra finch Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 541 1,106,297,559 789 21,820,589 20.08
72 zig-zag eel Mastacembelus armatus GCF_900324485.2_fMasArm1.2 123 591,951,587 238 13,231,344 23.47
TOTALS:total assembly count 72 22,151 108,018,646,171 57,379 1,405,145,964  
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent

Alternate sets of VGP assemblies
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded