VGP - Vertebrate Genomes Project assembly hub

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/VGP/altHub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the VGP Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statistics, track statistics <== additional information for these assemblies.


Listings:

  (from RepeatModeler masking)

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser		 scientific name
and data download		 NCBI assembly BioSample BioProject assembly date,
source link		 class
VGP link
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt SAMN12614799 PRJNA561886 2019-12-19 birds
2 American flamingo Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt SAMN12614931 PRJNA561889 2019-12-23 birds
3 American shad (fAloSap1 alternate hap 2021) Alosa sapidissima GCA_018492705.1_fAloSap1.alt SAMN18857608 PRJNA728146 2021-05-24 fish
4 Anna's hummingbird Calypte anna GCA_003957575.1_bCalAnn1_v1.h SAMN02265252 PRJNA489140 2018-12-20 birds
5 Aristotle's catfish (alternate hap 2022) Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype SAMEA12595289 PRJEB55687 2022-09-16 fish
6 Asian bonytongue Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype SAMEA4872123 PRJEB31996 2019-04-11 fish
7 Asiatic elephant (mEleMax1 alternate hap 2022) Elephas maximus indicus GCA_024166345.1_mEleMax1_alternate_haplotype SAMN29174328 PRJNA850270 2022-07-05 mammals
8 Atlantic cod Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype SAMEA5574046 PRJEB33454 2019-07-16 fish
9 Atlantic halibut Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt SAMN12629501 PRJNA562002 2019-12-27 fish
10 Atlantic horse mackerel (alternate hap 2021) Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype SAMEA7524396 PRJEB42173 2021-11-26 fish
11 Australian echidna (mTacAcu1 alternate hap 2020) Tachyglossus aculeatus GCA_015852515.1_mTacAcu1.alt SAMN12634963 PRJNA607238 2020-12-08 mammals
12 banded archerfish (fToxJac2 alternate hap 2021) Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt SAMN18445299 PRJNA717045 2021-04-15 fish
13 barbel (alternate hap 2022) Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype SAMEA13335783 PRJEB52076 2022-04-16 fish
14 Barn swallow (bHirRus1 v3 alternate hap 2021) Hirundo rustica GCA_015227815.3_bHirRus1.alt.v3 SAMN14675488 PRJNA636191 2021-11-24 birds
15 black rhinoceros (alternate hap 2021) Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon SAMN22047685 PRJNA773943 2021-11-10 mammals
16 blackcap Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt SAMN12369542 PRJNA558065 2019-12-23 birds
17 Blainville's beaked whale (mMesDen1 alternate hap 2022) Mesoplodon densirostris GCA_025094165.1_mMesDen1_alternate_haplotype SAMN29828597 PRJNA873679 2022-09-08 mammals
18 Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020) Balaenoptera musculus GCA_008658375.2_mBalMus1.alt.v2 SAMN12287136 PRJNA554523 2020-09-30 mammals
19 blunt-snouted clingfish Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype SAMEA104026382 PRJEB30360 2019-02-07 fish
20 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt SAMN12623618 PRJNA561966 2021-03-30 fish
21 bonti-bonti (fTelBon1 alternate hap 2022) Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype SAMEA8592627 PRJEB51591 2022-03-23 fish
22 butterfish (fScaArg1 alternate hap 2021) Scatophagus argus GCA_020382915.1_fScaArg1.alt SAMN12623616 PRJNA749580 2021-10-07 fish
23 California sea lion (mZalCal1 alternate hap 2020) Zalophus californianus GCA_009762295.2_mZalCal1.alt.v2 SAMN12368149 PRJNA559674 2020-06-12 mammals
24 Canada lynx (LIC74 v2 alternate hap 2020) Lynx canadensis GCA_007474575.2_mLynCan4.alt.v2 SAMN09948483 PRJNA489108 2020-06-12 mammals
25 carmine bee-eater Merops nubicus GCA_009819585.1_bMerNub1.alt SAMN12621035 PRJNA561895 2019-12-23 birds
26 channel bull blenny Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype SAMEA104242975 PRJEB30256 2019-02-07 fish
27 chicken (Cobb bGalGal5 alternate hap 2022) Gallus gallus GCA_027408205.1_bGalGal5.alt SAMN28017485 PRJNA838371 2022-12-27 birds
28 chicken (Ross bGalGal4 alternate hap 2022) Gallus gallus GCA_027408255.1_bGalGal4.alt SAMN28017486 PRJNA838368 2022-12-27 birds
29 chicken (matHap) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b SAMN15960293 PRJNA660757 2021-01-19 birds
30 chicken (patHap) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-01-19 birds
31 chub mackerel (fScoJap1 alternate hap 2022) Scomber japonicus GCA_027409835.1_fScoJap1.alt SAMN32224830 PRJNA912109 2022-12-27 fish
32 climbing perch Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype SAMEA104026376 PRJEB30391 2019-02-07 fish
33 common brushtail (alternate hap 2020) Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt SAMN12629507 PRJNA562013 2020-03-09 mammals
34 common cuckoo (bCucCan1 alternate hap 2021) Cuculus canorus GCA_017976305.1_bCucCan1.alt SAMN12629508 PRJNA562016 2021-04-15 birds
35 common myna (bArcTri1 alternate hap 2023) Acridotheres tristis GCA_027559525.1_bAcrTri1.alt SAMN28454388 PRJNA839506 2023-01-03 birds
36 common swift (bApuApu2 alternate hap 2021) Apus apus GCA_020740585.1_bApuApu2.alt.cur SAMN22785356 PRJNA776337 2021-11-03 birds
37 common tern Sterna hirundo GCA_009819645.1_bSteHir1.alt SAMN12369541 PRJNA558063 2019-12-23 birds
38 common yellowthroat Geothlypis trichas GCA_009764545.1_bGeoTri1.alt SAMN12631222 PRJNA589704 2019-12-18 birds
39 convict blenny (fPhoLeu1 alternate hap 2021) Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt SAMN12623617 PRJNA749576 2021-10-15 fish
40 copperband butterflyfish (fCheRos1 alternate hap 2021) Chelmon rostratus GCA_017976315.1_fCheRos1.alt SAMN12623620 PRJNA561970 2021-04-15 fish
41 cunner (fTauAds1 alternate hap 2021) Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur SAMN22589422 PRJNA774879 2021-11-05 fish
42 denticle herring Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype SAMEA104129917 PRJEB31546 2019-03-27 fish
43 Downy woodpecker (bDryPub1 alternate hap 2020) Dryobates pubescens GCA_014839825.1_bDryPub1.alt SAMN12629497 PRJNA561992 2020-09-30 birds
44 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt SAMN12615749 PRJNA561891 2020-02-24 birds
45 electric eel (fEleEle1 alternate hap 2020) Electrophorus electricus GCA_013347915.1_fEleEle1.alt SAMN12623625 PRJNA561982 2020-06-12 fish
46 epaulette shark (alternate hap sHemOce1 2021) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon SAMN22550098 PRJNA774309 2021-11-05 sharks
47 ermine (alternate hap 2020) Mustela erminea GCA_009829165.1_mMusErm1.alt SAMN12611999 PRJNA561930 2020-01-03 mammals
48 Eurasian nightjar (alternate hap 2021) Caprimulgus europaeus GCA_907165095.1_bCapEur3.1_alternate_haplotype SAMEA7524394 PRJEB44541 2021-05-15 birds
49 Eurpoean golden plover (bPluApr1 alternate hap 2021) Pluvialis apricaria GCA_017639475.1_bPluApr1.alt SAMN18353970 PRJNA715923 2021-03-30 birds
50 European plaice (alternate hap 2022) Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype SAMEA13853390 PRJEB57576 2022-11-27 fish
51 European robin (alternate hap 2021) Erithacus rubecula GCA_903797565.2_bEriRub2.2_alternate_haplotype SAMEA4760689 PRJEB38657 2021-03-21 birds
52 Eurasian red squirrel (alternate hap 2019) Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype SAMEA994733 PRJEB35379 2019-11-26 mammals
53 European starfish Asterias rubens GCA_902459445.1_eAstRub1.2_alternate_haplotype SAMEA994741 PRJEB33973 2019-08-16 echinoderm
54 European turtle dove (v1.2 alternate hap 2021) Streptopelia turtur GCA_901699165.2_bStrTur1.2_alternate_haplotype SAMEA994735 PRJEB32725 2021-04-15 birds
55 flier cichlid Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h SAMN09948522 PRJNA489130 2019-07-24 fish
56 freshwater garfish (fXenCan1 alternate hap 2020) Xenentodon cancila GCA_014839645.1_fXenCan1.alt SAMN12623622 PRJNA561974 2020-09-30 fish
57 Gaboon caecilian Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype SAMEA104387963 PRJEB33991 2019-08-18 amphibians
58 garden warbler (bSylBor1 alternate hap 2020) Sylvia borin GCA_014839765.1_bSylBor1.alt SAMN12618613 PRJNA561946 2020-09-30 birds
59 gilthead seabream Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype SAMEA104384835 PRJEB31902 2019-07-11 fish
60 golden eagle (v1.4 alternate hap 2021) Aquila chrysaetos chrysaetos GCA_902153765.2_bAquChr1.4_alternate_haplotype SAMEA994725 PRJEB33298 2021-03-26 birds
61 Goodes thornscrub tortoise Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt SAMN03496275 PRJNA489104 2019-07-24 reptiles
62 great potoo (bNycGra1 alternate hap 2020) Nyctibius grandis GCA_013368595.1_bNycGra1.alt SAMN12622411 PRJNA562021 2020-06-23 birds
63 greater horseshoe bat (MPI-CBG alternate hap 2019) Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h SAMN09948510 PRJNA489105 2019-01-28 mammals
64 greater pipefish Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype SAMEA104381750 PRJEB32742 2019-06-02 fish
65 gyrfalcon (bFalRus1 alternate hap 2020) Falco rusticolus GCA_015220155.1_bFalRus1.alt SAMN12629496 PRJNA561989 2020-11-02 birds
66 Harpy eagle (bHarHar1 alternate hap 2022) Harpia harpyja GCA_026419925.1_bHarHar1 SAMN31530492 PRJNA896140 2022-11-25 birds
67 Hawaiian crow (bCorHaw1 alternate hap 2021) Corvus hawaiiensis GCA_020740675.1_bCorHaw1.alt.cur SAMN22550278 PRJNA774316 2021-11-03 birds
68 honeycomb rockfish (fSebUmb1 alternate hap 2020) Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt SAMN12629503 PRJNA562006 2020-11-02 fish
69 house finch (bHaeMex1 alternate hap 2022) Haemorhous mexicanus GCA_027406555.1_bHaeMex1.alt SAMN28453576 PRJNA839498 2022-12-27 birds
70 human (WGS:JACSEW01 2021 alternate hap) Homo sapiens GCA_016700455.2_mHomSap3.pat SAMN12568975 PRJNA562022 2021-01-19 mammals
71 Humboldt's penguin (bSphHub1 alternate hap 2022) Spheniscus humboldti GCA_027474345.1_bSphHub1.alt SAMN28408465 PRJNA838344 2022-12-27 birds
72 Indian glassy fish Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype SAMEA4675621 PRJEB30258 2019-02-12 fish
73 jewelled blenny Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype SAMEA4966329 PRJEB33183 2019-07-03 fish
74 kagu (bRhyJub1 alternate hap 2023) Rhynochetos jubatus GCA_027595965.1_bRhyJub1.alt SAMN31802033 PRJNA916496 2023-01-06 birds
75 Kakapo Strigops habroptila GCA_004011185.1_bStrHab1_v1.h SAMN09948751 PRJNA489134 2019-01-10 birds
76 Korean giant-fin mudskipper Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt SAMN12629500 PRJNA561999 2020-01-03 fish
77 lammergeier (bGypBar2 alternate hap 2023) Gypaetus barbatus GCA_028017155.1_bGypBar2.alt SAMN32256411 PRJNA912842 2023-01-26 birds
78 lance-tailed manakin Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt SAMN12620979 PRJNA561944 2020-01-03 birds
79 lanner falcon (bFalBia1 alternate hap 2022) Falco biarmicus GCA_023634305.1_bFalBia1.alt SAMN28688289 PRJNA842827 2022-06-01 birds
80 largescale foureyes (fAnaAna1 alternate hap 2020) Anableps anableps GCA_014839705.1_fAnaAna1.alt SAMN12623628 PRJNA561986 2020-09-30 fish
81 leatherback sea turtle Dermochelys coriacea GCA_009762595.1_rDerCor1.alt SAMN12629498 PRJNA561994 2019-12-18 reptiles
82 lesser kestrel (alternate hap 2021) Falco naumanni GCA_017639645.1_bFalNau1.mat SAMN16870685 PRJNA702665 2021-03-30 birds
83 lesser rhea (bPtePen1 alternate hap 2023) Rhea pennata GCA_028389885.1_bPtePen1.alt SAMN32606345 PRJNA918802 2023-02-01 birds
84 lesser salmon catfish (fNeoGra1 alternate hap 2023) Neoarius graeffei GCA_027579805.1_fNeoGra1.alt SAMN28453209 PRJNA839495 2023-01-06 fish
85 lesser Egyptian jerboa (alternate hap 2021) Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon SAMN20391724 PRJNA773798 2021-11-03 mammals
86 live sharksucker Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype SAMEA4966390 PRJEB31993 2019-04-11 fish
87 long-tailed hermit (PSU5 alternate hap 2022) Phaethornis superciliosus GCA_023637925.1_DD_ASM_B1a SAMN23532249 PRJNA785156 2022-06-01 birds
88 longspined bullhead (fTauBub2.1 alternate hap 2021) Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype SAMEA7522994 PRJEB45316 2021-07-07 fish
89 lumpfish Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt SAMN12629502 PRJNA562004 2019-12-19 fish
90 maguari stork (bCicMag1 alternate hap 2021) Ciconia maguari GCA_017639665.1_bCicMag1.alt SAMN18353822 PRJNA715732 2021-03-30 birds
91 meadow viper (alternate hap 2022) Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype SAMEA12832258 PRJEB57182 2022-10-30 reptiles
92 milkfish Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype SAMEA5159473 PRJEB33881 2019-08-16 fish
93 monito del monte (mDroGli1 alternate hap 2021) Dromiciops gliroides GCA_019395325.1_mDroGli1.alt SAMN18857598 PRJNA728142 2021-07-29 mammals
94 mute swan (bCygOlo1 v2 alternate hap 2021) Cygnus olor GCA_009769485.2_bCygOlo1.alt.v2 SAMN12621369 PRJNA561961 2021-03-30 birds
95 Nelson's sparrow (bAmmNel1 alternate hap 2023) Ammospiza nelsoni GCA_027579665.1_bAmmNel1.alt SAMN28421656 PRJNA839457 2023-01-06 birds
96 New Caledonian crow Corvus moneduloides GCA_009651025.1_bCorMon1.alt SAMN12368441 PRJNA560982 2019-11-12 birds
97 New Zealand spotty Notolabrus celidotus GCA_009762545.1_fNotCel1.alt SAMN12623201 PRJNA561957 2019-12-17 fish
98 northern goshawk (bAccGen1 v1 alternate hap 2022) Accipiter gentilis GCA_929447715.1_bAccGen1.1_alternate_haplotype SAMEA8235650 PRJEB50703 2022-02-13 birds
99 northern pike Esox lucius GCA_011004835.1_fEsoLuc1.alt SAMN12623624 PRJNA561978 2020-02-24 fish
100 Norway rat BN7 haplotype Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype SAMN16261960 PRJNA663241 2020-11-04 mammals
101 orbiculate cardinalfish Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype SAMEA4966328 PRJEB33176 2019-07-03 fish
102 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020) Phyllostomus discolor GCA_004115245.2_mPhyDis1.alti.v3 SAMN09948786 PRJNA489142 2020-05-11 mammals
103 peladilla (fAplTae1 alternate hap 2021) Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt SAMN12623621 PRJNA561972 2021-03-30 fish
104 peregrine falcon (bFalPer1 alternate hap 2022) Falco peregrinus GCA_023634185.1_bFalPer1.alt SAMN28688290 PRJNA842833 2022-06-01 birds
105 Philippine flying lemur (mCynVol1 alternate hap 2022) Cynocephalus volans GCA_027409165.1_mCynVol1.alt SAMN32206947 PRJNA911845 2022-12-27 mammals
106 pinecone soldierfish Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype SAMEA4872133 PRJEB33187 2019-07-03 fish
107 platypus (alternate hap Pmale09 2020) Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 SAMN08537700 PRJNA489115 2020-04-06 mammals
108 plumbeous ibis (bTheCae1 alternate hap 2021) Theristicus caerulescens GCA_020745805.1_bTheCae1.alt.cur SAMN22550094 PRJNA774321 2021-11-05 birds
109 prehistoric monster fish Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype SAMEA104129913 PRJEB34605 2019-09-30 fish
110 razorbill Alca torda GCA_008658355.1_bAlcTor1_alternate SAMN12292087 PRJNA554521 2019-09-23 birds
111 red-crested turaco Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt SAMN12621036 PRJNA561948 2019-12-18 birds
112 red-bellied piranha (fPygNat1 alternate hap 2020) Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt SAMN12623623 PRJNA561976 2020-11-02 fish
113 red-legged seriema Cariama cristata GCA_009819485.1_bCarCri1.alt SAMN12614807 PRJNA561893 2019-12-23 birds
114 Red-fronted tinkerbird (bPogPus1 alternate hap 2020) Pogoniulus pusillus GCA_015220175.1_bPogPus1.alt SAMN15098508 PRJNA637954 2020-11-02 birds
115 reedfish Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype SAMEA104026374 PRJEB31582 2019-03-27 fish
116 rifleman (bAcaChl1 alternate hap 2021) Acanthisitta chloris GCA_016880875.1_bAcaChl1.alt SAMN16442762 PRJNA561955 2021-02-10 birds
117 rock gunnel (alternate hap 2021) Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype SAMEA7522838 PRJEB45448 2021-11-18 fish
118 rock ptarmigan (bLagMut1 alternate hap 2022) Lagopus muta GCA_023344045.1_bLagMut1_alternate SAMN25144835 PRJNA836585 2022-05-12 birds
119 Saker falcon (bFalChe1 alternate hap 2022) Falco cherrug GCA_023634115.1_bFalChe1.alt SAMN28688204 PRJNA842830 2022-06-01 birds
120 saltmarsh sparrow (bAmmCau1 alternate hap 2023) Ammodramus caudacutus GCA_027887135.1_bAmmCau1.alt SAMN28421630 PRJNA839451 2023-01-17 birds
121 sand lizard Lacerta agilis GCA_009819545.1_rLacAgi1.alt SAMN12629509 PRJNA562019 2019-12-23 reptiles
122 sea lamprey Petromyzon marinus GCA_010993595.1_kPetMar1.alt SAMN12629506 PRJNA562012 2020-02-24 otherChordates
123 Siamese fighting fish Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype SAMEA104381735 PRJEB30366 2019-02-07 fish
124 smalltooth sawfish Pristis pectinata GCA_009764485.1_sPriPec2.alt SAMN12629505 PRJNA562010 2019-12-18 sharks
125 South Island takahe (alternate hap 2021) Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon SAMN22550412 PRJNA774332 2021-11-08 birds
126 southern bluefin tuna (alternate hap 2021) Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype SAMEA8654747 PRJEB46020 2021-07-07 fish
127 southern tamandua (mTamTet1 alternate hap 2022) Tamandua tetradactyla GCA_023853755.1_mTamTet1.alt SAMN12612337 PRJNA561940 2022-06-22 mammals
128 southern two-toed sloth (mChoDid1 alternate hap 2020) Choloepus didactylus GCA_015220265.1_mChoDid1.alt SAMN12612024 PRJNA561938 2020-11-02 mammals
129 stone loach (alternate hap 2022) Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype SAMEA11296540 PRJEB56421 2022-10-08 fish
130 striped catfish (fPanHyp1 alternate hap 2022) Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt SAMN32348883 PRJNA914798 2022-12-27 fish
131 Suruca trogon (bTroSur1 alternate hap 2021) Trogon surrucura GCA_020746095.1_bTroSur1.alt.cur SAMN22550082 PRJNA774296 2021-11-05 birds
132 Swainson's thrush (bCatUst1 v2 alternate hap 2020) Catharus ustulatus GCA_009819505.2_bCatUst1.alt.v2 SAMN12618602 PRJNA561934 2020-11-05 birds
133 swamp sparrow (bMelGeo1 alternate hap 2023) Melospiza georgiana GCA_028019105.1_bMelGeo1.alt SAMN22787412 PRJNA915610 2023-01-26 birds
134 tawny frogmouth (bPodStr1 alternate hap 2023) Podargus strigoides GCA_028020675.1_bPodStr1.alt SAMN31801959 PRJNA912328 2023-01-26 birds
135 thorny skate Amblyraja radiata GCA_010909745.1_sAmbRad1.alt SAMN09948523 PRJNA591368 2020-02-14 sharks
136 tiny Cayenne caecilian Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype SAMEA104387962 PRJEB32738 2019-07-08 amphibians
137 torafugu Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype SAMEA104384834 PRJEB31989 2019-06-05 fish
138 tufted duck Aythya fuligula GCA_009819845.1_bAytFul2.alt SAMN12621346 PRJNA561953 2019-12-23 birds
139 two-lined caecilian Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype SAMEA104387956 PRJEB32112 2019-06-02 amphibians
140 vaquita (alternate hap mPhoSin1 2019) Phocoena sinus GCA_008692045.1_mPhoSin1.alt SAMN12325353 PRJNA557832 2019-09-24 mammals
141 warty frogfish (fAntMac1 alternate hap 2020) Antennarius maculatus GCA_013347815.1_fAntMac1.alt SAMN12623626 PRJNA561980 2020-06-12 fish
142 Western terrestrial garter snake Thamnophis elegans GCA_009769695.1_rThaEle1.alt SAMN12629499 PRJNA561997 2019-12-19 reptiles
143 whiskered treeswift (bHemCom1 alternate hap 2021) Hemiprocne comata GCA_020745695.1_bHemCom1.alt.cur SAMN22588383 PRJNA774830 2021-11-05 birds
144 white-tailed eagle (bHalAlb1.1 alternate hap 2022) Haliaeetus albicilla GCA_947461935.1_bHalAlb1.1_alternate_haplotype SAMEA12857288 PRJEB57864 2022-12-02 birds
145 white-toothed pygmy shrew (mSunEtr1 alternate hap 2022) Suncus etruscus GCA_024140225.1_mSunEtr1.alt.cur SAMN28420931 PRJNA839355 2022-07-05 mammals
146 yellow-throated sandgrouse Pterocles gutturalis GCA_009769505.1_bPteGut1.alt SAMN12623217 PRJNA561959 2019-12-19 birds
147 yellowfin seabream (v.2019 alternate hap 2020) Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype SAMN16236878 PRJEB40701 2020-10-12 fish
148 yellowfin tuna (alternate hap 2021) Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype SAMEA8654749 PRJEB47266 2021-09-15 fish
149 zebra finch (alternate hap Blue55 v1 2020) Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt SAMN09946140 PRJNA489187 2020-01-13 birds
150 zebra finch (Black17 v1.4 alternate hap 2021) Taeniopygia guttata GCA_003957525.2_bTaeGut1.4.alt SAMN02981239 PRJNA489099 2021-04-28 birds
151 zebrafish (fDanRer4 alternate hap 2022) Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype SAMEA14088276 PRJEB53408 2022-06-17 fish
152 zig-zag eel Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype SAMEA104026378 PRJEB31553 2019-04-01 fish

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies