VGP - Vertebrate Genomes Project assembly hub

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statistics, track statistics <== additional information for these assemblies.

Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Listings:

  (from RepeatModeler masking)

• families fasta.gz list of URLs for the custom library created by the RepeatModeler run
• assembly 2bit file list of URLs as masked with the RepeatModeler + TRF/simpleRepeats with period of 12 or less
• the rmod.log files from each RepeatModeler run
• default GenArk 2bit file list of URLs as masked with the ordinary RepeatMasker + TRF/simpleRepeats with period of 12 or less
• this data table in tab-separated file text format (including TBD not working yet, or in VGP collection but not on the alignment list)

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The class VGP link provides access to the VGP GenomeArk page for that genome.
The other links provide access to NCBI resources for these assemblies.

count	common name and view in UCSC browser[IGV browser]	scientific name and data download	NCBI assembly	BioSample	BioProject	assembly date, source link	class VGP link
1	Abyssinian ground-hornbill[IGV]	Bucorvus abyssinicus	GCA_009769595.1_bBucAby1.alt	SAMN12614799	PRJNA561886	2019-12-19	birds
2	Aeolian wall lizard (La Canna islet rPodRaf1 alternate hap 2022)[IGV]	Podarcis raffonei	GCA_027172095.1_rPodRaf1.alt	SAMN28455423	PRJNA839508	2022-12-21	reptiles
3	African savanna elephant (hap2 mLoxAfr1 2023)[IGV]	Loxodonta africana	GCA_030014295.1_mLoxAfr1.hap2	SAMN32756554	PRJNA924322	2023-05-16	mammals
4	American flamingo[IGV]	Phoenicopterus ruber ruber	GCA_009819805.1_bPhoRub2.alt	SAMN12614931	PRJNA561889	2019-12-23	birds
5	American pika (hap2 mOchPri1 2023)[IGV]	Ochotona princeps	GCA_030435715.1_mOchPri1.hap2	SAMN35822658	PRJNA986274	2023-07-13	mammals
6	American shad (fAloSap1 alternate hap 2021)[IGV]	Alosa sapidissima	GCA_018492705.1_fAloSap1.alt	SAMN18857608	PRJNA728146	2021-05-24	fish
7	Anna's hummingbird[IGV]	Calypte anna	GCA_003957575.1_bCalAnn1_v1.h	SAMN02265252	PRJNA489140	2018-12-20	birds
8	Antarctic lanternfish (alternate hap 2023)[IGV]	Electrona antarctica	GCA_951214905.1_fEleAnt2.1_alternate_haplotype	SAMEA8748807	PRJEB61833	2023-05-08	fish
9	Aristotle's catfish (alternate hap 2022)[IGV]	Silurus aristotelis	GCA_946807865.1_fSilAri3.1_alternate_haplotype	SAMEA12595289	PRJEB55687	2022-09-16	fish
10	Asian bonytongue[IGV]	Scleropages formosus	GCA_900964985.2_fSclFor1.1_alternate_haplotype	SAMEA4872123	PRJEB31996	2019-04-11	fish
11	Asiatic elephant (mEleMax1 alternate hap 2022)[IGV]	Elephas maximus indicus	GCA_024166345.1_mEleMax1_alternate_haplotype	SAMN29174328	PRJNA850270	2022-07-05	mammals
12	Atlantic cod[IGV]	Gadus morhua	GCA_902167395.1_gadMor3.0_alternate_haplotype	SAMEA5574046	PRJEB33454	2019-07-16	fish
13	Atlantic halibut[IGV]	Hippoglossus hippoglossus	GCA_009819745.1_fHipHip1.alt	SAMN12629501	PRJNA562002	2019-12-27	fish
14	Atlantic horse mackerel (alternate hap 2021)[IGV]	Trachurus trachurus	GCA_905171655.2_fTraTra1.2_alternate_haplotype	SAMEA7524396	PRJEB42173	2021-11-26	fish
15	Atlantic stingray (hap2 2023)[IGV]	Hypanus sabinus	GCA_030144785.1_sHypSab1.hap2	SAMN32745077	PRJNA924071	2023-06-05	sharks
16	Australian echidna (mTacAcu1 alternate hap 2020)[IGV]	Tachyglossus aculeatus	GCA_015852515.1_mTacAcu1.alt	SAMN12634963	PRJNA607238	2020-12-08	mammals
17	banded archerfish (fToxJac2 alternate hap 2021)[IGV]	Toxotes jaculatrix	GCA_017976295.1_fToxJac2.alt	SAMN18445299	PRJNA717045	2021-04-15	fish
18	barbel (alternate hap 2022)[IGV]	Barbus barbus	GCA_936446605.1_fBarBab1.1_alternate_haplotype	SAMEA13335783	PRJEB52076	2022-04-16	fish
19	Barn swallow (bHirRus1 v3 alternate hap 2021)[IGV]	Hirundo rustica	GCA_015227815.3_bHirRus1.alt.v3	SAMN14675488	PRJNA636191	2021-11-24	birds
20	black rhinoceros (alternate hap 2021)[IGV]	Diceros bicornis minor	GCA_020826835.1_mDicBic1.pat.decon	SAMN22047685	PRJNA773943	2021-11-10	mammals
21	black-capped chickadee (hap2 2023)[IGV]	Poecile atricapillus	GCA_030490855.1_bPoeAtr1.hap2	SAMN35074507	PRJNA972430	2023-07-18	birds
22	blackcap[IGV]	Sylvia atricapilla	GCA_009819715.1_bSylAtr1.alt	SAMN12369542	PRJNA558065	2019-12-23	birds
23	Blainville's beaked whale (mMesDen1 alternate hap 2022)[IGV]	Mesoplodon densirostris	GCA_025094165.1_mMesDen1_alternate_haplotype	SAMN29828597	PRJNA873679	2022-09-08	mammals
24	Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020)[IGV]	Balaenoptera musculus	GCA_008658375.2_mBalMus1.alt.v2	SAMN12287136	PRJNA554523	2020-09-30	mammals
25	blue-and-yellow macaw (hap2 2023)[IGV]	Ara ararauna	GCA_028858555.1_bAraAra1.hap2	SAMN33059336	PRJNA931363	2023-02-24	birds
26	blunt-snouted clingfish[IGV]	Gouania willdenowi	GCA_900650505.1_fGouWil2.1_alternate_haplotype	SAMEA104026382	PRJEB30360	2019-02-07	fish
27	Boeseman's rainbowfish (fMelBoe1 alternate hap 2021)[IGV]	Melanotaenia boesemani	GCA_017639755.1_fMelBoe1.alt	SAMN12623618	PRJNA561966	2021-03-30	fish
28	bonti-bonti (fTelBon1 alternate hap 2022)[IGV]	Telmatherina bonti	GCA_933228925.1_fTelBon1.1_alternate_haplotype	SAMEA8592627	PRJEB51591	2022-03-23	fish
29	Brauer's lanternfish (alternate hap 2023)[IGV]	Gymnoscopelus braueri	GCA_963281105.1_fGymBra2.1_alternate_haplotype	SAMEA12815494	PRJEB65069	2023-08-20	fish
30	butterfish (fScaArg1 alternate hap 2021)[IGV]	Scatophagus argus	GCA_020382915.1_fScaArg1.alt	SAMN12623616	PRJNA749580	2021-10-07	fish
31	California sea lion (mZalCal1 alternate hap 2020)[IGV]	Zalophus californianus	GCA_009762295.2_mZalCal1.alt.v2	SAMN12368149	PRJNA559674	2020-06-12	mammals
32	Canada lynx (LIC74 v2 alternate hap 2020)[IGV]	Lynx canadensis	GCA_007474575.2_mLynCan4.alt.v2	SAMN09948483	PRJNA489108	2020-06-12	mammals
33	carmine bee-eater[IGV]	Merops nubicus	GCA_009819585.1_bMerNub1.alt	SAMN12621035	PRJNA561895	2019-12-23	birds
34	channel bull blenny[IGV]	Cottoperca gobio	GCA_900634435.1_fCotGob3.1_alternate_haplotype	SAMEA104242975	PRJEB30256	2019-02-07	fish
35	chicken (Cobb bGalGal5 alternate hap 2022)[IGV]	Gallus gallus	GCA_027408205.1_bGalGal5.alt	SAMN28017485	PRJNA838371	2022-12-27	birds
36	chicken (matHap)[IGV]	Gallus gallus	GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b	SAMN15960293	PRJNA660757	2021-01-19	birds
37	chicken (patHap)[IGV]	Gallus gallus	GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w	SAMN15960293	PRJNA660758	2021-01-19	birds
38	chicken (Ross bGalGal4 alternate hap 2022)[IGV]	Gallus gallus	GCA_027408255.1_bGalGal4.alt	SAMN28017486	PRJNA838368	2022-12-27	birds
39	Chinese pangolin (hap2 mManPen7 2023)[IGV]	Manis pentadactyla	GCA_030020945.1_mManPen7.hap2	SAMN32757332	PRJNA924340	2023-05-16	mammals
40	chub mackerel (fScoJap1 alternate hap 2022)[IGV]	Scomber japonicus	GCA_027409835.1_fScoJap1.alt	SAMN32224830	PRJNA912109	2022-12-27	fish
41	climbing perch[IGV]	Anabas testudineus	GCA_900650485.1_fAnaTes1.2_alternate_haplotype	SAMEA104026376	PRJEB30391	2019-02-07	fish
42	clouded leopard (mNeoNeb1 alternate hap 2023)[IGV]	Neofelis nebulosa	GCA_028018655.1_mNeoNeb1.alt	SAMN31801981	PRJNA915743	2023-01-26	mammals
43	common brushtail (alternate hap 2020)[IGV]	Trichosurus vulpecula	GCA_011100645.1_mTriVul1.alt	SAMN12629507	PRJNA562013	2020-03-09	mammals
44	common cuckoo (bCucCan1 alternate hap 2021)[IGV]	Cuculus canorus	GCA_017976305.1_bCucCan1.alt	SAMN12629508	PRJNA562016	2021-04-15	birds
45	common frog (alternate hap 2021)[IGV]	Rana temporaria	GCA_905171725.1_aRanTem1.1_alternate_haplotype	SAMEA7521635	PRJEB42170	2021-01-28	amphibians
46	common myna (bArcTri1 alternate hap 2023)[IGV]	Acridotheres tristis	GCA_027559525.1_bAcrTri1.alt	SAMN28454388	PRJNA839506	2023-01-03	birds
47	common pipistrelle (alternate hap 2020)[IGV]	Pipistrellus pipistrellus	GCA_903992515.1_mPipPip1.1_alternate_haplotype	SAMEA994724	PRJEB39565	2020-08-04	mammals
48	common sole (alternate hap 2023)[IGV]	Solea solea	GCA_958295035.1_fSolSol10.1_alternate_haplotype	SAMEA10984647	PRJEB63670	2023-07-06	fish
49	common swift (bApuApu2 alternate hap 2021)[IGV]	Apus apus	GCA_020740585.1_bApuApu2.alt.cur	SAMN22785356	PRJNA776337	2021-11-03	birds
50	common tern[IGV]	Sterna hirundo	GCA_009819645.1_bSteHir1.alt	SAMN12369541	PRJNA558063	2019-12-23	birds
51	common toad (alternate hap 2021)[IGV]	Bufo bufo	GCA_905171715.1_aBufBuf1.1_alternate_haplotype	SAMEA7521636	PRJEB42169	2021-01-28	amphibians
52	common yellowthroat[IGV]	Geothlypis trichas	GCA_009764545.1_bGeoTri1.alt	SAMN12631222	PRJNA589704	2019-12-18	birds
53	convict blenny (fPhoLeu1 alternate hap 2021)[IGV]	Pholidichthys leucotaenia	GCA_020510965.1_fPhoLeu1.alt	SAMN12623617	PRJNA749576	2021-10-15	fish
54	copperband butterflyfish (fCheRos1 alternate hap 2021)[IGV]	Chelmon rostratus	GCA_017976315.1_fCheRos1.alt	SAMN12623620	PRJNA561970	2021-04-15	fish
55	Cretan wall lizard (alternate hap 2023)[IGV]	Podarcis cretensis	GCA_951804955.1_rPodCre2.1_alternate_haplotype	SAMEA12110019	PRJEB62766	2023-06-02	reptiles
56	crucian carp (alternate hap 2023)[IGV]	Carassius carassius	GCA_963082795.1_fCarCar2.1_alternate_haplotype	SAMEA11296534	PRJEB64836	2023-08-08	fish
57	cunner (fTauAds1 alternate hap 2021)[IGV]	Tautogolabrus adspersus	GCA_020745675.1_fTauAds1.alt.cur	SAMN22589422	PRJNA774879	2021-11-05	fish
58	Dalmatian pelican (alternate hap 2023)[IGV]	Pelecanus crispus	GCA_030449815.1_bPelCri1.alt	SAMN35784560	PRJNA984932	2023-07-13	birds
59	Daubenton's bat (alternate hap 2023)[IGV]	Myotis daubentonii	GCA_963242275.1_mMyoDau2.1_alternate_haplotype	SAMEA9921455	PRJEB65247	2023-08-20	mammals
60	denticle herring[IGV]	Denticeps clupeoides	GCA_900700345.2_fDenClu1.1_alternate_haplotype	SAMEA104129917	PRJEB31546	2019-03-27	fish
61	diamondback terrapin (hap2 rMalTer1 2023)[IGV]	Malaclemys terrapin pileata	GCA_027887205.1_rMalTer1.hap2	SAMN31394215	PRJNA895897	2023-01-18	reptiles
62	dorado (hap2 2023)[IGV]	Salminus brasiliensis	GCA_030463535.1_fSalBra1.hap2	SAMN35075251	PRJNA972453	2023-07-14	fish
63	Downy woodpecker (bDryPub1 alternate hap 2020)[IGV]	Dryobates pubescens	GCA_014839825.1_bDryPub1.alt	SAMN12629497	PRJNA561992	2020-09-30	birds
64	dugong (hap2 mDugDug1 2023)[IGV]	Dugong dugon	GCA_030020955.1_mDugDug1.hap2	SAMN33212336	PRJNA932821	2023-05-16	mammals
65	East African grey crowned-crane[IGV]	Balearica regulorum gibbericeps	GCA_011004865.1_bBalReg1.alt	SAMN12615749	PRJNA561891	2020-02-24	birds
66	eastern narrow-mouthed toad (hap2 2023)[IGV]	Gastrophryne carolinensis	GCA_027917415.1_aGasCar1.hap2	SAMN31805274	PRJNA916749	2023-01-18	amphibians
67	electric eel (fEleEle1 alternate hap 2020)[IGV]	Electrophorus electricus	GCA_013347915.1_fEleEle1.alt	SAMN12623625	PRJNA561982	2020-06-12	fish
68	epaulette shark (alternate hap sHemOce1 2021)[IGV]	Hemiscyllium ocellatum	GCA_020745765.1_sHemOce1.mat.decon	SAMN22550098	PRJNA774309	2021-11-05	sharks
69	ermine (alternate hap 2020)[IGV]	Mustela erminea	GCA_009829165.1_mMusErm1.alt	SAMN12611999	PRJNA561930	2020-01-03	mammals
70	Eurasian badger (v3.2 2022)[IGV]	Meles meles	GCA_922984935.2_mMelMel3.2_paternal_haplotype	SAMEA7524400	PRJEB49353	2022-03-23	mammals
71	Eurasian minnow (alternate hap 2023)[IGV]	Phoxinus phoxinus	GCA_949152275.1_fPhoPho1.1_alternate_haplotype	SAMEA11296539	PRJEB59821	2023-04-09	fish
72	Eurasian nightjar (alternate hap 2021)[IGV]	Caprimulgus europaeus	GCA_907165095.1_bCapEur3.1_alternate_haplotype	SAMEA7524394	PRJEB44541	2021-05-15	birds
73	Eurasian red squirrel (alternate hap 2019)[IGV]	Sciurus vulgaris	GCA_902685485.1_mSciVul1.1_alternate_haplotype	SAMEA994733	PRJEB35379	2019-11-26	mammals
74	Eurasian river otter (alternate hap 2019)[IGV]	Lutra lutra	GCA_902653095.1_mLutLut1.1_alternate_haplotype	SAMEA994731	PRJEB35338	2019-12-09	mammals
75	Eurasian water vole (alternate hap 2020)[IGV]	Arvicola amphibius	GCA_903992525.1_mArvAmp1.1_alternate_haplotype	SAMEA994740	PRJEB39549	2020-08-04	mammals
76	European chub (alternate hap 2023)[IGV]	Squalius cephalus	GCA_949319155.1_fSquCep2.1_alternate_haplotype	SAMEA11296547	PRJEB60238	2023-04-09	fish
77	European flounder (alternate hap 2023)[IGV]	Platichthys flesus	GCA_949316195.1_fPlaFle2.1_alternate_haplotype	SAMEA110026475	PRJEB60140	2023-04-08	fish
78	European leaf-toed gecko (hap2 2023)[IGV]	Euleptes europaea	GCA_029931755.1_rEulEur1.hap2	SAMN32622440	PRJNA919167	2023-05-03	reptiles
79	European mink (alternate hap 2023)[IGV]	Mustela lutreola	GCA_030435785.1_mMusLut2.alt	SAMN35784236	PRJNA984927	2023-07-11	mammals
80	European plaice (alternate hap 2022)[IGV]	Pleuronectes platessa	GCA_947347695.1_fPlePla1.1_alternate_haplotype	SAMEA13853390	PRJEB57576	2022-11-27	fish
81	European pond turtle (hap2 rEmyOrb1 2023)[IGV]	Emys orbicularis	GCA_028017845.1_rEmyOrb1.hap2	SAMN31805221	PRJNA919101	2023-01-26	reptiles
82	European robin (alternate hap 2021)[IGV]	Erithacus rubecula	GCA_903797565.2_bEriRub2.2_alternate_haplotype	SAMEA4760689	PRJEB38657	2021-03-21	birds
83	European shag (alternate hap 2023)[IGV]	Phalacrocorax aristotelis	GCA_949628205.1_bGulAri2.1_alternate_haplotype	SAMEA10059652	PRJEB60538	2023-04-09	birds
84	European shrew (alternate hap 2023)[IGV]	Sorex araneus	GCA_027595995.1_mSorAra2.alt	SAMN32477717	PRJNA916524	2023-01-06	mammals
85	European snow vole (alternate hap 2023)[IGV]	Chionomys nivalis	GCA_950005115.1_mChiNiv1.1_alternate_haplotype	SAMEA13217622	PRJEB61597	2023-04-29	mammals
86	European starfish[IGV]	Asterias rubens	GCA_902459445.1_eAstRub1.2_alternate_haplotype	SAMEA994741	PRJEB33973	2019-08-16	echinoderm
87	European turtle dove (v1.2 alternate hap 2021)[IGV]	Streptopelia turtur	GCA_901699165.2_bStrTur1.2_alternate_haplotype	SAMEA994735	PRJEB32725	2021-04-15	birds
88	European woodmouse (alternate hap 2022)[IGV]	Apodemus sylvaticus	GCA_947179525.1_mApoSyl1.1_alternate_haplotype	SAMEA7702024	PRJEB56947	2022-11-01	mammals
89	Eurpoean golden plover (bPluApr1 alternate hap 2021)[IGV]	Pluvialis apricaria	GCA_017639475.1_bPluApr1.alt	SAMN18353970	PRJNA715923	2021-03-30	birds
90	fire-bellied toad (aBomBom1 alternate hap 2023)[IGV]	Bombina bombina	GCA_027579415.1_aBomBom1.alt	SAMN32378350	PRJNA915413	2023-01-06	amphibians
91	flier cichlid[IGV]	Archocentrus centrarchus	GCA_007364235.1_fArcCen1_v1.h	SAMN09948522	PRJNA489130	2019-07-24	fish
92	Florida worm lizard (hap2 rRhiFlo1 2023)[IGV]	Rhineura floridana	GCA_030035675.1_rRhiFlo1.hap2	SAMN34105704	PRJNA953090	2023-05-22	reptiles
93	freshwater garfish (fXenCan1 alternate hap 2020)[IGV]	Xenentodon cancila	GCA_014839645.1_fXenCan1.alt	SAMN12623622	PRJNA561974	2020-09-30	fish
94	Gaboon caecilian[IGV]	Geotrypetes seraphini	GCA_902459495.1_aGeoSer1.1_alternate_haplotype	SAMEA104387963	PRJEB33991	2019-08-18	amphibians
95	garden warbler (bSylBor1 alternate hap 2020)[IGV]	Sylvia borin	GCA_014839765.1_bSylBor1.alt	SAMN12618613	PRJNA561946	2020-09-30	birds
96	gharial (hap2 2023)[IGV]	Gavialis gangeticus	GCA_030020295.1_rGavGan2.hap2	SAMN34116453	PRJNA953442	2023-05-22	reptiles
97	giant manta (sMobBir1 2023)[IGV]	Mobula birostris	GCA_030035685.1_sMobBir1.hap2	SAMN32746370	PRJNA924118	2023-05-22	sharks
98	gilthead seabream[IGV]	Sparus aurata	GCA_900880695.1_fSpaAur1.1_alternate_haplotype	SAMEA104384835	PRJEB31902	2019-07-11	fish
99	golden eagle (v1.4 alternate hap 2021)[IGV]	Aquila chrysaetos chrysaetos	GCA_902153765.2_bAquChr1.4_alternate_haplotype	SAMEA994725	PRJEB33298	2021-03-26	birds
100	Goodes thornscrub tortoise[IGV]	Gopherus evgoodei	GCA_007399395.1_rGopEvg1_v1.alt	SAMN03496275	PRJNA489104	2019-07-24	reptiles
101	Grand Cayman blue iguana (hap2 2023)[IGV]	Cyclura pinguis	GCA_030412085.1_rCycPin1.hap2	SAMN35151422	PRJNA973804	2023-07-05	reptiles
102	gray short-tailed opossum (mMonDom1 alternate hap 2023)[IGV]	Monodelphis domestica	GCA_027917375.1_mMonDom1.alt	SAMN31801966	PRJNA915591	2023-01-17	mammals
103	gray squirrel (alternate hap 2019)[IGV]	Sciurus carolinensis	GCA_902685475.1_mSciCar1.1_alternate_haplotype	SAMEA994726	PRJEB35385	2019-11-26	mammals
104	gray wolf (alternate hap 2021)[IGV]	Canis lupus	GCA_905319845.1_mCanLor1.1_alternate_haplotype	SAMEA7532739	PRJEB43199	2021-03-21	mammals
105	great potoo (bNycGra1 alternate hap 2020)[IGV]	Nyctibius grandis	GCA_013368595.1_bNycGra1.alt	SAMN12622411	PRJNA562021	2020-06-23	birds
106	great white shark (alternate hap 2021)[IGV]	Carcharodon carcharias	GCA_017639455.1_sCarCar2.alt	SAMN12629504	PRJNA562008	2021-03-30	sharks
107	greater argentine (alternate hap 2023)[IGV]	Argentina silus	GCA_951799415.1_fArgSil1.1_alternate_haplotype	SAMEA110137623	PRJEB62528	2023-05-27	fish
108	greater horseshoe bat (MPI-CBG alternate hap 2019)[IGV]	Rhinolophus ferrumequinum	GCA_004115295.1_mRhiFer1_v1.h	SAMN09948510	PRJNA489105	2019-01-28	mammals
109	greater pipefish[IGV]	Syngnathus acus	GCA_901709685.1_fSynAcu1.1_alternate_haplotype	SAMEA104381750	PRJEB32742	2019-06-02	fish
110	greater pipefish (v2 alternate haplotype 2023)[IGV]	Syngnathus acus	GCA_948146095.1_fSynAcu2.1_alternate_haplotype	SAMEA13854528	PRJEB58843	2023-01-18	fish
111	greater sand-eel (alternate hap 2023)[IGV]	Hyperoplus immaculatus	GCA_949358355.1_fHypImm3.1_alternate_haplotype	SAMEA13854416	PRJEB60327	2023-04-09	fish
112	green sea turtle (v2 alternate hap 2021)[IGV]	Chelonia mydas	GCA_015220195.2_rCheMyd1.alt.v2	SAMN12612360	PRJNA561942	2021-07-15	reptiles
113	grey whale (mEscRob2 alternate hap 2023)[IGV]	Eschrichtius robustus	GCA_028021475.1_mEscRob2.alt	SAMN32629250	PRJNA921703	2023-01-26	mammals
114	gudgeon (alternate hap 2023)[IGV]	Gobio gobio	GCA_949357705.1_fGobGob1.1_alternate_haplotype	SAMEA11296538	PRJEB60323	2023-04-09	fish
115	gyrfalcon (bFalRus1 alternate hap 2020)[IGV]	Falco rusticolus	GCA_015220155.1_bFalRus1.alt	SAMN12629496	PRJNA561989	2020-11-02	birds
116	Harpy eagle (bHarHar1 alternate hap 2022)[IGV]	Harpia harpyja	GCA_026419925.1_bHarHar1	SAMN31530492	PRJNA896140	2022-11-25	birds
117	Hawaiian crow (bCorHaw1 alternate hap 2021)[IGV]	Corvus hawaiiensis	GCA_020740675.1_bCorHaw1.alt.cur	SAMN22550278	PRJNA774316	2021-11-03	birds
118	hazel dormouse (alternate hap 2023)[IGV]	Muscardinus avellanarius	GCA_963383665.1_mMusAve1.1_alternate_haplotype	SAMEA110180654	PRJEB65339	2023-08-27	mammals
119	hoatzin (hap2 2023)[IGV]	Opisthocomus hoazin	GCA_030867165.1_bOpiHoa1.hap2	SAMN37055462	PRJNA1007257	2023-08-24	birds
120	honeycomb rockfish (fSebUmb1 alternate hap 2020)[IGV]	Sebastes umbrosus	GCA_015220095.1_fSebUmb1.alt	SAMN12629503	PRJNA562006	2020-11-02	fish
121	hourglass treefrog (paternal 2023)[IGV]	Dendropsophus ebraccatus	GCA_027789765.1_aDenEbr1.pat	SAMN32145295	PRJNA910819	2023-01-13	amphibians
122	house finch (bHaeMex1 alternate hap 2022)[IGV]	Haemorhous mexicanus	GCA_027406555.1_bHaeMex1.alt	SAMN28453576	PRJNA839498	2022-12-27	birds
123	house mouse (alternate hap 2023)[IGV]	Mus musculus	GCA_949316305.1_mMusMuc1.1_alternate_haplotype	SAMEA112251260	PRJEB60145	2023-04-08	mammals
124	human (WGS:JACSEW01 2021 alternate hap)[IGV]	Homo sapiens	GCA_016700455.2_mHomSap3.pat	SAMN12568975	PRJNA562022	2021-01-19	mammals
125	Humboldt's penguin (bSphHub1 alternate hap 2022)[IGV]	Spheniscus humboldti	GCA_027474345.1_bSphHub1.alt	SAMN28408465	PRJNA838344	2022-12-27	birds
126	Indian glassy fish[IGV]	Parambassis ranga	GCA_900651595.1_fParRan2.1_alternate_haplotype	SAMEA4675621	PRJEB30258	2019-02-12	fish
127	Indo-Pacific tarpon (alternate hap 2020)[IGV]	Megalops cyprinoides	GCA_013368575.1_fMegCyp1.alt	SAMN12623619	PRJNA561968	2020-06-23	fish
128	jewelled blenny[IGV]	Salarias fasciatus	GCA_902148835.1_fSalaFa1.1_alternate_haplotype	SAMEA4966329	PRJEB33183	2019-07-03	fish
129	John dory (alternate hap 2023)[IGV]	Zeus faber	GCA_960530785.1_fZeuFab8.1_alternate_haplotype	SAMEA111562156	PRJEB64532	2023-07-26	fish
130	kagu (bRhyJub1 alternate hap 2023)[IGV]	Rhynochetos jubatus	GCA_027595965.1_bRhyJub1.alt	SAMN31802033	PRJNA916496	2023-01-06	birds
131	kakapo (Jane alternate hap 2019)[IGV]	Strigops habroptila	GCA_004011185.1_bStrHab1_v1.h	SAMN09948751	PRJNA489134	2019-01-10	birds
132	killer whale (alternate hap 2022)[IGV]	Orcinus orca	GCA_937001455.1_mOrcOrc1.1_alternate_haplotype	SAMEA8800229	PRJEB52132	2022-05-01	mammals
133	Korean giant-fin mudskipper[IGV]	Periophthalmus magnuspinnatus	GCA_009829135.1_fPerMag1.alt	SAMN12629500	PRJNA561999	2020-01-03	fish
134	lammergeier (bGypBar2 alternate hap 2023)[IGV]	Gypaetus barbatus	GCA_028017155.1_bGypBar2.alt	SAMN32256411	PRJNA912842	2023-01-26	birds
135	lance-tailed manakin[IGV]	Chiroxiphia lanceolata	GCA_009829205.1_bChiLan1.alt	SAMN12620979	PRJNA561944	2020-01-03	birds
136	lanner falcon (bFalBia1 alternate hap 2022)[IGV]	Falco biarmicus	GCA_023634305.1_bFalBia1.alt	SAMN28688289	PRJNA842827	2022-06-01	birds
137	large-eye snaggletooth (alternate hap 2023)[IGV]	Borostomias antarcticus	GCA_949987545.1_fBorAnt1.1_alternate_haplotype	SAMEA8748812	PRJEB61590	2023-04-29	fish
138	largescale foureyes (fAnaAna1 alternate hap 2020)[IGV]	Anableps anableps	GCA_014839705.1_fAnaAna1.alt	SAMN12623628	PRJNA561986	2020-09-30	fish
139	Lataste's viper (alternate hap 2022)[IGV]	Vipera latastei	GCA_024294605.1_rVipLat1.alt	SAMN28408464	PRJNA838199	2022-07-16	reptiles
140	leatherback sea turtle[IGV]	Dermochelys coriacea	GCA_009762595.1_rDerCor1.alt	SAMN12629498	PRJNA561994	2019-12-18	reptiles
141	leatherback sea turtle (v2 alternate hap 2020)[IGV]	Dermochelys coriacea	GCA_009762595.2_rDerCor1.alt.v2	SAMN12629498	PRJNA561994	2020-12-08	reptiles
142	lesser Egyptian jerboa (alternate hap 2021)[IGV]	Jaculus jaculus	GCA_020740715.1_mJacJac1.pat.decon	SAMN20391724	PRJNA773798	2021-11-03	mammals
143	lesser kestrel (alternate hap 2021)[IGV]	Falco naumanni	GCA_017639645.1_bFalNau1.mat	SAMN16870685	PRJNA702665	2021-03-30	birds
144	lesser rhea (bPtePen1 alternate hap 2023)[IGV]	Rhea pennata	GCA_028389885.1_bPtePen1.alt	SAMN32606345	PRJNA918802	2023-02-01	birds
145	lesser salmon catfish (fNeoGra1 alternate hap 2023)[IGV]	Neoarius graeffei	GCA_027579805.1_fNeoGra1.alt	SAMN28453209	PRJNA839495	2023-01-06	fish
146	lesser sand-eel (alternate hap 2023)[IGV]	Ammodytes marinus	GCA_950004245.1_fAmmMar1.1_alternate_haplotype	SAMEA110137622	PRJEB61583	2023-04-29	fish
147	limp eelpout (alternate hap 2023)[IGV]	Melanostigma gelatinosum	GCA_949748265.1_fMelGel1.1_alternate_haplotype	SAMEA12815492	PRJEB60806	2023-04-08	fish
148	live sharksucker[IGV]	Echeneis naucrates	GCA_900963505.1_fEcheNa1.1_alternate_haplotype	SAMEA4966390	PRJEB31993	2019-04-11	fish
149	long-tailed hermit (PSU5 alternate hap 2022)[IGV]	Phaethornis superciliosus	GCA_023637925.1_DD_ASM_B1a	SAMN23532249	PRJNA785156	2022-06-01	birds
150	longspined bullhead (fTauBub2.1 alternate hap 2021)[IGV]	Taurulus bubalis	GCA_910589325.1_fTauBub2.1_alternate_haplotype	SAMEA7522994	PRJEB45316	2021-07-07	fish
151	lumpfish[IGV]	Cyclopterus lumpus	GCA_009769515.1_fCycLum1.alt	SAMN12629502	PRJNA562004	2019-12-19	fish
152	maguari stork (bCicMag1 alternate hap 2021)[IGV]	Ciconia maguari	GCA_017639665.1_bCicMag1.alt	SAMN18353822	PRJNA715732	2021-03-30	birds
153	marbled rockcod (alternate hap 2023)[IGV]	Notothenia rossii	GCA_949606865.1_fNotRos5.1_alternate_haplotype	SAMEA12815441	PRJEB60488	2023-04-09	fish
154	Mauritius kestrel (alternate hap 2023)[IGV]	Falco punctatus	GCA_963210275.1_bFalPun1.1_alternate_haplotype	SAMEA14356472	PRJEB65027	2023-08-19	birds
155	Mauritius parakeet (alternate hap 2023)[IGV]	Psittacula echo	GCA_963243765.1_bPsiEch3.1_alternate_haplotype	SAMEA12361725	PRJEB65272	2023-08-20	birds
156	meadow viper (alternate hap 2022)[IGV]	Vipera ursinii	GCA_947247025.1_rVipUrs1.1_alternate_haplotype	SAMEA12832258	PRJEB57182	2022-10-30	reptiles
157	milkfish[IGV]	Chanos chanos	GCA_902362175.1_fChaCha1.1_alternate_haplotype	SAMEA5159473	PRJEB33881	2019-08-16	fish
158	minke whale (alternate hap 2023)[IGV]	Balaenoptera acutorostrata	GCA_950005055.1_mBalAcu1.1_alternate_haplotype	SAMEA111380540	PRJEB61580	2023-04-29	mammals
159	monito del monte (mDroGli1 alternate hap 2021)[IGV]	Dromiciops gliroides	GCA_019395325.1_mDroGli1.alt	SAMN18857598	PRJNA728142	2021-07-29	mammals
160	mute swan (bCygOlo1 v2 alternate hap 2021)[IGV]	Cygnus olor	GCA_009769485.2_bCygOlo1.alt.v2	SAMN12621369	PRJNA561961	2021-03-30	birds
161	Nelson's sparrow (bAmmNel1 alternate hap 2023)[IGV]	Ammospiza nelsoni	GCA_027579665.1_bAmmNel1.alt	SAMN28421656	PRJNA839457	2023-01-06	birds
162	New Caledonian crow[IGV]	Corvus moneduloides	GCA_009651025.1_bCorMon1.alt	SAMN12368441	PRJNA560982	2019-11-12	birds
163	New Zealand spotty[IGV]	Notolabrus celidotus	GCA_009762545.1_fNotCel1.alt	SAMN12623201	PRJNA561957	2019-12-17	fish
164	ninespine stickleback (alternate hap 2023)[IGV]	Pungitius pungitius	GCA_949316245.1_fPunPun2.1_alternate_haplotype	SAMEA11296545	PRJEB60135	2023-04-08	fish
165	North American porcupine (mEreDor1 alternate hap 2023)[IGV]	Erethizon dorsatum	GCA_028500835.1_mEreDor1.alt	SAMN32359106	PRJNA915122	2023-02-03	mammals
166	North Atlantic right whale (mEubGla1 hap2 2023)[IGV]	Eubalaena glacialis	GCA_028564815.1_mEubGla1.hap2	SAMN32746534	PRJNA924128	2023-02-09	mammals
167	northern bat (alternate hap 2023)[IGV]	Eptesicus nilssonii	GCA_951640545.1_mEptNil1.1_alternate_haplotype	SAMEA14098186	PRJEB62201	2023-05-18	mammals
168	northern bottlenose whale (alternate hap 2023)[IGV]	Hyperoodon ampullatus	GCA_949752845.1_mHypAmp2.1_alternate_haplotype	SAMEA10839125	PRJEB60894	2023-04-09	mammals
169	northern gannet (hap2 2023)[IGV]	Morus bassanus	GCA_031468815.1_bMorBas2.hap2	SAMN37096299	PRJNA1009681	2023-09-15	birds
170	northern goshawk (bAccGen1 v1 alternate hap 2022)[IGV]	Accipiter gentilis	GCA_929447715.1_bAccGen1.1_alternate_haplotype	SAMEA8235650	PRJEB50703	2022-02-13	birds
171	northern pike[IGV]	Esox lucius	GCA_011004835.1_fEsoLuc1.alt	SAMN12623624	PRJNA561978	2020-02-24	fish
172	Norway rat BN7 haplotype[IGV]	Rattus norvegicus	GCA_015244455.1_mRatBN7.1_alternate_haplotype	SAMN16261960	PRJNA663241	2020-11-04	mammals
173	olive python (hap2 2023)[IGV]	Liasis olivaceus	GCA_030867085.1_rLiaOli1.hap2	SAMN32739907	PRJNA923813	2023-08-24	reptiles
174	orange-tipped seq squirt (alternate hap 2023)[IGV]	Corella eumyota	GCA_963082865.1_kaCorEumy4.1_alternate_haplotype	SAMEA7536466	PRJEB64847	2023-08-08	otherChordates
175	orbiculate cardinalfish[IGV]	Sphaeramia orbicularis	GCA_902148825.1_fSphaOr1.1_alternate_haplotype	SAMEA4966328	PRJEB33176	2019-07-03	fish
176	painted frog (alternate hap 2022)[IGV]	Discoglossus pictus	GCA_027410455.1_aDisPic1.alt	SAMN32227109	PRJNA912128	2022-12-27	amphibians
177	pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020)[IGV]	Phyllostomus discolor	GCA_004115245.2_mPhyDis1.alti.v3	SAMN09948786	PRJNA489142	2020-05-11	mammals
178	peladilla (fAplTae1 alternate hap 2021)[IGV]	Aplochiton taeniatus	GCA_017639685.1_fAplTae1.alt	SAMN12623621	PRJNA561972	2021-03-30	fish
179	peregrine falcon (bFalPer1 alternate hap 2022)[IGV]	Falco peregrinus	GCA_023634185.1_bFalPer1.alt	SAMN28688290	PRJNA842833	2022-06-01	birds
180	Philippine flying lemur (mCynVol1 alternate hap 2022)[IGV]	Cynocephalus volans	GCA_027409165.1_mCynVol1.alt	SAMN32206947	PRJNA911845	2022-12-27	mammals
181	pinecone soldierfish[IGV]	Myripristis murdjan	GCA_902148815.1_fMyrMur1.1_alternate_haplotype	SAMEA4872133	PRJEB33187	2019-07-03	fish
182	pink pigeon (alternate hap 2023)[IGV]	Nesoenas mayeri	GCA_963082445.1_bNesMay2.1_alternate_haplotype	SAMEA12922160	PRJEB64782	2023-08-08	birds
183	plains spadefoot toad (alternate hap 2022)[IGV]	Spea bombifrons	GCA_027382365.2_aSpeBom1.2.alt	SAMN28408467	PRJNA838346	2022-12-27	amphibians
184	platypus (alternate hap Pmale09 2020)[IGV]	Ornithorhynchus anatinus	GCA_004115175.2_mOrnAna1.alt.v3	SAMN08537700	PRJNA489115	2020-04-06	mammals
185	plumbeous ibis (bTheCae1 alternate hap 2021)[IGV]	Theristicus caerulescens	GCA_020745805.1_bTheCae1.alt.cur	SAMN22550094	PRJNA774321	2021-11-05	birds
186	pollack (alternate hap 2023)[IGV]	Pollachius pollachius	GCA_949987605.1_fPolPol2.1_alternate_haplotype	SAMEA111562038	PRJEB61574	2023-04-29	fish
187	prehistoric monster fish[IGV]	Thalassophryne amazonica	GCA_902500245.1_fThaAma1.1_alternate_haplotype	SAMEA104129913	PRJEB34605	2019-09-30	fish
188	razorbill[IGV]	Alca torda	GCA_008658355.1_bAlcTor1_alternate	SAMN12292087	PRJNA554521	2019-09-23	birds
189	red deer (alternate hap 2021)[IGV]	Cervus elaphus	GCA_910593805.1_mCerEla1.1_alternate_haplotype	SAMEA7523520	PRJEB45837	2021-07-07	mammals
190	red-bellied piranha (fPygNat1 alternate hap 2020)[IGV]	Pygocentrus nattereri	GCA_015220065.1_fPygNat1.alt	SAMN12623623	PRJNA561976	2020-11-02	fish
191	red-crested turaco[IGV]	Tauraco erythrolophus	GCA_009764505.1_bTauEry1.alt	SAMN12621036	PRJNA561948	2019-12-18	birds
192	Red-fronted tinkerbird (bPogPus1 alternate hap 2020)[IGV]	Pogoniulus pusillus	GCA_015220175.1_bPogPus1.alt	SAMN15098508	PRJNA637954	2020-11-02	birds
193	red-legged seriema[IGV]	Cariama cristata	GCA_009819485.1_bCarCri1.alt	SAMN12614807	PRJNA561893	2019-12-23	birds
194	red-throated loon (hap2 2023 genbank)[IGV]	Gavia stellata	GCA_030936135.1_bGavSte3.hap2	SAMN37096312	PRJNA1008847	2023-08-30	birds
195	reedfish[IGV]	Erpetoichthys calabaricus	GCA_900700845.2_fErpCal1.1_alternate_haplotype	SAMEA104026374	PRJEB31582	2019-03-27	fish
196	reedfish (alternate hap 2021)[IGV]	Erpetoichthys calabaricus	GCA_900700845.3_fErpCal1.3_alternate_haplotype	SAMEA104026374	PRJEB31582	2021-07-07	fish
197	Rice's whale (hap2 2023 genbank)[IGV]	Balaenoptera ricei	GCA_028023285.1_mBalRic1.hap2	SAMN32629060	PRJNA921698	2023-01-30	mammals
198	rifleman (bAcaChl1 alternate hap 2021)[IGV]	Acanthisitta chloris	GCA_016880875.1_bAcaChl1.alt	SAMN16442762	PRJNA561955	2021-02-10	birds
199	ring-tailed lemur (mLemCat1 alternate hap 2021)[IGV]	Lemur catta	GCA_020740595.1_mLemCat1.alt	SAMN12621102	PRJNA561950	2021-11-03	mammals
200	roach minnow (alternate hap 2023)[IGV]	Rutilus rutilus	GCA_951802655.1_fRutRut2.1_alternate_haplotype	SAMEA11296543	PRJEB62671	2023-05-29	fish
201	rock gunnel (alternate hap 2021)[IGV]	Pholis gunnellus	GCA_910591705.2_fPhoGun1.2_alternate_haplotype	SAMEA7522838	PRJEB45448	2021-11-18	fish
202	rock ptarmigan (bLagMut1 alternate hap 2022)[IGV]	Lagopus muta	GCA_023344045.1_bLagMut1_alternate	SAMN25144835	PRJNA836585	2022-05-12	birds
203	Rosablanca catfish (hap2 2023)[IGV]	Trichomycterus rosablanca	GCA_030015355.1_fTriRos1.hap2	SAMN32755940	PRJNA924297	2023-05-15	fish
204	royal ground snake (hap2 2023)[IGV]	Erythrolamprus reginae	GCA_031021085.1_rEryReg1.hap2	SAMN32631248	PRJNA921729	2023-08-30	reptiles
205	royal ground snake (hap3 2023)[IGV]	Erythrolamprus reginae	GCA_031001685.1_rEryReg1.hap3	SAMN32631248	PRJNA996865	2023-08-30	reptiles
206	saddleback dolphin (alternate hap 2023)[IGV]	Delphinus delphis	GCA_949987525.1_mDelDel1.1_alternate_haplotype	SAMEA111380534	PRJEB61572	2023-04-29	mammals
207	Saker falcon (bFalChe1 alternate hap 2022)[IGV]	Falco cherrug	GCA_023634115.1_bFalChe1.alt	SAMN28688204	PRJNA842830	2022-06-01	birds
208	saltmarsh sparrow (bAmmCau1 alternate hap 2023)[IGV]	Ammospiza caudacuta	GCA_027887135.1_bAmmCau1.alt	SAMN28421630	PRJNA839451	2023-01-17	birds
209	sand lizard[IGV]	Lacerta agilis	GCA_009819545.1_rLacAgi1.alt	SAMN12629509	PRJNA562019	2019-12-23	reptiles
210	Sardinian treefrog (hap2 2023)[IGV]	Hyla sarda	GCA_029493135.1_aHylSar1.hap2	SAMN32629340	PRJNA921708	2023-03-30	amphibians
211	sea lamprey[IGV]	Petromyzon marinus	GCA_010993595.1_kPetMar1.alt	SAMN12629506	PRJNA562012	2020-02-24	otherChordates
212	shanny (alternate hap 2023)[IGV]	Lipophrys pholis	GCA_963383635.1_fLipPho2.1_alternate_haplotype	SAMEA7522844	PRJEB65341	2023-08-26	fish
213	Siamese fighting fish[IGV]	Betta splendens	GCA_900651605.1_fBetSpl5.1_alternate_haplotype	SAMEA104381735	PRJEB30366	2019-02-07	fish
214	Siamese fighting fish (v5.4 alternate hap 2023)[IGV]	Betta splendens	GCA_900651605.2_fBetSpl5.4_alternate_haplotype	SAMEA104381735	PRJEB30366	2023-04-08	fish
215	slow loris (mNycCou1 alternate hap 2022)[IGV]	Nycticebus coucang	GCA_027406535.1_mNycCou1.alt	SAMN28408555	PRJNA838347	2022-12-27	mammals
216	smaller spotted catshark (alternate hap 2021)[IGV]	Scyliorhinus canicula	GCA_902713625.2_sScyCan1.2_alternate_haplotype	SAMEA994730	PRJEB35944	2021-01-28	sharks
217	smalltooth sawfish[IGV]	Pristis pectinata	GCA_009764485.1_sPriPec2.alt	SAMN12629505	PRJNA562010	2019-12-18	sharks
218	soprano pipistrelle (alternate hap 2023)[IGV]	Pipistrellus pygmaeus	GCA_949987765.1_mPipPyg2.1_alternate_haplotype	SAMEA9921456	PRJEB61582	2023-04-29	mammals
219	South Island takahe (alternate hap 2021)[IGV]	Porphyrio hochstetteri	GCA_020801775.1_bPorHoc1.pat.decon	SAMN22550412	PRJNA774332	2021-11-08	birds
220	southern bluefin tuna (alternate hap 2021)[IGV]	Thunnus maccoyii	GCA_910596085.1_fThuMac1.1_alternate_haplotype	SAMEA8654747	PRJEB46020	2021-07-07	fish
221	southern tamandua (mTamTet1 alternate hap 2022)[IGV]	Tamandua tetradactyla	GCA_023853755.1_mTamTet1.alt	SAMN12612337	PRJNA561940	2022-06-22	mammals
222	southern two-toed sloth (mChoDid1 alternate hap 2020)[IGV]	Choloepus didactylus	GCA_015220265.1_mChoDid1.alt	SAMN12612024	PRJNA561938	2020-11-02	mammals
223	speckled mousebird (hap2 2023)[IGV]	Colius striatus	GCA_028858625.1_bColStr4.hap2	SAMN33339572	PRJNA936150	2023-02-24	birds
224	stone loach (alternate hap 2022)[IGV]	Barbatula barbatula	GCA_947034905.1_fBarBar1.1_alternate_haplotype	SAMEA11296540	PRJEB56421	2022-10-08	fish
225	striped catfish (fPanHyp1 alternate hap 2022)[IGV]	Pangasianodon hypophthalmus	GCA_027382375.1_fPanHyp1.alt	SAMN32348883	PRJNA914798	2022-12-27	fish
226	striped dolphin (alternate hap 2023)[IGV]	Stenella coeruleoalba	GCA_951394445.1_mSteCoe1.1_alternate_haplotype	SAMEA111380539	PRJEB62075	2023-05-13	mammals
227	Suruca trogon (bTroSur1 alternate hap 2021)[IGV]	Trogon surrucura	GCA_020746095.1_bTroSur1.alt.cur	SAMN22550082	PRJNA774296	2021-11-05	birds
228	Swainson's thrush (bCatUst1 v2 alternate hap 2020)[IGV]	Catharus ustulatus	GCA_009819505.2_bCatUst1.alt.v2	SAMN12618602	PRJNA561934	2020-11-05	birds
229	swamp sparrow (bMelGeo1 alternate hap 2023)[IGV]	Melospiza georgiana	GCA_028019105.1_bMelGeo1.alt	SAMN22787412	PRJNA915610	2023-01-26	birds
230	tammar wallaby (mMacEug1 alternate hap 2023)[IGV]	Notamacropus eugenii	GCA_028389975.1_mMacEug1.alt	SAMN28408687	PRJNA838351	2023-02-01	mammals
231	tawny frogmouth (bPodStr1 alternate hap 2023)[IGV]	Podargus strigoides	GCA_028020675.1_bPodStr1.alt	SAMN31801959	PRJNA912328	2023-01-26	birds
232	thorny skate[IGV]	Amblyraja radiata	GCA_010909745.1_sAmbRad1.alt	SAMN09948523	PRJNA591368	2020-02-14	sharks
233	tiger shark (hap2 2023)[IGV]	Stegostoma tigrinum	GCA_030684295.1_sSteTig4.hap2	SAMN35823397	PRJNA986594	2023-08-07	sharks
234	tiny Cayenne caecilian[IGV]	Microcaecilia unicolor	GCA_901765105.1_aMicUni1.1_alternate_haplotype	SAMEA104387962	PRJEB32738	2019-07-08	amphibians
235	torafugu[IGV]	Takifugu rubripes	GCA_901000745.3_fTakRub1.2_alternate_haplotype	SAMEA104384834	PRJEB31989	2019-06-05	fish
236	trahira (hap2 2023)[IGV]	Hoplias malabaricus	GCA_029633875.1_fHopMal1.hap2	SAMN32740525	PRJNA923843	2023-04-13	fish
237	tufted duck[IGV]	Aythya fuligula	GCA_009819845.1_bAytFul2.alt	SAMN12621346	PRJNA561953	2019-12-23	birds
238	two-lined caecilian[IGV]	Rhinatrema bivittatum	GCA_901001175.1_aRhiBiv1.1_alternate_haplotype	SAMEA104387956	PRJEB32112	2019-06-02	amphibians
239	vaquita (alternate hap mPhoSin1 2019)[IGV]	Phocoena sinus	GCA_008692045.1_mPhoSin1.alt	SAMN12325353	PRJNA557832	2019-09-24	mammals
240	warty frogfish (fAntMac1 alternate hap 2020)[IGV]	Antennarius maculatus	GCA_013347815.1_fAntMac1.alt	SAMN12623626	PRJNA561980	2020-06-12	fish
241	western capercaillie (alternate hap 2023)[IGV]	Tetrao urogallus	GCA_951394355.1_bTetUro1.1_alternate_haplotype	SAMEA9654429	PRJEB62069	2023-05-13	birds
242	western European hedgehog (alternate hap 2023)[IGV]	Erinaceus europaeus	GCA_950295305.1_mEriEur2.1_alternate_haplotype	SAMEA13207416	PRJEB61757	2023-05-01	mammals
243	Western terrestrial garter snake[IGV]	Thamnophis elegans	GCA_009769695.1_rThaEle1.alt	SAMN12629499	PRJNA561997	2019-12-19	reptiles
244	whiskered treeswift (bHemCom1 alternate hap 2021)[IGV]	Hemiprocne comata	GCA_020745695.1_bHemCom1.alt.cur	SAMN22588383	PRJNA774830	2021-11-05	birds
245	white-beaked dolphin (alternate hap 2023)[IGV]	Lagenorhynchus albirostris	GCA_949774935.1_mLagAlb1.1_alternate_haplotype	SAMEA111380537	PRJEB60993	2023-04-09	mammals
246	white-tailed eagle (bHalAlb1.1 alternate hap 2022)[IGV]	Haliaeetus albicilla	GCA_947461935.1_bHalAlb1.1_alternate_haplotype	SAMEA12857288	PRJEB57864	2022-12-02	birds
247	white-toothed pygmy shrew (mSunEtr1 alternate hap 2022)[IGV]	Suncus etruscus	GCA_024140225.1_mSunEtr1.alt.cur	SAMN28420931	PRJNA839355	2022-07-05	mammals
248	white-tufted-ear marmoset (v1.2 paternal 2021)[IGV]	Callithrix jacchus	GCA_011100535.2_mCalJac1.2.pat	SAMN12368443	PRJNA558087	2021-04-28	mammals
249	whooping crane (paternal hap 2023)[IGV]	Grus americana	GCA_028858595.1_bGruAme1.pat	SAMN32775697	PRJNA924954	2023-02-24	birds
250	yellow-spotted hyrax (mHetBru1 alternate hap 2023)[IGV]	Heterohyrax brucei	GCA_028571665.1_mHetBru1.alt	SAMN33092455	PRJNA931598	2023-02-08	mammals
251	yellow-throated sandgrouse[IGV]	Pterocles gutturalis	GCA_009769505.1_bPteGut1.alt	SAMN12623217	PRJNA561959	2019-12-19	birds
252	yellowfin seabream (v.2019 alternate hap 2020)[IGV]	Acanthopagrus latus	GCA_904848175.1_fAcaLat1.1_alternate_haplotype	SAMN16236878	PRJEB40701	2020-10-12	fish
253	yellowfin tuna (alternate hap 2021)[IGV]	Thunnus albacares	GCA_914744365.1_fThuAlb1.1_alternate_haplotype	SAMEA8654749	PRJEB47266	2021-09-15	fish
254	zebra finch (alternate hap Blue55 v1 2020)[IGV]	Taeniopygia guttata	GCA_009859025.1_bTaeGut2.p.v1.alt	SAMN09946140	PRJNA489187	2020-01-13	birds
255	zebra finch (Black17 v1.4 alternate hap 2021)[IGV]	Taeniopygia guttata	GCA_003957525.2_bTaeGut1.4.alt	SAMN02981239	PRJNA489099	2021-04-28	birds
256	zebrafish (fDanRer4 alternate hap 2022)[IGV]	Danio rerio	GCA_944039255.1_fDanRer4.1_alternate_haplotype	SAMEA14088276	PRJEB53408	2022-06-17	fish
257	zig-zag eel[IGV]	Mastacembelus armatus	GCA_900700395.1_fMasArm1.2_alternate_haplotype	SAMEA104026378	PRJEB31553	2019-04-01	fish

Alternate sets of VGP assemblies					NCBI Refseq
Index pages:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Assembly statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies
Track statistics:	primary assembly	alternate/haplotype	trio mat/pat	legacy/superseded	other NCBI Refseq assemblies