VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 African grass rat Arvicanthis niloticus GCA_011750645.1_mArvNil1.mat 1,610 2,486,141,644 1,526 27,535,453 37.17
2 African grass rat Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X 1,596 2,496,777,707 1,624 20,289,527 37.17
3 African grass rat Arvicanthis niloticus GCA_011762545.1_mArvNil1.pat 1,740 2,517,706,780 1,563 57,877,291 36.53
4 budgerigar Melopsittacus undulatus GCA_012275265.1_bMelUnd1.mat 930 1,169,393,027 388 67,787,495 20.82
5 budgerigar Melopsittacus undulatus GCA_012275275.1_bMelUnd1.pat 330 1,124,753,724 737 11,458,836 20.35
6 budgerigar Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z 865 1,171,635,651 284 3,236,129 22.13
7 common bottlenose dolphin Tursiops truncatus GCA_011762515.1_mTurTru1.pat 1,166 2,378,995,196 868 45,794,633 45.09
8 common bottlenose dolphin Tursiops truncatus GCA_011762535.1_mTurTru1.mat 985 2,385,753,970 649 6,418,241 46.07
9 common bottlenose dolphin Tursiops truncatus GCF_011762595.1_mTurTru1.mat.Y 362 2,378,522,213 674 6,222,516 45.74
10 sterlet Acipenser ruthenus GCA_902713425.1_fAciRut3.1_maternal_haplotype 245 1,638,742,712 402 87,383 39.24
11 sterlet Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype 224 1,663,879,616 422 83,585 39.19
12 white-tufted-ear marmoset Callithrix jacchus GCA_011078405.1_mCalJac1.mat 216 2,811,151,840 1,068 11,863,565 49.86
13 white-tufted-ear marmoset Callithrix jacchus GCA_011100535.1_mCalJac1.pat 336 2,682,316,413 788 11,206,679 49.24
14 white-tufted-ear marmoset Callithrix jacchus GCA_011100555.1_mCalJac1.pat.X 353 2,829,727,687 959 13,425,093 49.77
15 zebra finch Taeniopygia guttata GCA_008822115.3_bTaeGut2.mat.v3 206 995,952,786 583 15,480,445 20.34
16 zebra finch Taeniopygia guttata GCA_008822125.1_bTaeGut2pat 202 1,047,569,904 828 20,734,162 20.05
17 zebra finch Taeniopygia guttata GCF_008822105.2_bTaeGut2.pat.W.v2 205 1,068,988,106 857 21,568,737 20.18
TOTALS:total assembly count 17 11,571 32,848,008,976 14,220 341,069,770  
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent

Alternate sets of VGP assemblies
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded