VGP - Vertebrate Genomes Project assembly hubs, track statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of legacy/superseded assemblies)

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 Anna's hummingbird
GCF_003957555.1
31,091
(4.24 %)
12,248
(1.95 %)
20,821
(2.30 %)
n/a 41.49
(98.48 %)
429
(1.52 %)
159
(100.00 %)
547,346
(7.89 %)
262,055
(1.51 %)
6,092,276
(20.84 %)
17,130
(1.48 %)
2 blunt-snouted clingfish
GCA_900634775.1
n/a 14,502
(1.97 %)
28,865
(5.58 %)
n/a 38.27
(98.47 %)
1,160
(1.53 %)
441
(100.00 %)
731,727
(4.21 %)
471,620
(4.92 %)
5,974,002
(42.88 %)
29,050
(1.48 %)
3 channel bull blenny
GCA_900634415.1
n/a 14,475
(3.02 %)
24,012
(6.59 %)
n/a 40.96
(99.58 %)
445
(0.42 %)
322
(100.00 %)
420,694
(5.49 %)
320,518
(6.91 %)
3,394,846
(28.67 %)
20,453
(1.39 %)
4 climbing perch
GCA_900324465.2
n/a 15,241
(3.53 %)
22,713
(7.45 %)
n/a 40.40
(99.35 %)
266
(0.65 %)
50
(100.00 %)
324,476
(2.66 %)
130,248
(1.89 %)
3,324,960
(21.31 %)
10,500
(0.87 %)
5 common bottlenose dolphin
GCA_011762595.1
n/a 18,784
(1.76 %)
21,417
(1.48 %)
n/a 41.44
(99.74 %)
674
(0.26 %)
362
(100.00 %)
4,067,518
(46.14 %)
628,982
(2.12 %)
12,490,896
(35.29 %)
65,551
(1.90 %)
6 flier cichlid
GCF_007364275.1
43,842
(8.12 %)
15,440
(2.15 %)
51,452
(5.98 %)
n/a 41.23
(98.19 %)
744
(1.81 %)
188
(100.00 %)
1,049,840
(17.13 %)
287,035
(2.21 %)
5,305,890
(30.67 %)
24,130
(1.26 %)
7 Gabon caecilian
GCA_902459505.1
n/a 14,264
(0.51 %)
30,710
(1.49 %)
n/a 43.24
(99.85 %)
433
(0.15 %)
163
(100.00 %)
1,311,110
(1.64 %)
1,364,596
(3.83 %)
19,589,738
(52.85 %)
270,923
(4.52 %)
8 greater horseshoe bat
GCF_004115265.1
53,352
(3.13 %)
18,648
(1.96 %)
20,392
(1.68 %)
n/a 40.54
(99.64 %)
158
(0.36 %)
134
(100.00 %)
3,232,363
(34.57 %)
564,789
(1.35 %)
12,217,020
(29.39 %)
32,445
(1.06 %)
9 Kakapo
GCA_004027225.2
n/a 13,101
(1.92 %)
17,782
(2.51 %)
n/a 41.97
(99.08 %)
373
(0.92 %)
90
(100.00 %)
507,069
(7.85 %)
208,180
(1.08 %)
6,258,178
(20.50 %)
22,279
(1.79 %)
10 thorny skate
GCA_010909765.1
n/a 11,443
(0.60 %)
26,743
(1.75 %)
n/a 44.30
(92.54 %)
3,753
(7.46 %)
958
(100.00 %)
866,595
(2.58 %)
1,176,350
(3.79 %)
9,964,083
(52.25 %)
242,676
(4.73 %)
11 zebra finch
GCF_003957565.1
51,472
(7.16 %)
13,210
(2.01 %)
25,575
(2.63 %)
38,869
(7.10 %)
42.04
(99.78 %)
312
(0.22 %)
135
(100.00 %)
545,004
(8.45 %)
550,118
(4.01 %)
6,519,872
(21.47 %)
30,053
(2.56 %)
TOTALS:total assembly count 11

Alternate sets of VGP assemblies
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded