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VGP - Vertebrate Genomes Project assembly hubs, track statistics
This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)
See also: hub access, assembly statistics
Data resource links
NOTE: Click on the column headers to sort the table by that columnThe link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | African grass rat (maternal) GCA_011750645.1 |
n/a | 20,905 (2.00 %) |
19,775 (1.45 %) |
n/a | 41.37 (98.89 %) |
1,526 (1.11 %) |
1,610 (100.00 %) |
4,928,844 (37.45 %) |
1,652,295 (5.20 %) |
13,507,965 (32.27 %) |
17,711 (0.50 %) |
| 2 | African grass rat (paternal X) GCF_011762505.1 |
45,963 (2.46 %) |
20,878 (1.99 %) |
19,613 (1.43 %) |
n/a | 41.39 (99.19 %) |
1,624 (0.81 %) |
1,595 (100.00 %) |
4,939,557 (37.33 %) |
1,674,970 (5.40 %) |
13,613,429 (32.71 %) |
17,767 (0.51 %) |
| 3 | African grass rat (paternal) GCA_011762545.1 |
n/a | 20,760 (1.99 %) |
19,765 (1.45 %) |
n/a | 41.42 (97.70 %) |
1,563 (2.30 %) |
1,740 (100.00 %) |
4,904,240 (37.25 %) |
1,672,608 (5.37 %) |
13,465,246 (32.19 %) |
17,677 (0.50 %) |
| 4 | budgerigar (maternal) GCA_012275265.1 |
n/a | 12,645 (1.89 %) |
18,505 (2.70 %) |
n/a | 41.89 (94.20 %) |
388 (5.80 %) |
930 (100.00 %) |
504,674 (9.95 %) |
268,616 (3.12 %) |
5,481,198 (20.78 %) |
20,278 (1.55 %) |
| 5 | budgerigar (paternal) GCA_012275275.1 |
n/a | 13,131 (1.94 %) |
19,040 (2.75 %) |
n/a | 41.84 (98.98 %) |
737 (1.02 %) |
330 (100.00 %) |
505,475 (9.66 %) |
231,633 (2.15 %) |
5,778,405 (20.30 %) |
20,205 (1.61 %) |
| 6 | budgerigar (paternal Z) GCF_012275295.1 |
32,026 (4.32 %) |
13,239 (1.87 %) |
23,063 (2.25 %) |
n/a | 41.80 (99.72 %) |
284 (0.28 %) |
864 (100.00 %) |
538,374 (10.19 %) |
279,504 (3.12 %) |
5,874,531 (22.08 %) |
21,155 (1.61 %) |
| 7 | common bottlenose dolphin (paternal) GCA_011762515.1 |
n/a | 18,561 (1.76 %) |
21,110 (1.48 %) |
n/a | 41.42 (98.08 %) |
868 (1.92 %) |
1,166 (100.00 %) |
3,997,798 (45.93 %) |
609,838 (1.85 %) |
12,400,272 (34.53 %) |
64,630 (1.84 %) |
| 8 | common bottlenose dolphin (maternal) GCA_011762535.1 |
n/a | 18,853 (1.76 %) |
21,496 (1.48 %) |
n/a | 41.43 (99.73 %) |
649 (0.27 %) |
985 (100.00 %) |
4,073,890 (46.15 %) |
630,039 (2.15 %) |
12,628,219 (35.41 %) |
65,379 (1.89 %) |
| 9 | common bottlenose dolphin (maternal Y) GCF_011762595.1 |
67,220 (3.31 %) |
18,774 (1.76 %) |
20,983 (1.46 %) |
n/a | 41.44 (99.74 %) |
674 (0.26 %) |
362 (100.00 %) |
3,974,528 (45.82 %) |
628,982 (2.12 %) |
12,490,891 (35.29 %) |
65,551 (1.90 %) |
| 10 | sterlet (maternal) GCA_902713425.1 |
n/a | 22,326 (1.80 %) |
33,919 (4.12 %) |
n/a | 39.56 (99.99 %) |
402 (0.01 %) |
245 (100.00 %) |
1,126,735 (3.36 %) |
889,853 (6.73 %) |
8,766,715 (39.22 %) |
51,351 (1.78 %) |
| 11 | sterlet (paternal) GCA_902713435.1 |
n/a | 22,726 (1.81 %) |
34,878 (4.20 %) |
n/a | 39.60 (100.00 %) |
422 (0.01 %) |
224 (100.00 %) |
1,145,500 (3.39 %) |
912,936 (6.84 %) |
8,839,174 (39.17 %) |
52,552 (1.72 %) |
| 12 | white-tufted-ear marmoset (maternal) GCA_011078405.1 |
n/a | 21,719 (1.91 %) |
22,113 (1.37 %) |
n/a | 40.97 (99.58 %) |
1,068 (0.42 %) |
216 (100.00 %) |
5,099,930 (50.01 %) |
797,450 (2.45 %) |
15,059,591 (37.67 %) |
36,133 (0.92 %) |
| 13 | white-tufted-ear marmoset (paternal) GCA_011100535.1 |
n/a | 20,978 (1.93 %) |
21,563 (1.39 %) |
n/a | 41.04 (99.58 %) |
788 (0.42 %) |
336 (100.00 %) |
4,869,004 (49.39 %) |
746,577 (2.68 %) |
14,347,286 (37.59 %) |
35,222 (0.94 %) |
| 14 | white-tufted-ear marmoset (paternal X) GCA_011100555.1 |
n/a | 21,747 (1.90 %) |
22,403 (1.37 %) |
n/a | 40.95 (99.53 %) |
959 (0.47 %) |
353 (100.00 %) |
5,123,968 (49.94 %) |
785,181 (2.64 %) |
15,163,086 (37.93 %) |
36,768 (0.93 %) |
| 15 | zebra finch (maternal) GCA_008822115.3 |
n/a | 11,942 (1.99 %) |
16,368 (2.73 %) |
n/a | 42.06 (98.45 %) |
583 (1.55 %) |
206 (100.00 %) |
494,107 (9.54 %) |
347,933 (2.80 %) |
5,875,448 (20.29 %) |
27,385 (2.54 %) |
| 16 | zebra finch (paternal) GCA_008822125.1 |
n/a | 12,374 (1.97 %) |
16,560 (2.63 %) |
n/a | 41.74 (98.02 %) |
828 (1.98 %) |
202 (100.00 %) |
511,321 (8.38 %) |
351,624 (2.53 %) |
6,328,918 (19.99 %) |
25,871 (2.29 %) |
| 17 | zebra finch (paternal W) GCF_008822105.2 |
50,407 (7.20 %) |
12,465 (1.95 %) |
17,085 (2.63 %) |
n/a | 41.81 (97.98 %) |
857 (2.02 %) |
205 (100.00 %) |
540,255 (9.53 %) |
357,586 (2.56 %) |
6,359,599 (20.12 %) |
27,755 (2.36 %) |
| TOTALS: | total assembly count 17 | |||||||||||
| Alternate sets of VGP assemblies | NCBI Refseq | ||||
|---|---|---|---|---|---|
| Index pages: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Assembly statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Track statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |