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VGP - Vertebrate Genomes Project assembly hubs, track statistics
This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)
See also: hub access, assembly statistics
Data resource links
NOTE: Click on the column headers to sort the table by that columnThe link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | African grass rat (maternal 2020) GCA_011750645.1 |
n/a | 20,916 (2.01 %) |
19,513 (1.43 %) |
n/a | 41.37 (98.89 %) |
1,526 (1.11 %) |
1,610 (100.00 %) |
4,928,847 (37.45 %) |
1,652,295 (5.20 %) |
13,507,965 (32.27 %) |
17,712 (0.51 %) |
| 2 | African grass rat (paternal 2020) GCA_011762545.1 |
n/a | 20,796 (2.00 %) |
19,611 (1.43 %) |
n/a | 41.42 (97.70 %) |
1,563 (2.30 %) |
1,740 (100.00 %) |
4,904,243 (37.25 %) |
1,672,608 (5.37 %) |
13,465,246 (32.19 %) |
17,677 (0.50 %) |
| 3 | African grass rat (paternal X 2020 refseq) GCF_011762505.1 |
45,963 (2.46 %) |
20,878 (1.99 %) |
19,613 (1.43 %) |
37,929 (2.32 %) |
41.39 (99.19 %) |
1,624 (0.81 %) |
1,595 (100.00 %) |
4,939,557 (37.33 %) |
1,674,970 (5.40 %) |
13,613,429 (32.71 %) |
17,767 (0.51 %) |
| 4 | budgerigar (maternal 2020) GCA_012275265.1 |
n/a | 12,659 (1.89 %) |
22,063 (2.28 %) |
n/a | 41.89 (94.20 %) |
388 (5.80 %) |
930 (100.00 %) |
504,677 (9.95 %) |
268,616 (3.12 %) |
5,481,198 (20.78 %) |
20,278 (1.55 %) |
| 5 | budgerigar (maternal Z 2020 refseq) GCF_012275295.1 |
32,026 (4.32 %) |
13,239 (1.87 %) |
23,063 (2.25 %) |
26,324 (3.11 %) |
41.80 (99.72 %) |
284 (0.28 %) |
864 (100.00 %) |
538,374 (10.19 %) |
279,504 (3.12 %) |
5,874,531 (22.08 %) |
21,155 (1.61 %) |
| 6 | budgerigar (paternal hap 2020) GCA_012275275.1 |
n/a | 13,127 (1.94 %) |
22,492 (2.30 %) |
n/a | 41.84 (98.98 %) |
737 (1.02 %) |
330 (100.00 %) |
505,478 (9.66 %) |
231,633 (2.15 %) |
5,778,405 (20.30 %) |
20,205 (1.61 %) |
| 7 | common bottlenose dolphin (maternal 2020) GCA_011762535.1 |
n/a | 18,837 (1.77 %) |
20,857 (1.43 %) |
n/a | 41.43 (99.73 %) |
649 (0.27 %) |
985 (100.00 %) |
4,073,893 (46.15 %) |
630,039 (2.15 %) |
12,628,219 (35.41 %) |
65,379 (1.89 %) |
| 8 | common bottlenose dolphin (maternal Y refseq 2020) GCF_011762595.1 |
67,207 (3.31 %) |
18,766 (1.77 %) |
20,528 (1.42 %) |
35,852 (1.58 %) |
41.44 (99.74 %) |
674 (0.26 %) |
362 (100.00 %) |
4,069,115 (46.17 %) |
628,982 (2.12 %) |
12,490,891 (35.29 %) |
65,551 (1.90 %) |
| 9 | common bottlenose dolphin (paternal 2020) GCA_011762515.1 |
n/a | 18,537 (1.77 %) |
20,619 (1.44 %) |
n/a | 41.42 (98.08 %) |
868 (1.92 %) |
1,166 (100.00 %) |
3,997,801 (45.93 %) |
609,838 (1.85 %) |
12,400,272 (34.53 %) |
64,630 (1.84 %) |
| 10 | sterlet (maternal hap 2022 genbank) GCA_902713425.1 |
n/a | 22,306 (1.80 %) |
33,366 (4.09 %) |
n/a | 39.56 (99.99 %) |
402 (0.01 %) |
245 (100.00 %) |
1,126,738 (3.36 %) |
889,853 (6.73 %) |
8,766,715 (39.22 %) |
51,356 (1.84 %) |
| 11 | sterlet (v2 paternal hap 2022) GCA_902713435.2 |
n/a | 24,717 (1.73 %) |
40,151 (4.13 %) |
74,807 (5.54 %) |
40.09 (99.99 %) |
475 (0.01 %) |
1,517 (100.00 %) |
1,844,596 (9.77 %) |
1,119,340 (9.88 %) |
9,372,934 (41.58 %) |
65,007 (2.74 %) |
| 12 | white-tufted-ear marmoset (maternal 2020) GCA_011078405.1 |
n/a | 21,684 (1.92 %) |
21,053 (1.29 %) |
n/a | 40.97 (99.58 %) |
1,068 (0.42 %) |
216 (100.00 %) |
5,099,933 (50.01 %) |
797,450 (2.45 %) |
15,059,591 (37.67 %) |
36,133 (0.92 %) |
| 13 | white-tufted-ear marmoset (paternal X 2020) GCA_011100555.1 |
n/a | 21,709 (1.91 %) |
21,245 (1.29 %) |
70,349 (2.24 %) |
40.95 (99.53 %) |
959 (0.47 %) |
353 (100.00 %) |
5,123,971 (49.94 %) |
785,181 (2.64 %) |
15,163,086 (37.93 %) |
36,768 (0.93 %) |
| 14 | white-tufted-ear marmoset (v1.2 paternal 2021) GCA_011100535.2 |
n/a | 21,014 (1.91 %) |
20,671 (1.30 %) |
n/a | 41.00 (99.58 %) |
994 (0.42 %) |
1,217 (100.00 %) |
4,785,940 (47.16 %) |
804,242 (3.32 %) |
14,427,732 (38.00 %) |
36,057 (0.95 %) |
| 15 | zebra finch (Blue55 paternal 2019) GCA_008822125.1 |
n/a | 12,384 (1.97 %) |
23,021 (2.44 %) |
n/a | 41.74 (98.02 %) |
828 (1.98 %) |
202 (100.00 %) |
511,324 (8.38 %) |
351,624 (2.53 %) |
6,328,918 (19.99 %) |
25,871 (2.29 %) |
| 16 | zebra finch (Blue55 paternal W 2020) GCF_008822105.2 |
50,407 (7.20 %) |
12,470 (1.95 %) |
23,352 (2.42 %) |
n/a | 41.81 (97.98 %) |
857 (2.02 %) |
205 (100.00 %) |
529,829 (9.55 %) |
357,586 (2.56 %) |
6,359,599 (20.12 %) |
27,755 (2.36 %) |
| 17 | zebra finch (v3 Blue55 maternal 2020) GCA_008822115.3 |
n/a | 11,950 (2.00 %) |
22,828 (2.51 %) |
n/a | 42.06 (98.45 %) |
583 (1.55 %) |
206 (100.00 %) |
494,110 (9.54 %) |
347,933 (2.80 %) |
5,875,448 (20.29 %) |
27,387 (2.57 %) |
| TOTALS: | total assembly count 17 | |||||||||||
| Alternate sets of VGP assemblies | NCBI Refseq | ||||
|---|---|---|---|---|---|
| Index pages: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Assembly statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Track statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |