VGP - Vertebrate Genomes Project assembly hubs, track statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of trio assemblies, maternal/paternal)

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 African grass rat
GCA_011750645.1
n/a 20,905
(2.00 %)
19,775
(1.45 %)
n/a 41.37
(98.89 %)
1,526
(1.11 %)
1,610
(100.00 %)
4,928,844
(37.45 %)
1,652,295
(5.20 %)
13,507,965
(32.27 %)
17,711
(0.50 %)
2 African grass rat
GCA_011762505.1
n/a 20,908
(1.99 %)
19,747
(1.45 %)
n/a 41.39
(99.19 %)
1,624
(0.81 %)
1,596
(100.00 %)
4,940,080
(37.33 %)
1,674,970
(5.40 %)
13,613,540
(32.71 %)
17,767
(0.51 %)
3 African grass rat
GCA_011762545.1
n/a 20,760
(1.99 %)
19,765
(1.45 %)
n/a 41.42
(97.70 %)
1,563
(2.30 %)
1,740
(100.00 %)
4,904,240
(37.25 %)
1,672,608
(5.37 %)
13,465,246
(32.19 %)
17,677
(0.50 %)
4 budgerigar
GCA_012275265.1
n/a 12,645
(1.89 %)
18,505
(2.70 %)
n/a 41.89
(94.20 %)
388
(5.80 %)
930
(100.00 %)
504,674
(9.95 %)
268,616
(3.12 %)
5,481,198
(20.78 %)
20,278
(1.55 %)
5 budgerigar
GCA_012275275.1
n/a 13,131
(1.94 %)
19,040
(2.75 %)
n/a 41.84
(98.98 %)
737
(1.02 %)
330
(100.00 %)
505,475
(9.66 %)
231,633
(2.15 %)
5,778,405
(20.30 %)
20,205
(1.61 %)
6 budgerigar
GCA_012275295.1
n/a 13,243
(1.87 %)
19,393
(2.66 %)
n/a 41.80
(99.72 %)
284
(0.28 %)
865
(100.00 %)
539,056
(10.20 %)
279,511
(3.12 %)
5,874,608
(22.08 %)
21,155
(1.61 %)
7 common bottlenose dolphin
GCA_011762515.1
n/a 18,561
(1.76 %)
21,110
(1.48 %)
n/a 41.42
(98.08 %)
868
(1.92 %)
1,166
(100.00 %)
3,997,798
(45.93 %)
609,838
(1.85 %)
12,400,272
(34.53 %)
64,630
(1.84 %)
8 common bottlenose dolphin
GCA_011762535.1
n/a 18,853
(1.76 %)
21,496
(1.48 %)
n/a 41.43
(99.73 %)
649
(0.27 %)
985
(100.00 %)
4,073,890
(46.15 %)
630,039
(2.15 %)
12,628,219
(35.41 %)
65,379
(1.89 %)
9 common bottlenose dolphin
GCF_011762595.1
67,220
(3.31 %)
18,774
(1.76 %)
20,983
(1.46 %)
n/a 41.44
(99.74 %)
674
(0.26 %)
362
(100.00 %)
3,974,528
(45.82 %)
628,982
(2.12 %)
12,490,891
(35.29 %)
65,551
(1.90 %)
10 sterlet
GCA_902713425.1
n/a 22,326
(1.80 %)
33,919
(4.12 %)
n/a 39.56
(99.99 %)
402
(0.01 %)
245
(100.00 %)
1,126,735
(3.36 %)
889,853
(6.73 %)
8,766,715
(39.22 %)
51,351
(1.78 %)
11 sterlet
GCA_902713435.1
n/a 22,726
(1.81 %)
34,878
(4.20 %)
n/a 39.60
(100.00 %)
422
(0.01 %)
224
(100.00 %)
1,145,500
(3.39 %)
912,936
(6.84 %)
8,839,174
(39.17 %)
52,552
(1.72 %)
12 white-tufted-ear marmoset
GCA_011078405.1
n/a 21,719
(1.91 %)
22,113
(1.37 %)
n/a 40.97
(99.58 %)
1,068
(0.42 %)
216
(100.00 %)
5,099,930
(50.01 %)
797,450
(2.45 %)
15,059,591
(37.67 %)
36,133
(0.92 %)
13 white-tufted-ear marmoset
GCA_011100535.1
n/a 20,978
(1.93 %)
21,563
(1.39 %)
n/a 41.04
(99.58 %)
788
(0.42 %)
336
(100.00 %)
4,869,004
(49.39 %)
746,577
(2.68 %)
14,347,286
(37.59 %)
35,222
(0.94 %)
14 white-tufted-ear marmoset
GCA_011100555.1
n/a 21,747
(1.90 %)
22,403
(1.37 %)
n/a 40.95
(99.53 %)
959
(0.47 %)
353
(100.00 %)
5,123,968
(49.94 %)
785,181
(2.64 %)
15,163,086
(37.93 %)
36,768
(0.93 %)
15 zebra finch
GCA_008822115.3
n/a 11,942
(1.99 %)
16,368
(2.73 %)
n/a 42.06
(98.45 %)
583
(1.55 %)
206
(100.00 %)
494,107
(9.54 %)
347,933
(2.80 %)
5,875,448
(20.29 %)
27,385
(2.54 %)
16 zebra finch
GCA_008822125.1
n/a 12,374
(1.97 %)
16,560
(2.63 %)
n/a 41.74
(98.02 %)
828
(1.98 %)
202
(100.00 %)
511,321
(8.38 %)
351,624
(2.53 %)
6,328,918
(19.99 %)
25,871
(2.29 %)
17 zebra finch
GCF_008822105.2
50,407
(7.20 %)
12,465
(1.95 %)
17,085
(2.63 %)
n/a 41.81
(97.98 %)
857
(2.02 %)
205
(100.00 %)
540,255
(9.53 %)
357,586
(2.56 %)
6,359,599
(20.12 %)
27,755
(2.36 %)
TOTALS:total assembly count 17

Alternate sets of VGP assemblies
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded