VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of legacy/superseded assemblies)

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 African grass rat (paternal X 2020 refseq) Arvicanthis niloticus GCF_011762505.1_mArvNil1.pat.X 1,595 2,496,761,438 1,624 20,289,527 37.17
2 African grass rat (v1 paternal X 2020 genbank) Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X 1,596 2,496,777,707 1,624 20,289,527 37.17
3 African grass rat (v2 paternal X 2024 genbank) Arvicanthis niloticus GCA_011762505.2_mArvNil1.pat.X 1,596 2,496,777,707 1,624 20,289,527 42.62
4 African savanna elephant (hap2 2023 genbank) Loxodonta africana GCA_030014295.1_mLoxAfr1.hap2 880 3,540,893,228 231 3,688,568 49.48
5 Andian cavefish (hap1 2023 genbank) Trichomycterus rosablanca GCA_030014385.1_fTriRos1.hap1 349 1,045,025,885 198 39,600 49.04
6 Anna's hummingbird (BGI_N300 2019 genbank) Calypte anna GCA_003957555.2_bCalAnn1_v1.p 160 1,059,706,240 429 16,096,788 20.87
7 Arabian camel (paternal hap 2024 genbank) Camelus dromedarius GCA_036321535.1_mCamDro1.pat 172 2,306,619,778 195 39,000 33.51
8 Atlantic bluefin tuna (primary hap 2024 genbank) Thunnus thynnus GCA_963924715.1_fThuThy2.1 120 799,063,593 468 93,600 33.12
9 Atlantic halibut (primary hap 2019 genbank) Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri 57 596,792,676 290 3,413,390 24.17
10 Atlantic mackerel (primary hap 2023 genbank) Scomber scombrus GCA_963691925.1_fScoSco1.1 666 764,157,853 1,489 297,822 29.96
11 Atlantic stingray (hap1 2023 genbank) Hypanus sabinus GCA_030144855.1_sHypSab1.hap1 2,990 4,044,886,845 1,648 329,600 51.80
12 ballan wrasse (primary hap 2024 genbank) Labrus bergylta GCA_963930695.1_fLabBer1.1 132 720,227,340 815 163,000 30.38
13 band-tailed pigeon (v1 hap2 2024 genbank) Patagioenas fasciata GCA_036971685.1_bPatFas1.hap2 453 1,410,058,165 219 8,369,264 31.75
14 barn swallow (v2 primary hap 2021 refseq) Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 617 1,105,955,550 1,102 25,534,411 21.06
15 barn swallow (v3 primary hap 2021 genbank) Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 617 1,105,955,550 1,102 25,534,411 21.06
16 Bellinger river turtle (v1 BRST_UC0152H_USYD 2024) Myuchelys georgesi GCA_040894355.1_rMyuGeo1.pri.20230808 129 1,980,051,792 57 11,400 26.49
17 black rhinoceros (primary hap 2021 genbank) Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur 1,075 3,005,519,209 215 1,368,861 40.15
18 black-headed gull (primary hap 2024 genbank) Chroicocephalus ridibundus GCA_963924245.1_bChrRid1.1 729 1,417,571,123 462 92,400 31.33
19 black-legged kittiwake (bRisTri1.patW 2023 genbank) Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 716 1,353,621,101 283 786,373 26.72
20 blackcap (primary hap 2019 genbank) Sylvia atricapilla GCA_009819655.1_bSylAtr1.pri 189 1,066,786,587 413 11,925,354 19.80
21 Blainville's beaked whale (primary hap 2022 genbank) Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype 73 2,683,375,131 97 700,303 41.79
22 blue whale (alternate hap JJ_BM4_2016_0621 2019) Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate 12,574 1,876,085,767 0 0 43.51
23 blue whale (JJ_BM4_2016_0621 v2 2020) Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 130 2,380,012,384 936 25,929,252 43.78
24 blunt-snouted clingfish (v1 2019 genbank) Gouania willdenowi GCA_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
25 blunt-snouted clingfish (v1 2019 refseq) Gouania willdenowi GCF_900634775.1_fGouWil2.1 441 937,150,793 1,160 14,353,515 42.93
26 Bornean orangutan (v1 AG05252 alternate hap 2023 genbank) Pongo pygmaeus GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt 215 3,038,229,980 36 3,505,721 54.20
27 Bornean orangutan (v1 AG05252 primary hap 2023 refseq) Pongo pygmaeus GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri 1,554 3,249,335,160 39 4,474,152 54.36
28 bowfin (hap1 2024 genbank) Amia calva GCA_036373705.1_fAmiCal2.hap1 390 989,120,851 97 19,400 37.74
29 brown anole (maternal hap 2024 genbank) Anolis sagrei GCA_037176765.1_rAnoSag1.mat 29 1,950,830,970 191 38,200 46.73
30 budgerigar (maternal Z 2020 genbank) Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z 865 1,171,635,651 284 3,236,129 22.13
31 California sea lion (alternate hap 2019) Zalophus californianus GCA_009762295.1_mZalCal1.alt 3,093 1,970,798,971 0 0 42.94
32 California sea lion (v1 2019) Zalophus californianus GCA_009762305.1_mZalCal1.pri 43 2,408,658,503 122 17,343,033 43.41
33 Canada lynx (alternate hap LIC74 2019) Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt 15,033 1,415,234,291 3 143 43.55
34 Canada lynx (LIC74 v1 2019) Lynx canadensis GCF_007474595.1_mLynCan4_v1.p 66 2,408,883,772 848 2,778,737 43.75
35 channel bull blenny (2019 genbank) Cottoperca gobio GCA_900634415.1_fCotGob3.1 322 609,391,784 445 2,553,975 28.72
36 chevron butterflyfish (hap1 2024 genbank) Chaetodon trifascialis GCA_039877785.1_fChaTrf1.hap1 37 662,505,520 49 9,600 23.31
37 chimpanzee (v1 AG18354 alternate hap 2023 genbank) Pan troglodytes GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt 119 3,015,383,096 22 6,632,458 48.80
38 chimpanzee (v1 AG18354 primary hap 2023 refseq) Pan troglodytes GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri 1,471 3,225,356,997 29 3,176,996 50.12
39 climbing perch (v1.2 2018 genbank) Anabas testudineus GCA_900324465.2_fAnaTes1.2 50 555,641,398 266 3,606,496 21.33
40 climbing perch (v1.2 2018 refseq) Anabas testudineus GCF_900324465.2_fAnaTes1.2 51 555,658,001 266 3,606,496 21.33
41 common bottlenose dolphin (maternal Y genbank 2020) Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y 362 2,378,522,214 674 6,222,516 46.05
42 common brushtail (genbank 2020) Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri 212 3,359,347,793 1,796 18,696,463 40.57
43 common cuckoo (bCucCan1 primary hap 2021 genbank) Cuculus canorus GCA_017976375.1_bCucCan1.pri 151 1,180,156,273 296 4,922,315 21.81
44 common spadefoot toad (primary hap 2024 genbank) Pelobates fuscus GCA_036172605.1_aPelFus1.pri 160 3,606,474,367 349 69,626 51.45
45 common swift (bApuApu2 2021 genbank) Apus apus GCA_020740795.1_bApuApu2.pri.cur 109 1,100,361,224 256 1,747,529 21.21
46 common vampire bat (v1 HL8 alternate hap 2022 genbank) Desmodus rotundus GCA_022682395.1_HLdesRot8B 430 1,976,149,209 580 232,283 31.24
47 common vampire bat (v1 HL8 primary hap 2022 genbank) Desmodus rotundus GCA_022682495.1_HLdesRot8A 572 2,113,473,284 611 255,063 32.58
48 common vampire bat (v1 HL8 primary hap 2022 refseq) Desmodus rotundus GCF_022682495.1_HLdesRot8A 573 2,113,489,943 611 255,063 32.58
49 corroboree frog (hap2 2023 genbank) Pseudophryne corroboree GCA_028390025.1_aPseCor3.hap2 3,127 8,872,758,793 2,699 21,212,457 75.08
50 Cory's shearwater (hap1.1 2024) Calonectris borealis GCA_964195595.1_bCalBor7.hap1.1 355 1,366,205,003 525 105,015 24.91
51 Cory's shearwater (hap2.1 2024) Calonectris borealis GCA_964196065.1_bCalBor7.hap2.1 249 1,169,960,687 477 95,400 22.10
52 denticle herring (v1 2019) Denticeps clupeoides GCF_900700375.1_fDenClu1.1 460 567,401,054 464 4,648,387 28.83
53 dorado (hap2 2023 genbank) Salminus brasiliensis GCA_030463535.1_fSalBra1.hap2 104 1,066,501,646 726 9,072,217 36.78
54 downy woodpecker (bDryPub1 primary hap 2020) Dryobates pubescens GCA_014839835.1_bDryPub1.pri 181 1,187,956,536 187 4,003,130 32.06
55 eastern happy (v2 2018) Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 249 880,445,564 490 1,186,663 30.80
56 emu (v1 ZJU1.0 2020) Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 802 1,247,468,792 512 46,323 19.17
57 epaulette shark (2021 genbank) Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. 1,963 3,983,483,121 3,716 77,564,682 43.90
58 Eurasian red squirrel (v1.1 2019) Sciurus vulgaris GCA_902686455.1_mSciVul1.1 638 2,878,591,032 1,177 163,358,994 33.78
59 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 216 2,297,765,997 872 6,026,660 32.43
60 European flounder (primary hap 2023 genbank) Platichthys flesus GCA_949316205.1_fPlaFle2.1 109 597,138,466 482 96,400 27.15
61 European pond turtle (hap1 2023 genbank) Emys orbicularis GCA_028017835.1_rEmyOrb1.hap1 106 2,309,740,635 148 3,324,230 35.43
62 European smelt (primary hap 2023 genbank) Osmerus eperlanus GCA_963692335.1_fOsmEpe2.1 1,008 508,737,883 2,462 492,400 35.91
63 European turtle dove (v1.1 alternate hap 2019) Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype 3,333 1,035,214,426 0 0 20.26
64 European turtle dove (v1.1 primary hap 2019) Streptopelia turtur GCA_901699155.1_bStrTur1.1 357 1,178,928,410 894 3,876,374 21.07
65 European woodmouse (2022 genbank) Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 498 2,889,801,511 1,129 225,617 40.60
66 false killer whale (hap1 2024 genbank) Pseudorca crassidens GCA_039906515.1_mPseCra1.hap1 439 2,674,608,476 123 2,797,992 41.86
67 flier cichlid (MPI-CPG 2019 genbank) Archocentrus centrarchus GCA_007364275.2_fArcCen1 189 932,947,025 744 16,903,477 30.69
68 Florida worm lizard (hap2 2023 genbank) Rhineura floridana GCA_030035675.1_rRhiFlo1.hap2 77 2,307,436,586 242 6,466,284 45.32
69 Gaboon caecilian (v1.1 2019 genbank) Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 163 3,779,413,726 433 5,502,713 52.86
70 Gaboon caecilian (v1.1 2019 refseq) Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 164 3,779,430,019 433 5,502,713 52.86
71 giant manta (hap1 2023 genbank) Mobula birostris GCA_030028105.1_sMobBir1.hap1 4,715 4,014,635,230 1,810 30,852,630 54.43
72 gilthead seabream (v1 2019) Sparus aurata GCF_900880675.1_fSpaAur1.1 176 833,595,063 1,050 342,268 25.72
73 golden eagle (v1.2 2019) Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 142 1,203,454,851 191 4,639,807 19.26
74 golden eagle (v1.2 alternate hap 2019) Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype 3,860 823,060,160 39 561,510 19.26
75 great cormorant (primary hap 2024 genbank) Phalacrocorax carbo GCA_963921805.1_bPhaCar2.1 351 1,283,643,005 493 98,600 22.67
76 great fruit-eating bat (v1 hap1 2024) Artibeus lituratus GCA_038363095.1_mArtLit.hap1 419 2,293,600,955 81 12,100 34.66
77 great potoo (primary hap 2020 genbank) Nyctibius grandis GCA_013368605.1_bNycGra1.pri 191 1,256,414,880 243 6,139,133 23.97
78 greater horseshoe bat (v1 MPI-CBG 2019 genbank) Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p 135 2,075,785,400 158 7,546,098 34.90
79 greater horseshoe bat (v1 MPI-CBG 2019 refseq) Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p 134 2,075,768,562 158 7,546,098 34.90
80 greater pipefish (v1.1 2019) Syngnathus acus GCA_901709675.1_fSynAcu1.1 87 324,331,233 43 13,700 25.95
81 greater sac-winged bat (primary hap 2024 genbank) Saccopteryx bilineata GCA_036850765.1_mSacBil1_pri_phased_curated 257 2,612,326,447 468 33,092,045 43.30
82 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri 99 2,134,593,249 294 11,959,915 31.97
83 grey whale (primary hap 2023 genbank) Eschrichtius robustus GCA_028021215.1_mEscRob2.pri 704 2,982,434,994 279 55,800 46.40
84 harbor porpoise (primary hap 2024 genbank) Phocoena phocoena GCA_963924675.1_mPhoPho1.1 440 2,512,729,496 966 193,200 39.05
85 hemichordates Saccoglossus HW-2024a (v1 hap1 2024) Saccoglossus sp. HW-2024a GCA_040954625.1_ASM4095462v1 77 328,607,491 254 127,000 29.41
86 hemichordates Saccoglossus HW-2024a (v1 hap2 2024) Saccoglossus sp. HW-2024a GCA_040954595.1_ASM4095459v1 56 322,493,648 254 127,000 28.78
87 hourglass treefrog (paternal 2023 genbank) Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat 2,200 2,214,937,069 804 6,692,944 51.44
88 house finch (primary hap 2022 genbank) Haemorhous mexicanus GCA_027477595.1_bHaeMex1.pri 183 1,148,216,196 295 11,207,145 23.53
89 house sparrow (hap1 2024 genbank) Passer domesticus GCA_036417665.1_bPasDom1.hap1 334 1,310,114,252 202 40,400 30.41
90 Indian glassy fish (v1 2019) Parambassis ranga GCF_900634625.1_fParRan2.1 156 551,012,959 1,523 10,561,548 25.10
91 Japanese sawshark (hap1 2024 genbank) Pristiophorus japonicus GCA_044704955.1_sPriJap1.hap1 4,317 5,923,050,865 5,985 1,196,474 73.12
92 kakapo (Jane v2 2020 genbank) Strigops habroptila GCA_004027225.2_bStrHab1.2.pri 90 1,148,615,375 373 10,544,081 20.53
93 Korean giant-fin mudskipper (v1 primary hap 2020 genbank) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri 124 752,621,857 700 7,178,561 39.10
94 Korean giant-fin mudskipper (v1 primary hap 2020 refseq) Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri 124 752,621,858 700 7,178,561 39.10
95 lanner falcon (bFalBia1 primary hap 2022 genbank) Falco biarmicus GCA_023638135.1_bFalBia1.pri 397 1,285,492,283 158 2,152,808 23.59
96 leatherback sea turtle (v1 2019 genbank G10K) Dermochelys coriacea GCA_009764565.1_rDerCor1.pri 55 2,165,403,198 558 5,729,700 34.13
97 leatherback sea turtle (v1 alternate hap 2019) Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
98 leatherback sea turtle (v3 2020 refseq G10K) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 40 2,164,762,090 667 5,594,612 34.21
99 lesser kestrel (v1 2021) Falco naumanni GCF_017639655.1_bFalNau1.pat 291 1,215,719,379 298 4,077,287 19.20
100 lesser noctule (v1 hap1 2024) Nyctalus leisleri GCA_964264875.1_mNycLei1.hap1.1 1,281 2,233,532,335 1,662 332,400 42.92
101 lesser noctule (v1 hap2 2024) Nyctalus leisleri GCA_964264895.1_mNycLei1.hap2.1 1,335 2,011,002,017 1,563 312,615 40.03
102 lesser rhea (primary hap 2023 genbank) Rhea pennata GCA_028389875.1_bPtePen1.pri 179 1,269,000,025 128 1,451,673 22.80
103 lesser sac-winged bat (primary hap 2024 genbank) Saccopteryx leptura GCA_036850995.1_mSacLep1_pri_phased_curated 167 2,576,497,192 573 19,614,433 42.31
104 lesser salmon catfish (primary hap 2023 genbank) Neoarius graeffei GCA_027579695.1_fNeoGra1.pri 38 2,341,916,362 334 13,260,140 62.77
105 live sharksucker (v1 2019) Echeneis naucrates GCF_900963305.1_fEcheNa1.1 38 544,229,245 140 599,356 21.82
106 long-finned pilot whale (v1 primary hap 2023) Globicephala melas GCF_963455315.1_mGloMel1.1 993 2,651,292,441 1,084 216,617 42.02
107 long-finned pilot whale (v2 primary hap 2024 genbank) Globicephala melas GCA_963455315.2_mGloMel1.2 993 2,651,292,441 1,084 216,617 42.02
108 long-tailed hermit (v1 PSU5 primary hap 2022) Phaethornis superciliosus GCA_023637945.1_DD_ASM_B1 70 1,020,112,811 141 3,809,484 20.12
109 lumpfish (primary hap 2019 genbank) Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri 49 572,902,877 347 10,182,204 28.09
110 mimic poison frog (primary hap 2023 genbank) Ranitomeya imitator GCA_032444005.1_aRanImi1.pri 1,673 5,956,630,009 765 80,159 77.60
111 mute swan (bCygOlo1 v1 alternate hap 2019) Cygnus olor GCA_009769485.1_bCygOlo1.alt 5,613 814,162,536 3 85 19.97
112 mute swan (v1 primary hap 2019) Cygnus olor GCA_009769625.1_bCygOlo1.pri 181 1,135,009,278 446 10,642,469 21.24
113 Natterer's bat (hap1.1 2024) Myotis nattereri GCA_964212035.1_mMyoNat1.hap1.1 343 2,124,021,592 1,620 324,000 38.31
114 Natterer's bat (hap2.1 2024) Myotis nattereri GCA_964212025.1_mMyoNat1.hap2.1 319 1,930,603,033 1,387 277,415 36.68
115 Nelson's sparrow (bAmmNel1 primary hap 2023 genbank) Ammospiza nelsoni GCA_027579445.1_bAmmNel1.pri 77 1,185,463,352 215 5,092,979 25.88
116 New Zealand spotty (primary hap 2019 genbank) Notolabrus celidotus GCA_009762535.1_fNotCel1.pri 468 846,760,650 1,135 14,268,481 33.39
117 Nicobar pigeon (hap1 2024 genbank) Caloenas nicobarica GCA_036013445.1_bCalNic1.hap1 807 1,285,851,275 117 20,400 28.09
118 nine-banded armadillo (v1 hap1 2023) Dasypus novemcinctus GCA_030445055.1_mDasNov1.hap1 594 3,335,791,168 845 24,283,244 42.43
119 nine-banded armadillo (v1 hap2 2023) Dasypus novemcinctus GCF_030445035.1_mDasNov1.hap2 539 3,570,966,115 771 11,475,092 43.66
120 ninespine stickleback (primary hap 2023 genbank) Pungitius pungitius GCA_949316345.1_fPunPun2.1 175 480,450,674 738 147,600 28.40
121 North Island brown kiwi (hap1 2024 genbank) Apteryx mantelli GCA_036417845.1_bAptMan1.hap1 409 1,504,415,252 170 34,000 27.67
122 northern goshawk (v1 primary hap 2022 refseq) Astur gentilis GCF_929443795.1_bAccGen1.1 454 1,398,011,397 183 36,600 27.31
123 northern pike (primary hap 2020 genbank) Esox lucius GCA_011004845.1_fEsoLuc1.pri 53 918,749,000 112 1,022,735 32.97
124 northern pintail (primary hap 2024 genbank) Anas acuta GCA_963932015.1_bAnaAcu1.1 395 1,189,313,589 631 125,881 25.92
125 pale spear-nosed bat (alternate hap MPI-MPIP 2019) Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h 10,835 2,050,602,545 38 18,868 29.66
126 pale spear-nosed bat (MPI-MPIP v1 2019) Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p 141 2,117,764,065 831 22,966,458 30.49
127 Papuan ground boa (hap2 2024 genbank) Candoia aspera GCA_035149785.1_rCanAsp1.hap2 150 1,530,827,941 101 20,200 33.56
128 peregrine falcon (bFalPer1 primary hap 2022 genbank) Falco peregrinus GCA_023634155.1_bFalPer1.pri 124 1,311,580,791 232 4,014,385 24.67
129 Philippine flying lemur (primary hap 2022 genbank) Cynocephalus volans GCA_027409185.1_mCynVol1.pri 131 2,814,434,834 116 32,500 39.52
130 pig-tailed macaque (mMacNem1hap1 2024 genbank) Macaca nemestrina GCA_043159975.1_mMacNem.hap1 362 3,116,305,216 260 45,400 53.54
131 platypus (Pmale09 v3 2020) Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 322 1,859,281,749 515 15,158,118 51.26
132 prehistoric monster fish (2019 genbank) Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 464 2,446,592,878 2,554 12,594,266 59.92
133 Puerto Rican coqui (hap1 2024 genbank) Eleutherodactylus coqui GCA_035609145.1_aEleCoq1.hap1 957 3,371,316,047 659 131,800 54.01
134 pygmy chimpanzee (v1 primary hap 2023) Pan paniscus GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri 443 3,271,621,005 8 1,240,299 43.81
135 pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank) Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 580 2,555,838,840 143 4,797,769 39.97
136 rabbit (primary hap 2024 genbank) Oryctolagus cuniculus GCA_964237555.1_mOryCun1.1 222 2,804,674,863 2,276 455,200 41.73
137 red-fronted tinkerbird (primary hap 2020 genbank) Pogoniulus pusillus GCA_015220805.1_bPogPus1.pri 253 1,272,358,903 307 6,012,757 35.91
138 reedfish (2019) Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 1,885 3,811,038,701 5,614 238,294,611 44.57
139 reedfish (v1 alternate hap 2019) Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
140 river trout (v1 2019) Salmo trutta GCF_901001165.1_fSalTru1.1 1,441 2,371,880,186 3,941 73,600,705 52.45
141 rock pigeon (v1 racing homer maternal hap 2024) Columba livia GCA_036010775.1_bColLiv1.mat 650 1,181,506,259 192 37,200 28.60
142 rock pigeon (v1 racing homer paternal W 2024) Columba livia GCA_036013475.1_bColLiv1.pat.W 870 1,325,583,211 248 46,800 29.94
143 rock pigeon (v2 racing homer 2024 genbank) Columba livia GCA_036013475.2_bColLiv1.pat.W.v2 870 1,325,583,311 249 46,900 29.94
144 rough bullseye (RE-2024b hap1 2024 genbank) Pempheris klunzingeri GCA_042242105.1_fPemKlu1.hap1 441 646,252,061 87 17,200 30.17
145 royal ground snake (hap1 2023 genbank) Erythrolamprus reginae GCA_031021105.1_rEryReg1.hap1 400 1,964,049,041 1,391 278,200 53.46
146 saddleback dolphin (v1 primary hap 2023 genbank) Delphinus delphis GCA_949987515.1_mDelDel1.1 631 2,663,533,373 968 193,431 42.65
147 saddleback dolphin (v1 primary hap 2023 refseq) Delphinus delphis GCF_949987515.1_mDelDel1.1 630 2,663,516,986 968 193,431 42.65
148 Saker falcon (bFalChe1 primary hap 2022 genbank) Falco cherrug GCA_023634085.1_bFalChe1.pri 282 1,309,366,964 258 3,961,655 24.96
149 saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank) Ammospiza caudacuta GCA_027887145.1_bAmmCau1.pri 282 1,241,209,685 363 2,919,107 29.04
150 San Diegan tiger whiptail (v1.0 HBS 135688 primary hap 2022) Aspidoscelis tigris stejnegeri GCA_023333525.1_rAspTig1.0.p 74 1,335,668,279 39 3,900 36.99
151 San Diego alligator lizard (v1.0 HBS135686 primary hap 2022) Elgaria multicarinata webbii GCA_023053635.1_rElgMul1.0.p 85 1,790,509,355 23 2,300 40.44
152 San Diego alligator lizard (v1.1 HBS135686 primary hap 2024 genbank) Elgaria multicarinata webbii GCA_023053635.2_rElgMul1.1.pri 35 1,790,519,499 73 12,700 40.44
153 sardine (primary hap 2023 genbank) Sardina pilchardus GCA_963854185.1_fSarPil1.1 241 869,414,035 1,654 330,800 37.59
154 Schreibers' long-fingered bat (v1 hap1 2024) Miniopterus schreibersii GCA_964146895.1_mMinSch1.hap1.1 265 1,852,127,854 1,322 264,400 31.12
155 Schreibers' long-fingered bat (v1 hap2 2024) Miniopterus schreibersii GCA_964145185.1_mMinSch1.hap2.1 168 1,693,881,420 1,137 227,400 29.33
156 sea lamprey (alternate hap 2020) Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
157 sea lamprey (primary hap 2020) Petromyzon marinus GCF_010993605.1_kPetMar1.pri 1,434 1,089,050,413 930 15,013,687 50.62
158 sharpnose sevengill shark (hap1 2024 genbank) Heptranchias perlo GCF_035084215.1_sHepPer1.hap1 1,879 3,249,915,908 1,834 366,800 57.50
159 siamang (v1 Jambi primary hap 2023) Symphalangus syndactylus GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri 605 3,182,923,232 1 100 56.01
160 siamang (v2 Jambi primary hap 2024 refseq) Symphalangus syndactylus GCF_028878055.2_NHGRI_mSymSyn1-v2.0_pri 27 3,262,904,224 2 1,000,001 55.90
161 siamang (v2 Jambi alternate hap 2024) Symphalangus syndactylus GCA_028878085.2_NHGRI_mSymSyn1-v2.0_alt 40 3,097,367,794 3 2,150,000 55.60
162 Siamese fighting fish (v1 alternate hap 2019) Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
163 Siamese fighting fish (v2 primary hap 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 70 441,388,503 328 29,269 23.93
164 Siamese fighting fish (v3 primary hap 2020) Betta splendens GCF_900634795.3_fBetSpl5.3 70 441,388,503 328 29,269 23.93
165 Skyros wall lizard (v1 hap1 2024) Podarcis gaigeae GCA_964106915.1_rPodGai1.hap1.1 211 1,514,643,635 883 176,600 38.22
166 smaller spotted catshark (v1.1 primary hap 2020 refseq) Scyliorhinus canicula GCF_902713615.1_sScyCan1.1 646 4,220,406,627 7,146 64,220,747 51.42
167 smalltooth sawfish (v2 primary hap 2019 genbank) Pristis pectinata GCA_009764475.1_sPriPec2.pri 173 2,267,857,790 698 20,562,876 38.20
168 song sparrow (primary hap 2024 genbank) Melospiza melodia melodia GCA_035770615.1_bMelMel2.pri 354 1,541,261,971 299 1,079,098 39.28
169 speckled mousebird (hap1 2023 genbank) Colius striatus GCA_028858725.1_bColStr4.hap1 189 1,123,441,015 143 5,827,944 23.45
170 speckled mousebird (v1 hap2 2023) Colius striatus GCA_028858625.1_bColStr4.hap2 243 1,242,527,572 151 5,489,805 25.54
171 sterlet (v1 paternal hap 2020) Acipenser ruthenus GCA_902713435.1_fAciRut3.1_paternal_haplotype 224 1,663,879,616 422 83,585 39.19
172 Sumatran orangutan (v1 AG06213 primary hap 2023) Pongo abelii GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri 2,611 3,365,490,689 59 7,178,544 55.11
173 Swainson's thrush (bCatUst1 v1 alternate hap 2019) Catharus ustulatus GCA_009819505.1_bCatUst1.alt 3,601 1,128,658,440 13 343 22.74
174 Swainson's thrush (v1 primary hap 2019) Catharus ustulatus GCF_009819885.1_bCatUst1.pri 161 1,131,616,430 428 12,903,595 22.52
175 swamp sparrow (bMelGeo1 primary hap 2023 genbank) Melospiza georgiana GCA_028018845.1_bMelGeo1.pri 40 1,162,015,399 236 1,233,091 24.53
176 tammar wallaby (v1 primary hap 2023 genbank) Notamacropus eugenii GCA_028372415.1_mMacEug1.pri 315 3,448,908,279 515 6,550,697 39.53
177 thorny skate (v1 CabotCenter1 v1 2020 refseq) Amblyraja radiata GCF_010909765.1_sAmbRad1.pri 957 2,558,784,953 3,753 190,972,533 52.28
178 thorny skate (v1 primary hap CabotCenter1 2020 genbank) Amblyraja radiata GCA_010909765.1_sAmbRad1.pri 958 2,558,801,738 3,753 190,972,533 52.28
179 tiny Cayenne caecilian (v1 2019) Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
180 tourmaline sunangel (hap1 2024 genbank) Heliangelus exortis GCA_036169615.1_bHelExo1.hap1 131 1,049,650,714 437 85,400 21.23
181 torafugu (fTakRub1.2 2019 refseq) Takifugu rubripes GCF_901000725.2_fTakRub1.2 128 384,126,662 402 3,688,529 20.93
182 trahira (v1 hap1 2024 refseq) Hoplias malabaricus GCF_029633855.1_fHopMal1.hap1 598 1,186,371,479 989 65,101,941 37.57
183 Tungara frog (aEngPut4 maternal hap 2024 genbank) Engystomops pustulosus GCA_040894005.1_aEngPut4.maternal 936 2,158,203,323 436 87,200 52.56
184 two-lined caecilian (v1.1 2019 refseq) Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 66.86
185 village indigobird (merged hap OUT-0048 2022 genbank) Vidua chalybeata GCA_026979565.1_bVidCha1_merged_haplotype 178 1,080,457,469 458 165,531 20.96
186 western European hedgehog (primary hap 2023 genbank) Erinaceus europaeus GCA_950295315.1_mEriEur2.1 1,175 2,720,701,264 3,760 752,000 54.51
187 western lowland gorilla (v1.1 KB3781 2023) Gorilla gorilla gorilla GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri 637 3,600,562,452 38 5,248,239 51.22
188 western lowland gorilla (v2.1 KB3781 2024 refseq) Gorilla gorilla gorilla GCF_029281585.2_NHGRI_mGorGor1-v2.1_pri 26 3,545,850,636 2 2,000,000 50.91
189 white leghorn X broiler chicken (v1 leghorn haplotype v1 2021) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w 255 953,182,234 254 3,312,879 20.28
190 white-beaked dolphin (primary hap 2023 genbank) Lagenorhynchus albirostris GCA_949774975.1_mLagAlb1.1 410 2,544,835,795 1,070 214,000 39.75
191 white-crowned manakin (hap1 2024 genbank) Pseudopipra pipra GCA_036250125.1_bDixPip1.hap1 697 1,165,219,370 323 64,600 21.92
192 white-tailed eagle (primary hap 2022 genbank) Haliaeetus albicilla GCA_947461875.1_bHalAlb1.1 188 1,320,298,205 424 84,800 23.68
193 white-throated dipper (primary hap 2023 genbank) Cinclus cinclus GCA_963662255.1_bCinCin1.1 278 1,170,855,695 658 131,600 26.63
194 white-tufted-ear marmoset (v1 paternal hap 2020) Callithrix jacchus GCA_011100535.1_mCalJac1.pat 336 2,682,316,413 788 11,206,679 49.24
195 yellow-bellied marmot (hap1 2025 genbank) Marmota flaviventris GCA_047511675.1_mMarFla1.hap1 814 2,704,668,329 330 55,900 34.99
196 zebra finch (alternate hap Black17 2018) Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h 5,336 965,644,423 45 136,365 20.33
197 zebra finch (Blue55 female 2020 genbank) Taeniopygia guttata GCA_009859065.2_bTaeGut2.pri.v2 541 1,106,297,559 789 21,820,589 20.08
198 zebra finch (v1 Black17 2019 refseq) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
199 zebra finch (v1 Black17 male 2019 genbank) Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p 135 1,058,012,133 312 2,334,250 21.55
200 zig-zag eel (v1.2 2019 refseq) Mastacembelus armatus GCF_900324485.2_fMasArm1.2 123 591,951,587 238 13,231,344 23.47
TOTALS:total assembly count 200 216,442 381,875,607,800 146,484 2,050,453,478  
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies