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VGP - Vertebrate Genomes Project assembly hubs, track statistics
This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)
See also: hub access, assembly statistics
Data resource links
NOTE: Click on the column headers to sort the table by that columnThe link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Abyssinian ground-hornbill GCA_009769595.1 |
n/a | 11,948 (1.86 %) |
22,509 (2.24 %) |
n/a | 43.51 (100.00 %) |
n/a | 3,527 (100.00 %) |
361,147 (5.36 %) |
125,372 (0.75 %) |
5,917,083 (18.51 %) |
38,787 (3.82 %) |
| 2 | American flamingo GCA_009819805.1 |
n/a | 12,384 (1.73 %) |
23,611 (2.05 %) |
n/a | 43.35 (100.00 %) |
n/a | 3,529 (100.00 %) |
496,877 (7.22 %) |
162,522 (0.74 %) |
6,684,675 (20.14 %) |
51,895 (5.89 %) |
| 3 | American shad (fAloSap1 alternate hap 2021) GCA_018492705.1 |
n/a | 15,901 (2.25 %) |
61,133 (6.37 %) |
n/a | 43.14 (100.00 %) |
1 (0.00 %) |
5,411 (100.00 %) |
2,043,181 (23.64 %) |
1,141,539 (11.35 %) |
3,668,314 (38.60 %) |
40,218 (2.14 %) |
| 4 | Anna's hummingbird GCA_003957575.1 |
n/a | 11,084 (1.90 %) |
19,321 (2.14 %) |
n/a | 41.32 (100.00 %) |
6 (0.00 %) |
3,803 (100.00 %) |
475,493 (7.41 %) |
223,791 (1.37 %) |
5,585,250 (20.30 %) |
14,903 (1.46 %) |
| 5 | Aristotle's catfish (alternate hap 2022) GCA_946807865.1 |
n/a | 14,032 (2.44 %) |
39,770 (4.92 %) |
n/a | 38.85 (100.00 %) |
n/a | 7,617 (100.00 %) |
1,808,149 (37.98 %) |
583,449 (10.56 %) |
4,203,368 (40.67 %) |
24,867 (2.06 %) |
| 6 | Asian bonytongue GCA_900964985.2 |
n/a | 16,053 (2.73 %) |
74,777 (7.26 %) |
n/a | 44.15 (100.00 %) |
1 (0.00 %) |
2,006 (100.00 %) |
482,351 (3.03 %) |
207,018 (1.68 %) |
4,139,370 (26.26 %) |
85,546 (10.82 %) |
| 7 | Asiatic elephant (mEleMax1 alternate hap 2022) GCA_024166345.1 |
n/a | 17,906 (1.18 %) |
21,966 (1.14 %) |
n/a | 41.14 (100.00 %) |
n/a | 6,361 (100.00 %) |
3,818,524 (29.72 %) |
533,426 (3.22 %) |
14,381,781 (47.30 %) |
50,264 (1.15 %) |
| 8 | Atlantic cod GCA_902167395.1 |
n/a | 13,366 (2.68 %) |
66,599 (9.29 %) |
n/a | 45.55 (100.00 %) |
3 (0.00 %) |
3,592 (100.00 %) |
696,727 (10.13 %) |
749,876 (13.00 %) |
2,554,769 (33.77 %) |
87,167 (8.03 %) |
| 9 | Atlantic halibut GCA_009819745.1 |
n/a | 16,554 (3.01 %) |
54,832 (7.45 %) |
n/a | 42.29 (100.00 %) |
62 (0.00 %) |
4,053 (100.00 %) |
494,008 (4.23 %) |
299,066 (3.87 %) |
4,272,649 (24.46 %) |
36,868 (2.33 %) |
| 10 | Atlantic horse mackerel (alternate hap 2021) GCA_905171655.2 |
n/a | 15,331 (2.42 %) |
52,370 (6.91 %) |
n/a | 41.96 (100.00 %) |
74 (0.00 %) |
1,049 (100.00 %) |
1,454,631 (18.29 %) |
383,946 (4.34 %) |
4,363,016 (32.69 %) |
56,416 (3.08 %) |
| 11 | Australian echidna (mTacAcu1 alternate hap 2020) GCA_015852515.1 |
n/a | 13,505 (1.03 %) |
18,978 (1.47 %) |
n/a | 45.32 (99.98 %) |
26 (0.02 %) |
3,482 (100.00 %) |
6,880,857 (41.88 %) |
1,099,932 (7.47 %) |
8,156,735 (56.68 %) |
70,515 (2.88 %) |
| 12 | banded archerfish (fToxJac2 alternate hap 2021) GCA_017976295.1 |
n/a | 15,211 (3.23 %) |
41,620 (7.14 %) |
n/a | 41.08 (100.00 %) |
2 (0.00 %) |
2,393 (100.00 %) |
785,178 (17.57 %) |
249,148 (8.36 %) |
3,391,653 (26.49 %) |
13,787 (0.93 %) |
| 13 | barbel (alternate hap 2022) GCA_936446605.1 |
n/a | 26,794 (3.15 %) |
76,434 (5.64 %) |
n/a | 37.81 (100.00 %) |
1 (0.00 %) |
8,035 (100.00 %) |
4,084,361 (52.18 %) |
538,411 (4.25 %) |
7,659,980 (38.94 %) |
58,008 (2.90 %) |
| 14 | Barn swallow (bHirRus1 v3 alternate hap 2021) GCA_015227815.3 |
n/a | 11,132 (1.94 %) |
20,993 (2.40 %) |
n/a | 42.41 (100.00 %) |
6 (0.00 %) |
2,476 (100.00 %) |
550,072 (10.78 %) |
282,378 (2.00 %) |
5,634,117 (20.43 %) |
30,305 (2.79 %) |
| 15 | black rhinoceros (alternate hap 2021) GCA_020826835.1 |
n/a | 19,000 (1.37 %) |
22,547 (1.26 %) |
n/a | 41.56 (99.97 %) |
178 (0.03 %) |
1,199 (100.00 %) |
4,340,245 (37.22 %) |
564,468 (8.07 %) |
14,384,523 (40.40 %) |
44,971 (1.16 %) |
| 16 | blackcap GCA_009819715.1 |
n/a | 11,586 (1.87 %) |
22,618 (2.41 %) |
n/a | 42.17 (100.00 %) |
2 (0.00 %) |
3,566 (100.00 %) |
473,456 (5.97 %) |
308,518 (2.29 %) |
5,987,640 (19.64 %) |
25,451 (2.38 %) |
| 17 | Blainville's beaked whale (mMesDen1 alternate hap 2022) GCA_025094165.1 |
n/a | 17,838 (1.54 %) |
21,389 (1.35 %) |
n/a | 41.71 (100.00 %) |
1 (0.00 %) |
5,198 (100.00 %) |
3,542,727 (35.35 %) |
650,369 (8.86 %) |
10,971,320 (41.15 %) |
62,389 (1.68 %) |
| 18 | Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020) GCA_008658375.2 |
n/a | 16,997 (1.82 %) |
20,609 (1.44 %) |
n/a | 41.20 (100.00 %) |
3 (0.00 %) |
10,999 (100.00 %) |
3,126,800 (43.49 %) |
454,452 (1.23 %) |
9,916,868 (33.63 %) |
55,436 (1.85 %) |
| 19 | blunt-snouted clingfish GCA_900650505.1 |
n/a | 12,494 (1.93 %) |
44,967 (5.14 %) |
n/a | 38.20 (100.00 %) |
1 (0.00 %) |
7,675 (100.00 %) |
608,174 (4.23 %) |
390,755 (4.71 %) |
4,977,071 (42.41 %) |
23,532 (1.46 %) |
| 20 | Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) GCA_017639755.1 |
n/a | 13,882 (2.27 %) |
45,919 (5.98 %) |
n/a | 39.50 (99.99 %) |
45 (0.01 %) |
3,194 (100.00 %) |
803,073 (13.60 %) |
258,404 (4.19 %) |
4,674,614 (28.36 %) |
15,524 (1.02 %) |
| 21 | bonti-bonti (fTelBon1 alternate hap 2022) GCA_933228925.1 |
n/a | 12,424 (1.95 %) |
46,550 (6.00 %) |
n/a | 41.63 (100.00 %) |
n/a | 4,619 (100.00 %) |
789,207 (14.61 %) |
348,482 (20.98 %) |
3,447,241 (38.72 %) |
27,035 (4.16 %) |
| 22 | butterfish (fScaArg1 alternate hap 2021) GCA_020382915.1 |
n/a | 15,228 (3.42 %) |
41,322 (7.36 %) |
n/a | 41.47 (100.00 %) |
4 (0.00 %) |
1,592 (100.00 %) |
972,098 (18.43 %) |
155,031 (1.41 %) |
3,452,400 (21.36 %) |
15,255 (1.12 %) |
| 23 | California sea lion (mZalCal1 alternate hap 2020) GCA_009762295.2 |
n/a | 18,319 (1.81 %) |
18,772 (1.48 %) |
n/a | 41.58 (100.00 %) |
n/a | 3,096 (100.00 %) |
3,724,021 (42.91 %) |
488,356 (1.26 %) |
10,891,276 (33.15 %) |
44,467 (1.57 %) |
| 24 | Canada lynx (LIC74 v2 alternate hap 2020) GCA_007474575.2 |
n/a | 12,041 (1.42 %) |
15,226 (1.16 %) |
n/a | 41.46 (100.00 %) |
5 (0.00 %) |
15,046 (100.00 %) |
2,939,291 (43.50 %) |
544,849 (1.76 %) |
7,650,345 (32.74 %) |
39,099 (2.44 %) |
| 25 | carmine bee-eater GCA_009819585.1 |
n/a | 12,381 (1.76 %) |
28,865 (2.78 %) |
n/a | 43.05 (100.00 %) |
n/a | 3,296 (100.00 %) |
542,765 (7.77 %) |
204,389 (1.06 %) |
6,415,832 (21.53 %) |
31,638 (2.54 %) |
| 26 | channel bull blenny GCA_900634435.1 |
n/a | 15,980 (2.79 %) |
53,680 (6.62 %) |
n/a | 40.96 (100.00 %) |
10 (0.00 %) |
11,565 (100.00 %) |
451,656 (4.76 %) |
321,158 (5.51 %) |
3,800,099 (26.83 %) |
20,338 (1.21 %) |
| 27 | chicken (Cobb bGalGal5 alternate hap 2022) GCA_027408205.1 |
n/a | 11,740 (2.36 %) |
21,473 (2.56 %) |
n/a | 42.25 (100.00 %) |
4 (0.00 %) |
2,263 (100.00 %) |
551,116 (10.78 %) |
241,638 (4.43 %) |
4,973,260 (21.77 %) |
21,151 (2.71 %) |
| 28 | chicken (Ross bGalGal4 alternate hap 2022) GCA_027408255.1 |
n/a | 11,339 (2.33 %) |
20,588 (2.51 %) |
n/a | 42.16 (100.00 %) |
1 (0.00 %) |
2,684 (100.00 %) |
537,847 (10.84 %) |
217,964 (3.81 %) |
4,879,985 (21.43 %) |
19,653 (2.66 %) |
| 29 | chicken (matHap) GCF_016699485.2 |
74,716 (9.14 %) |
13,128 (2.33 %) |
23,484 (2.48 %) |
n/a | 42.20 (99.68 %) |
463 (0.32 %) |
677 (99.68 %) |
697,827 (12.53 %) |
290,892 (2.63 %) |
5,887,021 (21.30 %) |
24,469 (2.59 %) |
| 30 | chicken (patHap) GCF_016700215.1 |
55,865 (8.86 %) |
12,310 (2.41 %) |
22,056 (2.57 %) |
n/a | 42.20 (99.65 %) |
254 (0.35 %) |
509 (99.65 %) |
604,452 (10.76 %) |
232,416 (2.03 %) |
5,541,059 (20.23 %) |
22,185 (2.62 %) |
| 31 | chub mackerel (fScoJap1 alternate hap 2022) GCA_027409835.1 |
n/a | 15,165 (2.44 %) |
46,105 (6.16 %) |
n/a | 39.93 (100.00 %) |
1 (0.00 %) |
2,163 (100.00 %) |
1,546,066 (27.08 %) |
537,737 (9.87 %) |
4,485,153 (30.70 %) |
14,774 (0.81 %) |
| 32 | climbing perch GCA_900650485.1 |
n/a | 14,940 (3.51 %) |
39,688 (7.41 %) |
n/a | 40.40 (99.61 %) |
36 (0.39 %) |
2,641 (100.00 %) |
307,993 (2.63 %) |
121,935 (1.79 %) |
3,190,928 (20.98 %) |
10,131 (0.86 %) |
| 33 | common brushtail (alternate hap 2020) GCA_011100645.1 |
n/a | 14,863 (0.75 %) |
15,426 (0.89 %) |
n/a | 39.41 (100.00 %) |
313 (0.00 %) |
12,446 (100.00 %) |
5,846,769 (38.56 %) |
987,917 (1.99 %) |
16,764,356 (40.14 %) |
13,303 (0.35 %) |
| 34 | common cuckoo (bCucCan1 alternate hap 2021) GCA_017976305.1 |
n/a | 12,464 (1.91 %) |
24,623 (2.50 %) |
n/a | 42.28 (100.00 %) |
8 (0.00 %) |
1,004 (100.00 %) |
505,582 (10.93 %) |
292,484 (2.48 %) |
6,061,828 (21.38 %) |
24,010 (1.80 %) |
| 35 | common myna (bArcTri1 alternate hap 2023) GCA_027559525.1 |
n/a | 10,692 (1.77 %) |
20,925 (2.29 %) |
n/a | 42.15 (100.00 %) |
1 (0.00 %) |
2,221 (100.00 %) |
328,602 (4.16 %) |
604,057 (8.02 %) |
5,233,128 (25.06 %) |
25,210 (3.70 %) |
| 36 | common swift (bApuApu2 alternate hap 2021) GCA_020740585.1 |
n/a | 11,653 (1.89 %) |
19,731 (2.20 %) |
n/a | 42.01 (100.00 %) |
5 (0.00 %) |
1,697 (100.00 %) |
443,384 (6.09 %) |
185,968 (1.18 %) |
5,916,553 (20.88 %) |
18,864 (1.75 %) |
| 37 | common tern GCA_009819645.1 |
n/a | 12,773 (1.79 %) |
24,751 (2.23 %) |
n/a | 43.24 (100.00 %) |
n/a | 2,235 (100.00 %) |
549,460 (7.58 %) |
204,051 (1.02 %) |
6,880,566 (20.70 %) |
47,352 (3.95 %) |
| 38 | common yellowthroat GCA_009764545.1 |
n/a | 10,611 (1.77 %) |
21,125 (2.21 %) |
n/a | 41.77 (100.00 %) |
1 (0.00 %) |
4,976 (100.00 %) |
422,889 (5.99 %) |
294,928 (2.71 %) |
5,928,421 (19.76 %) |
21,397 (1.91 %) |
| 39 | convict blenny (fPhoLeu1 alternate hap 2021) GCA_020510965.1 |
n/a | 5,231 (0.27 %) |
47,644 (1.48 %) |
n/a | 44.62 (99.99 %) |
144 (0.01 %) |
21,561 (99.99 %) |
2,803,873 (49.20 %) |
655,416 (2.69 %) |
7,558,550 (67.05 %) |
181,626 (10.52 %) |
| 40 | copperband butterflyfish (fCheRos1 alternate hap 2021) GCA_017976315.1 |
n/a | 13,622 (2.81 %) |
43,285 (6.93 %) |
n/a | 42.59 (100.00 %) |
1 (0.00 %) |
2,125 (100.00 %) |
1,741,373 (32.89 %) |
182,926 (2.01 %) |
3,659,106 (21.68 %) |
27,693 (1.89 %) |
| 41 | cunner (fTauAds1 alternate hap 2021) GCA_020745675.1 |
n/a | 14,861 (2.74 %) |
42,996 (6.34 %) |
n/a | 41.31 (99.99 %) |
31 (0.01 %) |
1,476 (100.00 %) |
1,373,727 (30.17 %) |
220,572 (4.38 %) |
4,176,936 (27.32 %) |
17,129 (1.04 %) |
| 42 | denticle herring GCA_900700345.2 |
n/a | 14,119 (3.95 %) |
47,988 (8.57 %) |
n/a | 43.51 (100.00 %) |
4 (0.00 %) |
1,972 (100.00 %) |
312,660 (2.77 %) |
160,575 (2.83 %) |
2,525,528 (27.70 %) |
50,830 (8.72 %) |
| 43 | Downy woodpecker (bDryPub1 alternate hap 2020) GCA_014839825.1 |
n/a | 11,732 (1.74 %) |
22,080 (2.25 %) |
n/a | 45.44 (100.00 %) |
4 (0.00 %) |
1,342 (100.00 %) |
921,959 (20.95 %) |
334,804 (3.26 %) |
5,352,773 (31.27 %) |
24,105 (1.81 %) |
| 44 | East African grey crowned-crane GCA_011004865.1 |
n/a | 11,799 (1.88 %) |
22,122 (2.30 %) |
n/a | 42.41 (100.00 %) |
4 (0.00 %) |
971 (100.00 %) |
457,930 (6.40 %) |
150,544 (0.85 %) |
6,074,490 (20.16 %) |
33,323 (3.81 %) |
| 45 | electric eel (fEleEle1 alternate hap 2020) GCA_013347915.1 |
n/a | 12,020 (3.63 %) |
38,881 (7.31 %) |
n/a | 42.77 (100.00 %) |
n/a | 2,629 (100.00 %) |
429,509 (7.66 %) |
432,260 (11.41 %) |
2,049,609 (24.32 %) |
35,597 (4.37 %) |
| 46 | epaulette shark (alternate hap sHemOce1 2021) GCA_020745765.1 |
n/a | 12,650 (0.38 %) |
20,614 (1.06 %) |
n/a | 42.75 (97.99 %) |
3,552 (2.01 %) |
4,000 (100.00 %) |
9,489,793 (70.34 %) |
976,827 (6.97 %) |
21,183,330 (44.32 %) |
42,917 (1.08 %) |
| 47 | ermine (alternate hap 2020) GCA_009829165.1 |
n/a | 13,583 (1.65 %) |
15,403 (1.46 %) |
n/a | 41.72 (100.00 %) |
n/a | 3,327 (100.00 %) |
3,139,035 (40.57 %) |
480,111 (1.29 %) |
9,106,061 (31.93 %) |
39,139 (2.25 %) |
| 48 | Eurasian nightjar (alternate hap 2021) GCA_907165095.1 |
n/a | 12,266 (1.90 %) |
22,091 (2.30 %) |
n/a | 41.97 (100.00 %) |
25 (0.00 %) |
2,502 (100.00 %) |
458,278 (5.64 %) |
212,205 (1.54 %) |
6,032,224 (21.16 %) |
21,942 (1.89 %) |
| 49 | Eurpoean golden plover (bPluApr1 alternate hap 2021) GCA_017639475.1 |
n/a | 11,836 (1.83 %) |
21,119 (2.12 %) |
n/a | 42.78 (100.00 %) |
5 (0.00 %) |
1,147 (100.00 %) |
443,887 (6.00 %) |
149,233 (0.76 %) |
6,328,128 (20.72 %) |
37,413 (3.59 %) |
| 50 | European plaice (alternate hap 2022) GCA_947347695.1 |
n/a | 14,619 (2.94 %) |
50,389 (7.92 %) |
n/a | 42.58 (100.00 %) |
3 (0.00 %) |
3,222 (100.00 %) |
430,112 (3.88 %) |
299,581 (6.89 %) |
3,182,258 (27.97 %) |
40,094 (3.66 %) |
| 51 | European robin (alternate hap 2021) GCA_903797565.2 |
n/a | 11,359 (1.98 %) |
21,437 (2.45 %) |
n/a | 41.70 (100.00 %) |
18 (0.00 %) |
3,668 (100.00 %) |
346,477 (2.88 %) |
283,542 (2.49 %) |
5,597,130 (19.71 %) |
22,977 (2.32 %) |
| 52 | Eurasian red squirrel (alternate hap 2019) GCA_902685485.1 |
n/a | 12,437 (1.51 %) |
12,702 (1.22 %) |
n/a | 40.06 (100.00 %) |
2 (0.00 %) |
10,657 (100.00 %) |
2,303,176 (35.38 %) |
353,996 (1.49 %) |
7,218,556 (31.67 %) |
24,268 (1.07 %) |
| 53 | European starfish GCA_902459445.1 |
n/a | 3,860 (0.82 %) |
23,866 (8.36 %) |
n/a | 38.77 (100.00 %) |
1 (0.00 %) |
3,969 (100.00 %) |
123,986 (1.40 %) |
146,247 (6.44 %) |
2,404,792 (37.16 %) |
14,304 (1.48 %) |
| 54 | European turtle dove (v1.2 alternate hap 2021) GCA_901699165.2 |
n/a | 11,276 (1.79 %) |
21,210 (2.15 %) |
n/a | 41.73 (100.00 %) |
n/a | 3,334 (100.00 %) |
426,785 (4.89 %) |
182,446 (0.97 %) |
6,038,491 (20.24 %) |
29,692 (2.35 %) |
| 55 | flier cichlid GCA_007364235.1 |
n/a | 17,494 (2.06 %) |
62,257 (5.73 %) |
n/a | 41.17 (99.98 %) |
13 (0.02 %) |
9,305 (99.98 %) |
1,140,986 (16.60 %) |
316,083 (2.17 %) |
6,036,560 (30.48 %) |
26,445 (1.22 %) |
| 56 | freshwater garfish (fXenCan1 alternate hap 2020) GCA_014839645.1 |
n/a | 13,745 (2.58 %) |
50,416 (6.72 %) |
n/a | 41.33 (100.00 %) |
2 (0.00 %) |
5,171 (100.00 %) |
442,646 (4.09 %) |
276,927 (5.42 %) |
3,741,267 (26.25 %) |
28,827 (2.28 %) |
| 57 | Gaboon caecilian GCA_902459495.1 |
n/a | 12,821 (0.47 %) |
30,612 (1.44 %) |
n/a | 43.23 (100.00 %) |
1 (0.00 %) |
9,651 (100.00 %) |
1,139,595 (1.64 %) |
1,170,215 (3.77 %) |
17,091,511 (52.44 %) |
235,170 (4.50 %) |
| 58 | garden warbler (bSylBor1 alternate hap 2020) GCA_014839765.1 |
n/a | 12,359 (1.95 %) |
23,228 (2.46 %) |
n/a | 41.98 (100.00 %) |
n/a | 775 (100.00 %) |
485,213 (6.08 %) |
333,505 (2.21 %) |
6,358,327 (19.87 %) |
26,594 (2.34 %) |
| 59 | gilthead seabream GCA_900880695.1 |
n/a | 13,090 (2.37 %) |
48,927 (6.41 %) |
n/a | 41.97 (100.00 %) |
2 (0.00 %) |
7,241 (100.00 %) |
422,758 (2.89 %) |
231,452 (2.54 %) |
3,818,141 (24.36 %) |
38,368 (2.40 %) |
| 60 | golden eagle (v1.4 alternate hap 2021) GCA_902153765.2 |
n/a | 9,172 (1.85 %) |
16,917 (2.12 %) |
n/a | 42.48 (100.00 %) |
2 (0.00 %) |
3,855 (100.00 %) |
377,153 (8.49 %) |
117,959 (0.78 %) |
4,418,970 (18.34 %) |
27,767 (3.57 %) |
| 61 | Goodes thornscrub tortoise GCA_007399395.1 |
n/a | 13,359 (0.95 %) |
19,347 (1.51 %) |
n/a | 44.27 (100.00 %) |
n/a | 8,736 (100.00 %) |
1,404,513 (13.79 %) |
334,726 (2.35 %) |
9,735,007 (33.33 %) |
61,680 (2.32 %) |
| 62 | great potoo (bNycGra1 alternate hap 2020) GCA_013368595.1 |
n/a | 11,630 (1.85 %) |
20,866 (2.20 %) |
n/a | 42.73 (100.00 %) |
14 (0.00 %) |
1,395 (100.00 %) |
421,187 (9.08 %) |
159,172 (0.96 %) |
5,602,689 (22.75 %) |
29,548 (2.77 %) |
| 63 | greater horseshoe bat (MPI-CBG alternate hap 2019) GCA_004115295.1 |
n/a | 14,896 (1.85 %) |
18,939 (1.59 %) |
n/a | 40.69 (100.00 %) |
2 (0.00 %) |
13,426 (100.00 %) |
2,426,330 (34.43 %) |
418,341 (1.36 %) |
8,763,234 (27.86 %) |
24,370 (1.08 %) |
| 64 | greater pipefish GCA_901709685.1 |
n/a | 10,795 (5.59 %) |
33,380 (12.07 %) |
n/a | 43.29 (100.00 %) |
2 (0.00 %) |
1,848 (100.00 %) |
140,376 (2.96 %) |
81,000 (3.32 %) |
1,318,564 (23.30 %) |
34,104 (12.82 %) |
| 65 | gyrfalcon (bFalRus1 alternate hap 2020) GCA_015220155.1 |
n/a | 6,534 (1.74 %) |
12,152 (1.97 %) |
n/a | 42.70 (100.00 %) |
n/a | 8,370 (100.00 %) |
179,674 (3.19 %) |
76,165 (0.79 %) |
2,908,228 (16.85 %) |
11,838 (2.15 %) |
| 66 | Harpy eagle (bHarHar1 alternate hap 2022) GCA_026419925.1 |
n/a | 11,838 (1.64 %) |
24,014 (2.16 %) |
n/a | 43.80 (100.00 %) |
1 (0.00 %) |
5,969 (100.00 %) |
405,109 (3.51 %) |
220,222 (6.17 %) |
4,708,177 (25.30 %) |
58,446 (5.44 %) |
| 67 | Hawaiian crow (bCorHaw1 alternate hap 2021) GCA_020740675.1 |
n/a | 7,477 (1.92 %) |
14,094 (2.40 %) |
n/a | 43.16 (100.00 %) |
n/a | 2,762 (100.00 %) |
296,732 (12.20 %) |
135,408 (4.08 %) |
3,123,655 (20.92 %) |
23,288 (3.74 %) |
| 68 | honeycomb rockfish (fSebUmb1 alternate hap 2020) GCA_015220095.1 |
n/a | 15,058 (2.50 %) |
46,340 (5.85 %) |
n/a | 40.71 (100.00 %) |
21 (0.00 %) |
2,131 (100.00 %) |
1,642,351 (37.42 %) |
389,169 (5.43 %) |
4,687,710 (35.55 %) |
34,408 (1.75 %) |
| 69 | house finch (bHaeMex1 alternate hap 2022) GCA_027406555.1 |
n/a | 12,027 (1.89 %) |
23,973 (2.49 %) |
n/a | 43.03 (100.00 %) |
1 (0.00 %) |
1,004 (100.00 %) |
385,230 (3.05 %) |
398,497 (5.70 %) |
5,772,203 (22.69 %) |
28,740 (2.98 %) |
| 70 | human (WGS:JACSEW01 2021 alternate hap) GCA_016700455.2 |
n/a | 19,667 (1.95 %) |
20,065 (1.23 %) |
n/a | 40.96 (99.60 %) |
1,172 (0.40 %) |
994 (100.00 %) |
5,086,372 (51.37 %) |
932,450 (3.67 %) |
15,152,141 (37.48 %) |
49,325 (1.10 %) |
| 71 | Humboldt's penguin (bSphHub1 alternate hap 2022) GCA_027474345.1 |
n/a | 11,806 (1.66 %) |
21,429 (1.97 %) |
n/a | 43.73 (100.00 %) |
1 (0.00 %) |
4,343 (100.00 %) |
508,803 (10.25 %) |
162,918 (5.44 %) |
6,029,969 (24.67 %) |
27,953 (3.83 %) |
| 72 | Indian glassy fish GCA_900651595.1 |
n/a | 14,412 (3.70 %) |
41,944 (8.58 %) |
n/a | 42.27 (99.58 %) |
230 (0.42 %) |
2,242 (100.00 %) |
304,774 (2.86 %) |
140,555 (2.80 %) |
2,689,154 (24.08 %) |
15,419 (1.38 %) |
| 73 | jewelled blenny GCA_902148835.1 |
n/a | 15,945 (2.17 %) |
101,825 (8.93 %) |
n/a | 44.49 (99.63 %) |
9 (0.37 %) |
4,516 (100.00 %) |
744,228 (4.25 %) |
519,896 (5.73 %) |
4,677,160 (28.52 %) |
138,484 (9.55 %) |
| 74 | kagu (bRhyJub1 alternate hap 2023) GCA_027595965.1 |
n/a | 8,732 (1.74 %) |
16,473 (2.17 %) |
n/a | 45.10 (100.00 %) |
1 (0.00 %) |
2,819 (100.00 %) |
314,902 (10.49 %) |
133,061 (10.84 %) |
3,656,435 (25.68 %) |
32,592 (5.25 %) |
| 75 | Kakapo GCA_004011185.1 |
n/a | 3,256 (1.65 %) |
6,220 (1.98 %) |
n/a | 41.74 (100.00 %) |
11 (0.00 %) |
3,728 (100.00 %) |
127,817 (7.83 %) |
53,447 (1.21 %) |
1,502,789 (18.09 %) |
5,487 (1.71 %) |
| 76 | Korean giant-fin mudskipper GCA_009829135.1 |
n/a | 13,470 (2.34 %) |
42,799 (5.73 %) |
n/a | 40.16 (100.00 %) |
1 (0.00 %) |
2,799 (100.00 %) |
394,414 (4.41 %) |
509,973 (7.17 %) |
4,581,968 (38.91 %) |
34,522 (2.54 %) |
| 77 | lammergeier (bGypBar2 alternate hap 2023) GCA_028017155.1 |
n/a | 10,584 (1.75 %) |
19,112 (2.09 %) |
n/a | 43.19 (100.00 %) |
n/a | 2,892 (100.00 %) |
363,564 (3.53 %) |
235,220 (7.22 %) |
5,072,834 (23.83 %) |
24,909 (2.64 %) |
| 78 | lance-tailed manakin GCA_009829205.1 |
n/a | 12,282 (1.85 %) |
23,867 (2.36 %) |
n/a | 42.20 (100.00 %) |
n/a | 4,269 (100.00 %) |
472,384 (7.01 %) |
237,680 (1.65 %) |
6,121,661 (19.48 %) |
25,589 (2.05 %) |
| 79 | lanner falcon (bFalBia1 alternate hap 2022) GCA_023634305.1 |
n/a | 12,458 (1.70 %) |
22,259 (2.05 %) |
n/a | 43.23 (100.00 %) |
n/a | 3,090 (100.00 %) |
413,301 (3.46 %) |
189,449 (5.28 %) |
5,962,597 (22.07 %) |
31,611 (2.72 %) |
| 80 | largescale foureyes (fAnaAna1 alternate hap 2020) GCA_014839705.1 |
n/a | 8,132 (2.11 %) |
25,878 (4.67 %) |
n/a | 38.55 (100.00 %) |
n/a | 5,088 (100.00 %) |
260,789 (2.73 %) |
158,564 (2.12 %) |
3,023,128 (27.39 %) |
9,678 (1.02 %) |
| 81 | leatherback sea turtle GCA_009762595.1 |
n/a | 10,857 (1.01 %) |
15,585 (1.46 %) |
n/a | 43.54 (100.00 %) |
n/a | 8,982 (100.00 %) |
1,090,219 (15.03 %) |
206,192 (1.19 %) |
7,154,939 (33.03 %) |
25,155 (1.42 %) |
| 82 | lesser kestrel (alternate hap 2021) GCA_017639645.1 |
n/a | 12,578 (1.83 %) |
22,257 (2.16 %) |
n/a | 42.51 (98.97 %) |
258 (1.03 %) |
551 (100.00 %) |
431,717 (3.61 %) |
201,876 (1.38 %) |
6,620,060 (19.16 %) |
27,552 (2.26 %) |
| 83 | lesser rhea (bPtePen1 alternate hap 2023) GCA_028389885.1 |
n/a | 10,465 (1.71 %) |
19,083 (2.16 %) |
n/a | 42.10 (100.00 %) |
n/a | 910 (100.00 %) |
520,125 (6.78 %) |
251,547 (4.21 %) |
5,321,207 (21.53 %) |
34,698 (5.69 %) |
| 84 | lesser salmon catfish (fNeoGra1 alternate hap 2023) GCA_027579805.1 |
n/a | 15,487 (0.88 %) |
85,135 (3.39 %) |
n/a | 42.43 (100.00 %) |
3 (0.00 %) |
6,593 (100.00 %) |
5,572,163 (49.59 %) |
1,052,072 (6.02 %) |
7,246,646 (62.69 %) |
157,768 (4.38 %) |
| 85 | lesser Egyptian jerboa (alternate hap 2021) GCA_020740715.1 |
n/a | 17,777 (1.27 %) |
19,232 (1.28 %) |
n/a | 42.13 (92.75 %) |
2,875 (7.25 %) |
508 (100.00 %) |
6,476,967 (33.93 %) |
999,133 (2.78 %) |
11,809,834 (40.52 %) |
29,872 (0.82 %) |
| 86 | live sharksucker GCA_900963505.1 |
n/a | 14,632 (3.51 %) |
40,441 (7.51 %) |
n/a | 41.42 (99.96 %) |
19 (0.04 %) |
1,405 (100.00 %) |
435,742 (3.57 %) |
139,003 (1.51 %) |
3,161,165 (22.06 %) |
16,302 (1.34 %) |
| 87 | long-tailed hermit (PSU5 alternate hap 2022) GCA_023637925.1 |
n/a | 12,264 (2.01 %) |
20,528 (2.37 %) |
n/a | 40.99 (100.00 %) |
n/a | 230 (100.00 %) |
498,393 (5.07 %) |
266,700 (1.49 %) |
6,131,743 (20.45 %) |
15,809 (1.43 %) |
| 88 | longspined bullhead (fTauBub2.1 alternate hap 2021) GCA_910589325.1 |
n/a | 15,137 (3.09 %) |
52,499 (7.75 %) |
n/a | 42.22 (100.00 %) |
n/a | 1,778 (100.00 %) |
448,166 (4.67 %) |
416,181 (8.95 %) |
3,288,388 (27.99 %) |
55,747 (4.41 %) |
| 89 | lumpfish GCA_009769515.1 |
n/a | 12,848 (3.32 %) |
43,711 (8.09 %) |
n/a | 42.84 (100.00 %) |
n/a | 1,866 (100.00 %) |
407,698 (6.03 %) |
360,501 (11.29 %) |
2,456,041 (28.07 %) |
45,916 (5.21 %) |
| 90 | maguari stork (bCicMag1 alternate hap 2021) GCA_017639665.1 |
n/a | 10,658 (1.74 %) |
18,941 (1.98 %) |
n/a | 42.26 (100.00 %) |
5 (0.00 %) |
4,278 (100.00 %) |
326,479 (4.02 %) |
141,715 (0.74 %) |
5,600,372 (19.59 %) |
27,330 (3.35 %) |
| 91 | meadow viper (alternate hap 2022) GCA_947247025.1 |
n/a | 10,549 (1.13 %) |
20,171 (2.08 %) |
n/a | 41.02 (100.00 %) |
12 (0.00 %) |
9,587 (100.00 %) |
889,533 (7.84 %) |
565,831 (6.37 %) |
5,968,624 (41.74 %) |
73,632 (3.80 %) |
| 92 | milkfish GCA_902362175.1 |
n/a | 16,565 (3.38 %) |
42,094 (6.75 %) |
n/a | 41.51 (100.00 %) |
3 (0.00 %) |
1,937 (100.00 %) |
930,392 (8.11 %) |
708,375 (9.04 %) |
3,612,575 (26.46 %) |
21,531 (1.27 %) |
| 93 | monito del monte (mDroGli1 alternate hap 2021) GCA_019395325.1 |
n/a | 16,419 (0.77 %) |
17,219 (0.89 %) |
n/a | 39.03 (100.00 %) |
33 (0.00 %) |
9,959 (100.00 %) |
6,332,360 (29.69 %) |
1,065,454 (2.09 %) |
17,908,986 (42.25 %) |
13,856 (0.35 %) |
| 94 | mute swan (bCygOlo1 v2 alternate hap 2021) GCA_009769485.2 |
n/a | 10,145 (1.98 %) |
18,617 (2.30 %) |
n/a | 42.21 (100.00 %) |
14 (0.00 %) |
5,640 (100.00 %) |
533,330 (9.11 %) |
213,518 (1.29 %) |
4,813,886 (20.16 %) |
25,667 (3.86 %) |
| 95 | Nelson's sparrow (bAmmNel1 alternate hap 2023) GCA_027579665.1 |
n/a | 11,687 (1.78 %) |
24,169 (2.43 %) |
n/a | 43.32 (100.00 %) |
n/a | 2,834 (100.00 %) |
414,780 (3.26 %) |
491,012 (10.03 %) |
5,570,475 (26.24 %) |
29,485 (4.55 %) |
| 96 | New Caledonian crow GCA_009651025.1 |
n/a | 11,097 (1.99 %) |
20,436 (2.45 %) |
n/a | 42.67 (100.00 %) |
n/a | 894 (100.00 %) |
377,050 (6.03 %) |
178,064 (1.53 %) |
5,305,126 (19.49 %) |
26,107 (2.52 %) |
| 97 | New Zealand spotty GCA_009762545.1 |
n/a | 13,566 (2.17 %) |
40,774 (5.21 %) |
n/a | 40.81 (100.00 %) |
n/a | 3,286 (100.00 %) |
472,659 (4.46 %) |
348,429 (5.17 %) |
4,169,213 (33.57 %) |
16,368 (0.83 %) |
| 98 | northern goshawk (bAccGen1 v1 alternate hap 2022) GCA_929447715.1 |
n/a | 12,115 (1.73 %) |
22,764 (2.15 %) |
n/a | 43.51 (100.00 %) |
2 (0.00 %) |
4,484 (100.00 %) |
417,395 (3.68 %) |
231,908 (7.24 %) |
5,424,533 (24.05 %) |
35,691 (4.26 %) |
| 99 | northern pike GCA_011004835.1 |
n/a | 11,782 (2.41 %) |
40,748 (5.68 %) |
n/a | 42.32 (99.93 %) |
11 (0.07 %) |
3,813 (100.00 %) |
700,818 (30.15 %) |
372,729 (7.71 %) |
3,058,655 (31.76 %) |
29,687 (2.57 %) |
| 100 | Norway rat BN7 haplotype GCA_015244455.1 |
n/a | 3,096 (1.64 %) |
2,450 (1.02 %) |
n/a | 41.23 (100.00 %) |
6 (0.00 %) |
3,156 (100.00 %) |
517,347 (50.76 %) |
157,701 (3.90 %) |
1,502,752 (34.14 %) |
1,806 (0.40 %) |
| 101 | orbiculate cardinalfish GCA_902148825.1 |
n/a | 14,018 (1.51 %) |
45,251 (3.61 %) |
n/a | 37.73 (99.94 %) |
142 (0.06 %) |
7,038 (99.94 %) |
1,041,393 (5.09 %) |
744,623 (6.94 %) |
6,250,631 (45.53 %) |
22,522 (0.77 %) |
| 102 | pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020) GCA_004115245.2 |
n/a | 18,116 (1.63 %) |
23,608 (1.65 %) |
n/a | 42.48 (100.00 %) |
38 (0.00 %) |
10,895 (100.00 %) |
3,002,448 (29.46 %) |
375,226 (0.79 %) |
11,824,034 (29.65 %) |
67,718 (4.23 %) |
| 103 | peladilla (fAplTae1 alternate hap 2021) GCA_017639685.1 |
n/a | 16,729 (3.56 %) |
56,451 (8.61 %) |
n/a | 45.00 (100.00 %) |
11 (0.00 %) |
5,701 (100.00 %) |
1,153,359 (18.94 %) |
829,887 (14.54 %) |
2,793,018 (28.79 %) |
49,469 (4.32 %) |
| 104 | peregrine falcon (bFalPer1 alternate hap 2022) GCA_023634185.1 |
n/a | 12,529 (1.75 %) |
24,654 (2.25 %) |
n/a | 42.72 (100.00 %) |
n/a | 2,745 (100.00 %) |
517,204 (7.95 %) |
218,606 (4.15 %) |
6,216,533 (21.16 %) |
26,313 (2.41 %) |
| 105 | Philippine flying lemur (mCynVol1 alternate hap 2022) GCA_027409165.1 |
n/a | 18,794 (1.72 %) |
21,421 (1.40 %) |
n/a | 40.18 (100.00 %) |
n/a | 1,750 (100.00 %) |
4,001,442 (39.37 %) |
547,894 (2.75 %) |
13,870,563 (34.33 %) |
40,162 (1.31 %) |
| 106 | pinecone soldierfish GCA_902148815.1 |
n/a | 15,563 (2.38 %) |
54,264 (6.19 %) |
n/a | 41.81 (100.00 %) |
6 (0.00 %) |
2,193 (100.00 %) |
1,040,418 (5.81 %) |
623,499 (4.08 %) |
4,888,400 (27.89 %) |
40,331 (2.02 %) |
| 107 | platypus (alternate hap Pmale09 2020) GCA_004115175.2 |
n/a | 13,244 (1.26 %) |
19,241 (1.68 %) |
n/a | 46.27 (100.00 %) |
25 (0.00 %) |
5,868 (100.00 %) |
4,420,884 (51.59 %) |
513,006 (3.13 %) |
7,749,797 (49.18 %) |
81,538 (8.24 %) |
| 108 | plumbeous ibis (bTheCae1 alternate hap 2021) GCA_020745805.1 |
n/a | 11,774 (1.90 %) |
20,857 (2.20 %) |
n/a | 42.59 (100.00 %) |
4 (0.00 %) |
749 (100.00 %) |
356,053 (4.37 %) |
157,695 (0.93 %) |
5,995,637 (19.60 %) |
30,478 (4.03 %) |
| 109 | prehistoric monster fish GCA_902500245.1 |
n/a | 10,944 (0.64 %) |
59,123 (2.21 %) |
n/a | 41.96 (100.00 %) |
8 (0.00 %) |
19,587 (100.00 %) |
947,336 (2.69 %) |
554,284 (3.27 %) |
7,314,941 (58.56 %) |
125,285 (5.42 %) |
| 110 | razorbill GCA_008658355.1 |
n/a | 12,937 (1.75 %) |
24,253 (2.09 %) |
n/a | 42.61 (100.00 %) |
n/a | 3,309 (100.00 %) |
562,549 (7.14 %) |
210,852 (1.04 %) |
7,264,995 (20.26 %) |
40,926 (2.91 %) |
| 111 | red-crested turaco GCA_009764505.1 |
n/a | 11,247 (1.70 %) |
23,705 (2.27 %) |
n/a | 42.64 (100.00 %) |
n/a | 3,476 (100.00 %) |
482,817 (8.51 %) |
153,169 (0.81 %) |
5,919,109 (21.87 %) |
39,766 (3.41 %) |
| 112 | red-bellied piranha (fPygNat1 alternate hap 2020) GCA_015220065.1 |
n/a | 4,539 (2.01 %) |
14,061 (4.35 %) |
n/a | 40.48 (100.00 %) |
n/a | 1,751 (100.00 %) |
759,605 (49.59 %) |
161,693 (7.99 %) |
1,684,737 (29.93 %) |
7,525 (1.31 %) |
| 113 | red-legged seriema GCA_009819485.1 |
n/a | 10,131 (1.78 %) |
19,775 (2.21 %) |
n/a | 42.28 (100.00 %) |
1 (0.00 %) |
2,840 (100.00 %) |
366,591 (6.01 %) |
117,928 (0.90 %) |
5,340,048 (18.90 %) |
26,293 (2.86 %) |
| 114 | Red-fronted tinkerbird (bPogPus1 alternate hap 2020) GCA_015220175.1 |
n/a | 11,434 (1.65 %) |
21,710 (2.11 %) |
n/a | 46.12 (100.00 %) |
12 (0.00 %) |
2,748 (100.00 %) |
859,899 (15.52 %) |
319,622 (3.85 %) |
5,367,970 (34.63 %) |
23,381 (1.81 %) |
| 115 | reedfish GCA_900700845.2 |
n/a | 9,950 (0.37 %) |
31,611 (1.22 %) |
n/a | 39.44 (100.00 %) |
5 (0.00 %) |
38,598 (100.00 %) |
1,300,565 (2.57 %) |
685,834 (2.21 %) |
14,691,576 (45.66 %) |
63,365 (1.11 %) |
| 116 | rifleman (bAcaChl1 alternate hap 2021) GCA_016880875.1 |
n/a | 9,867 (1.89 %) |
19,635 (2.52 %) |
n/a | 42.54 (100.00 %) |
20 (0.00 %) |
2,879 (100.00 %) |
394,769 (10.00 %) |
186,556 (1.91 %) |
4,428,687 (19.09 %) |
15,730 (1.88 %) |
| 117 | rock gunnel (alternate hap 2021) GCA_910591705.2 |
n/a | 15,291 (3.29 %) |
45,865 (7.56 %) |
n/a | 42.26 (100.00 %) |
1 (0.00 %) |
2,165 (100.00 %) |
1,131,154 (25.69 %) |
269,583 (5.08 %) |
3,371,712 (24.64 %) |
36,810 (2.68 %) |
| 118 | rock ptarmigan (bLagMut1 alternate hap 2022) GCA_023344045.1 |
n/a | 12,090 (2.36 %) |
21,910 (2.57 %) |
n/a | 41.56 (100.00 %) |
13 (0.00 %) |
3,212 (100.00 %) |
585,577 (10.45 %) |
202,342 (1.61 %) |
5,390,780 (20.38 %) |
19,210 (2.23 %) |
| 119 | Saker falcon (bFalChe1 alternate hap 2022) GCA_023634115.1 |
n/a | 12,258 (1.66 %) |
25,579 (2.30 %) |
n/a | 43.39 (100.00 %) |
2 (0.00 %) |
4,162 (100.00 %) |
506,343 (6.77 %) |
182,589 (7.22 %) |
5,435,776 (23.60 %) |
29,420 (2.47 %) |
| 120 | saltmarsh sparrow (bAmmCau1 alternate hap 2023) GCA_027887135.1 |
n/a | 12,826 (1.74 %) |
26,019 (2.35 %) |
n/a | 43.09 (100.00 %) |
n/a | 3,054 (100.00 %) |
482,850 (3.37 %) |
523,437 (10.15 %) |
6,386,315 (26.20 %) |
32,734 (4.25 %) |
| 121 | sand lizard GCA_009819545.1 |
n/a | 14,226 (1.28 %) |
25,396 (2.33 %) |
n/a | 43.80 (100.00 %) |
2 (0.00 %) |
12,662 (100.00 %) |
1,001,433 (5.27 %) |
445,157 (1.79 %) |
7,227,826 (34.26 %) |
80,300 (2.76 %) |
| 122 | sea lamprey GCA_010993595.1 |
n/a | 6,180 (0.71 %) |
31,191 (4.14 %) |
n/a | 48.30 (100.00 %) |
11 (0.00 %) |
4,064 (100.00 %) |
1,494,745 (38.42 %) |
891,392 (20.02 %) |
4,259,383 (49.70 %) |
147,499 (35.87 %) |
| 123 | Siamese fighting fish GCA_900651605.1 |
n/a | 14,510 (4.12 %) |
60,058 (10.77 %) |
n/a | 45.51 (100.00 %) |
2 (0.00 %) |
3,705 (100.00 %) |
249,671 (3.68 %) |
182,366 (4.87 %) |
1,939,533 (22.55 %) |
72,474 (13.55 %) |
| 124 | smalltooth sawfish GCA_009764485.1 |
n/a | 9,086 (0.58 %) |
20,468 (1.57 %) |
n/a | 42.65 (100.00 %) |
n/a | 10,892 (100.00 %) |
315,695 (1.23 %) |
320,148 (1.73 %) |
8,305,059 (38.33 %) |
37,147 (1.43 %) |
| 125 | South Island takahe (alternate hap 2021) GCA_020801775.1 |
n/a | 12,655 (1.70 %) |
n/a | n/a | 43.63 (99.16 %) |
238 (0.84 %) |
178 (100.00 %) |
554,912 (9.42 %) |
230,808 (4.34 %) |
6,406,358 (24.83 %) |
22,941 (1.98 %) |
| 126 | southern bluefin tuna (alternate hap 2021) GCA_910596085.1 |
n/a | 15,727 (2.61 %) |
43,177 (5.74 %) |
n/a | 39.72 (100.00 %) |
n/a | 895 (100.00 %) |
1,590,386 (33.53 %) |
246,800 (2.86 %) |
5,173,834 (26.85 %) |
14,473 (0.87 %) |
| 127 | southern tamandua (mTamTet1 alternate hap 2022) GCA_023853755.1 |
n/a | 20,179 (1.21 %) |
24,249 (1.19 %) |
n/a | 39.54 (100.00 %) |
4 (0.00 %) |
7,866 (100.00 %) |
3,953,031 (35.88 %) |
531,111 (1.14 %) |
16,354,874 (39.96 %) |
59,907 (1.35 %) |
| 128 | southern two-toed sloth (mChoDid1 alternate hap 2020) GCA_015220265.1 |
n/a | 22,897 (1.23 %) |
27,007 (1.18 %) |
n/a | 39.87 (100.00 %) |
70 (0.00 %) |
12,050 (100.00 %) |
4,502,020 (38.27 %) |
576,759 (1.02 %) |
17,143,050 (40.65 %) |
51,339 (1.15 %) |
| 129 | stone loach (alternate hap 2022) GCA_947034905.1 |
n/a | 16,177 (4.18 %) |
40,160 (7.35 %) |
n/a | 39.58 (100.00 %) |
n/a | 2,237 (100.00 %) |
1,208,781 (38.02 %) |
121,854 (7.96 %) |
2,956,942 (32.61 %) |
27,787 (3.58 %) |
| 130 | striped catfish (fPanHyp1 alternate hap 2022) GCA_027382375.1 |
n/a | 15,871 (2.85 %) |
42,287 (5.51 %) |
n/a | 38.96 (100.00 %) |
1 (0.00 %) |
3,274 (100.00 %) |
1,826,752 (37.53 %) |
592,022 (6.69 %) |
4,899,884 (32.33 %) |
17,357 (1.25 %) |
| 131 | Suruca trogon (bTroSur1 alternate hap 2021) GCA_020746095.1 |
n/a | 11,628 (1.91 %) |
21,635 (2.31 %) |
n/a | 42.86 (100.00 %) |
17 (0.00 %) |
1,535 (100.00 %) |
421,231 (6.57 %) |
146,070 (1.11 %) |
5,727,350 (21.91 %) |
37,752 (3.68 %) |
| 132 | Swainson's thrush (bCatUst1 v2 alternate hap 2020) GCA_009819505.2 |
n/a | 13,403 (1.85 %) |
27,669 (2.52 %) |
n/a | 42.86 (100.00 %) |
13 (0.00 %) |
3,601 (100.00 %) |
704,976 (13.16 %) |
649,859 (4.89 %) |
6,740,713 (22.65 %) |
49,076 (3.54 %) |
| 133 | swamp sparrow (bMelGeo1 alternate hap 2023) GCA_028019105.1 |
n/a | 12,160 (1.83 %) |
24,622 (2.46 %) |
n/a | 43.37 (100.00 %) |
n/a | 862 (100.00 %) |
383,634 (3.06 %) |
527,550 (8.40 %) |
5,916,654 (24.97 %) |
31,261 (3.21 %) |
| 134 | tawny frogmouth (bPodStr1 alternate hap 2023) GCA_028020675.1 |
n/a | 11,432 (1.95 %) |
20,528 (2.37 %) |
n/a | 42.31 (100.00 %) |
1 (0.00 %) |
911 (100.00 %) |
470,125 (9.51 %) |
140,846 (3.57 %) |
5,002,695 (22.08 %) |
22,424 (2.33 %) |
| 135 | thorny skate GCA_010909745.1 |
n/a | 5,885 (0.35 %) |
24,457 (1.45 %) |
n/a | 44.61 (100.00 %) |
3 (0.00 %) |
21,995 (100.00 %) |
553,415 (2.65 %) |
761,469 (4.53 %) |
6,043,769 (57.75 %) |
159,552 (5.54 %) |
| 136 | tiny Cayenne caecilian GCA_901765105.1 |
n/a | 12,197 (0.36 %) |
33,747 (1.15 %) |
n/a | 43.95 (100.00 %) |
1 (0.00 %) |
23,871 (100.00 %) |
1,453,442 (1.57 %) |
1,309,062 (3.23 %) |
17,953,416 (52.19 %) |
326,452 (3.86 %) |
| 137 | torafugu GCA_901000745.3 |
n/a | 13,635 (4.82 %) |
48,723 (11.83 %) |
n/a | 45.60 (99.82 %) |
38 (0.18 %) |
2,012 (100.00 %) |
249,793 (9.32 %) |
151,193 (4.49 %) |
1,577,144 (20.25 %) |
46,936 (9.72 %) |
| 138 | tufted duck GCA_009819845.1 |
n/a | 12,117 (2.03 %) |
21,464 (2.36 %) |
n/a | 41.71 (100.00 %) |
1 (0.00 %) |
780 (100.00 %) |
732,317 (7.82 %) |
353,660 (1.57 %) |
6,119,549 (21.70 %) |
27,920 (2.56 %) |
| 139 | two-lined caecilian GCA_901001175.1 |
n/a | 13,456 (0.33 %) |
47,486 (1.34 %) |
n/a | 44.33 (100.00 %) |
2 (0.00 %) |
27,233 (100.00 %) |
1,968,437 (1.91 %) |
1,716,136 (3.97 %) |
25,847,315 (43.76 %) |
523,234 (6.59 %) |
| 140 | vaquita (alternate hap mPhoSin1 2019) GCA_008692045.1 |
n/a | 9,367 (1.66 %) |
11,297 (1.30 %) |
n/a | 41.50 (100.00 %) |
1 (0.00 %) |
9,470 (100.00 %) |
1,708,360 (43.81 %) |
267,584 (1.67 %) |
5,373,410 (33.52 %) |
29,783 (1.94 %) |
| 141 | warty frogfish (fAntMac1 alternate hap 2020) GCA_013347815.1 |
n/a | 14,197 (3.33 %) |
44,782 (7.70 %) |
n/a | 41.82 (100.00 %) |
n/a | 2,294 (100.00 %) |
396,279 (4.74 %) |
275,154 (5.76 %) |
2,933,132 (29.41 %) |
35,104 (4.08 %) |
| 142 | Western terrestrial garter snake GCA_009769695.1 |
n/a | 13,101 (0.94 %) |
24,980 (1.75 %) |
n/a | 41.02 (99.93 %) |
19 (0.07 %) |
13,642 (99.93 %) |
1,410,212 (7.70 %) |
1,080,385 (4.56 %) |
9,112,844 (43.96 %) |
91,606 (2.53 %) |
| 143 | whiskered treeswift (bHemCom1 alternate hap 2021) GCA_020745695.1 |
n/a | 11,632 (1.83 %) |
20,659 (2.18 %) |
n/a | 42.16 (100.00 %) |
1 (0.00 %) |
2,405 (100.00 %) |
553,633 (11.80 %) |
147,999 (0.81 %) |
5,825,472 (20.55 %) |
20,481 (1.61 %) |
| 144 | white-tailed eagle (bHalAlb1.1 alternate hap 2022) GCA_947461935.1 |
n/a | 7,755 (1.71 %) |
16,331 (2.39 %) |
n/a | 43.66 (100.00 %) |
n/a | 4,971 (100.00 %) |
304,566 (13.21 %) |
116,307 (6.64 %) |
3,407,853 (22.91 %) |
34,573 (4.56 %) |
| 145 | white-toothed pygmy shrew (mSunEtr1 alternate hap 2022) GCA_024140225.1 |
n/a | 12,198 (1.10 %) |
18,494 (1.29 %) |
n/a | 39.87 (100.00 %) |
26 (0.00 %) |
14,841 (100.00 %) |
1,725,021 (17.81 %) |
802,415 (4.26 %) |
8,321,474 (45.72 %) |
15,669 (0.79 %) |
| 146 | yellow-throated sandgrouse GCA_009769505.1 |
n/a | 11,788 (1.85 %) |
23,306 (2.45 %) |
n/a | 42.31 (100.00 %) |
n/a | 1,958 (100.00 %) |
467,960 (6.96 %) |
182,645 (0.99 %) |
6,050,545 (20.78 %) |
26,357 (2.20 %) |
| 147 | yellowfin seabream (v.2019 alternate hap 2020) GCA_904848175.1 |
n/a | 814 (1.87 %) |
3,814 (6.84 %) |
n/a | 42.36 (99.98 %) |
80 (0.02 %) |
349 (100.00 %) |
38,000 (5.03 %) |
29,516 (7.35 %) |
232,988 (20.37 %) |
2,289 (2.07 %) |
| 148 | yellowfin tuna (alternate hap 2021) GCA_914744365.1 |
n/a | 15,959 (2.63 %) |
43,025 (5.73 %) |
n/a | 39.71 (100.00 %) |
n/a | 640 (100.00 %) |
1,427,221 (28.44 %) |
257,108 (3.15 %) |
5,197,531 (26.91 %) |
13,909 (0.83 %) |
| 149 | zebra finch (alternate hap Blue55 v1 2020) GCA_009859025.1 |
n/a | 10,734 (1.84 %) |
19,978 (2.21 %) |
n/a | 41.07 (99.99 %) |
16 (0.01 %) |
4,677 (100.00 %) |
436,071 (7.44 %) |
217,580 (1.43 %) |
5,800,691 (19.24 %) |
19,512 (1.90 %) |
| 150 | zebra finch (Black17 v1.4 alternate hap 2021) GCA_003957525.2 |
n/a | 11,213 (2.01 %) |
21,533 (2.54 %) |
n/a | 41.92 (100.00 %) |
10 (0.00 %) |
1,646 (100.00 %) |
470,860 (9.54 %) |
387,943 (3.32 %) |
5,428,128 (20.68 %) |
23,838 (2.47 %) |
| 151 | zebrafish (fDanRer4 alternate hap 2022) GCA_944039255.1 |
n/a | 6,365 (2.41 %) |
16,467 (3.26 %) |
n/a | 36.72 (100.00 %) |
n/a | 4,719 (100.00 %) |
1,317,027 (59.43 %) |
323,062 (10.58 %) |
3,014,570 (45.46 %) |
14,563 (1.98 %) |
| 152 | zig-zag eel GCA_900700395.1 |
n/a | 1,204 (2.88 %) |
4,065 (7.13 %) |
n/a | 41.24 (99.99 %) |
n/a | 1,437 (100.00 %) |
26,319 (3.19 %) |
14,209 (3.21 %) |
211,357 (18.05 %) |
1,253 (1.49 %) |
| TOTALS: | total assembly count 152 | |||||||||||
| Alternate sets of VGP assemblies | NCBI Refseq | ||||
|---|---|---|---|---|---|
| Index pages: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Assembly statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |
| Track statistics: | primary assembly | alternate/haplotype | trio mat/pat | legacy/superseded | other NCBI Refseq assemblies |