VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

VGP logo

This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt 3,527 1,024,138,499 0 0 18.52
2 Aeolian wall lizard (La Canna islet rPodRaf1 alternate hap 2022) Podarcis raffonei GCA_027172095.1_rPodRaf1.alt 4,811 182,031,793 3 260 27.46
3 African savanna elephant (hap2 mLoxAfr1 2023) Loxodonta africana GCA_030014295.1_mLoxAfr1.hap2 880 3,540,893,228 231 3,688,568 49.48
4 American flamingo Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt 3,529 1,167,509,893 0 0 20.15
5 American pika (hap2 mOchPri1 2023) Ochotona princeps GCA_030435715.1_mOchPri1.hap2 6,117 2,534,779,560 375 74,504 45.99
6 American shad (fAloSap1 alternate hap 2021) Alosa sapidissima GCA_018492705.1_fAloSap1.alt 5,410 852,425,339 1 20 38.65
7 Anna's hummingbird Calypte anna GCA_003957575.1_bCalAnn1_v1.h 3,803 952,083,371 6 2,998 20.33
8 Antarctic lanternfish (alternate hap 2023) Electrona antarctica GCA_951214905.1_fEleAnt2.1_alternate_haplotype 11,436 1,301,265,211 0 0 47.62
9 Aristotle's catfish (alternate hap 2022) Silurus aristotelis GCA_946807865.1_fSilAri3.1_alternate_haplotype 7,617 713,076,206 0 0 40.74
10 Asian bonytongue Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
11 Asiatic elephant (mEleMax1 alternate hap 2022) Elephas maximus indicus GCA_024166345.1_mEleMax1_alternate_haplotype 6,361 2,952,809,375 0 0 47.31
12 Atlantic cod Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
13 Atlantic halibut Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
14 Atlantic horse mackerel (alternate hap 2021) Trachurus trachurus GCA_905171655.2_fTraTra1.2_alternate_haplotype 1,049 797,027,743 74 4,927 32.73
15 Atlantic stingray (hap2 2023) Hypanus sabinus GCA_030144785.1_sHypSab1.hap2 1,412 3,635,158,545 1,633 326,600 50.34
16 Australian echidna (mTacAcu1 alternate hap 2020) Tachyglossus aculeatus GCA_015852515.1_mTacAcu1.alt 3,482 1,885,160,879 26 440,103 56.70
17 banded archerfish (fToxJac2 alternate hap 2021) Toxotes jaculatrix GCA_017976295.1_fToxJac2.alt 2,393 594,660,453 2 26 26.52
18 barbel (alternate hap 2022) Barbus barbus GCA_936446605.1_fBarBab1.1_alternate_haplotype 8,034 1,319,370,800 1 200 52.21
19 Barn swallow (bHirRus1 v3 alternate hap 2021) Hirundo rustica GCA_015227815.3_bHirRus1.alt.v3 2,476 936,032,861 6 1,226 20.47
20 black rhinoceros (alternate hap 2021) Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon 1,199 3,044,793,931 178 903,692 40.41
21 black-capped chickadee (hap2 2023) Poecile atricapillus GCA_030490855.1_bPoeAtr1.hap2 157 987,998,379 240 590,213 23.49
22 blackcap Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt 3,566 991,486,332 2 600 19.69
23 Blainville's beaked whale (mMesDen1 alternate hap 2022) Mesoplodon densirostris GCA_025094165.1_mMesDen1_alternate_haplotype 5,197 2,376,281,363 1 33 41.16
24 Blue whale (JJ_BM4_2016_0621 v2 alternate hap 2020) Balaenoptera musculus GCA_008658375.2_mBalMus1.alt.v2 10,996 1,835,388,607 3 90 43.53
25 blue-and-yellow macaw (hap2 2023) Ara ararauna GCA_028858555.1_bAraAra1.hap2 274 1,302,242,811 130 1,106,509 28.73
26 blunt-snouted clingfish Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
27 Boeseman's rainbowfish (fMelBoe1 alternate hap 2021) Melanotaenia boesemani GCA_017639755.1_fMelBoe1.alt 3,194 764,404,102 45 60,336 28.42
28 bonti-bonti (fTelBon1 alternate hap 2022) Telmatherina bonti GCA_933228925.1_fTelBon1.1_alternate_haplotype 4,619 781,234,592 0 0 38.85
29 Brauer's lanternfish (alternate hap 2023) Gymnoscopelus braueri GCA_963281105.1_fGymBra2.1_alternate_haplotype 10,794 1,279,160,753 5 1,000 46.07
30 butterfish (fScaArg1 alternate hap 2021) Scatophagus argus GCA_020382915.1_fScaArg1.alt 1,592 563,244,951 4 52 21.38
31 California sea lion (mZalCal1 alternate hap 2020) Zalophus californianus GCA_009762295.2_mZalCal1.alt.v2 3,096 1,970,935,876 0 0 42.95
32 Canada lynx (LIC74 v2 alternate hap 2020) Lynx canadensis GCA_007474575.2_mLynCan4.alt.v2 15,041 1,416,309,019 5 743 43.55
33 carmine bee-eater Merops nubicus GCA_009819585.1_bMerNub1.alt 3,296 1,122,486,764 0 0 21.54
34 channel bull blenny Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
35 chicken (Cobb bGalGal5 alternate hap 2022) Gallus gallus GCA_027408205.1_bGalGal5.alt 2,259 911,865,540 4 92 21.83
36 chicken (matHap) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b 214 1,053,332,251 463 3,383,918 21.35
37 chicken (patHap) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w 255 953,182,234 254 3,312,879 20.28
38 chicken (Ross bGalGal4 alternate hap 2022) Gallus gallus GCA_027408255.1_bGalGal4.alt 2,683 885,772,923 1 13 21.48
39 Chinese pangolin (hap2 mManPen7 2023) Manis pentadactyla GCA_030020945.1_mManPen7.hap2 700 2,869,287,698 190 14,873,332 39.52
40 chub mackerel (fScoJap1 alternate hap 2022) Scomber japonicus GCA_027409835.1_fScoJap1.alt 2,162 783,090,595 1 39 30.75
41 climbing perch Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
42 clouded leopard (mNeoNeb1 alternate hap 2023) Neofelis nebulosa GCA_028018655.1_mNeoNeb1.alt 10,377 1,980,212,524 0 0 33.41
43 common brushtail (alternate hap 2020) Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt 12,133 2,591,928,569 313 24,688 40.15
44 common cuckoo (bCucCan1 alternate hap 2021) Cuculus canorus GCA_017976305.1_bCucCan1.alt 1,004 1,063,845,602 8 1,739 21.42
45 common frog (alternate hap 2021) Rana temporaria GCA_905171725.1_aRanTem1.1_alternate_haplotype 12,019 3,686,210,129 14 85,788 55.47
46 common myna (bArcTri1 alternate hap 2023) Acridotheres tristis GCA_027559525.1_bAcrTri1.alt 2,221 969,356,965 1 500 25.11
47 common pipistrelle (alternate hap 2020) Pipistrellus pipistrellus GCA_903992515.1_mPipPip1.1_alternate_haplotype 10,447 1,579,816,813 12 2,732 33.96
48 common sole (alternate hap 2023) Solea solea GCA_958295035.1_fSolSol10.1_alternate_haplotype 1,318 627,818,797 0 0 31.70
49 common swift (bApuApu2 alternate hap 2021) Apus apus GCA_020740585.1_bApuApu2.alt.cur 1,697 1,019,504,970 5 105 20.89
50 common tern Sterna hirundo GCA_009819645.1_bSteHir1.alt 2,235 1,175,438,911 0 0 20.72
51 common toad (alternate hap 2021) Bufo bufo GCA_905171715.1_aBufBuf1.1_alternate_haplotype 24,195 3,744,894,388 156 491,279 61.49
52 common yellowthroat Geothlypis trichas GCA_009764545.1_bGeoTri1.alt 4,976 976,433,058 1 32 19.80
53 convict blenny (fPhoLeu1 alternate hap 2021) Pholidichthys leucotaenia GCA_020510965.1_fPhoLeu1.alt 21,417 1,865,716,438 144 143,564 67.06
54 copperband butterflyfish (fCheRos1 alternate hap 2021) Chelmon rostratus GCA_017976315.1_fCheRos1.alt 2,125 601,666,562 1 500 32.92
55 Cretan wall lizard (alternate hap 2023) Podarcis cretensis GCA_951804955.1_rPodCre2.1_alternate_haplotype 1,936 1,372,769,884 0 0 38.04
56 crucian carp (alternate hap 2023) Carassius carassius GCA_963082795.1_fCarCar2.1_alternate_haplotype 3,713 209,623,727 0 0 46.45
57 cunner (fTauAds1 alternate hap 2021) Tautogolabrus adspersus GCA_020745675.1_fTauAds1.alt.cur 1,476 695,716,069 31 74,261 30.23
58 Dalmatian pelican (alternate hap 2023) Pelecanus crispus GCA_030449815.1_bPelCri1.alt 7,284 1,207,417,857 0 0 23.23
59 Daubenton's bat (alternate hap 2023) Myotis daubentonii GCA_963242275.1_mMyoDau2.1_alternate_haplotype 4,930 1,938,252,784 0 0 37.25
60 denticle herring Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
61 diamondback terrapin (hap2 rMalTer1 2023) Malaclemys terrapin pileata GCA_027887205.1_rMalTer1.hap2 59 2,212,837,039 127 498,579 46.36
62 dorado (hap2 2023) Salminus brasiliensis GCA_030463535.1_fSalBra1.hap2 104 1,066,501,646 726 9,072,217 36.78
63 Downy woodpecker (bDryPub1 alternate hap 2020) Dryobates pubescens GCA_014839825.1_bDryPub1.alt 1,342 1,082,594,729 4 226 31.30
64 dugong (hap2 mDugDug1 2023) Dugong dugon GCA_030020955.1_mDugDug1.hap2 167 3,154,453,075 89 17,631 47.38
65 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt 971 1,042,364,165 4 539 20.18
66 eastern narrow-mouthed toad (hap2 2023) Gastrophryne carolinensis GCA_027917415.1_aGasCar1.hap2 590 4,305,890,454 1,773 354,600 60.57
67 electric eel (fEleEle1 alternate hap 2020) Electrophorus electricus GCA_013347915.1_fEleEle1.alt 2,629 428,136,346 0 0 24.43
68 epaulette shark (alternate hap sHemOce1 2021) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon 4,000 4,149,461,884 3,552 83,364,248 44.34
69 ermine (alternate hap 2020) Mustela erminea GCA_009829165.1_mMusErm1.alt 3,327 1,640,216,494 0 0 40.61
70 Eurasian badger (v3.2 2022) Meles meles GCA_922984935.2_mMelMel3.2_paternal_haplotype 538 2,738,694,574 101 23,800 38.09
71 Eurasian minnow (alternate hap 2023) Phoxinus phoxinus GCA_949152275.1_fPhoPho1.1_alternate_haplotype 4,941 925,610,136 8 1,600 44.35
72 Eurasian nightjar (alternate hap 2021) Caprimulgus europaeus GCA_907165095.1_bCapEur3.1_alternate_haplotype 2,502 1,051,868,380 25 3,300 21.18
73 Eurasian red squirrel (alternate hap 2019) Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype 10,655 1,366,022,868 2 71 35.43
74 Eurasian river otter (alternate hap 2019) Lutra lutra GCA_902653095.1_mLutLut1.1_alternate_haplotype 8,506 1,081,484,062 0 0 42.29
75 Eurasian water vole (alternate hap 2020) Arvicola amphibius GCA_903992525.1_mArvAmp1.1_alternate_haplotype 16,368 1,764,008,884 105 7,311 31.38
76 European chub (alternate hap 2023) Squalius cephalus GCA_949319155.1_fSquCep2.1_alternate_haplotype 7,425 979,250,430 12 2,400 48.14
77 European flounder (alternate hap 2023) Platichthys flesus GCA_949316195.1_fPlaFle2.1_alternate_haplotype 1,915 587,918,088 0 0 26.42
78 European leaf-toed gecko (hap2 2023) Euleptes europaea GCA_029931755.1_rEulEur1.hap2 381 1,775,520,415 177 5,646,691 39.56
79 European mink (alternate hap 2023) Mustela lutreola GCA_030435785.1_mMusLut2.alt 12,043 1,786,977,177 0 0 34.22
80 European plaice (alternate hap 2022) Pleuronectes platessa GCA_947347695.1_fPlePla1.1_alternate_haplotype 3,219 613,421,917 3 600 28.01
81 European pond turtle (hap2 rEmyOrb1 2023) Emys orbicularis GCA_028017845.1_rEmyOrb1.hap2 156 2,327,425,914 130 5,287,839 35.51
82 European robin (alternate hap 2021) Erithacus rubecula GCA_903797565.2_bEriRub2.2_alternate_haplotype 3,668 912,720,829 18 4,600 19.76
83 European shag (alternate hap 2023) Phalacrocorax aristotelis GCA_949628205.1_bGulAri2.1_alternate_haplotype 9,751 1,080,507,657 1 17 21.58
84 European shrew (alternate hap 2023) Sorex araneus GCA_027595995.1_mSorAra2.alt 5,699 2,319,662,114 0 0 41.95
85 European snow vole (alternate hap 2023) Chionomys nivalis GCA_950005115.1_mChiNiv1.1_alternate_haplotype 4,255 2,022,897,225 1 33 33.35
86 European starfish Asterias rubens GCA_902459445.1_eAstRub1.2_alternate_haplotype 3,969 390,768,305 1 33 37.21
87 European turtle dove (v1.2 alternate hap 2021) Streptopelia turtur GCA_901699165.2_bStrTur1.2_alternate_haplotype 3,334 1,035,330,184 0 0 20.26
88 European woodmouse (alternate hap 2022) Apodemus sylvaticus GCA_947179525.1_mApoSyl1.1_alternate_haplotype 10,861 2,392,986,241 2 34 39.68
89 Eurpoean golden plover (bPluApr1 alternate hap 2021) Pluvialis apricaria GCA_017639475.1_bPluApr1.alt 1,147 1,085,787,090 5 552 20.74
90 fire-bellied toad (aBomBom1 alternate hap 2023) Bombina bombina GCA_027579415.1_aBomBom1.alt 13,751 1,936,746,371 0 0 57.30
91 flier cichlid Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
92 Florida worm lizard (hap2 rRhiFlo1 2023) Rhineura floridana GCA_030035675.1_rRhiFlo1.hap2 77 2,307,436,586 242 6,466,284 45.32
93 freshwater garfish (fXenCan1 alternate hap 2020) Xenentodon cancila GCA_014839645.1_fXenCan1.alt 5,169 658,557,970 2 1,000 26.36
94 Gaboon caecilian Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
95 garden warbler (bSylBor1 alternate hap 2020) Sylvia borin GCA_014839765.1_bSylBor1.alt 775 1,032,649,170 0 0 19.91
96 gharial (hap2 2023) Gavialis gangeticus GCA_030020295.1_rGavGan2.hap2 160 2,328,538,659 118 1,108,111 32.92
97 giant manta (sMobBir1 2023) Mobula birostris GCA_030035685.1_sMobBir1.hap2 1,558 3,634,101,053 1,742 54,983,815 51.68
98 gilthead seabream Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
99 golden eagle (v1.4 alternate hap 2021) Aquila chrysaetos chrysaetos GCA_902153765.2_bAquChr1.4_alternate_haplotype 3,855 792,810,001 2 57 18.35
100 Goodes thornscrub tortoise Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
101 Grand Cayman blue iguana (hap2 2023) Cyclura pinguis GCA_030412085.1_rCycPin1.hap2 33 1,955,392,031 19 19,385,908 32.31
102 gray short-tailed opossum (mMonDom1 alternate hap 2023) Monodelphis domestica GCA_027917375.1_mMonDom1.alt 8,062 2,616,995,731 24 91,053 43.40
103 gray squirrel (alternate hap 2019) Sciurus carolinensis GCA_902685475.1_mSciCar1.1_alternate_haplotype 9,508 2,057,949,030 2 530 35.01
104 gray wolf (alternate hap 2021) Canis lupus GCA_905319845.1_mCanLor1.1_alternate_haplotype 5,536 1,446,594,657 1 500 32.70
105 great potoo (bNycGra1 alternate hap 2020) Nyctibius grandis GCA_013368595.1_bNycGra1.alt 1,395 1,041,284,291 14 2,599 22.77
106 great white shark (alternate hap 2021) Carcharodon carcharias GCA_017639455.1_sCarCar2.alt 39 6,205,005 28 1,535 60.53
107 greater argentine (alternate hap 2023) Argentina silus GCA_951799415.1_fArgSil1.1_alternate_haplotype 4,805 550,403,860 0 0 35.98
108 greater horseshoe bat (MPI-CBG alternate hap 2019) Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h 13,424 1,514,615,512 2 1,000 34.47
109 greater pipefish Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
110 greater pipefish (v2 alternate haplotype 2023) Syngnathus acus GCA_948146095.1_fSynAcu2.1_alternate_haplotype 4,533 334,243,819 0 0 29.10
111 greater sand-eel (alternate hap 2023) Hyperoplus immaculatus GCA_949358355.1_fHypImm3.1_alternate_haplotype 4,952 763,769,615 0 0 38.84
112 green sea turtle (v2 alternate hap 2021) Chelonia mydas GCA_015220195.2_rCheMyd1.alt.v2 6,737 1,896,142,417 60 854,042 44.96
113 grey whale (mEscRob2 alternate hap 2023) Eschrichtius robustus GCA_028021475.1_mEscRob2.alt 14,442 2,787,390,652 0 0 45.70
114 gudgeon (alternate hap 2023) Gobio gobio GCA_949357705.1_fGobGob1.1_alternate_haplotype 7,245 1,349,092,698 8 1,600 67.88
115 gyrfalcon (bFalRus1 alternate hap 2020) Falco rusticolus GCA_015220155.1_bFalRus1.alt 8,370 516,243,243 0 0 16.87
116 Harpy eagle (bHarHar1 alternate hap 2022) Harpia harpyja GCA_026419925.1_bHarHar1 5,968 1,185,324,778 1 500 25.31
117 Hawaiian crow (bCorHaw1 alternate hap 2021) Corvus hawaiiensis GCA_020740675.1_bCorHaw1.alt.cur 2,762 628,844,469 0 0 20.95
118 hazel dormouse (alternate hap 2023) Muscardinus avellanarius GCA_963383665.1_mMusAve1.1_alternate_haplotype 31,856 1,187,222,402 0 0 41.89
119 hoatzin (hap2 2023) Opisthocomus hoazin GCA_030867165.1_bOpiHoa1.hap2 323 1,355,639,139 212 42,400 31.88
120 honeycomb rockfish (fSebUmb1 alternate hap 2020) Sebastes umbrosus GCA_015220095.1_fSebUmb1.alt 2,131 765,970,641 21 855 37.65
121 hourglass treefrog (paternal 2023) Dendropsophus ebraccatus GCA_027789765.1_aDenEbr1.pat 2,200 2,214,937,069 804 6,692,944 51.44
122 house finch (bHaeMex1 alternate hap 2022) Haemorhous mexicanus GCA_027406555.1_bHaeMex1.alt 1,003 1,039,351,984 1 13 22.74
123 house mouse (alternate hap 2023) Mus musculus GCA_949316305.1_mMusMuc1.1_alternate_haplotype 1,806 114,758,919 0 0 72.25
124 human (WGS:JACSEW01 2021 alternate hap) Homo sapiens GCA_016700455.2_mHomSap3.pat 994 2,744,463,177 1,172 10,968,304 51.25
125 Humboldt's penguin (bSphHub1 alternate hap 2022) Spheniscus humboldti GCA_027474345.1_bSphHub1.alt 4,342 1,159,977,626 1 77 24.68
126 Indian glassy fish Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
127 Indo-Pacific tarpon (alternate hap 2020) Megalops cyprinoides GCA_013368575.1_fMegCyp1.alt 4,333 920,469,332 3 300 21.53
128 jewelled blenny Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
129 John dory (alternate hap 2023) Zeus faber GCA_960530785.1_fZeuFab8.1_alternate_haplotype 5,370 809,816,570 0 0 40.06
130 kagu (bRhyJub1 alternate hap 2023) Rhynochetos jubatus GCA_027595965.1_bRhyJub1.alt 2,818 791,426,973 1 32 25.70
131 kakapo (Jane alternate hap 2019) Strigops habroptila GCA_004011185.1_bStrHab1_v1.h 3,728 285,706,558 11 5,465 18.11
132 killer whale (alternate hap 2022) Orcinus orca GCA_937001455.1_mOrcOrc1.1_alternate_haplotype 12,410 1,882,900,201 0 0 41.12
133 Korean giant-fin mudskipper Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
134 lammergeier (bGypBar2 alternate hap 2023) Gypaetus barbatus GCA_028017155.1_bGypBar2.alt 2,892 979,058,826 0 0 23.84
135 lance-tailed manakin Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt 4,269 1,054,616,617 0 0 19.51
136 lanner falcon (bFalBia1 alternate hap 2022) Falco biarmicus GCA_023634305.1_bFalBia1.alt 3,090 1,202,443,328 0 0 22.09
137 large-eye snaggletooth (alternate hap 2023) Borostomias antarcticus GCA_949987545.1_fBorAnt1.1_alternate_haplotype 5,761 788,134,964 0 0 42.72
138 largescale foureyes (fAnaAna1 alternate hap 2020) Anableps anableps GCA_014839705.1_fAnaAna1.alt 5,088 445,542,990 0 0 27.42
139 Lataste's viper (alternate hap 2022) Vipera latastei GCA_024294605.1_rVipLat1.alt 6,799 1,549,880,332 1 500 44.01
140 leatherback sea turtle Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
141 leatherback sea turtle (v2 alternate hap 2020) Dermochelys coriacea GCA_009762595.2_rDerCor1.alt.v2 8,999 1,444,786,651 7 352 47.10
142 lesser Egyptian jerboa (alternate hap 2021) Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon 508 2,595,216,862 2,875 188,089,954 40.53
143 lesser kestrel (alternate hap 2021) Falco naumanni GCA_017639645.1_bFalNau1.mat 551 1,156,765,323 258 11,969,465 19.17
144 lesser rhea (bPtePen1 alternate hap 2023) Rhea pennata GCA_028389885.1_bPtePen1.alt 910 983,620,806 0 0 21.55
145 lesser salmon catfish (fNeoGra1 alternate hap 2023) Neoarius graeffei GCA_027579805.1_fNeoGra1.alt 6,590 2,195,086,485 3 67 62.71
146 lesser sand-eel (alternate hap 2023) Ammodytes marinus GCA_950004245.1_fAmmMar1.1_alternate_haplotype 3,619 756,335,084 1 200 38.09
147 limp eelpout (alternate hap 2023) Melanostigma gelatinosum GCA_949748265.1_fMelGel1.1_alternate_haplotype 2,698 629,798,166 2 400 30.28
148 live sharksucker Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
149 long-tailed hermit (PSU5 alternate hap 2022) Phaethornis superciliosus GCA_023637925.1_DD_ASM_B1a 230 1,014,956,223 0 0 20.48
150 longspined bullhead (fTauBub2.1 alternate hap 2021) Taurulus bubalis GCA_910589325.1_fTauBub2.1_alternate_haplotype 1,778 614,755,631 0 0 28.10
151 lumpfish Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
152 maguari stork (bCicMag1 alternate hap 2021) Ciconia maguari GCA_017639665.1_bCicMag1.alt 4,278 967,599,765 5 726 19.61
153 marbled rockcod (alternate hap 2023) Notothenia rossii GCA_949606865.1_fNotRos5.1_alternate_haplotype 8,737 1,005,523,998 0 0 45.04
154 Mauritius kestrel (alternate hap 2023) Falco punctatus GCA_963210275.1_bFalPun1.1_alternate_haplotype 2,259 390,584,314 0 0 22.52
155 Mauritius parakeet (alternate hap 2023) Psittacula echo GCA_963243765.1_bPsiEch3.1_alternate_haplotype 2,130 791,895,490 0 0 24.89
156 meadow viper (alternate hap 2022) Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype 9,575 1,180,062,022 12 2,400 41.76
157 milkfish Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
158 minke whale (alternate hap 2023) Balaenoptera acutorostrata GCA_950005055.1_mBalAcu1.1_alternate_haplotype 21,271 2,590,401,380 1 27 41.31
159 monito del monte (mDroGli1 alternate hap 2021) Dromiciops gliroides GCA_019395325.1_mDroGli1.alt 9,926 2,818,512,018 33 1,259 42.26
160 mute swan (bCygOlo1 v2 alternate hap 2021) Cygnus olor GCA_009769485.2_bCygOlo1.alt.v2 5,626 814,594,871 14 918 20.18
161 Nelson's sparrow (bAmmNel1 alternate hap 2023) Ammospiza nelsoni GCA_027579665.1_bAmmNel1.alt 2,834 1,033,298,713 0 0 26.31
162 New Caledonian crow Corvus moneduloides GCA_009651025.1_bCorMon1.alt 894 905,198,257 0 0 19.52
163 New Zealand spotty Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
164 ninespine stickleback (alternate hap 2023) Pungitius pungitius GCA_949316245.1_fPunPun2.1_alternate_haplotype 1,934 413,337,341 0 0 27.13
165 North American porcupine (mEreDor1 alternate hap 2023) Erethizon dorsatum GCA_028500835.1_mEreDor1.alt 5,050 1,937,137,571 1 37 40.58
166 North Atlantic right whale (mEubGla1 hap2 2023) Eubalaena glacialis GCA_028564815.1_mEubGla1.hap2 779 2,832,194,838 363 4,859,315 44.01
167 northern bat (alternate hap 2023) Eptesicus nilssonii GCA_951640545.1_mEptNil1.1_alternate_haplotype 4,896 1,900,360,802 3 600 36.13
168 northern bottlenose whale (alternate hap 2023) Hyperoodon ampullatus GCA_949752845.1_mHypAmp2.1_alternate_haplotype 23,401 2,477,781,444 0 0 41.73
169 northern gannet (hap2 2023) Morus bassanus GCA_031468815.1_bMorBas2.hap2 421 1,294,804,326 248 49,600 21.09
170 northern goshawk (bAccGen1 v1 alternate hap 2022) Accipiter gentilis GCA_929447715.1_bAccGen1.1_alternate_haplotype 4,484 1,112,029,929 2 50 24.06
171 northern pike Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
172 Norway rat BN7 haplotype Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype 3,156 286,931,382 6 327 50.93
173 olive python (hap2 2023) Liasis olivaceus GCA_030867085.1_rLiaOli1.hap2 65 1,478,263,624 93 5,065,312 29.98
174 orange-tipped seq squirt (alternate hap 2023) Corella eumyota GCA_963082865.1_kaCorEumy4.1_alternate_haplotype 70 2,977,316 0 0 43.03
175 orbiculate cardinalfish Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
176 painted frog (alternate hap 2022) Discoglossus pictus GCA_027410455.1_aDisPic1.alt 4,005 1,937,156,624 76 1,862 53.01
177 pale spear-nosed bat (MPI-MPIP v3 mPhyDis1 alternate hap 2020) Phyllostomus discolor GCA_004115245.2_mPhyDis1.alti.v3 10,857 2,051,656,167 38 18,868 29.67
178 peladilla (fAplTae1 alternate hap 2021) Aplochiton taeniatus GCA_017639685.1_fAplTae1.alt 5,690 560,414,924 11 839 28.85
179 peregrine falcon (bFalPer1 alternate hap 2022) Falco peregrinus GCA_023634185.1_bFalPer1.alt 2,745 1,175,509,191 0 0 21.18
180 Philippine flying lemur (mCynVol1 alternate hap 2022) Cynocephalus volans GCA_027409165.1_mCynVol1.alt 1,750 2,453,279,509 0 0 39.54
181 pinecone soldierfish Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
182 pink pigeon (alternate hap 2023) Nesoenas mayeri GCA_963082445.1_bNesMay2.1_alternate_haplotype 1,277 867,500,292 0 0 21.65
183 plains spadefoot toad (alternate hap 2022) Spea bombifrons GCA_027382365.2_aSpeBom1.2.alt 1,516 785,569,511 0 0 34.39
184 platypus (alternate hap Pmale09 2020) Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 5,843 1,575,252,831 25 5,525 51.65
185 plumbeous ibis (bTheCae1 alternate hap 2021) Theristicus caerulescens GCA_020745805.1_bTheCae1.alt.cur 749 1,041,135,290 4 95 19.61
186 pollack (alternate hap 2023) Pollachius pollachius GCA_949987605.1_fPolPol2.1_alternate_haplotype 4,970 591,893,695 0 0 33.27
187 prehistoric monster fish Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
188 razorbill Alca torda GCA_008658355.1_bAlcTor1_alternate 3,309 1,220,378,950 0 0 20.28
189 red deer (alternate hap 2021) Cervus elaphus GCA_910593805.1_mCerEla1.1_alternate_haplotype 4,021 2,903,978,491 22 11,000 50.27
190 red-bellied piranha (fPygNat1 alternate hap 2020) Pygocentrus nattereri GCA_015220065.1_fPygNat1.alt 1,751 289,313,524 0 0 49.72
191 red-crested turaco Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt 3,476 1,084,112,861 0 0 21.89
192 Red-fronted tinkerbird (bPogPus1 alternate hap 2020) Pogoniulus pusillus GCA_015220175.1_bPogPus1.alt 2,748 1,101,771,457 12 2,226 34.66
193 red-legged seriema Cariama cristata GCA_009819485.1_bCarCri1.alt 2,840 930,239,327 1 98 18.92
194 red-throated loon (hap2 2023 genbank) Gavia stellata GCA_030936135.1_bGavSte3.hap2 1,186 1,321,287,916 249 49,800 23.65
195 reedfish Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
196 reedfish (alternate hap 2021) Erpetoichthys calabaricus GCA_900700845.3_fErpCal1.3_alternate_haplotype 17,082 3,014,944,822 17 314,459 46.95
197 Rice's whale (hap2 2023 genbank) Balaenoptera ricei GCA_028023285.1_mBalRic1.hap2 774 2,678,442,663 334 2,621,494 41.09
198 rifleman (bAcaChl1 alternate hap 2021) Acanthisitta chloris GCA_016880875.1_bAcaChl1.alt 2,879 827,793,803 20 1,043 19.12
199 ring-tailed lemur (mLemCat1 alternate hap 2021) Lemur catta GCA_020740595.1_mLemCat1.alt 312 2,266,570,666 1 500 37.07
200 roach minnow (alternate hap 2023) Rutilus rutilus GCA_951802655.1_fRutRut2.1_alternate_haplotype 4,606 1,042,711,183 6 1,200 48.42
201 rock gunnel (alternate hap 2021) Pholis gunnellus GCA_910591705.2_fPhoGun1.2_alternate_haplotype 2,165 590,303,236 1 500 25.85
202 rock ptarmigan (bLagMut1 alternate hap 2022) Lagopus muta GCA_023344045.1_bLagMut1_alternate 3,212 923,340,374 13 1,320 20.42
203 Rosablanca catfish (hap2 2023) Trichomycterus rosablanca GCA_030015355.1_fTriRos1.hap2 302 996,754,446 192 38,400 48.41
204 royal ground snake (hap2 2023) Erythrolamprus reginae GCA_031021085.1_rEryReg1.hap2 1,128 2,038,227,610 0 0 53.01
205 royal ground snake (hap3 2023) Erythrolamprus reginae GCA_031001685.1_rEryReg1.hap3 3,543 2,090,234,102 0 0 57.37
206 saddleback dolphin (alternate hap 2023) Delphinus delphis GCA_949987525.1_mDelDel1.1_alternate_haplotype 7,426 2,440,532,866 1 31 40.32
207 Saker falcon (bFalChe1 alternate hap 2022) Falco cherrug GCA_023634115.1_bFalChe1.alt 4,160 1,210,282,093 2 51 23.62
208 saltmarsh sparrow (bAmmCau1 alternate hap 2023) Ammospiza caudacuta GCA_027887135.1_bAmmCau1.alt 3,054 1,166,743,317 0 0 26.27
209 sand lizard Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
210 Sardinian treefrog (hap2 2023) Hyla sarda GCA_029493135.1_aHylSar1.hap2 2,802 4,080,080,015 2,097 419,128 63.87
211 sea lamprey Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
212 shanny (alternate hap 2023) Lipophrys pholis GCA_963383635.1_fLipPho2.1_alternate_haplotype 3,846 738,669,690 1 34 28.51
213 Siamese fighting fish Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
214 Siamese fighting fish (v5.4 alternate hap 2023) Betta splendens GCA_900651605.2_fBetSpl5.4_alternate_haplotype 3,764 441,035,931 108 2,919 23.26
215 slow loris (mNycCou1 alternate hap 2022) Nycticebus coucang GCA_027406535.1_mNycCou1.alt 6,485 2,692,941,978 0 0 39.87
216 smaller spotted catshark (alternate hap 2021) Scyliorhinus canicula GCA_902713625.2_sScyCan1.2_alternate_haplotype 26,649 3,867,000,599 6 319 51.57
217 smalltooth sawfish Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
218 soprano pipistrelle (alternate hap 2023) Pipistrellus pygmaeus GCA_949987765.1_mPipPyg2.1_alternate_haplotype 2,716 1,764,844,953 1 17 36.36
219 South Island takahe (alternate hap 2021) Porphyrio hochstetteri GCA_020801775.1_bPorHoc1.pat.decon 178 1,245,128,614 238 10,404,950 24.85
220 southern bluefin tuna (alternate hap 2021) Thunnus maccoyii GCA_910596085.1_fThuMac1.1_alternate_haplotype 895 782,574,410 0 0 33.63
221 southern tamandua (mTamTet1 alternate hap 2022) Tamandua tetradactyla GCA_023853755.1_mTamTet1.alt 7,862 2,898,984,517 4 713 39.97
222 southern two-toed sloth (mChoDid1 alternate hap 2020) Choloepus didactylus GCA_015220265.1_mChoDid1.alt 11,980 3,180,649,806 70 76,707 40.66
223 speckled mousebird (hap2 2023) Colius striatus GCA_028858625.1_bColStr4.hap2 243 1,242,527,572 151 5,489,805 25.54
224 stone loach (alternate hap 2022) Barbatula barbatula GCA_947034905.1_fBarBar1.1_alternate_haplotype 2,237 571,749,702 0 0 38.06
225 striped catfish (fPanHyp1 alternate hap 2022) Pangasianodon hypophthalmus GCA_027382375.1_fPanHyp1.alt 3,274 738,869,872 1 45 37.85
226 striped dolphin (alternate hap 2023) Stenella coeruleoalba GCA_951394445.1_mSteCoe1.1_alternate_haplotype 3,464 2,485,529,352 0 0 40.98
227 Suruca trogon (bTroSur1 alternate hap 2021) Trogon surrucura GCA_020746095.1_bTroSur1.alt.cur 1,535 997,329,498 17 496 21.93
228 Swainson's thrush (bCatUst1 v2 alternate hap 2020) Catharus ustulatus GCA_009819505.2_bCatUst1.alt.v2 3,601 1,128,658,440 13 343 22.74
229 swamp sparrow (bMelGeo1 alternate hap 2023) Melospiza georgiana GCA_028019105.1_bMelGeo1.alt 862 1,075,048,352 0 0 25.04
230 tammar wallaby (mMacEug1 alternate hap 2023) Notamacropus eugenii GCA_028389975.1_mMacEug1.alt 14,283 1,837,738,679 2 62 38.42
231 tawny frogmouth (bPodStr1 alternate hap 2023) Podargus strigoides GCA_028020675.1_bPodStr1.alt 911 977,391,185 1 35 22.09
232 thorny skate Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
233 tiger shark (hap2 2023) Stegostoma tigrinum GCA_030684295.1_sSteTig4.hap2 933 3,603,936,669 1,203 12,512,178 59.53
234 tiny Cayenne caecilian Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
235 torafugu Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
236 trahira (hap2 2023) Hoplias malabaricus GCA_029633875.1_fHopMal1.hap2 452 1,117,251,445 907 44,518,715 39.05
237 tufted duck Aythya fuligula GCA_009819845.1_bAytFul2.alt 780 1,013,629,683 1 100 21.73
238 two-lined caecilian Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
239 vaquita (alternate hap mPhoSin1 2019) Phocoena sinus GCA_008692045.1_mPhoSin1.alt 9,469 995,426,950 1 19 43.86
240 warty frogfish (fAntMac1 alternate hap 2020) Antennarius maculatus GCA_013347815.1_fAntMac1.alt 2,294 530,348,589 0 0 29.49
241 western capercaillie (alternate hap 2023) Tetrao urogallus GCA_951394355.1_bTetUro1.1_alternate_haplotype 5,463 853,758,599 0 0 20.30
242 western European hedgehog (alternate hap 2023) Erinaceus europaeus GCA_950295305.1_mEriEur2.1_alternate_haplotype 26,600 1,850,742,846 1 200 53.70
243 Western terrestrial garter snake Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
244 whiskered treeswift (bHemCom1 alternate hap 2021) Hemiprocne comata GCA_020745695.1_bHemCom1.alt.cur 2,405 1,052,608,110 1 13 20.56
245 white-beaked dolphin (alternate hap 2023) Lagenorhynchus albirostris GCA_949774935.1_mLagAlb1.1_alternate_haplotype 25,619 2,036,251,322 0 0 38.99
246 white-tailed eagle (bHalAlb1.1 alternate hap 2022) Haliaeetus albicilla GCA_947461935.1_bHalAlb1.1_alternate_haplotype 4,971 693,161,704 0 0 22.93
247 white-toothed pygmy shrew (mSunEtr1 alternate hap 2022) Suncus etruscus GCA_024140225.1_mSunEtr1.alt.cur 14,815 1,515,382,512 26 820 45.74
248 white-tufted-ear marmoset (v1.2 paternal 2021) Callithrix jacchus GCA_011100535.2_mCalJac1.2.pat 1,217 2,727,469,741 994 11,472,100 47.03
249 whooping crane (paternal hap 2023) Grus americana GCA_028858595.1_bGruAme1.pat 395 1,200,805,165 586 5,991,895 20.22
250 yellow-spotted hyrax (mHetBru1 alternate hap 2023) Heterohyrax brucei GCA_028571665.1_mHetBru1.alt 4,168 3,021,267,164 1 32 44.05
251 yellow-throated sandgrouse Pterocles gutturalis GCA_009769505.1_bPteGut1.alt 1,958 1,037,717,354 0 0 20.79
252 yellowfin seabream (v.2019 alternate hap 2020) Acanthopagrus latus GCA_904848175.1_fAcaLat1.1_alternate_haplotype 349 47,986,553 80 8,000 20.44
253 yellowfin tuna (alternate hap 2021) Thunnus albacares GCA_914744365.1_fThuAlb1.1_alternate_haplotype 640 786,643,039 0 0 28.56
254 zebra finch (alternate hap Blue55 v1 2020) Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt 4,677 947,919,714 16 113,756 19.27
255 zebra finch (Black17 v1.4 alternate hap 2021) Taeniopygia guttata GCA_003957525.2_bTaeGut1.4.alt 1,646 887,567,949 10 876 20.75
256 zebrafish (fDanRer4 alternate hap 2022) Danio rerio GCA_944039255.1_fDanRer4.1_alternate_haplotype 4,719 458,104,506 0 0 59.54
257 zig-zag eel Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
TOTALS:total assembly count 257 1,366,078 360,348,459,422 28,064 549,578,985  
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies