VGP - Vertebrate Genomes Project assembly hubs, assembly statistics

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This assembly hub contains assemblies released by the Vertebrate Genomes Project. (set of alternate/haplotype assemblies)

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Abyssinian ground-hornbill Bucorvus abyssinicus GCA_009769595.1_bBucAby1.alt 3,527 1,024,138,499 0 0 18.52
2 American flamingo Phoenicopterus ruber ruber GCA_009819805.1_bPhoRub2.alt 3,529 1,167,509,893 0 0 20.15
3 Anna's hummingbird Calypte anna GCA_003957575.1_bCalAnn1_v1.h 3,803 952,083,371 6 2,998 20.33
4 Asian bonytongue Scleropages formosus GCA_900964985.2_fSclFor1.1_alternate_haplotype 2,006 751,313,211 1 25 26.29
5 Atlantic cod Gadus morhua GCA_902167395.1_gadMor3.0_alternate_haplotype 3,592 584,119,146 3 75 33.87
6 Atlantic halibut Hippoglossus hippoglossus GCA_009819745.1_fHipHip1.alt 4,053 676,690,381 62 3,468 24.50
7 European turtle dove Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype 3,333 1,035,214,426 0 0 20.26
8 blackcap Sylvia atricapilla GCA_009819715.1_bSylAtr1.alt 3,566 991,486,332 2 600 19.69
9 Blue whale Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate 12,574 1,876,085,767 0 0 43.51
10 blunt-snouted clingfish Gouania willdenowi GCA_900650505.1_fGouWil2.1_alternate_haplotype 7,674 759,272,921 1 31 42.46
11 Korean giant-fin mudskipper Periophthalmus magnuspinnatus GCA_009829135.1_fPerMag1.alt 2,799 698,977,026 1 500 39.04
12 channel bull blenny Cottoperca gobio GCA_900634435.1_fCotGob3.1_alternate_haplotype 11,555 671,265,480 10 925 26.88
13 prehistoric monster fish Thalassophryne amazonica GCA_902500245.1_fThaAma1.1_alternate_haplotype 19,579 1,767,810,094 8 248 58.58
14 tiny Cayenne caecilian Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
15 Gaboon caecilian Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
16 California sea lion Zalophus californianus GCA_009762295.1_mZalCal1.alt 3,093 1,970,798,971 0 0 42.94
17 Canada lynx Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt 15,033 1,415,234,291 3 143 43.55
18 carmine bee-eater Merops nubicus GCA_009819585.1_bMerNub1.alt 3,296 1,122,486,764 0 0 21.54
19 chicken (matHap) Gallus gallus GCF_016699485.2_bGalGal1.mat.broiler.GRCg7b 214 1,053,332,251 463 3,383,918 21.35
20 chicken (patHap) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w 255 953,182,234 254 3,312,879 20.28
21 climbing perch Anabas testudineus GCA_900650485.1_fAnaTes1.2_alternate_haplotype 2,641 539,091,056 36 2,107,526 21.00
22 common brushtail Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt 12,133 2,591,928,569 313 24,688 40.15
23 common tern Sterna hirundo GCA_009819645.1_bSteHir1.alt 2,235 1,175,438,911 0 0 20.72
24 common yellowthroat Geothlypis trichas GCA_009764545.1_bGeoTri1.alt 4,976 976,433,058 1 32 19.80
25 denticle herring Denticeps clupeoides GCA_900700345.2_fDenClu1.1_alternate_haplotype 1,972 457,704,509 4 226 27.74
26 East African grey crowned-crane Balearica regulorum gibbericeps GCA_011004865.1_bBalReg1.alt 971 1,042,364,165 4 539 20.18
27 ermine Mustela erminea GCA_009829165.1_mMusErm1.alt 3,327 1,640,216,494 0 0 40.61
28 Eurasian red squirrel Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype 10,655 1,366,022,868 2 71 35.43
29 European starfish Asterias rubens GCA_902459445.1_eAstRub1.2_alternate_haplotype 3,969 390,768,305 1 33 37.21
30 flier cichlid Archocentrus centrarchus GCA_007364235.1_fArcCen1_v1.h 9,292 1,034,011,644 13 209,959 30.50
31 gilthead seabream Sparus aurata GCA_900880695.1_fSpaAur1.1_alternate_haplotype 7,239 668,417,842 2 532 24.38
32 golden eagle Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype 3,860 823,060,160 39 561,510 19.26
33 Goodes thornscrub tortoise Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
34 greater horseshoe bat Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h 13,424 1,514,615,512 2 1,000 34.47
35 greater pipefish Syngnathus acus GCA_901709685.1_fSynAcu1.1_alternate_haplotype 1,848 234,858,432 2 600 23.32
36 Indian glassy fish Parambassis ranga GCA_900651595.1_fParRan2.1_alternate_haplotype 2,242 486,545,135 230 2,056,711 24.11
37 jewelled blenny Salarias fasciatus GCA_902148835.1_fSalaFa1.1_alternate_haplotype 4,516 894,675,777 9 3,272,521 28.60
38 Kakapo Strigops habroptila GCA_004011185.1_bStrHab1_v1.h 3,728 285,706,558 11 5,465 18.11
39 lance-tailed manakin Chiroxiphia lanceolata GCA_009829205.1_bChiLan1.alt 4,269 1,054,616,617 0 0 19.51
40 leatherback sea turtle Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
41 lesser kestrel (patHap) Falco naumanni GCF_017639655.1_bFalNau1.pat 291 1,215,719,379 298 4,077,287 19.20
42 live sharksucker Echeneis naucrates GCA_900963505.1_fEcheNa1.1_alternate_haplotype 1,405 528,272,450 19 224,651 22.09
43 lumpfish Cyclopterus lumpus GCA_009769515.1_fCycLum1.alt 1,866 480,967,379 0 0 28.18
44 milkfish Chanos chanos GCA_902362175.1_fChaCha1.1_alternate_haplotype 1,937 637,484,823 3 700 26.50
45 mute swan Cygnus olor GCA_009769485.1_bCygOlo1.alt 5,613 814,162,536 3 85 19.97
46 New Caledonian crow Corvus moneduloides GCA_009651025.1_bCorMon1.alt 894 905,198,257 0 0 19.52
47 New Zealand spotty Notolabrus celidotus GCA_009762545.1_fNotCel1.alt 3,286 770,553,912 0 0 33.61
48 northern pike Esox lucius GCA_011004835.1_fEsoLuc1.alt 3,813 622,571,242 11 417,274 31.83
49 orbiculate cardinalfish Sphaeramia orbicularis GCA_902148825.1_fSphaOr1.1_alternate_haplotype 6,896 1,135,435,641 142 630,303 45.58
50 pale spear-nosed bat Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h 10,835 2,050,602,545 38 18,868 29.66
51 pinecone soldierfish Myripristis murdjan GCA_902148815.1_fMyrMur1.1_alternate_haplotype 2,193 819,084,930 6 688 27.94
52 platypus Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 5,843 1,575,252,831 25 5,525 51.65
53 razorbill Alca torda GCA_008658355.1_bAlcTor1_alternate 3,309 1,220,378,950 0 0 20.28
54 red-crested turaco Tauraco erythrolophus GCA_009764505.1_bTauEry1.alt 3,476 1,084,112,861 0 0 21.89
55 red-legged seriema Cariama cristata GCA_009819485.1_bCarCri1.alt 2,840 930,239,327 1 98 18.92
56 reedfish Erpetoichthys calabaricus GCA_900700845.2_fErpCal1.1_alternate_haplotype 38,593 2,607,661,443 5 52,479 45.67
57 sand lizard Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
58 sea lamprey Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
59 Siamese fighting fish Betta splendens GCA_900651605.1_fBetSpl5.1_alternate_haplotype 3,705 426,643,682 2 125 22.60
60 smalltooth sawfish Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
61 Swainson's thrush Catharus ustulatus GCA_009819505.1_bCatUst1.alt 3,601 1,128,658,440 13 343 22.74
62 thorny skate Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
63 torafugu Takifugu rubripes GCA_901000745.3_fTakRub1.2_alternate_haplotype 2,012 350,016,965 38 625,268 20.31
64 tufted duck Aythya fuligula GCA_009819845.1_bAytFul2.alt 780 1,013,629,683 1 100 21.73
65 two-lined caecilian Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
66 vaquita Phocoena sinus GCA_008692045.1_mPhoSin1.alt 9,469 995,426,950 1 19 43.86
67 Western terrestrial garter snake Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
68 yellow-throated sandgrouse Pterocles gutturalis GCA_009769505.1_bPteGut1.alt 1,958 1,037,717,354 0 0 20.79
69 zebra finch Taeniopygia guttata GCA_003957525.1_bTaeGut1_v1.h 5,336 965,644,423 45 136,365 20.33
70 zebra finch Taeniopygia guttata GCA_009859025.1_bTaeGut2.p.v1.alt 4,677 947,919,714 16 113,756 19.27
71 zig-zag eel Mastacembelus armatus GCA_900700395.1_fMasArm1.2_alternate_haplotype 1,437 43,703,874 0 0 18.09
TOTALS:total assembly count 71 464,543 83,186,457,424 2,189 22,606,204  
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent

Alternate sets of VGP assembliesNCBI Refseq
Index pages:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Assembly statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies
Track statistics:  primary assembly alternate/haplotype trio mat/pat legacy/superseded other NCBI Refseq assemblies