Primates Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Angolan colobus Colobus angolensis palliatus GCF_000951035.1_Cang.pa_1.0 13,124 2,970,124,662 184,001 290,151,526 44.53
2 aye-aye Daubentonia madagascariensis GCA_004027145.1_DauMad_v1_BIUU 342,451 2,498,418,007 2,527 252,700 43.33
3 babakoto Indri indri GCA_004363605.1_IndInd_v1_BIUU 1,243,540 2,701,849,413 4,885 488,500 39.91
4 black snub-nosed monkey (Rb0 v2 refseq 2016) Rhinopithecus bieti GCF_001698545.2_ASM169854v2 103,881 2,975,791,191 149,839 175,189,087 47.42
5 black-handed spider monkey Ateles geoffroyi GCA_004024785.1_AteGeo_v1_BIUU 869,075 2,897,033,911 9,415 941,500 47.40
6 Bolivian titi Plecturocebus donacophilus GCA_004027715.1_CalDon_v1_BIUU 1,033,983 2,959,764,160 7,382 738,200 47.12
7 Bolivian squirrel monkey (100643 v2.1 BCM 2021) Saimiri boliviensis boliviensis GCF_016699345.2_BCM_Sbol_2.1 1,713 2,650,941,540 1,073 11,737,574 47.60
8 brown lemur Eulemur fulvus GCA_004027275.1_EulFul_v1_BIUU 1,693,913 2,748,885,701 3,706 370,600 40.87
9 chimpanzee Pan troglodytes GCF_002880755.1_Clint_PTRv2 4,346 3,050,398,082 715 31,805,092 53.03
10 Coquerel's mouse lemur Mirza coquereli GCA_004024645.1_MizCoq_v1_BIUU 440,879 2,340,865,962 10,667 1,066,700 41.16
11 Coquerel's sifaka 6110/Marcella (2015 refseq) Propithecus coquereli GCF_000956105.1_Pcoq_1.0 22,539 2,798,152,141 276,544 714,387,616 29.34
12 crab-eating macaque (2020 cy0333) Macaca fascicularis GCA_011100615.1_Macaca_fascicularis_6.0 936 2,906,138,557 560 37,827,885 50.75
13 crab-eating macaque CE1976F Keio U/RIKEN 2021 Macaca fascicularis GCF_012559485.2_MFA1912RKSv2 401 2,800,899,072 605 301,839 51.13
14 De Brazza's monkey Cercopithecus neglectus GCA_004027615.1_CertNeg_v1_BIUU 2,119,200 3,278,860,052 7,534 753,400 54.74
15 drill Mandrillus leucophaeus GCF_000951045.1_Mleu.le_1.0 12,821 3,061,992,840 233,234 340,585,302 43.97
16 Francois's langur Trachypithecus francoisi GCF_009764315.1_Tfra_2.0 1,016 2,875,571,204 766 76,600 52.63
17 gelada Theropithecus gelada GCF_003255815.1_Tgel_1.0 15,308 2,889,630,685 27,860 47,203,489 50.58
18 golden snub-nosed monkey (2019 Northwest U) Rhinopithecus roxellana GCF_007565055.1_ASM756505v1 3,257 3,038,477,066 2,832 283,062 53.42
19 gray mouse lemur Microcebus murinus GCF_000165445.2_Mmur_3.0 7,678 2,487,409,138 43,364 101,087,241 39.60
20 green monkey 1994-021 (2014 refseq) Chlorocebus sabaeus GCF_000409795.2_Chlorocebus_sabeus_1.1 2,004 2,789,656,328 178,940 37,655,329 49.28
21 green monkey WHO RCB 10-87 Chlorocebus sabaeus GCF_015252025.1_Vero_WHO_p1.0 6,872 2,937,827,970 8,419 7,277,730 51.03
22 Hanuman langur Semnopithecus entellus GCA_004025065.1_SemEnt_v1_BIUU 1,063,749 3,033,044,217 13,786 1,378,600 52.11
23 human (GRCh38.p13 2019) Homo sapiens GCF_000001405.39_GRCh38.p13 639 3,272,089,205 1,268 161,368,694 49.79
24 human (WGS:JACSEW01 2021 VGP alt pseudohaplotype) Homo sapiens GCA_016700455.2_mHomSap3.pat 994 2,744,463,177 1,172 10,968,304 51.25
25 human (WGS:JACSEX01 2021 VGP) Homo sapiens GCA_016695395.2_mHomSap3.mat 950 2,902,214,236 1,217 10,376,848 52.22
26 human HG002 maternal Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 355 3,061,735,012 109 1,510,078 54.00
27 human HG002 paternal Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 514 2,959,277,077 117 966,735 54.12
28 human T2T CHM13 v2.0 Homo sapiens GCA_009914755.4_T2T-CHM13v2.0 25 3,117,292,070 0 0 54.59
29 lesser dwarf lemur Cheirogaleus medius GCA_004024725.1_CheMed_v1_BIUU 547,751 2,393,092,913 7,529 752,900 40.20
30 Ma's night monkey Aotus nancymaae GCF_000952055.2_Anan_2.0 28,922 2,861,684,817 83,930 147,245,328 44.95
31 mantled howler monkey Alouatta palliata GCA_004027835.1_AloPal_v1_BIUU 1,136,565 3,033,617,595 16,130 1,613,000 48.86
32 northern white-cheeked gibbon (2019 U. Washington) Nomascus leucogenys GCF_006542625.1_Asia_NLE_v1 2,252 2,843,982,884 510 15,092,156 51.62
33 olive baboon (2019 UCSF) Papio anubis GCF_008728515.1_Panubis1.0 11,145 2,869,821,163 4,098 2,310,838 51.03
34 Panamanian white-faced capuchin Cebus imitator GCF_001604975.1_Cebus_imitator-1.0 7,156 2,717,703,182 152,704 107,204,088 45.76
35 Pere David's macaque Macaca thibetana thibetana GCF_024542745.1_ASM2454274v1 623 2,822,383,045 367 182,601 51.26
36 Philippine tarsier Carlito syrichta GCF_000164805.1_Tarsius_syrichta-2.0.1 337,189 3,453,864,774 155,714 48,109,210 47.19
37 pig-tailed macaque Macaca nemestrina GCF_000956065.1_Mnem_1.0 9,733 2,948,703,511 84,363 110,217,031 48.21
38 proboscis monkey Nasalis larvatus GCA_004027105.1_NasLar_v1_BIUU 923,815 3,050,434,315 18,289 1,828,900 53.26
39 pygmy chimpanzee (Ulindi refseq 2015) Pan paniscus GCF_000258655.2_panpan1.1 10,274 3,286,643,896 156,797 560,753,890 41.99
40 pygmy chimpanzee (Mhudiblu) Pan paniscus GCF_013052645.1_Mhudiblu_PPA_v0 4,293 3,051,901,337 683 36,551,040 46.02
41 red guenon Erythrocebus patas GCA_004027335.1_EryPat_v1_BIUU 2,563,960 3,490,485,286 13,075 1,307,500 56.67
42 red shanked douc langur Pygathrix nemaeus GCA_004024825.1_PygNem_v1_BIUU 1,431,093 3,217,150,031 14,638 1,463,800 54.57
43 Rhesus monkey (2019 U. Washington) Macaca mulatta GCF_003339765.1_Mmul_10 2,939 2,971,331,530 248 34,438,805 51.81
44 ring-tailed lemur (2021 VGP) Lemur catta GCF_020740605.2_mLemCat1.pri 185 2,245,601,549 210 3,641,621 37.86
45 Sclater's lemur (Harlow 2015) Eulemur flavifrons GCA_001262665.1_Eflavifronsk33QCA 38,366 2,115,567,618 254,375 21,464,219 39.62
46 silvery gibbon (HMO894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.2_HMol_V2 18,395 2,848,329,432 25,106 62,358,843 50.05
47 slow loris Nycticebus coucang GCA_004027815.1_NycCou_v1_BIUU 1,937,143 3,294,558,825 9,648 964,800 43.01
48 small-eared galago Otolemur garnettii GCF_000181295.1_OtoGar3 7,652 2,519,404,493 192,447 160,194,097 36.52
49 sooty mangabey Cercocebus atys GCF_000955945.1_Caty_1.0 11,433 2,848,246,356 65,329 60,973,514 48.86
50 Sumatran orangutan (2018 refseq) Pongo abelii GCF_002880775.1_Susie_PABv2 5,261 3,065,052,215 553 21,607,691 54.01
51 tamarin Saguinus imperator GCA_004024885.1_SagImp_v1_BIUU 1,666,189 3,493,717,886 8,881 888,100 48.29
52 tufted capuchin Sapajus apella GCF_009761245.1_GSC_monkey_1.0 17,326 2,727,448,409 43,216 35,817,188 47.44
53 Ugandan red Colobus (RC106 v4 2019) Piliocolobus tephrosceles GCF_002776525.4_ASM277652v4 34,372 2,997,795,033 57,757 87,908,719 50.23
54 western lowland gorilla (Kamilah 2019) Gorilla gorilla gorilla GCF_008122165.1_Kamilah_GGO_v0 5,486 3,044,872,214 859 45,844,299 49.83
55 white-faced saki Pithecia pithecia GCA_004026645.1_PitPit_v1_BIUU 892,330 2,933,562,501 11,316 1,131,600 47.99
56 white-fronted capuchin Cebus albifrons GCA_004027755.1_CebAlb_v1_BIUU 1,539,166 3,058,667,321 13,723 1,372,300 46.49
57 white-tufted-ear marmoset (cj1700 2020) Callithrix jacchus GCF_009663435.1_Callithrix_jacchus_cj1700_1.1 964 2,897,824,427 380 38,007,443 48.83
58 white-tufted-ear marmoset (maternal 2020 VGP) Callithrix jacchus GCA_011078405.1_mCalJac1.mat 216 2,811,151,840 1,068 11,863,565 49.86
59 white-tufted-ear marmoset (paternal 2020 VGP) Callithrix jacchus GCA_011100535.1_mCalJac1.pat 336 2,682,316,413 788 11,206,679 49.24
60 white-tufted-ear marmoset (paternal X 2020 VGP) Callithrix jacchus GCA_011100555.1_mCalJac1.pat.X 353 2,829,727,687 959 13,425,093 49.77
TOTALS:total assembly count 60 22,199,046 174,175,447,174 2,568,227 3,634,491,089  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 59 assemblies assembly stats track stats
Mammals 357 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats