VGP - Human Pangenome Reference Consortium assembly hubs, assembly statistics

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This assembly hub contains assemblies released by the Human Pangenome Reference Consortium.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 human (HG00438.mat 2021) Homo sapiens GCA_018471515.1_HG00438.pri.mat.f1_v2 258 3,035,735,720 0 0 53.20
2 human (HG00438.pat 2021) Homo sapiens GCA_018472595.1_HG00438.alt.pat.f1_v2 276 3,025,118,465 1 26 53.06
3 human (HG00621.mat 2021) Homo sapiens GCA_018472605.1_HG00621.pri.mat.f1_v2 253 3,023,026,071 0 0 53.11
4 human (HG00621.pat 2021) Homo sapiens GCA_018472575.1_HG00621.alt.pat.f1_v2 287 2,905,948,993 0 0 52.92
5 human (HG00673.mat 2021) Homo sapiens GCA_018472565.1_HG00673.pri.mat.f1_v2 348 3,053,585,067 0 0 53.41
6 human (HG00673.pat 2021) Homo sapiens GCA_018472585.1_HG00673.alt.pat.f1_v2 420 2,925,716,157 2 61 53.18
7 human (HG00733.mat 2021) Homo sapiens GCA_018506975.1_HG00733.pri.mat.f1_v2 609 3,026,533,161 1 26 53.05
8 human (HG00733.pat 2021) Homo sapiens GCA_018506955.1_HG00733.alt.pat.f1_v2 695 3,042,264,782 1 25 53.24
9 human (HG00735.mat 2021) Homo sapiens GCA_018472765.1_HG00735.pri.mat.f1_v2 244 3,037,795,105 1 26 53.24
10 human (HG00735.pat 2021) Homo sapiens GCA_018472715.1_HG00735.alt.pat.f1_v2 299 3,033,541,617 1 27 53.22
11 human (HG00741.mat 2021) Homo sapiens GCA_018471095.1_HG00741.pri.mat.f1_v2 297 3,036,701,854 0 0 53.23
12 human (HG00741.pat 2021) Homo sapiens GCA_018471105.1_HG00741.alt.pat.f1_v2 289 3,029,878,036 1 26 53.16
13 human (HG01071.mat 2021) Homo sapiens GCA_018472685.1_HG01071.pri.mat.f1_v2 236 3,012,710,110 0 0 52.88
14 human (HG01071.pat 2021) Homo sapiens GCA_018472725.1_HG01071.alt.pat.f1_v2 330 3,057,222,025 1 26 53.52
15 human (HG01106.mat 2021) Homo sapiens GCA_018471345.1_HG01106.pri.mat.f1_v2 272 3,035,845,582 1 26 53.22
16 human (HG01106.pat 2021) Homo sapiens GCA_018471075.1_HG01106.alt.pat.f1_v2 284 2,927,007,346 0 0 53.19
17 human (HG01109.mat 2021) Homo sapiens GCA_018504365.1_HG01109.pri.mat.f1_v2 399 3,035,677,523 1 19 53.22
18 human (HG01109.pat 2021) Homo sapiens GCA_018504645.1_HG01109.alt.pat.f1_v2 473 2,921,876,128 1 26 53.04
19 human (HG01123.mat 2021) Homo sapiens GCA_018469665.1_HG01123.pri.mat.f1_v2.1 340 3,012,822,948 1 26 52.94
20 human (HG01123.pat 2021) Homo sapiens GCA_018469695.1_HG01123.alt.pat.f1_v2.1 436 3,014,197,469 1 26 52.94
21 human (HG01175.mat 2021) Homo sapiens GCA_018471085.1_HG01175.pri.mat.f1_v2 315 3,030,735,652 3 112 53.28
22 human (HG01175.pat 2021) Homo sapiens GCA_018471065.1_HG01175.alt.pat.f1_v2 365 3,030,026,811 0 0 53.18
23 human (HG01243.mat 2021) Homo sapiens GCA_018504375.1_HG01243.pri.mat.f1_v2 345 3,028,987,351 0 0 53.19
24 human (HG01243.pat 2021) Homo sapiens GCA_018504045.1_HG01243.alt.pat.f1_v2 436 2,908,728,425 1 26 52.89
25 human (HG01258.mat 2021) Homo sapiens GCA_018469405.1_HG01258.pri.mat.f1_v2 346 3,032,420,282 1 26 53.14
26 human (HG01258.pat 2021) Homo sapiens GCA_018469675.1_HG01258.alt.pat.f1_v2 324 2,915,178,237 1 26 53.03
27 human (HG01358.mat 2021) Homo sapiens GCA_018469865.1_HG01358.pri.mat.f1_v2.1 334 3,029,587,694 1 26 53.22
28 human (HG01358.pat 2021) Homo sapiens GCA_018469965.1_HG01358.alt.pat.f1_v2.1 441 2,932,540,871 1 26 53.20
29 human (HG01361.mat 2021) Homo sapiens GCA_018469685.1_HG01361.pri.mat.f1_v2 295 3,025,313,608 0 0 53.15
30 human (HG01361.pat 2021) Homo sapiens GCA_018469705.1_HG01361.alt.pat.f1_v2 288 3,010,067,136 1 26 52.91
31 human (HG01891.mat 2021) Homo sapiens GCA_018467155.1_HG01891.pri.mat.f1_v2 331 3,022,952,778 1 26 53.09
32 human (HG01891.pat 2021) Homo sapiens GCA_018467165.1_HG01891.alt.pat.f1_v2 427 3,043,232,268 1 34 53.27
33 human (HG01928.mat 2021) Homo sapiens GCA_018472695.1_HG01928.pri.mat.f1_v2 244 3,025,961,049 0 0 53.21
34 human (HG01928.pat 2021) Homo sapiens GCA_018472705.1_HG01928.alt.pat.f1_v2 317 2,923,053,911 1 26 53.15
35 human (HG01952.mat 2021) Homo sapiens GCA_018471545.1_HG01952.pri.mat.f1_v2 307 3,020,563,005 0 0 52.96
36 human (HG01952.pat 2021) Homo sapiens GCA_018471555.1_HG01952.alt.pat.f1_v2 378 2,913,263,982 0 0 53.04
37 human (HG01978.mat 2021) Homo sapiens GCA_018472865.1_HG01978.pri.mat.f1_v2 247 3,051,869,401 0 0 53.50
38 human (HG01978.pat 2021) Homo sapiens GCA_018472845.1_HG01978.alt.pat.f1_v2 286 3,055,071,491 1 26 53.47
39 human (HG02055.mat 2021) Homo sapiens GCA_018506125.1_HG02055.pri.mat.f1_v2 306 3,019,590,183 1 34 53.04
40 human (HG02055.pat 2021) Homo sapiens GCA_018505855.1_HG02055.alt.pat.f1_v2 367 2,950,246,117 0 0 53.47
41 human (HG02080.mat 2021) Homo sapiens GCA_018504085.1_HG02080.pri.mat.f1_v2 422 3,033,198,064 1 26 53.21
42 human (HG02080.pat 2021) Homo sapiens GCA_018504055.1_HG02080.alt.pat.f1_v2 485 3,024,505,444 0 0 53.07
43 human (HG02109.mat 2021) Homo sapiens GCA_018505825.1_HG02109.pri.mat.f1_v2 445 3,026,115,826 0 0 53.07
44 human (HG02109.pat 2021) Homo sapiens GCA_018505865.1_HG02109.alt.pat.f1_v2 481 3,037,645,976 2 70 53.16
45 human (HG02145.mat 2021) Homo sapiens GCA_018852585.1_HG02145.pri.mat.f1_v2 437 3,030,589,160 1 27 53.16
46 human (HG02145.pat 2021) Homo sapiens GCA_018852595.1_HG02145.alt.pat.f1_v2 817 2,937,649,060 1 26 53.11
47 human (HG02148.mat 2021) Homo sapiens GCA_018471535.1_HG02148.pri.mat.f1_v2 423 3,036,136,215 0 0 53.31
48 human (HG02148.pat 2021) Homo sapiens GCA_018471525.1_HG02148.alt.pat.f1_v2 487 3,026,089,995 0 0 53.12
49 human (HG02257.mat 2021) Homo sapiens GCA_018466845.1_HG02257.pri.mat.f1_v2 292 3,031,071,346 1 26 53.19
50 human (HG02257.pat 2021) Homo sapiens GCA_018466835.1_HG02257.alt.pat.f1_v2 306 3,042,496,887 0 0 53.37
51 human (HG02486.mat 2021) Homo sapiens GCA_018467015.1_HG02486.pri.mat.f1_v2 283 3,030,662,429 1 26 53.23
52 human (HG02486.pat 2021) Homo sapiens GCA_018467005.1_HG02486.alt.pat.f1_v2 342 2,930,935,689 1 26 53.20
53 human (HG02559.mat 2021) Homo sapiens GCA_018466985.1_HG02559.pri.mat.f1_v2 329 3,040,531,780 0 0 53.20
54 human (HG02559.pat 2021) Homo sapiens GCA_018466855.1_HG02559.alt.pat.f1_v2 260 3,024,156,283 1 26 53.09
55 human (HG02572.mat 2021) Homo sapiens GCA_018470445.1_HG02572.pri.mat.f1_v2 632 3,055,382,050 1 36 53.37
56 human (HG02572.pat 2021) Homo sapiens GCA_018470435.1_HG02572.alt.pat.f1_v2 641 2,943,627,449 1 26 53.40
57 human (HG02622.mat 2021) Homo sapiens GCA_018469875.1_HG02622.pri.mat.f1_v2 292 3,046,105,980 0 0 53.26
58 human (HG02622.pat 2021) Homo sapiens GCA_018469925.1_HG02622.alt.pat.f1_v2 270 3,043,426,064 1 27 53.30
59 human (HG02630.mat 2021) Homo sapiens GCA_018469955.1_HG02630.pri.mat.f1_v2 497 3,041,877,443 1 27 53.19
60 human (HG02630.pat 2021) Homo sapiens GCA_018469945.1_HG02630.alt.pat.f1_v2 534 3,053,402,297 1 26 53.43
61 human (HG02717.mat 2021) Homo sapiens GCA_018469935.1_HG02717.pri.mat.f1_v2 323 3,038,320,685 1 34 53.31
62 human (HG02717.pat 2021) Homo sapiens GCA_018470425.1_HG02717.alt.pat.f1_v2 399 2,946,102,667 1 26 53.43
63 human (HG02723.mat 2021) Homo sapiens GCA_018504065.1_HG02723.pri.mat.f1_v2 429 3,027,203,092 2 60 53.13
64 human (HG02723.pat 2021) Homo sapiens GCA_018504075.1_HG02723.alt.pat.f1_v2 529 3,049,492,048 2 60 53.38
65 human (HG02818.mat 2021) Homo sapiens GCA_018503585.1_HG02818.pri.mat.f1_v2 620 3,037,441,458 1 26 53.29
66 human (HG02818.pat 2021) Homo sapiens GCA_018503575.1_HG02818.alt.pat.f1_v2 566 3,019,578,985 1 43 52.96
67 human (HG02886.mat 2021) Homo sapiens GCA_018470455.1_HG02886.pri.mat.f1_v2 461 3,049,134,634 0 0 53.20
68 human (HG02886.pat 2021) Homo sapiens GCA_018470465.1_HG02886.alt.pat.f1_v2 503 3,047,149,239 0 0 53.24
69 human (HG03098.mat 2021) Homo sapiens GCA_018506165.1_HG03098.pri.mat.f1_v2 331 3,059,522,785 0 0 53.55
70 human (HG03098.pat 2021) Homo sapiens GCA_018506155.1_HG03098.alt.pat.f1_v2 445 2,935,645,968 1 26 53.34
71 human (HG03453.mat 2021) Homo sapiens GCA_018472855.1_HG03453.pri.mat.f1_v2 439 3,047,998,942 1 26 53.30
72 human (HG03453.pat 2021) Homo sapiens GCA_018473305.1_HG03453.alt.pat.f1_v2 480 3,050,441,176 0 0 53.38
73 human (HG03486.mat 2021) Homo sapiens GCA_018503525.1_HG03486.pri.mat.f1_v2 480 3,034,915,351 2 106 53.11
74 human (HG03486.pat 2021) Homo sapiens GCA_018503245.1_HG03486.alt.pat.f1_v2 519 3,049,588,884 2 45 53.35
75 human (HG03492.mat 2021) Homo sapiens GCA_018505845.1_HG03492.pri.mat.f1_v2 495 3,023,922,307 1 26 53.06
76 human (HG03492.pat 2021) Homo sapiens GCA_018505835.1_HG03492.alt.pat.f1_v2 618 2,923,665,925 0 0 53.10
77 human (HG03516.mat 2021) Homo sapiens GCA_018469425.1_HG03516.pri.mat.f1_v2 320 3,033,479,640 0 0 53.04
78 human (HG03516.pat 2021) Homo sapiens GCA_018469415.1_HG03516.alt.pat.f1_v2 369 3,067,004,974 1 26 53.53
79 human (HG03540.mat 2021) Homo sapiens GCA_018473295.1_HG03540.pri.mat.f1_v2 435 3,048,418,776 1 26 53.43
80 human (HG03540.pat 2021) Homo sapiens GCA_018473315.1_HG03540.alt.pat.f1_v2 512 3,065,276,644 1 26 53.47
81 human (HG03579.mat 2021) Homo sapiens GCA_018472825.1_HG03579.pri.mat.f1_v2 456 3,035,143,227 1 27 53.16
82 human (HG03579.pat 2021) Homo sapiens GCA_018472835.1_HG03579.alt.pat.f1_v2 499 2,947,164,001 0 0 53.38
83 human (NA18906.mat 2021) Homo sapiens GCA_018503255.1_NA18906.pri.mat.f1_v2 271 3,055,692,855 0 0 53.35
84 human (NA18906.pat 2021) Homo sapiens GCA_018503285.1_NA18906.alt.pat.f1_v2 304 3,046,330,261 0 0 53.14
85 human (NA19240.mat 2021) Homo sapiens GCA_018503275.1_NA19240.pri.mat.f1_v2 387 3,032,066,086 1 26 53.06
86 human (NA19240.pat 2021) Homo sapiens GCA_018503265.1_NA19240.alt.pat.f1_v2 453 3,038,325,696 4 185 53.17
87 human (NA20129.mat 2021) Homo sapiens GCA_018504635.1_NA20129.pri.mat.f1_v2 448 3,045,049,146 1 52 53.32
88 human (NA20129.pat 2021) Homo sapiens GCA_018504625.1_NA20129.alt.pat.f1_v2 481 3,029,071,557 0 0 53.11
89 human (NA21309.mat 2021) Homo sapiens GCA_018504655.1_NA21309.pri.mat.f1_v2 508 3,036,775,048 1 26 53.29
90 human (NA21309.pat 2021) Homo sapiens GCA_018504665.1_NA21309.alt.pat.f1_v2 608 3,029,616,838 4 142 53.14
91 human (NA24385.mat 2022) Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 355 3,061,735,012 109 1,510,078 54.00
92 human (NA24385.pat 2022) Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 514 2,959,277,077 117 966,735 54.12
93 human (NA24385.mat 2021) Homo sapiens GCA_018852615.1_HG002.pri.mat.f1_v2 445 3,060,609,068 6 372 53.50
94 human (NA24385.pat 2021) Homo sapiens GCA_018852605.1_HG002.alt.pat.f1_v2 610 2,958,633,312 5 256 53.64
95 human (NA24631.mat 2021) Homo sapiens GCA_018506965.1_HG005.pri.mat.f1_v2 503 3,029,694,013 4 156 53.07
96 human (NA24631.pat 2021) Homo sapiens GCA_018506945.1_HG005.alt.pat.f1_v2 682 2,937,775,295 2 131 53.22
TOTALS:total assembly count 96 39,216 289,455,462,520 315 2,479,917  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 215 assemblies assembly stats track stats
Mammals 560 assemblies assembly stats track stats
Birds 377 assemblies assembly stats track stats
Fishes 401 assemblies assembly stats track stats
other vertebrates 239 assemblies assembly stats track stats
Invertebrates 1007 assemblies assembly stats track stats
Plants 301 assemblies assembly stats track stats
Fungi 858 assemblies assembly stats track stats
Viruses 283 assemblies assembly stats track stats
Bacteria 104 assemblies assembly stats track stats
legacy/superseded 515 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 952 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 702 assemblies assembly stats track stats