Bacteria Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Acinetobacter baumannii (17978UN 2021) Acinetobacter baumannii GCF_019356215.1_ASM1935621v1 4 4,075,785 0 0 11.90
2 Acinetobacter baumannii (ATCC 17978 2021) Acinetobacter baumannii ATCC 17978 GCA_902728005.1_Acinetobacter_baumannii_ATCC17978 4 4,082,469 0 0 11.47
3 Acinetobacter baumannii (ATCC 19606 2016) Acinetobacter baumannii GCA_900011295.1_ATCC19606_assembly 114 3,974,239 2 2 11.48
4 Actinobacillus pleuropneumoniae serovar 5b (L20 2007) Actinobacillus pleuropneumoniae serovar 5b str. L20 GCA_000015885.1_ASM1588v1 1 2,274,482 0 0 9.69
5 Anaplasma phagocytophilum str. (HGE1 2013) Anaplasma phagocytophilum str. HGE1 GCA_000478425.1_ASM47842v1 2 1,469,600 0 0 6.03
6 Arthrobacter sp. SLBN-53 (NRRL B-3805 2016) Arthrobacter sp. SLBN-53 GCA_001580405.1_ASM158040v1 1 5,421,338 0 0 18.83
7 Bacillus mojavensis (PS17 2020) Bacillus mojavensis GCA_016413745.1_ASM1641374v1 1 4,083,759 0 0 11.33
8 Bacillus subtilis strain 168 Bacillus subtilis subsp. subtilis str. 168 GCF_000009045.1_ASM904v1 1 4,215,606 0 0 11.04
9 Bacillus subtilis (NCD-2 2017) Bacillus subtilis subsp. subtilis GCA_002556525.1_ASM255652v1 1 4,192,617 0 0 11.00
10 Burkholderia multivorans (ATCC 17616 2007) Burkholderia multivorans ATCC 17616 GCA_000018505.1_ASM1850v1 4 7,008,622 0 0 35.10
11 Clostridium beijerinckii (DSM 791 2021) Clostridium beijerinckii GCF_018223745.1_ASM1822374v1 2 5,950,247 0 0 22.07
12 Clostridium butyricum (DSM 10702 2020) Clostridium butyricum GCA_014131795.1_ASM1413179v1 4 4,705,596 0 0 25.33
13 Clostridium saccharoperbutylacetonicum N1-4HMT (ATCC 27021 2013) Clostridium saccharoperbutylacetonicum N1-4(HMT) GCF_000334435.1_CloSac1.0 210 6,569,628 2 2 22.95
14 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 DOE-JGI) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000429805.1_ASM42980v1 44 3,022,704 1 777 21.37
15 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Nanjing Univ. of Technology) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000359585.1_ATCC25755 76 3,010,696 0 0 21.29
16 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2015 Tokyo Univ. Marine Science and Technology) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCA_000974305.1_ASM97430v1 697 2,528,478 7 7 18.26
17 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Univ. Cattolica del Sacro Cuore) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000392375.2_ASM39237v2 174 3,001,927 0 0 21.17
18 Clostridium tyrobutyricum (KCTC 5387 2016 KAIST) Clostridium tyrobutyricum GCF_001642655.1_ASM164265v1 2 3,134,437 0 0 21.33
19 Corynebacterium glutamicum (ATCC 13032 2004) Corynebacterium glutamicum ATCC 13032 GCA_000011325.1_ASM1132v1 1 3,309,401 0 0 4.27
20 Desulfovibrio desulfuricans (DSM 642 2013) Desulfovibrio desulfuricans DSM 642 GCA_000420465.1_ASM42046v1 20 3,391,683 0 0 12.14
21 Desulfovibrio vulgaris str. (Hildenborough 2004) Desulfovibrio vulgaris str. Hildenborough GCA_000195755.1_ASM19575v1 2 3,773,159 0 0 8.94
22 E. coli (B C2566 2016) Escherichia coli B GCF_001559615.2_ASM155961v2 1 4,478,958 0 0 7.37
23 E. coli (B C3029 2016) Escherichia coli B GCF_001559635.1_ASM155963v1 1 4,569,185 0 0 6.98
24 E. coli (BE104 2019) Escherichia coli GCF_005890115.1_ASM589011v1 1 4,775,122 0 0 7.40
25 E. coli (BL21(DE3) 2010) Escherichia coli BL21(DE3) GCA_000022665.2_ASM2266v1 1 4,558,953 0 0 7.35
26 E. coli (K-12 BW25113 2014 refseq) Escherichia coli BW25113 GCF_000750555.1_ASM75055v1 1 4,631,469 0 0 7.44
27 E. coli (K-12 C3026 2016) Escherichia coli K-12 GCF_001559675.1_ASM155967v1 2 4,959,179 0 0 7.36
28 E. coli (K-12 DHB4 2016) Escherichia coli K-12 GCF_001559655.1_ASM155965v1 2 4,779,803 0 0 7.59
29 E. coli (K-12 MG1655 2013) Escherichia coli str. K-12 substr. MG1655 GCF_000005845.2_ASM584v2 1 4,641,652 0 0 7.53
30 E. coli (Nissle 1917 2014) Escherichia coli Nissle 1917 GCA_000714595.1_ASM71459v1 1 5,441,200 79 79 6.52
31 Janthinobacterium (BJB312 2017) Janthinobacterium sp. BJB312 GCA_002735715.1_ASM273571v1 38 6,224,897 0 0 25.50
32 Janthinobacterium (BJB1 2017) Janthinobacterium sp. BJB1 GCA_002735775.2_ASM273577v2 56 6,353,648 0 0 27.37
33 Klebsiella aerogenes (KCTC 2190 2011) Klebsiella aerogenes KCTC 2190 GCA_000215745.1_ASM21574v1 1 5,280,350 1 1 14.02
34 Klebsiella pneumoniae (ATCC BAA-2146 2016) Klebsiella pneumoniae GCA_000364385.3_ASM36438v3 5 5,781,501 0 0 16.45
35 Lacticaseibacillus paracasei (LC2W 2011) Lacticaseibacillus paracasei GCA_000194785.1_ASM19478v1 2 3,077,434 0 0 5.82
36 Lactobacillus kefiranofaciens (KR 2017) Lactobacillus kefiranofaciens GCA_002276565.1_ASM227656v1 97 2,133,836 0 0 11.82
37 Lactobacillus kefiranofaciens (ATCC 43761 2016) Lactobacillus kefiranofaciens GCA_900103655.1_IMG-taxon_2597490363_annotated_assembly 84 2,281,952 2 135 11.35
38 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2014) Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_000615685.1_ASM61568v1 123 2,254,088 0 0 11.60
39 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2015) Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_001435275.1_ASM143527v1 133 2,257,219 10 87 11.64
40 Lactobacillus kefiranofaciens (ASM143419v1 JCM 8572 DSM 10550 2015) Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001434195.1_ASM143419v1 138 2,085,781 6 283 11.47
41 Lactobacillus kefiranofaciens (ASM131133v1 JCM 8572 JSM 10550 2015) Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001311335.1_ASM131133v1 104 2,065,566 0 0 11.52
42 Lactobacillus kefiranofaciens (LKK75 2019) Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_009184665.1_ASM918466v1 1 2,316,165 0 0 11.35
43 Lactobacillus kefiranofaciens (ZW3 2011) Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_000214785.1_ASM21478v1 3 2,354,088 0 0 11.08
44 Lactococcus lactis (IL1403 2018) Lactococcus lactis GCA_003722275.1_ASM372227v1 1 2,365,672 1 1 16.62
45 Leuconostoc citreum (KM20 2008) Leuconostoc citreum KM20 GCA_000026405.1_ASM2640v1 5 1,896,614 0 0 8.35
46 Limosilactobacillus fermentum AGR1485 Limosilactobacillus fermentum GCF_011032765.1_ASM1103276v1 1 2,226,862 0 0 5.46
47 Limosilactobacillus fermentum AGR1487 Limosilactobacillus fermentum GCF_011032745.1_ASM1103274v1 1 1,939,032 0 0 4.69
48 Limosilactobacillus fermentum SRCM 103290 Limosilactobacillus fermentum GCF_004063635.1_ASM406363v1 1 2,120,877 0 0 4.50
49 Limosilactobacillus fermentum YL-11 Limosilactobacillus fermentum GCF_003860425.1_ASM386042v1 1 1,908,534 0 0 5.80
50 Lysinibacillus sphaericus (C3-41 2008) Lysinibacillus sphaericus C3-41 GCA_000017965.1_ASM1796v1 2 4,817,463 0 0 12.53
51 Methylorubrum extorquens (CM4 2008) Methylorubrum extorquens CM4 GCA_000021845.1_ASM2184v1 3 6,180,732 0 0 22.75
52 Mycobacterium avium (hominissuis A5 2014) Mycobacterium avium subsp. hominissuis A5 GCF_000696715.1_Maq_reference_guided_assembly 50 4,870,506 0 0 27.36
53 Mycobacterium palustre (DSM 44572 2017) Mycobacterium palustre GCF_002101785.1_ASM210178v1 158 6,037,522 0 0 24.93
54 Mycobacterium sp. (VKM Ac-1817D 2014) Mycobacterium sp. VKM Ac-1817D GCA_000416365.2_ASM41636v2 1 6,324,222 0 0 17.13
55 Mycobacterium tuberculosis (ASM19595v2 H37Rv 2013) Mycobacterium tuberculosis H37Rv GCF_000195955.2_ASM19595v2 1 4,411,532 0 0 17.70
56 Mycobacterium tuberculosis (ASM27773v2 H37Rv 2013) Mycobacterium tuberculosis H37Rv GCA_000277735.2_ASM27773v2 1 4,411,709 0 0 17.72
57 Neisseria meningitidis (Z2491 2003) Neisseria meningitidis Z2491 GCA_000009105.1_ASM910v1 1 2,184,406 0 0 15.36
58 Nitratireductor (SY7 2020) Nitratireductor mangrovi GCA_007922615.2_ASM792261v2 1 4,855,325 0 0 19.65
59 Nitrosomonas europaea (ATCC 19718 2003) Nitrosomonas europaea ATCC 19718 GCA_000009145.1_ASM914v1 1 2,812,094 0 0 6.12
60 Pectobacterium brasiliense (1692 2020) Pectobacterium brasiliense GCA_009873295.1_ASM987329v1 1 4,851,982 0 0 7.97
61 Plasmodium malariae (2016) Plasmodium malariae GCF_900090045.1_PmUG01 62 33,612,066 0 0 54.84
62 Pseudomonas aeruginosa (PAO1 2006) Pseudomonas aeruginosa PAO1 GCF_000006765.1_ASM676v1 1 6,264,404 0 0 23.71
63 Pseudomonas fluorescens (SBW25 2009) Pseudomonas fluorescens SBW25 GCF_000009225.2_ASM922v1 1 6,722,539 0 0 14.26
64 Rhodococcus erythropolis (CCM2595 2013) Rhodococcus erythropolis CCM2595 GCA_000454045.1_ASM45404v1 2 6,371,421 0 0 12.06
65 Salmonella enterica (Typhimurium LT2 2016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GCF_000006945.2_ASM694v2 2 4,951,383 0 0 9.55
66 Salmonella enterica subsp. enterica serovar Typhimurium str. (14028S 2009) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GCA_000022165.1_ASM2216v1 2 4,964,097 0 0 9.65
67 Shigella flexneri 5a (M90T 2019) Shigella flexneri 5a str. M90T GCA_004799585.1_ASM479958v1 2 4,828,909 0 0 7.89
68 Staphylococcus aureus (JE2 2017) Staphylococcus aureus GCA_002085525.1_ASM208552v1 1 2,874,399 0 0 16.38
69 Starmerella bacillaris (NP2 2017) Starmerella bacillaris GCA_002270425.1_ASM227042v1 117 9,311,634 145 6,721 10.93
70 Streptomyces bottropensis (ATCC 25435 2013) Streptomyces bottropensis ATCC 25435 GCA_000383595.1_ASM38359v1 1 8,955,726 7 304 23.03
71 Stutzerimonas degradans (XL272 2019) Stutzerimonas degradans GCA_009740185.1_ASM974018v1 1 3,925,175 0 0 20.70
TOTALS:total assembly count 71 2,583 327,495,356 263 8,399  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 195 assemblies assembly stats track stats
Mammals 417 assemblies assembly stats track stats
Birds 274 assemblies assembly stats track stats
Fishes 285 assemblies assembly stats track stats
other vertebrates 119 assemblies assembly stats track stats
Invertebrates 617 assemblies assembly stats track stats
Plants 242 assemblies assembly stats track stats
Fungi 598 assemblies assembly stats track stats
Viruses 264 assemblies assembly stats track stats
Bacteria 71 assemblies assembly stats track stats
legacy/superseded 352 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 445 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats