Bacteria Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Acinetobacter baumannii (17978UN 2021) Acinetobacter baumannii GCF_019356215.1_ASM1935621v1 4 4,075,785 0 0 11.90
2 Bacillus subtilis strain 168 Bacillus subtilis subsp. subtilis str. 168 GCF_000009045.1_ASM904v1 1 4,215,606 0 0 11.04
3 E. coli (B C2566 2016) Escherichia coli B GCF_001559615.2_ASM155961v2 1 4,478,958 0 0 7.37
4 E. coli (B C3029 2016) Escherichia coli B GCF_001559635.1_ASM155963v1 1 4,569,185 0 0 6.98
5 E. coli (BE104 2019) Escherichia coli GCF_005890115.1_ASM589011v1 1 4,775,122 0 0 7.40
6 E. coli (K-12 BW25113 2014 refseq) Escherichia coli BW25113 GCF_000750555.1_ASM75055v1 1 4,631,469 0 0 7.44
7 E. coli (K-12 C3026 2016) Escherichia coli K-12 GCF_001559675.1_ASM155967v1 2 4,959,179 0 0 7.36
8 E. coli (K-12 DHB4 2016) Escherichia coli K-12 GCF_001559655.1_ASM155965v1 2 4,779,803 0 0 7.59
9 E. coli (K-12 MG1655 2013) Escherichia coli str. K-12 substr. MG1655 GCF_000005845.2_ASM584v2 1 4,641,652 0 0 7.53
10 Limosilactobacillus fermentum YL-11 Limosilactobacillus fermentum GCF_003860425.1_ASM386042v1 1 1,908,534 0 0 5.80
11 Limosilactobacillus fermentum SRCM 103290 Limosilactobacillus fermentum GCF_004063635.1_ASM406363v1 1 2,120,877 0 0 4.50
12 Limosilactobacillus fermentum AGR1487 Limosilactobacillus fermentum GCF_011032745.1_ASM1103274v1 1 1,939,032 0 0 4.69
13 Limosilactobacillus fermentum AGR1485 Limosilactobacillus fermentum GCF_011032765.1_ASM1103276v1 1 2,226,862 0 0 5.46
14 Mycobacterium avium (hominissuis A5 2014) Mycobacterium avium subsp. hominissuis A5 GCF_000696715.1_Maq_reference_guided_assembly 50 4,870,506 0 0 27.36
15 Mycobacterium palustre (DSM 44572 2017) Mycobacterium palustre GCF_002101785.1_ASM210178v1 158 6,037,522 0 0 24.93
16 Mycobacterium tuberculosis (H37Rv 2013) Mycobacterium tuberculosis H37Rv GCF_000195955.2_ASM19595v2 1 4,411,532 0 0 17.70
17 Plasmodium malariae (2016) Plasmodium malariae GCF_900090045.1_PmUG01 62 33,612,066 0 0 54.84
18 Pseudomonas aeruginosa (PAO1 2006) Pseudomonas aeruginosa PAO1 GCF_000006765.1_ASM676v1 1 6,264,404 0 0 23.71
19 Pseudomonas fluorescens (SBW25 2009) Pseudomonas fluorescens SBW25 GCF_000009225.2_ASM922v1 1 6,722,539 0 0 14.26
20 Salmonella enterica (Typhimurium LT2 2016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GCF_000006945.2_ASM694v2 2 4,951,383 0 0 9.55
TOTALS:total assembly count 20 293 116,192,016 0 0  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 60 assemblies assembly stats track stats
Mammals 356 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 76 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 175 assemblies assembly stats track stats
Fungi 464 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 20 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 295 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats