Bacteria Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of bacteria only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Acetivibrio thermocellus DSM 2360 (LQRI 2016) Acetivibrio thermocellus DSM 2360 GCF_001692755.1_ASM169275v1 1 3,577,579 0 0 13.17
2 Acinetobacter baumannii (17978UN 2021) Acinetobacter baumannii GCF_019356215.1_ASM1935621v1 4 4,075,785 0 0 11.90
3 Acinetobacter baumannii (ATCC 17978 2007) Acinetobacter baumannii ATCC 17978 GCF_000015425.1_ASM1542v1 3 4,001,457 1 1 11.87
4 Acinetobacter baumannii (ATCC 17978 2021) Acinetobacter baumannii ATCC 17978 GCA_902728005.1_Acinetobacter_baumannii_ATCC17978 4 4,082,469 0 0 11.47
5 Acinetobacter baumannii (ATCC 17978-mff 2015) Acinetobacter baumannii GCF_001077675.1_ASM107767v1 2 4,006,698 0 0 11.83
6 Acinetobacter baumannii (ATCC 19606 2016) Acinetobacter baumannii GCA_900011295.1_ATCC19606_assembly 114 3,974,239 2 2 11.48
7 Actinobacillus pleuropneumoniae serovar 5b (L20 2007) Actinobacillus pleuropneumoniae serovar 5b str. L20 GCA_000015885.1_ASM1588v1 1 2,274,482 0 0 9.69
8 Allokutzneria albata (DSM 44149 2016) Allokutzneria albata GCF_900103775.1_IMG-taxon_2634166198_annotated_assembly 1 8,565,619 1 100 22.28
9 Anaplasma phagocytophilum str. (HGE1 2013) Anaplasma phagocytophilum str. HGE1 GCA_000478425.1_ASM47842v1 2 1,469,600 0 0 6.03
10 Arthrobacter sp. SLBN-53 (NRRL B-3805 2016) Mycolicibacterium neoaurum GCA_001580405.1_ASM158040v1 1 5,421,338 0 0 18.83
11 Bacillus mojavensis (PS17 2020) Bacillus mojavensis GCA_016413745.1_ASM1641374v1 1 4,083,759 0 0 11.33
12 Bacillus subtilis (NCD-2 2017) Bacillus subtilis subsp. subtilis GCA_002556525.1_ASM255652v1 1 4,192,617 0 0 11.00
13 Bacillus subtilis strain 168 Bacillus subtilis subsp. subtilis str. 168 GCF_000009045.1_ASM904v1 1 4,215,606 0 0 11.04
14 Bdellovibrio bacteriovorus (HD100 2004) Bdellovibrio bacteriovorus HD100 GCF_000196175.1_ASM19617v1 1 3,782,950 0 0 6.35
15 Burkholderia multivorans (ATCC 17616 2007) Burkholderia multivorans ATCC 17616 GCA_000018505.1_ASM1850v1 4 7,008,622 0 0 35.10
16 Campylobacter jejuni subsp. jejuni ATCC 700819 (NCTC 11168 2003) Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 GCF_000009085.1_ASM908v1 1 1,641,481 0 0 28.47
17 Chlamydia trachomatis (L2/434/Bu 2008) Chlamydia trachomatis L2/434/Bu GCF_000068585.1_ASM6858v1 1 1,038,842 0 0 8.82
18 Clostridium beijerinckii (DSM 791 2021) Clostridium beijerinckii GCF_018223745.1_ASM1822374v1 2 5,950,247 0 0 22.07
19 Clostridium butyricum (DSM 10702 2020) Clostridium butyricum GCA_014131795.1_ASM1413179v1 4 4,705,596 0 0 25.33
20 Clostridium saccharoperbutylacetonicum N1-4HMT (ATCC 27021 2013) Clostridium saccharoperbutylacetonicum N1-4(HMT) GCF_000334435.1_CloSac1.0 210 6,569,628 2 2 22.95
21 Clostridium tyrobutyricum (KCTC 5387 2016 KAIST) Clostridium tyrobutyricum GCF_001642655.1_ASM164265v1 2 3,134,437 0 0 21.33
22 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 DOE-JGI) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000429805.1_ASM42980v1 44 3,022,704 1 777 21.37
23 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Nanjing Univ. of Technology) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000359585.1_ATCC25755 76 3,010,696 0 0 21.29
24 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2013 Univ. Cattolica del Sacro Cuore) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCF_000392375.2_ASM39237v2 174 3,001,927 0 0 21.17
25 Clostridium tyrobutyricum ATCC 25755 (DSM 2637 JCM 11008 2015 Tokyo Univ. Marine Science and Technology) Clostridium tyrobutyricum DSM 2637 = ATCC 25755 = JCM 11008 GCA_000974305.1_ASM97430v1 697 2,528,478 7 7 18.26
26 Companilactobacillus crustorum (MN047 2017) Companilactobacillus crustorum GCF_001951175.1_ASM195117v1 3 2,316,479 0 0 12.48
27 Corynebacterium glutamicum (ATCC 13032 2004) Corynebacterium glutamicum ATCC 13032 GCA_000011325.1_ASM1132v1 1 3,309,401 0 0 4.27
28 Cupriavidus necator (H16 2019) Cupriavidus necator H16 GCF_004798725.1_ASM479872v1 3 7,414,561 0 0 25.89
29 cyanobacteria (ATCC 29133; PCC 73102 2008) Nostoc punctiforme PCC 73102 GCF_000020025.1_ASM2002v1 6 9,059,191 0 0 9.59
30 cyanobacteria (PCC 7942 2005) Synechococcus elongatus PCC 7942 = FACHB-805 GCF_000012525.1_ASM1252v1 2 2,742,269 0 0 12.56
31 cyanobacteria (SAG 85.79 2020 genbank) Limnospira fusiformis SAG 85.79 GCA_012516315.1_ASM1251631v1 1 6,423,694 0 0 13.98
32 cyanobacteria (SAG 85.79 2020 refseq) Limnospira fusiformis SAG 85.79 GCF_012516315.1_ASM1251631v1 1 6,423,694 0 0 13.98
33 Desulfovibrio desulfuricans (DSM 642 2013) Desulfovibrio desulfuricans DSM 642 GCA_000420465.1_ASM42046v1 20 3,391,683 0 0 12.14
34 Desulfovibrio vulgaris str. (Hildenborough 2004) Nitratidesulfovibrio vulgaris str. Hildenborough GCA_000195755.1_ASM19575v1 2 3,773,159 0 0 8.94
35 Dinoroseobacter shibae DSM 16493 (DFL 12 2007) Dinoroseobacter shibae DFL 12 = DSM 16493 GCF_000018145.1_ASM1814v1 6 4,417,868 0 0 16.64
36 E. coli (B C2566 2016) Escherichia coli B GCF_001559615.2_ASM155961v2 1 4,478,958 0 0 7.37
37 E. coli (B C3029 2016) Escherichia coli B GCF_001559635.1_ASM155963v1 1 4,569,185 0 0 6.98
38 E. coli (BE104 2019) Escherichia coli GCF_005890115.1_ASM589011v1 1 4,775,122 0 0 7.40
39 E. coli (BL21(DE3) 2010) Escherichia coli BL21(DE3) GCA_000022665.2_ASM2266v1 1 4,558,953 0 0 7.35
40 E. coli (K-12 BW25113 2014 refseq) Escherichia coli BW25113 GCF_000750555.1_ASM75055v1 1 4,631,469 0 0 7.44
41 E. coli (K-12 C3026 2016) Escherichia coli K-12 GCF_001559675.1_ASM155967v1 2 4,959,179 0 0 7.36
42 E. coli (K-12 DHB4 2016) Escherichia coli K-12 GCF_001559655.1_ASM155965v1 2 4,779,803 0 0 7.59
43 E. coli (K-12 MG1655 2013 refseq) Escherichia coli str. K-12 substr. MG1655 GCF_000005845.2_ASM584v2 1 4,641,652 0 0 7.53
44 E. coli (Nissle 1917 2014) Escherichia coli Nissle 1917 GCA_000714595.1_ASM71459v1 1 5,441,200 79 79 6.52
45 Ehrlichia chaffeensis str. (Arkansas 2006) Ehrlichia chaffeensis str. Arkansas GCF_000013145.1_ASM1314v1 1 1,176,248 0 0 15.33
46 Gluconacetobacter diazotrophicus PA1 5 (PAl 5; ATCC 49037 2008) Gluconacetobacter diazotrophicus PA1 5 GCF_000021325.1_ASM2132v1 2 3,914,947 0 0 20.50
47 Heyndrickxia coagulans DSM 1 (ATCC 7050 2015) Heyndrickxia coagulans DSM 1 = ATCC 7050 GCF_000832905.1_ASM83290v1 1 3,366,995 0 0 12.30
48 Janthinobacterium (BJB1 2017) Janthinobacterium sp. BJB1 GCA_002735775.2_ASM273577v2 56 6,353,648 0 0 27.37
49 Janthinobacterium (BJB312 2017) Janthinobacterium sp. BJB312 GCA_002735715.1_ASM273571v1 38 6,224,897 0 0 25.50
50 Klebsiella aerogenes (KCTC 2190 2011) Klebsiella aerogenes KCTC 2190 GCA_000215745.1_ASM21574v1 1 5,280,350 1 1 14.02
51 Klebsiella pneumoniae (ATCC BAA-2146 2016) Klebsiella pneumoniae GCA_000364385.3_ASM36438v3 5 5,781,501 0 0 16.45
52 Lacticaseibacillus paracasei (LC2W 2011) Lacticaseibacillus paracasei GCA_000194785.1_ASM19478v1 2 3,077,434 0 0 5.82
53 Lactobacillus kefiranofaciens (1207 2020) Lactobacillus kefiranofaciens GCF_014656585.1_ASM1465658v1 3 2,173,634 0 0 10.47
54 Lactobacillus kefiranofaciens (ASM131133v1 JCM 8572 JSM 10550 2015) Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001311335.1_ASM131133v1 104 2,065,566 0 0 11.52
55 Lactobacillus kefiranofaciens (ASM143419v1 JCM 8572 DSM 10550 2015) Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572 GCA_001434195.1_ASM143419v1 138 2,085,781 6 283 11.47
56 Lactobacillus kefiranofaciens (ATCC 43761 2016) Lactobacillus kefiranofaciens GCA_900103655.1_IMG-taxon_2597490363_annotated_assembly 84 2,281,952 2 135 11.35
57 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2014) Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_000615685.1_ASM61568v1 123 2,254,088 0 0 11.60
58 Lactobacillus kefiranofaciens (JCM 6985 DSM 5016 2015) Lactobacillus kefiranofaciens subsp. kefiranofaciens DSM 5016 = JCM 6985 GCA_001435275.1_ASM143527v1 133 2,257,219 10 87 11.64
59 Lactobacillus kefiranofaciens (KR 2017) Lactobacillus kefiranofaciens GCA_002276565.1_ASM227656v1 97 2,133,836 0 0 11.82
60 Lactobacillus kefiranofaciens (LKK75 2019) Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_009184665.1_ASM918466v1 1 2,316,165 0 0 11.35
61 Lactobacillus kefiranofaciens (ZW3 2011) Lactobacillus kefiranofaciens subsp. kefiranofaciens GCA_000214785.1_ASM21478v1 3 2,354,088 0 0 11.08
62 Lactococcus lactis (IL1403 2018) Lactococcus lactis GCA_003722275.1_ASM372227v1 1 2,365,672 1 1 16.62
63 Legionella pneumophila (Leg01/16 2013 genbank) Legionella pneumophila Leg01/16 GCA_000468235.1_Legionella_pneumophila_Leg01_16 581 3,658,226 0 0 13.14
64 Legionella pneumophila (Leg01/16 2013 refseq) Legionella pneumophila Leg01/16 GCF_000468235.1_Legionella_pneumophila_Leg01_16 581 3,658,226 0 0 13.14
65 Legionella pneumophila (Lpm7613 Lpm7613 2016) Legionella pneumophila GCF_900092465.1_Lpm7613_v1 2 3,391,443 0 0 13.32
66 Leuconostoc citreum (KM20 2008) Leuconostoc citreum KM20 GCA_000026405.1_ASM2640v1 5 1,896,614 0 0 8.35
67 Limosilactobacillus fermentum AGR1485 Limosilactobacillus fermentum GCF_011032765.1_ASM1103276v1 1 2,226,862 0 0 5.46
68 Limosilactobacillus fermentum AGR1487 Limosilactobacillus fermentum GCF_011032745.1_ASM1103274v1 1 1,939,032 0 0 4.69
69 Limosilactobacillus fermentum SRCM 103290 Limosilactobacillus fermentum GCF_004063635.1_ASM406363v1 1 2,120,877 0 0 4.50
70 Limosilactobacillus fermentum YL-11 Limosilactobacillus fermentum GCF_003860425.1_ASM386042v1 1 1,908,534 0 0 5.80
71 Lysinibacillus sphaericus (C3-41 2008) Lysinibacillus sphaericus C3-41 GCA_000017965.1_ASM1796v1 2 4,817,463 0 0 12.53
72 Methylococcus capsulatus str. (Bath 2005) Methylococcus capsulatus str. Bath GCF_000008325.1_ASM832v1 1 3,304,561 1 1 11.24
73 Methylorubrum extorquens (CM4 2008) Methylorubrum extorquens CM4 GCA_000021845.1_ASM2184v1 3 6,180,732 0 0 22.75
74 Mycobacterium avium (hominissuis A5 2014) Mycobacterium avium subsp. hominissuis A5 GCF_000696715.1_Maq_reference_guided_assembly 50 4,870,506 0 0 27.36
75 Mycobacterium palustre (DSM 44572 2017) Mycobacterium palustre GCF_002101785.1_ASM210178v1 158 6,037,522 0 0 24.93
76 Mycobacterium sp. (VKM Ac-1817D 2014) Mycobacterium sp. VKM Ac-1817D GCA_000416365.2_ASM41636v2 1 6,324,222 0 0 17.13
77 Mycobacterium tuberculosis (ASM19595v2 H37Rv 2013) Mycobacterium tuberculosis H37Rv GCF_000195955.2_ASM19595v2 1 4,411,532 0 0 17.70
78 Mycobacterium tuberculosis (ASM27773v2 H37Rv 2013) Mycobacterium tuberculosis H37Rv GCA_000277735.2_ASM27773v2 1 4,411,709 0 0 17.72
79 Neisseria meningitidis (Z2491 2003) Neisseria meningitidis Z2491 GCA_000009105.1_ASM910v1 1 2,184,406 0 0 15.36
80 Nitratireductor (SY7 2020) Nitratireductor mangrovi GCA_007922615.2_ASM792261v2 1 4,855,325 0 0 19.65
81 Nitrosomonas europaea (ATCC 19718 2003) Nitrosomonas europaea ATCC 19718 GCA_000009145.1_ASM914v1 1 2,812,094 0 0 6.12
82 Paenibacillus larvae subsp. larvae (Eric_IV 2018) Paenibacillus larvae subsp. larvae GCF_002951935.1_ASM295193v1 3 4,378,174 0 0 7.08
83 Pectobacterium brasiliense (1692 2020) Pectobacterium brasiliense GCA_009873295.1_ASM987329v1 1 4,851,982 0 0 7.97
84 Pimelobacter simplex (VKM Ac-2033D 2014) Pimelobacter simplex GCF_000785495.1_ASM78549v1 1 5,637,360 0 0 27.64
85 Plasmodium malariae (2016) Plasmodium malariae GCF_900090045.1_PmUG01 62 33,612,066 0 0 54.84
86 Pseudomonas aeruginosa (PAO1 2006) Pseudomonas aeruginosa PAO1 GCF_000006765.1_ASM676v1 1 6,264,404 0 0 23.71
87 Pseudomonas fluorescens (SBW25 2009) Pseudomonas fluorescens SBW25 GCF_000009225.2_ASM922v1 1 6,722,539 0 0 14.26
88 Rhodobacter capsulatus (SB 1003 2010) Rhodobacter capsulatus SB 1003 GCF_000021865.1_ASM2186v1 2 3,871,920 0 0 23.54
89 Rhodococcus erythropolis (CCM2595 2013) Rhodococcus erythropolis CCM2595 GCA_000454045.1_ASM45404v1 2 6,371,421 0 0 12.06
90 Rhodococcus qingshengii (IGTS8 2019) Rhodococcus qingshengii GCF_006384225.1_ASM638422v1 25 7,010,185 27 78,764 12.31
91 Salmonella enterica (Typhimurium LT2 2016) Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 GCF_000006945.2_ASM694v2 2 4,951,383 0 0 9.55
92 Salmonella enterica subsp. enterica serovar Typhimurium str. (14028S 2009) Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S GCA_000022165.1_ASM2216v1 2 4,964,097 0 0 9.65
93 Shewanella oneidensis (MR-1 2012) Shewanella oneidensis MR-1 GCF_000146165.2_ASM14616v2 2 5,131,424 8 8 4.55
94 Shigella flexneri 2a str. (301 2011) Shigella flexneri 2a str. 301 GCF_000006925.2_ASM692v2 2 4,828,820 1 6 8.31
95 Shigella flexneri 5a (M90T 2019) Shigella flexneri 5a str. M90T GCA_004799585.1_ASM479958v1 2 4,828,909 0 0 7.89
96 Sodalis glossinidius str. '' (morsitans 2006) Sodalis glossinidius str. 'morsitans' GCF_000010085.1_ASM1008v1 4 4,292,502 0 0 10.85
97 Staphylococcus aureus (JE2 2017) Staphylococcus aureus GCA_002085525.1_ASM208552v1 1 2,874,399 0 0 16.38
98 Starmerella bacillaris (NP2 2017) Starmerella bacillaris GCA_002270425.1_ASM227042v1 117 9,311,634 145 6,721 10.93
99 Streptococcus pneumoniae (D39V 2018) Streptococcus pneumoniae GCF_003003495.1_ASM300349v1 1 2,046,572 0 0 9.45
100 Streptomyces ambofaciens (ATCC 23877 2015) Streptomyces ambofaciens ATCC 23877 GCF_001267885.1_ASM126788v1 2 8,393,598 0 0 23.88
101 Streptomyces ambofaciens (DSM 40697 2016) Streptomyces ambofaciens GCF_001632865.1_ASM163286v1 1 8,137,876 0 0 24.03
102 Streptomyces avermitilis NBRC 14893 (MA-4680 2016) Streptomyces avermitilis MA-4680 = NBRC 14893 GCF_000009765.2_ASM976v2 2 9,119,895 0 0 22.19
103 Streptomyces bottropensis (ATCC 25435 2013) Streptomyces bottropensis ATCC 25435 GCA_000383595.1_ASM38359v1 1 8,955,726 7 304 23.03
104 Streptomyces curacoi (DSM 40107 2016) Streptomyces curacoi GCF_001513975.1_ASM151397v1 31 8,412,249 22 10,582 22.27
105 Streptomyces mobaraensis (DSM 40587 2021) Streptomyces mobaraensis GCF_020099395.1_ASM2009939v1 2 7,668,063 0 0 28.89
106 Streptomyces parvulus (2297 2016) Streptomyces parvulus GCF_001660045.1_ASM166004v1 2 7,766,531 0 0 26.04
107 Stutzerimonas degradans (XL272 2019) Stutzerimonas degradans GCA_009740185.1_ASM974018v1 1 3,925,175 0 0 20.70
TOTALS:total assembly count 107 3,867 504,247,187 324 97,861  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 217 assemblies assembly stats track stats
Mammals 563 assemblies assembly stats track stats
Birds 383 assemblies assembly stats track stats
Fishes 412 assemblies assembly stats track stats
other vertebrates 248 assemblies assembly stats track stats
Invertebrates 1099 assemblies assembly stats track stats
Plants 303 assemblies assembly stats track stats
Fungi 899 assemblies assembly stats track stats
Viruses 286 assemblies assembly stats track stats
Bacteria 107 assemblies assembly stats track stats
legacy/superseded 521 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 952 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats
BRC - BRC Analytics - Bioinformatics Research Center 769 assemblies assembly stats track stats