Plants Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of plants only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 adzuki bean Vigna angularis GCF_001190045.1_Vigan1.1 37,375 467,300,602 21,264 16,984,597 36.08
2 almond Prunus dulcis GCF_902201215.1_ALMONDv2 692 227,756,880 6,531 3,915,731 26.10
3 African oil palm Elaeis guineensis GCF_000442705.1_EG5 40,061 1,535,178,229 166,490 478,075,098 30.77
4 algarrobo blanco Prosopis alba GCF_004799145.1_ASM479914v1 6,087 707,161,903 0 0 38.30
5 apple Malus domestica GCF_002114115.1_ASM211411v1 807 703,358,299 7,264 77,686,614 45.18
6 Barbados nut Jatropha curcas GCF_014843425.1_RJC1_Hi-C 1,232 266,964,007 2,151 1,075,578 33.35
7 barrel medic (2014) Medicago truncatula GCF_000219495.3_MedtrA17_4.0 2,187 412,924,424 8,785 22,828,023 32.47
8 barrel medic (2018) Medicago truncatula GCF_003473485.1_MtrunA17r5.0-ANR 42 430,008,013 22 574,260 37.65
9 beet Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 40,246 566,550,431 30,962 48,760,827 30.12
10 bitter melon Momordica charantia GCF_001995035.1_ASM199503v1 1,052 285,613,949 109,310 22,117,873 30.98
11 black cottonwood Populus trichocarpa GCF_000002775.4_Pop_tri_v3 1,447 434,289,848 6,871 11,192,221 36.05
12 black tea Camellia sinensis GCF_004153795.1_AHAU_CSS_1 14,028 3,105,370,065 79,329 244,909,388 50.77
13 cacao Theobroma cacao GCF_000208745.1_Criollo_cocoa_genome_V2 431 324,879,930 11,787 18,504,642 33.24
14 cannabis Cannabis sativa GCF_900626175.2_cs10 221 876,147,649 843 139,568,290 47.72
15 capsicum Capsicum annuum GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 1,627 2,935,884,163 107,172 94,870,520 46.16
16 carrot Daucus carota subsp. sativus GCF_001625215.1_ASM162521v1 4,826 421,539,040 26,112 34,744,006 31.53
17 cassava Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 2,020 582,278,977 37,896 86,649,479 42.35
18 castor bean Ricinus communis GCF_000151685.1_JCVI_RCG_1.1 25,763 350,621,860 23,313 13,662,715 43.20
19 chickpea Cicer arietinum GCF_000331145.1_ASM33114v1 7,127 530,893,862 31,897 48,145,013 43.84
20 China rose Rosa chinensis GCF_002994745.1_RchiOBHm-V2 45 513,854,168 33 3,300 35.16
21 Chinese white pear Pyrus x bretschneideri GCF_000315295.1_Pbr_v1.0 2,182 508,550,595 24,384 10,955,858 34.16
22 clementine Citrus clementina GCF_000493195.1_Citrus_clementina_v1.0 1,398 301,364,702 7,564 6,235,590 33.93
23 club-mosses Selaginella moellendorffii GCF_000143415.4_v1.0 757 212,315,224 4,395 3,944,198 36.24
24 coffee C.arabica Coffea arabica GCF_003713225.1_Cara_1.0 2,833 1,094,446,607 691 2,272,354 41.68
25 coffee C.eugenioides Coffea eugenioides GCF_003713205.1_Ceug_1.0 3,530 699,903,961 3,482 14,570,140 38.92
26 common bean Phaseolus vulgaris GCF_000499845.1_PhaVulg1_0 708 521,076,696 40,860 48,622,872 37.30
27 common jujube Ziziphus jujuba GCF_000826755.1_ZizJuj_1.1 4,789 437,753,511 24,158 20,440,151 38.47
28 common sunflower Helianthus annuus GCF_002127325.2_HanXRQr2.0-SUNRISE 334 3,010,047,587 2,384 61,903,061 58.41
29 common tobacco Nicotiana tabacum GCF_000715135.1_Ntab-TN90 168,247 3,643,471,356 292,325 105,632,266 52.09
30 cork oak Quercus suber GCF_002906115.1_CorkOak1.0 23,344 953,298,670 26,139 19,161,636 36.11
31 cotton G.hirsutum Gossypium hirsutum GCF_000987745.1_ASM98774v1 9,148 2,189,140,010 48,742 62,279,885 52.02
32 cotton G.raimondii Gossypium raimondii GCF_000327365.1_Graimondii2_0 1,034 761,565,430 19,717 13,440,339 40.84
33 cowpea Vigna unguiculata GCF_004118075.1_ASM411807v1 682 519,066,764 68 2,720,798 41.67
34 crookneck pumpkin Cucurbita moschata GCF_002738365.1_Cmos_1.0 3,500 269,943,085 13,813 6,969,420 33.33
35 date palm (Khalas 2013) Phoenix dactylifera GCF_000413155.1_DPV01 80,317 556,480,649 64,723 48,937,941 27.53
36 date palm (Barhee BC4 2019) Phoenix dactylifera GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p 2,391 773,189,301 317 31,700 44.18
37 durian Durio zibethinus GCF_002303985.1_Duzib1.0 677 715,230,256 3,044 3,044,000 48.23
38 East African water lily Nymphaea colorata GCF_008831285.1_ASM883128v1 800 409,013,923 627 62,502 26.82
39 English walnut Juglans regia GCF_001411555.2_Walnut_2.0 24,757 572,946,670 1,051 603,869 33.96
40 pink shepherd's-purse Capsella rubella GCF_000375325.1_Caprub1_0 773 133,063,876 6,294 3,314,705 25.01
41 mulberry M.notabilis Morus notabilis GCF_000414095.1_ASM41409v2 31,301 320,378,613 15,541 16,272,868 34.55
42 Euphrates poplar Populus euphratica GCF_000495115.1_PopEup_1.0 9,615 496,032,534 23,174 23,344,727 43.31
43 false flax Camelina sativa GCF_000633955.1_Cs 37,212 641,356,059 74,428 45,052,215 27.36
44 field mustard Brassica rapa GCF_000309985.2_CAAS_Brap_v3.01 1,100 352,983,092 408 2,139,352 38.03
45 flowering plants Amborella trichopoda GCF_000471905.2_AMTR1.0 5,746 706,495,326 39,556 38,113,750 36.08
46 foxtail millet Setaria italica GCF_000263155.2_Setaria_italica_v2.0 337 405,868,399 6,442 4,823,979 29.32
47 garden asparagus Asparagus officinalis GCF_001876935.1_Aspof.V1 11,792 1,187,538,024 47,391 35,529,562 46.51
48 globe artichoke Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 8,283 725,197,765 310,473 70,818,977 39.50
49 goatgrass A.strangulata Aegilops tauschii subsp. strangulata GCF_002575655.1_Aet_v4.0 109,126 4,223,628,083 107,163 95,883,577 71.59
50 goatgrass A.tauschii Aegilops tauschii subsp. tauschii GCF_001957025.1_Aet_MR_1.0 68,537 4,327,320,947 0 0 73.17
51 green algae C.reinhardtii Chlamydomonas reinhardtii GCF_000002595.1_v3.0 1,558 120,404,952 10,425 14,994,990 30.46
52 green algae O.lucimarinus Ostreococcus lucimarinus CCE9901 GCF_000092065.1_ASM9206v1 21 13,204,888 0 0 34.92
53 green algae C.variabilis Chlorella variabilis GCF_000147415.1_v_1.0 414 46,159,512 3,543 3,945,106 37.21
54 green algae V.carteri Volvox carteri f. nagariensis GCF_000143455.1_v1.0 1,251 137,684,403 12,014 12,218,621 24.01
55 green algae O.tauri Ostreococcus tauri GCF_000214015.3_version_140606 22 13,032,761 477 9,540 27.92
56 green algae M.pusilla Micromonas pusilla CCMP1545 GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0 21 21,958,260 583 251,394 48.67
57 green algae C.subellipsoidea Coccomyxa subellipsoidea C-169 GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0 29 48,826,616 0 0 14.37
58 green algae M.neglectum Monoraphidium neglectum GCF_000611645.1_mono_v1 6,720 69,711,829 5,358 2,388,539 31.85
59 green algae A.protothecoides Auxenochlorella protothecoides GCF_000733215.1_ASM73321v1 374 22,924,637 1,012 1,068,446 20.32
60 green algae B.prasinos Bathycoccus prasinos GCF_002220235.1_ASM222023v1 21 15,074,320 20 36,198 21.94
61 green foxtail Setaria viridis GCF_005286985.1_Setaria_viridis_v2.0 15 395,869,604 61 610,000 29.12
62 Hall's panicgrass Panicum hallii GCF_002211085.1_PHallii_v3.1 291 535,889,049 736 7,360,000 45.31
63 Indian licorice Abrus precatorius GCF_003935025.1_Abrus_2018 160 347,230,236 184 8,618 38.92
64 Japanese apricot Prunus mume GCF_000346735.1_P.mume_V1.0 8,164 234,030,239 15,597 16,851,380 23.26
65 Japanese morning glory Ipomoea nil GCF_001879475.1_Asagao_1.1 3,418 735,230,855 449 211,647 46.65
66 Japanese rice Oryza sativa Japonica Group GCF_001433935.1_IRGSP-1.0 58 374,422,835 925 118,258 39.08
67 lettuce Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 11,453 2,384,188,817 350,251 174,654,477 53.12
68 lyrate rockcress Arabidopsis lyrata subsp. lyrata GCF_000004255.2_v.1.0 696 206,822,858 2,950 22,960,134 24.71
69 malo sina Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b 2,491 259,907,595 20,693 17,431,658 24.13
70 maize Zea mays GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 687 2,182,786,008 708 3,807,886 78.52
71 mosses Physcomitrella patens GCF_000002425.4_Phypa_V3 359 472,081,022 2,645 5,980,522 52.54
72 mung bean Vigna radiata var. radiata GCF_000741045.1_Vradiata_ver6 2,465 463,563,650 96,870 33,558,735 34.89
73 muskmelon Cucumis melo GCF_000313045.1_ASM31304v1 31,463 374,928,380 29,172 39,388,261 33.22
74 narrow-leaved blue lupine Lupinus angustifolius GCF_001865875.1_LupAngTanjil_v1.0 13,573 609,203,021 44,657 4,159,247 38.12
75 opium poppy Papaver somniferum GCF_003573695.1_ASM357369v1 34,381 2,715,530,335 31,183 5,407,606 55.85
76 orchid D.catenatum Dendrobium catenatum GCF_001605985.2_ASM160598v2 286,090 1,104,259,548 25,751 43,341,589 39.09
77 orchid P.equestris Phalaenopsis equestris GCF_001263595.1_ASM126359v1 89,584 1,064,200,343 98,814 80,500,320 42.22
78 papaya Carica papaya GCF_000150535.2_Papaya1.0 17,766 370,418,818 29,719 98,048,973 28.89
79 peach Prunus persica GCF_000346465.2_Prunus_persica_NCBIv2 192 227,569,171 2,368 2,772,483 28.75
80 peanut Arachis hypogaea GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 385 2,557,073,284 3,655 3,895,359 62.33
81 pigeon pea Cajanus cajan GCF_000340665.1_C.cajan_V1.0 36,536 592,970,700 36,387 34,435,295 39.25
82 pineapple Ananas comosus GCF_001540865.1_ASM154086v1 3,129 382,055,938 25,542 6,802,254 38.96
83 pistachio Pistacia vera GCF_008641045.1_PisVer_v2 1,865 671,280,010 16,367 1,075,147 36.35
84 pomegranate Punica granatum GCF_007655135.1_ASM765513v2 474 320,494,280 188 18,800 32.90
85 potato Solanum tuberosum GCF_000226075.1_SolTub_3.0 14,854 705,934,411 45,215 42,644,607 40.83
86 quinoa Chenopodium quinoa GCF_001683475.1_ASM168347v1 3,487 1,333,551,035 725 11,238,908 49.51
87 radish Raphanus sativus GCF_000801105.1_Rs1.0 10,676 426,614,037 28,041 54,594,507 26.67
88 rape Brassica napus GCF_000686985.2_Bra_napus_v2.0 1,471 976,190,593 32,639 68,842,306 32.93
89 riverbank grape Vitis riparia GCF_004353265.1_EGFV_Vit.rip_1.0 175 500,266,779 1,095 6,066,783 35.29
90 rose gum (BRASUZ1 2014) Eucalyptus grandis GCF_000612305.1_Egrandis1_0 4,951 691,429,809 27,773 50,634,931 27.36
91 rose gum (2021) Eucalyptus grandis GCF_016545825.1_ASM1654582v1 37 616,530,258 1,712 171,200 29.53
92 rose of Sharon Hibiscus syriacus GCF_006381635.1_ASM638163v2 1,789 1,826,930,762 2 2,809 51.74
93 rubber tree Hevea brasiliensis GCF_001654055.1_ASM165405v1 7,453 1,373,527,118 40,863 79,796,328 61.60
94 sacred lotus Nelumbo nucifera GCF_000365185.1_Chinese_Lotus_1.1 3,603 804,647,751 175,846 97,029,293 30.21
95 saltwater cress Eutrema salsugineum GCF_000478725.1_Eutsalg1_0 638 243,110,105 3,020 4,665,582 32.12
96 scented satinash Syzygium oleosum GCF_900635055.1_Sole10x-PRISCAF 19,039 431,290,611 11,862 44,627,900 25.36
97 sesame Sesamum indicum GCF_000512975.1_S_indicum_v1.0 16,236 275,059,498 9,940 4,572,828 31.03
98 silver malletwood Rhodamnia argentea GCF_900635035.1_Rarg10x-PRISCAF 15,781 414,815,504 7,529 26,068,170 25.40
99 silver poplar Populus alba GCF_005239225.1_ASM523922v1 1,287 416,985,780 0 0 38.38
100 sorghum Sorghum bicolor GCF_000003195.3_Sorghum_bicolor_NCBIv3 869 709,344,700 3,906 33,371,430 62.32
101 soybean Glycine max GCF_000004515.5_Glycine_max_v2.1 1,192 979,046,046 15,995 23,113,809 45.31
102 spider flower Tarenaya hassleriana GCF_000463585.1_ASM46358v1 12,249 249,929,577 24,824 30,779,355 31.65
103 spinach Spinacia oleracea GCF_002007265.1_ASM200726v1 78,263 869,946,296 137,086 38,941,226 52.85
104 spotted monkey flower Erythranthe guttata GCF_000504015.1_Mimgu1_0 2,212 322,166,964 15,528 21,004,488 40.62
105 stiff brome Brachypodium distachyon GCF_000005505.3_Brachypodium_distachyon_v3.0 11 271,298,618 27 423,960 21.35
106 sweet orange Citrus sinensis GCF_000317415.1_Csi_valencia_1.0 4,844 327,829,540 12,539 26,598,031 29.54
107 sweet cherry Prunus avium GCF_002207925.1_PAV_r1.0 10,148 272,361,615 22,628 25,563,184 25.22
108 switchgrass Panicum virgatum GCF_016808335.1_P.virgatum_v5 627 1,129,997,604 464 4,631,119 39.48
109 thale cress Arabidopsis thaliana GCF_000001735.4_TAIR10.1 7 119,668,634 357 186,207 22.66
110 thunder duke vine Tripterygium wilfordii GCF_013401445.1_ASM1340144v1 321 348,533,228 146 155,133 38.51
111 tobacco N.attenuata Nicotiana attenuata GCF_001879085.1_NIATTr2 37,194 2,365,682,703 119,817 275,168,947 48.67
112 tobacco N.tomentosiformis Nicotiana tomentosiformis GCF_000390325.2_Ntom_v01 159,548 1,688,466,321 213,074 45,906,503 53.84
113 tomato Solanum lycopersicum GCF_000188115.4_SL3.0 3,150 828,349,174 19,634 81,405,486 35.29
114 tree cotton Gossypium arboreum GCF_000612285.1_Gossypium_arboreum_v1.0 75,419 1,694,597,732 45,768 133,605,613 55.58
115 trilobed morning glory Ipomoea triloba GCF_003576645.1_ASM357664v1 17 461,989,178 31,256 24,277,444 36.55
116 valley oak Quercus lobata GCF_001633185.1_ValleyOak3.0 2,010 846,070,421 1,674 1,928,049 37.85
117 vegetable marrow Cucurbita pepo subsp. pepo GCF_002806865.1_ASM280686v2 25,263 261,354,759 49,649 15,060,240 29.16
118 wax gourd Benincasa hispida GCF_009727055.1_ASM972705v1 1,791 912,951,219 24,524 14,778,634 49.69
119 white yam Dioscorea cayenensis subsp. rotundata GCF_009730915.1_TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22_25.fasta 2,254 584,308,608 4,760 4,746,954 40.61
120 wild Colombian cocoa Herrania umbratica GCF_002168275.1_ASM216827v2 6,074 234,039,246 119,056 12,987,944 32.45
121 wild emmer wheat (Zavitan) Triticum dicoccoides GCF_002162155.1_WEW_v2.0 148,396 10,677,929,594 344,768 353,856,019 2.75
122 wild strawberry Fragaria vesca subsp. vesca GCF_000184155.1_FraVesHawaii_1.0 3,048 214,373,013 16,253 12,337,912 21.46
123 wild Malaysian banana Musa acuminata subsp. malaccensis GCF_000313855.2_ASM31385v2 7,259 472,231,289 22,178 81,753,843 31.15
124 wild cabbage Brassica oleracea var. oleracea GCF_000695525.1_BOL 32,886 488,954,160 52,140 43,004,782 31.22
125 wild olive Olea europaea var. sylvestris GCF_002742605.1_O_europaea_v1 41,226 1,141,145,264 47,638 109,491,681 40.81
126 wild peanut A.ipaensis Arachis ipaensis GCF_000816755.2_Araip1.1 548 1,353,504,219 122,617 96,468,404 53.63
127 wild peanut A.duranensis Arachis duranensis GCF_000817695.2_Aradu1.1 1,507 1,084,261,490 133,967 144,244,720 45.37
128 wild tomato S.pennellii Solanum pennellii GCF_001406875.1_SPENNV200 12 926,426,464 41,684 71,074,709 36.94
129 wild soybean Glycine soja GCF_004193775.1_ASM419377v2 1,120 1,013,766,566 752 24,573,723 46.23
130 wine grape Vitis vinifera GCF_000003745.3_12X 1,907 486,196,837 13,440 15,055,470 34.81
131 winter squash Cucurbita maxima GCF_002738345.1_Cmax_1.0 8,299 271,413,401 17,224 5,965,588 35.69
132 wood tobacco Nicotiana sylvestris GCF_000393655.1_Nsyl 253,918 2,221,987,173 338,901 174,312,597 49.12
TOTALS:total assembly count 132 2,383,758 114,305,238,492 5,157,226 5,207,431,306  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 31 assemblies assembly stats track stats
Mammals 132 assemblies assembly stats track stats
Birds 80 assemblies assembly stats track stats
Fishes 110 assemblies assembly stats track stats
other vertebrates 41 assemblies assembly stats track stats
Invertebrates 229 assemblies assembly stats track stats
Plants 132 assemblies assembly stats track stats
Fungi 355 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 189 assemblies assembly stats track stats
legacy/superseded 22 assemblies assembly stats track stats