Plants Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of plants only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 adzuki bean (LongXiaoDou No.4 2021) Vigna angularis GCF_016808095.1_ASM1680809v1 36 448,362,642 32 3,200 37.69
2 adzuki bean (Jingnong 6 2015) Vigna angularis GCF_001190045.1_Vigan1.1 37,375 467,300,602 21,264 16,984,597 36.08
3 African oil palm Elaeis guineensis GCF_000442705.1_EG5 40,061 1,535,178,229 166,490 478,075,098 30.77
4 African rice (2021) Oryza glaberrima GCF_000147395.1_OglaRS2 60 347,453,675 21 1,310 30.97
5 algarrobo blanco Prosopis alba GCF_004799145.1_ASM479914v1 6,087 707,161,903 0 0 38.30
6 almond Prunus dulcis GCF_902201215.1_ALMONDv2 692 227,756,880 6,531 3,915,731 26.10
7 annual ryegrass (FL_2022 2022) Lolium rigidum GCF_022539505.1_APGP_CSIRO_Lrig_0.1 1,764 2,438,467,165 31,919 3,191,900 59.38
8 annual mercury (primary hap 2022) Mercurialis annua GCF_937616625.1_ddMerAnnu1.1 63 453,168,992 15 3,000 50.62
9 apple (Golden Delicious X9273 #13 2017 refseq) Malus domestica GCF_002114115.1_ASM211411v1 807 703,358,299 7,264 77,686,614 45.18
10 Barbados nut Jatropha curcas GCF_014843425.1_RJC1_Hi-C 1,232 266,964,007 2,151 1,075,578 33.35
11 barrel medic (A17 2014) Medicago truncatula GCF_000219495.3_MedtrA17_4.0 2,187 412,924,424 8,785 22,828,023 32.47
12 barrel medic (HM340 2017) Medicago truncatula GCA_002024945.1_R108_v._1.0 909 402,065,285 107 2,716,341 35.40
13 barrel medic (2018) Medicago truncatula GCF_003473485.1_MtrunA17r5.0-ANR 42 430,008,013 22 574,260 37.65
14 bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 alternate hap 2023) Umbellularia californica GCA_028538565.1_dmUmbCali1.0.hap2 197 959,572,790 39 3,900 45.57
15 bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 primary hap 2023) Umbellularia californica GCA_028534965.1_dmUmbCali1.0.hap1 303 976,445,573 36 3,600 45.88
16 beet (EL10 2021 USDA) Beta vulgaris subsp. vulgaris GCF_002917755.1_EL10_1.0 42 541,052,636 323 54,851 35.22
17 bigberry manzanita (GLNDR_RDG_Rd-6 alternate hap 2021) Arctostaphylos glauca GCA_019985075.1_ddArcGlau1.0.a 2,350 556,397,040 120 13,200 44.59
18 bigberry manzanita (GLNDR_RDG_Rd-6 primary hap 2022) Arctostaphylos glauca GCA_019985065.2_ddArcGlau1.1p 272 547,665,946 82 8,200 38.38
19 bitter melon Momordica charantia GCF_001995035.1_ASM199503v1 1,052 285,613,949 109,310 22,117,873 30.98
20 black cottonwood (Ptri.A.LA.226.w1 alternate hap 2023) Populus trichocarpa GCA_028534865.1_ddPopTric1.0.hap2 338 423,209,812 33 3,300 39.61
21 black cottonwood (Ptri.A.LA.226.w1 primary hap 2023) Populus trichocarpa GCA_028534895.1_ddPopTric1.0.hap1 132 423,921,969 26 2,600 40.08
22 black cottonwood (v4.1 Nisqually-1 2022) Populus trichocarpa GCF_000002775.5_P.trichocarpa_v4.1 47 392,319,212 59 590,000 36.29
23 black tea Camellia sinensis GCF_004153795.1_AHAU_CSS_1 14,028 3,105,370,065 79,329 244,909,388 50.77
24 bread wheat (Fielder 2021) Triticum aestivum GCA_907166925.1_wheat_cv_fielder_v1_assembly 3,795 14,702,880,414 1,407 140,700 100.00
25 bread wheat (Chinese Spring 2021, UC Davis) Triticum aestivum GCF_018294505.1_IWGSC_CS_RefSeq_v2.1 91,589 14,566,954,962 214,799 252,458,126 75.42
26 cacao Theobroma cacao GCF_000208745.1_Criollo_cocoa_genome_V2 431 324,879,930 11,787 18,504,642 33.24
27 California black walnut (Jcal.S.LA.6 alternate hap 2022) Juglans californica GCA_023349545.1_dhJugClai1.0.a 915 565,449,464 78 7,801 34.13
28 California black walnut (Jcal.S.LA.6 primary hap 2022) Juglans californica GCA_023349395.1_dhJugCali1.0.p 138 551,767,272 11 1,108 34.97
29 California scrub oak (Qber.S.LA.60 alternate hap 2023) Quercus berberidifolia GCA_028535905.1_dhQueBerb1.0.hap2 807 828,113,576 43 4,300 40.77
30 California scrub oak (Qber.S.LA.60 primary hap 2023) Quercus berberidifolia GCA_028535815.1_dhQueBerb1.0.hap1 283 801,701,692 32 3,200 41.09
31 Cannabis sativa (Harvard OEB 2019) Cannabis sativa GCF_900626175.2_cs10 221 876,147,649 843 139,568,290 47.72
32 Cannabis sativa (Cannatonic 2016) Cannabis sativa GCA_001865755.1_ASM186575v1 11,110 585,823,666 0 0 59.22
33 Cannabis sativa (Jamaican Lion DASH 2019) Cannabis sativa GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly 3,372 1,333,378,596 0 0 58.67
34 capsicum (Zunla-1 2015 refseq) Capsicum annuum GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 1,627 2,935,884,163 107,172 94,870,520 46.16
35 carrot Daucus carota subsp. sativus GCF_001625215.1_ASM162521v1 4,826 421,539,040 26,112 34,744,006 31.53
36 cassava (v8 AM560-2 2021 DOE) Manihot esculenta GCF_001659605.2_M.esculenta_v8 86 640,430,993 672 2,472,345 56.86
37 castor bean (Hale 2011 JCVI) Ricinus communis GCF_000151685.1_JCVI_RCG_1.1 25,763 350,621,860 23,313 13,662,715 43.20
38 castor bean (wild-type WT05 2021) Ricinus communis GCF_019578655.1_ASM1957865v1 140 315,619,833 331 165,001 39.25
39 eudicots chia (TCC Black 2014 2022) Salvia hispanica GCF_023119035.1_UniMelb_Shisp_WGS_1.0 1,556 321,469,233 3,756 613,165 31.94
40 chickpea Cicer arietinum GCF_000331145.1_ASM33114v1 7,127 530,893,862 31,897 48,145,013 43.84
41 China rose (Old Blush v2 2019) Rosa chinensis GCF_002994745.2_RchiOBHm-V2 53 515,118,979 33 3,300 35.18
42 Chinese keys (BR_CEBAR01 2022) Boesenbergia rotunda GCA_024364735.1_CEBAR_Bro_1.0 10,627 2,347,514,961 25,154 80,282,024 62.53
43 Chinese white pear (Dangshansuli 2012) Pyrus x bretschneideri GCF_000315295.1_Pbr_v1.0 2,182 508,550,595 24,384 10,955,858 34.16
44 Chinese white pear (Hongxiangsu 2021) Pyrus x bretschneideri GCF_019419815.1_Pyrus_bretschneideri_v1 452 509,113,298 0 0 35.78
45 clementine Citrus clementina GCF_000493195.1_Citrus_clementina_v1.0 1,398 301,364,702 7,564 6,235,590 33.93
46 climbing nightshade (primary hap 2022) Solanum dulcamara GCF_947179165.1_daSolDulc1.2 105 946,304,905 38 13,900 43.54
47 club-mosses (2010) Selaginella moellendorffii GCF_000143415.4_v1.0 757 212,315,224 4,395 3,944,198 36.24
48 club-mosses (Aurea 2015) Selaginella kraussiana GCA_001021135.1_ASM102113v1 105,914 114,502,747 351 1,226 13.69
49 coffee C.arabica Coffea arabica GCF_003713225.1_Cara_1.0 2,833 1,094,446,607 691 2,272,354 41.68
50 coffee C.eugenioides Coffea eugenioides GCF_003713205.1_Ceug_1.0 3,530 699,903,961 3,482 14,570,140 38.92
51 common bean Phaseolus vulgaris GCF_000499845.1_PhaVulg1_0 708 521,076,696 40,860 48,622,872 37.30
52 common jujube (Dongzao 2015) Ziziphus jujuba GCF_000826755.1_ZizJuj_1.1 4,789 437,753,511 24,158 20,440,151 38.47
53 common jujube (AT0 2021) Ziziphus jujuba var. spinosa GCF_020796205.1_ASM2079620v1 538 405,636,987 381 32,330 42.87
54 common sunflower Helianthus annuus GCF_002127325.2_HanXRQr2.0-SUNRISE 334 3,010,047,587 2,384 61,903,061 58.41
55 common tobacco Nicotiana tabacum GCF_000715135.1_Ntab-TN90 168,247 3,643,471,356 292,325 105,632,266 52.09
56 cork oak (v2 HL8 2018) Quercus suber GCF_002906115.2_CorkOak1.0 22,642 908,051,981 25,649 18,627,901 36.37
57 cotton G.hirsutum (BGI 2015) Gossypium hirsutum GCF_000987745.1_ASM98774v1 9,148 2,189,140,010 48,742 62,279,885 52.02
58 cotton G.hirsutum (HudsonAlpha 2021) Gossypium hirsutum GCF_007990345.1_Gossypium_hirsutum_v2.1 1,027 2,306,070,423 5,708 2,911,000 54.76
59 cotton G.raimondii Gossypium raimondii GCF_000327365.1_Graimondii2_0 1,034 761,565,430 19,717 13,440,339 40.84
60 cowpea (IT97K-499-35 v2 2019) Vigna unguiculata GCF_004118075.2_ASM411807v2 676 518,747,877 68 2,720,798 41.70
61 crookneck pumpkin Cucurbita moschata GCF_002738365.1_Cmos_1.0 3,500 269,943,085 13,813 6,969,420 33.33
62 cucumber Cucumis sativus GCF_000004075.3_Cucumber_9930_V3 88 226,640,966 89 36,170 33.74
63 damask rose (2016) Rosa x damascena GCA_001662545.1_ASM166254v1 307,872 711,719,955 101,982 20,700,536 31.43
64 date palm (Barhee BC4 2019) Phoenix dactylifera GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p 2,391 773,189,301 317 31,700 44.18
65 date palm (Khalas 2013) Phoenix dactylifera GCF_000413155.1_DPV01 80,317 556,480,649 64,723 48,937,941 27.53
66 date-plum (Yz01 2020) Diospyros lotus GCF_014633365.1_ASM1463336v1 43 630,256,098 606 63,766 36.32
67 domesticated barley (H.vulgare 2021 refseq) Hordeum vulgare subsp. vulgare GCF_904849725.1_MorexV3_pseudomolecules_assembly 291 4,225,713,981 162 1,325,794 72.59
68 durian Durio zibethinus GCF_002303985.1_Duzib1.0 677 715,230,256 3,044 3,044,000 48.23
69 eggplant (2014) Solanum melongena GCA_000787875.1_SME_r2.5.1 33,873 833,080,760 118,249 39,558,071 38.61
70 English oak (primary hap 2022) Quercus robur GCF_932294415.1_dhQueRobu3.1 96 789,348,578 119 22,627 39.67
71 English walnut Juglans regia GCF_001411555.2_Walnut_2.0 24,757 572,946,670 1,051 603,869 33.96
72 eudicots bell pepper (UCD-10X-F1 2018) Capsicum annuum GCF_002878395.1_UCD10Xv1.1 81,202 3,212,488,018 52,577 87,785,288 47.64
73 eudicots J.microcarpa x regia (UCDavis 2019) Juglans microcarpa x Juglans regia GCF_004785595.1_Jm3101_v1.0 154 527,895,757 54 4,310,200 31.94
74 eudicots S.splendens huo1 (BFU 2021) Salvia splendens GCF_004379255.1_SspV2 1,178 806,486,317 471 34,558 41.09
75 Euphrates poplar (v2 2014) Populus euphratica GCF_000495115.2_PopEup_1.0 9,502 495,077,684 22,764 23,280,799 43.23
76 European crab apple (2022) Malus sylvestris GCF_916048215.2_drMalSylv7.2 34 641,526,810 101 39,700 41.21
77 European hop (Shinshu Wase 2014) Humulus lupulus var. lupulus GCA_000831365.1_hl_SW_version_1.0.fasta 132,476 2,049,208,583 530,762 273,442,317 41.58
78 false flax Camelina sativa GCF_000633955.1_Cs 37,212 641,356,059 74,428 45,052,215 27.36
79 field mustard Brassica rapa GCF_000309985.2_CAAS_Brap_v3.01 1,100 352,983,092 408 2,139,352 38.03
80 finger millet (ML-365 2017) Eleusine coracana subsp. coracana GCA_002180455.1_ASM218045v1 525,623 1,195,984,529 507,646 15,538,887 33.01
81 foxtail millet Setaria italica GCF_000263155.2_Setaria_italica_v2.0 337 405,868,399 6,442 4,823,979 29.32
82 garden asparagus (2017) Asparagus officinalis GCF_001876935.1_Aspof.V1 11,792 1,187,538,024 47,391 35,529,562 46.51
83 garden pea (Zhongwan6 2022) Pisum sativum GCF_024323335.1_CAAS_Psat_ZW6_1.0 1,566 3,796,066,963 826 10,242,498 66.96
84 ghaf (Desert tree PC_DT_omini 2023) Prosopis cineraria GCF_029017545.1_ASM2901754v1 2,266 691,555,879 1,693 169,300 39.63
85 ginger Zingiber officinale GCF_018446385.1_Zo_v1.1 211 3,090,429,014 901 66,749 61.43
86 globe artichoke (v1.1 2C 2018) Cynara cardunculus var. scolymus GCF_001531365.2_CcrdV1.1 8,174 724,962,400 310,402 70,773,342 39.51
87 goatgrass A.strangulata Aegilops tauschii subsp. strangulata GCF_002575655.1_Aet_v4.0 109,126 4,223,628,083 107,163 95,883,577 71.59
88 goatgrass A.tauschii Aegilops tauschii subsp. tauschii GCF_001957025.1_Aet_MR_1.0 68,537 4,327,320,947 0 0 73.17
89 golden kiwifruit (Red5 2018) Actinidia chinensis var. chinensis GCA_003024255.1_Red5_PS1_1.69.0 1,234 553,842,477 25,521 19,766,770 30.97
90 great duckweed (9509 2017) Spirodela polyrhiza GCA_001981405.1_ASM198140v1 20 136,670,443 89,257 10,000,849 19.71
91 green algae A.protothecoides (0710 2014) Auxenochlorella protothecoides GCF_000733215.1_ASM73321v1 374 22,924,637 1,012 1,068,446 20.32
92 green algae B.prasinos (RCC1105 2012) Bathycoccus prasinos GCF_002220235.1_ASM222023v1 21 15,074,320 20 36,198 21.94
93 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 refseq) Chlamydomonas reinhardtii GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5 53 111,098,438 1,459 4,050,214 34.14
94 green algae C.reinhardtii (CC-5816 2022) Chlamydomonas reinhardtii GCA_026108075.1_ASM2610807v1 17 113,900,589 0 0 37.69
95 green algae C.subellipsoidea (C-169 2012) Coccomyxa subellipsoidea C-169 GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0 29 48,826,616 0 0 14.37
96 green algae C.variabilis (NC64A 2010 refseq) Chlorella variabilis GCF_000147415.1_v_1.0 414 46,159,512 3,543 3,945,106 37.21
97 green algae K.nitens (NIES-2285 2014) Klebsormidium nitens GCA_000708835.1_ASM70883v1 1,814 104,209,716 2,081 1,063,706 8.60
98 green algae M.commoda (RCC299 2009) Micromonas commoda GCF_000090985.2_ASM9098v2 19 21,109,336 0 0 27.80
99 green algae M.neglectum (SAG 48.87 2015) Monoraphidium neglectum GCF_000611645.1_mono_v1 6,720 69,711,829 5,358 2,388,539 31.85
100 green algae M.pusilla (CCMP1545 2009) Micromonas pusilla CCMP1545 GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0 21 21,958,260 583 251,394 48.67
101 green algae O.lucimarinus (CCE9901 2007) Ostreococcus lucimarinus CCE9901 GCF_000092065.1_ASM9206v1 21 13,204,888 0 0 34.92
102 green algae O.tauri (RCC4221 2014) Ostreococcus tauri GCF_000214015.3_version_140606 22 13,032,761 477 9,540 27.92
103 green algae V.carteri (Eve 2010) Volvox carteri f. nagariensis GCF_000143455.1_v1.0 1,251 137,684,403 12,014 12,218,621 24.01
104 green chiretta (2019) Andrographis paniculata GCF_009805555.1_ASM980555v1 271 284,458,270 0 0 41.89
105 green foxtail Setaria viridis GCF_005286985.1_Setaria_viridis_v2.0 15 395,869,604 61 610,000 29.12
106 Guinea yam (TDr96_F1 2017) Dioscorea cayenensis subsp. rotundata GCA_002240015.2_TDr96_F1_Pseudo_Chromosome_v1.0 21 456,674,974 1,032,823 51,665,385 32.54
107 Hall's panicgrass Panicum hallii GCF_002211085.1_PHallii_v3.1 291 535,889,049 736 7,360,000 45.31
108 eudicots Himalayan balsam Impatiens glandulifera GCF_907164915.1_dImpGla2.1 1,115 654,031,307 858 307,343 47.04
109 horseweed Erigeron canadensis GCF_010389155.1_C_canadensis_v1 357 426,376,474 502 50,200 36.50
110 Indian licorice Abrus precatorius GCF_003935025.1_Abrus_2018 160 347,230,236 184 8,618 38.92
111 interior live oak (QUWIS_CCGP_1 alternate hap 2022) Quercus wislizeni GCA_023055485.1_dhQueWisl1.0.a 689 768,449,301 82 8,200 38.05
112 interior live oak (QUWIS_CCGP_1 primary hap 2022) Quercus wislizeni GCA_023055345.1_dhQueWisl1.0.p 358 724,823,050 81 8,100 36.98
113 island oak (RSA801373 alternate hap 2023) Quercus tomentella GCA_028535165.1_dhQueTome1.0.hap2 156 774,886,980 53 5,300 38.57
114 island oak (RSA801373 primary hap 2023) Quercus tomentella GCA_028535515.1_dhQueTome1.0.hap1 274 780,705,769 53 5,300 38.97
115 Japanese apricot Prunus mume GCF_000346735.1_P.mume_V1.0 8,164 234,030,239 15,597 16,851,380 23.26
116 Japanese morning glory Ipomoea nil GCF_001879475.1_Asagao_1.1 3,418 735,230,855 449 211,647 46.65
117 Japanese rice Oryza sativa Japonica Group GCF_001433935.1_IRGSP-1.0 58 374,422,835 925 118,258 39.08
118 Korean lawngrass (Nagirizaki 2016) Zoysia japonica GCA_001602275.1_ASM160227v1 11,786 334,384,427 14,848 10,916,038 21.98
119 garden lettuce (Salinas v11 2022) Lactuca sativa GCF_002870075.4_Lsat_Salinas_v11 93 2,590,369,317 384 1,337,877 61.51
120 lettuce eudicots (Salinas 2011) Lactuca sativa GCA_000227445.1_Legassy_V2 876,110 1,133,657,130 0 0 33.87
121 lyrate rockcress Arabidopsis lyrata subsp. lyrata GCF_000004255.2_v.1.0 696 206,822,858 2,950 22,960,134 24.71
122 macadamia nut Macadamia integrifolia GCF_013358625.1_SCU_Mint_v3 2,644 744,937,181 22,059 11,169,871 34.40
123 Madagascar periwinkle (Sunstorm Apricot 2015) Catharanthus roseus GCA_000949345.1_ASM94934v1 79,302 522,653,749 123,798 4,421,537 40.10
124 maize Zea mays GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 687 2,182,786,008 708 3,807,886 78.52
125 malo sina (v2 2021) Oryza brachyantha GCF_000231095.2_ObraRS2 60 263,329,681 14 1,400 29.33
126 mango Mangifera indica GCF_011075055.1_CATAS_Mindica_2.1 250 391,961,648 169 82,844 32.64
127 monocots Aegilops tauschii subsp. strangulata GCF_002575655.2_Aet_v5.0 109,197 4,218,179,011 69,858 85,862,728 71.80
128 mosses Physcomitrium patens GCF_000002425.4_Phypa_V3 359 472,081,022 2,645 5,980,522 52.54
129 mulberry M.notabilis Morus notabilis GCF_000414095.1_ASM41409v2 31,301 320,378,613 15,541 16,272,868 34.55
130 mung bean (VC1973A 2015 refseq) Vigna radiata var. radiata GCF_000741045.1_Vradiata_ver6 2,465 463,563,650 96,870 33,558,735 34.89
131 muskmelon (AY 2022) Cucumis melo GCF_025177605.1_USDA_Cmelo_AY_1.0 1,310 438,408,223 239 23,900 43.96
132 muskmelon (DHL92 2012) Cucumis melo GCF_000313045.1_ASM31304v1 31,463 374,928,380 29,172 39,388,261 33.22
133 narrow-leaved blue lupine Lupinus angustifolius GCF_001865875.1_LupAngTanjil_v1.0 13,573 609,203,021 44,657 4,159,247 38.12
134 New South Wales waratah (Mountain lineage 2021) Telopea speciosissima GCF_018873765.1_Tspe_v1 1,289 823,061,212 2,037 18,174 34.27
135 opium poppy Papaver somniferum GCF_003573695.1_ASM357369v1 34,381 2,715,530,335 31,183 5,407,606 55.85
136 orchid D.catenatum Dendrobium catenatum GCF_001605985.2_ASM160598v2 286,090 1,104,259,548 25,751 43,341,589 39.09
137 orchid P.equestris Phalaenopsis equestris GCF_001263595.1_ASM126359v1 89,584 1,064,200,343 98,814 80,500,320 42.22
138 papaya Carica papaya GCF_000150535.2_Papaya1.0 17,766 370,418,818 29,719 98,048,973 28.89
139 peach Prunus persica GCF_000346465.2_Prunus_persica_NCBIv2 192 227,569,171 2,368 2,772,483 28.75
140 peanut Arachis hypogaea GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 385 2,557,073,284 3,655 3,895,359 62.33
141 pearl millet (Tift 23D2B1-P1-P5 2018) Cenchrus americanus GCA_002174835.2_ASM217483v2 52,033 1,816,949,023 156,852 237,711,153 56.89
142 pecan Carya illinoinensis GCF_018687715.1_C.illinoinensisPawnee_v1 17 674,433,157 22 180,295 39.04
143 perennial ryegrass (Kyuss_39 2021) Lolium perenne GCF_019359855.1_MPB_Lper_Kyuss_1697 1,677 2,276,788,877 238 23,800 69.25
144 Peruvian cotton (G.raimondii 2012 DOE) Gossypium raimondii GCF_000327365.2_Graimondii2_0v2 995 761,251,514 19,685 13,410,920 40.85
145 Peruvian cotton (GPD5lz 2022) Gossypium raimondii GCF_025698545.1_ASM2569854v1 289 751,041,726 79 7,900 41.80
146 pigeon pea (v2 2016 BGI) Cajanus cajan GCF_000340665.2_C.cajan_V1.1 31,511 590,523,786 36,323 34,424,323 39.20
147 pineapple Ananas comosus GCF_001540865.1_ASM154086v1 3,129 382,055,938 25,542 6,802,254 38.96
148 pink shepherd's-purse Capsella rubella GCF_000375325.1_Caprub1_0 773 133,063,876 6,294 3,314,705 25.01
149 pistachio Pistacia vera GCF_008641045.1_PisVer_v2 1,865 671,280,010 16,367 1,075,147 36.35
150 pocket water lily (Beijing-Zhang1983 2022) Nymphaea colorata GCF_008831285.2_ASM883128v2 786 408,895,275 626 673,106 26.73
151 pomegranate Punica granatum GCF_007655135.1_ASM765513v2 474 320,494,280 188 18,800 32.90
152 potato S.stenotomum (F172 2021) Solanum stenotomum GCF_019186545.1_ASM1918654v1 17,084 846,404,520 37,060 98,169,863 33.93
153 potato S.tuberosum (Dihaploid 'C-13' 2020) Solanum tuberosum GCA_010127505.1_ASM1012750v1 12 772,252,986 10,041,161 137,769,677 33.53
154 potato S.tuberosum (DM 1-3 516 R44 2011) Solanum tuberosum GCF_000226075.1_SolTub_3.0 14,854 705,934,411 45,215 42,644,607 40.83
155 potato S.tuberosum (hap 1 of 4 Otava Stieglitz 2021) Solanum tuberosum GCA_020169555.1_solTubStieglitzHap1 25 774,056,002 1,476 147,600 40.29
156 potato S.tuberosum (hap 2 of 4 Otava Stieglitz 2021) Solanum tuberosum GCA_020169535.1_solTubStieglitzHap2 28 754,204,343 1,499 149,900 39.88
157 potato S.tuberosum (hap 3 of 4 Otava Hera 2021) Solanum tuberosum GCA_020169585.1_solTubHeraHap1 27 764,145,483 1,299 129,900 40.27
158 potato S.tuberosum (hap 4 of 4 Otava Hera 2021) Solanum tuberosum GCA_020169575.1_solTubHeraHap2 26 774,674,219 1,383 138,300 40.34
159 potato S.tuberosum (RH89-039-16 2020) Solanum tuberosum GCA_014189475.1_ASM1418947v1 12 810,122,902 4,448 443,810 46.16
160 potato S.tuberosum (alt pseudohaplotype RH89-039-16 2020) Solanum tuberosum GCA_014189305.1_ASM1418930v1 3,012 863,432,374 4,397 438,344 46.83
161 potato S.verrucosum (2019) Solanum verrucosum GCF_900185275.1_falcon-dt-bn 1,332 662,419,838 1,612 2,970,972 38.04
162 quinoa Chenopodium quinoa GCF_001683475.1_ASM168347v1 3,487 1,333,551,035 725 11,238,908 49.51
163 radish Raphanus sativus GCF_000801105.1_Rs1.0 10,676 426,614,037 28,041 54,594,507 26.67
164 rape (ZS11 2017) Brassica napus GCF_000686985.2_Bra_napus_v2.0 1,471 976,190,593 32,639 68,842,306 32.93
165 rape (Da-Ae 2021) Brassica napus GCF_020379485.1_Da-Ae 3,167 1,001,886,053 840 85,797 42.43
166 eudicots red clover (HEN17-A07 2021) Trifolium pratense GCF_020283565.1_ARS_RC_1.1 90 414,027,294 231 121,850 37.05
167 red wild einkorn wheat (G1812 2018) Triticum urartu GCF_003073215.2_Tu2.1 10,205 4,849,192,930 33,814 30,285,589 71.93
168 eudicots rice bean (VRB-3 Himshakti 2021) Vigna umbellata GCF_018835915.1_ASM1883591v1 15,445 414,499,397 20,717 27,073,592 32.62
169 riverbank grape Vitis riparia GCF_004353265.1_EGFV_Vit.rip_1.0 175 500,266,779 1,095 6,066,783 35.29
170 rose gum (2021) Eucalyptus grandis GCF_016545825.1_ASM1654582v1 37 616,530,258 1,712 171,200 29.53
171 rose gum (BRASUZ1 2014) Eucalyptus grandis GCF_000612305.1_Egrandis1_0 4,951 691,429,809 27,773 50,634,931 27.36
172 rose of Sharon Hibiscus syriacus GCF_006381635.1_ASM638163v2 1,789 1,826,930,762 2 2,809 51.74
173 rubber tree Hevea brasiliensis GCF_001654055.1_ASM165405v1 7,453 1,373,527,118 40,863 79,796,328 61.60
174 sacred lotus Nelumbo nucifera GCF_000365185.1_Chinese_Lotus_1.1 3,603 804,647,751 175,846 97,029,293 30.21
175 saltwater cress Eutrema salsugineum GCF_000478725.1_Eutsalg1_0 638 243,110,105 3,020 4,665,582 32.12
176 sandblossoms (Phelan CA IGA184 alternate hap 2022) Linanthus parryae GCA_023055565.1_ddLinParr1.0.a 581 1,755,725,946 149 14,900 54.25
177 sandblossoms (Phelan CA IGA184 primary hap 2022) Linanthus parryae GCA_023055425.1_ddLinParr1.0.p 123 1,514,492,808 85 8,500 49.92
178 scarlet sage (huo1 2021) Salvia splendens GCF_004379255.2_SspV2 1,162 806,082,050 471 34,558 41.10
179 scented satinash Syzygium oleosum GCF_900635055.1_Sole10x-PRISCAF 19,039 431,290,611 11,862 44,627,900 25.36
180 sesame Sesamum indicum GCF_000512975.1_S_indicum_v1.0 16,236 275,059,498 9,940 4,572,828 31.03
181 silver malletwood (14919 2019) Rhodamnia argentea GCF_900635035.1_Rarg10x-PRISCAF 15,781 414,815,504 7,529 26,068,170 25.40
182 silver malletwood (NSW1041297 2021) Rhodamnia argentea GCF_020921035.1_ASM2092103v1 75 346,714,100 36 3,600 28.26
183 silver poplar Populus alba GCF_005239225.1_ASM523922v1 1,287 416,985,780 0 0 38.38
184 silverweed cinquefoil (primary hap 2022) Potentilla anserina GCF_933775445.1_drPotAnse1.1 147 236,973,942 8 3,400 35.61
185 sorghum (BTx623 2017) Sorghum bicolor GCF_000003195.3_Sorghum_bicolor_NCBIv3 869 709,344,700 3,906 33,371,430 62.32
186 sorghum (Tx430 2018) Sorghum bicolor GCA_003482435.1_Corteva_Sorghum_ONT_TX430_1.0 308 666,154,603 2,108 13,598,666 61.88
187 soybean (US DOE JGI-PGF v2 2021) Glycine max GCF_000004515.6_Glycine_max_v4.0 284 978,941,695 8,918 25,908,898 45.08
188 spider flower Tarenaya hassleriana GCF_000463585.1_ASM46358v1 12,249 249,929,577 24,824 30,779,355 31.65
189 spinach Spinacia oleracea GCF_002007265.1_ASM200726v1 78,263 869,946,296 137,086 38,941,226 52.85
190 spotted monkey flower Erythranthe guttata GCF_000504015.1_Mimgu1_0 2,212 322,166,964 15,528 21,004,488 40.62
191 stiff brome Brachypodium distachyon GCF_000005505.3_Brachypodium_distachyon_v3.0 11 271,298,618 27 423,960 21.35
192 strawberry (Reikou 2013) Fragaria x ananassa GCA_000511835.1_FAN_r1.1 625,966 697,762,269 89,898 39,317,423 28.93
193 sweet cherry Prunus avium GCF_002207925.1_PAV_r1.0 10,148 272,361,615 22,628 25,563,184 25.22
194 sweet orange Citrus sinensis GCF_000317415.1_Csi_valencia_1.0 4,844 327,829,540 12,539 26,598,031 29.54
195 sweet potato (Taizhong6 2017) Ipomoea batatas GCA_002525835.2_ipoBat4 28,461 837,013,208 171,925 100,978,921 32.45
196 switchgrass Panicum virgatum GCF_016808335.1_P.virgatum_v5 627 1,129,997,604 464 4,631,119 39.48
197 Tartarian buckwheat (Pinku1 2017) Fagopyrum tataricum GCA_002319775.1_Ft1.0 7,020 505,882,852 2,456 16,633,491 41.82
198 thale cress (tair10.1 Columbia 2018) Arabidopsis thaliana GCF_000001735.4_TAIR10.1 7 119,668,634 357 186,207 22.66
199 thunder duke vine Tripterygium wilfordii GCF_013401445.1_ASM1340144v1 321 348,533,228 146 155,133 38.51
200 tobacco N.attenuata Nicotiana attenuata GCF_001879085.1_NIATTr2 37,194 2,365,682,703 119,817 275,168,947 48.67
201 tobacco N.tomentosiformis Nicotiana tomentosiformis GCF_000390325.2_Ntom_v01 159,548 1,688,466,321 213,074 45,906,503 53.84
202 tomato (v3.1 Heinz 1706 2018) Solanum lycopersicum GCF_000188115.5_SL3.1 3,066 827,962,994 19,539 81,317,953 35.27
203 toyon (HeAr 88 alternate hap 2022) Heteromeles arbutifolia GCA_024363235.1_drHetArbu1.0.a 75 638,231,885 11 1,100 40.23
204 toyon (HeAr 88 primary hap 2022) Heteromeles arbutifolia GCA_024362995.1_drHetArbu1.0.p 118 634,784,569 5 500 39.87
205 tree cotton (Shixiya1 2015 BGI) Gossypium arboreum GCF_000612285.1_Gossypium_arboreum_v1.0 75,419 1,694,597,732 45,768 133,605,613 55.58
206 tree cotton (Shixiya-1 2022) Gossypium arboreum GCF_025698485.1_ASM2569848v2 948 1,621,352,140 225 22,500 61.80
207 trilobed morning glory Ipomoea triloba GCF_003576645.1_ASM357664v1 17 461,989,178 31,256 24,277,444 36.55
208 Valencia sweet orange 2022 Citrus sinensis GCF_022201045.2_DVS_A1.0 11 299,778,546 8 8 33.87
209 valley oak (v3.2 2019) Quercus lobata GCF_001633185.2_ValleyOak3.2 2,002 845,947,251 1,673 1,923,068 37.85
210 Van Houtte's columbine (PFEx6 2022) Aquilegia eximia GCA_023053565.1_dmAquExim1.0.p 463 367,332,980 62 6,200 41.60
211 Van Houtte's columbine (alt pseudohaplotype PFEx6 2022) Aquilegia eximia GCA_023053535.1_dmAquExim1.0.a 249 365,822,783 63 6,300 42.29
212 vegetable marrow (v2 mu-cu-16 2017) Cucurbita pepo subsp. pepo GCF_002806865.2_ASM280686v2 24,194 260,363,902 49,199 14,663,826 29.17
213 wax gourd Benincasa hispida GCF_009727055.1_ASM972705v1 1,791 912,951,219 24,524 14,778,634 49.69
214 white yam Dioscorea cayenensis subsp. rotundata GCF_009730915.1_TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22_25.fasta 2,254 584,308,608 4,760 4,746,954 40.61
215 wild cabbage Brassica oleracea var. oleracea GCF_000695525.1_BOL 32,886 488,954,160 52,140 43,004,782 31.22
216 wild Colombian cocoa Herrania umbratica GCF_002168275.1_ASM216827v2 6,074 234,039,246 119,056 12,987,944 32.45
217 wild emmer wheat (Zavitan Atlit2015 v2.1 2019) Triticum dicoccoides GCF_002162155.2_WEW_v2.1 148,296 10,677,097,747 344,589 353,604,870 96.69
218 wild Malaysian banana Musa acuminata subsp. malaccensis GCF_000313855.2_ASM31385v2 7,259 472,231,289 22,178 81,753,843 31.15
219 wild olive Olea europaea var. sylvestris GCF_002742605.1_O_europaea_v1 41,226 1,141,145,264 47,638 109,491,681 40.81
220 wild peanut A.duranensis (v2 V14167 2020) Arachis duranensis GCF_000817695.3_aradu.V14167.gnm2.J7QH 1,581 1,081,891,522 135,554 130,031,000 45.96
221 wild peanut A.ipaensis Arachis ipaensis GCF_000816755.2_Araip1.1 548 1,353,504,219 122,617 96,468,404 53.63
222 wild soybean Glycine soja GCF_004193775.1_ASM419377v2 1,120 1,013,766,566 752 24,573,723 46.23
223 wild strawberry (2011 refseq) Fragaria vesca subsp. vesca GCF_000184155.1_FraVesHawaii_1.0 3,048 214,373,013 16,253 12,337,912 21.46
224 wild tomato S.pennellii Solanum pennellii GCF_001406875.1_SPENNV200 12 926,426,464 41,684 71,074,709 36.94
225 wine grape (PN40024 2009) Vitis vinifera GCF_000003745.3_12X 1,907 486,196,837 13,440 15,055,470 34.81
226 wine grape (Chkhaveri 2017) Vitis vinifera GCA_002922885.1_Chkhaveri_assembly01 21 427,171,260 9,429 10,006,815 34.89
227 winter cress (G-type 2016) Barbarea vulgaris GCA_001920985.1_ASM192098v1 7,810 167,352,128 22,839 15,653,620 23.88
228 winter squash Cucurbita maxima GCF_002738345.1_Cmax_1.0 8,299 271,413,401 17,224 5,965,588 35.69
229 wood tobacco Nicotiana sylvestris GCF_000393655.1_Nsyl 253,918 2,221,987,173 338,901 174,312,597 49.12
230 zha cai (T84-66 inbred line 2016) Brassica juncea var. tumida GCA_001687265.1_Brassica_juncea_var_tumida_T84-66_v1 9,746 954,861,368 22,714 194,287,956 26.36
TOTALS:total assembly count 230 5,513,880 233,576,948,376 18,290,613 6,743,073,075  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 159 assemblies assembly stats track stats
Mammals 407 assemblies assembly stats track stats
Birds 270 assemblies assembly stats track stats
Fishes 270 assemblies assembly stats track stats
other vertebrates 114 assemblies assembly stats track stats
Invertebrates 583 assemblies assembly stats track stats
Plants 230 assemblies assembly stats track stats
Fungi 544 assemblies assembly stats track stats
Viruses 259 assemblies assembly stats track stats
Bacteria 64 assemblies assembly stats track stats
legacy/superseded 336 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 445 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats