Plants Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of plants only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 adzuki bean Vigna angularis GCF_001190045.1_Vigan1.1 37,375 467,300,602 21,264 16,984,597 36.08
2 African oil palm Elaeis guineensis GCF_000442705.1_EG5 40,061 1,535,178,229 166,490 478,075,098 30.77
3 algarrobo blanco Prosopis alba GCF_004799145.1_ASM479914v1 6,087 707,161,903 0 0 38.30
4 almond Prunus dulcis GCF_902201215.1_ALMONDv2 692 227,756,880 6,531 3,915,731 26.10
5 monocots annual ryegrass (FL_2022 2022) Lolium rigidum GCF_022539505.1_APGP_CSIRO_Lrig_0.1 1,764 2,438,467,165 31,919 3,191,900 59.38
6 apple Malus domestica GCF_002114115.1_ASM211411v1 807 703,358,299 7,264 77,686,614 45.18
7 Barbados nut Jatropha curcas GCF_014843425.1_RJC1_Hi-C 1,232 266,964,007 2,151 1,075,578 33.35
8 barrel medic (2014) Medicago truncatula GCF_000219495.3_MedtrA17_4.0 2,187 412,924,424 8,785 22,828,023 32.47
9 barrel medic (2018) Medicago truncatula GCF_003473485.1_MtrunA17r5.0-ANR 42 430,008,013 22 574,260 37.65
10 beet Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 40,246 566,550,431 30,962 48,760,827 30.12
11 bitter melon Momordica charantia GCF_001995035.1_ASM199503v1 1,052 285,613,949 109,310 22,117,873 30.98
12 black cottonwood Populus trichocarpa GCF_000002775.4_Pop_tri_v3 1,447 434,289,848 6,871 11,192,221 36.05
13 black tea Camellia sinensis GCF_004153795.1_AHAU_CSS_1 14,028 3,105,370,065 79,329 244,909,388 50.77
14 bread wheat (Fielder 2021) Triticum aestivum GCA_907166925.1_wheat_cv_fielder_v1_assembly 3,795 14,702,880,414 1,407 140,700 100.00
15 bread wheat (Chinese Spring 2021, UC Davis) Triticum aestivum GCF_018294505.1_IWGSC_CS_RefSeq_v2.1 91,589 14,566,954,962 214,799 252,458,126 75.42
16 cacao Theobroma cacao GCF_000208745.1_Criollo_cocoa_genome_V2 431 324,879,930 11,787 18,504,642 33.24
17 cannabis Cannabis sativa GCF_900626175.2_cs10 221 876,147,649 843 139,568,290 47.72
18 capsicum Capsicum annuum GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 1,627 2,935,884,163 107,172 94,870,520 46.16
19 carrot Daucus carota subsp. sativus GCF_001625215.1_ASM162521v1 4,826 421,539,040 26,112 34,744,006 31.53
20 cassava (v8 AM560-2 2021 DOE) Manihot esculenta GCF_001659605.2_M.esculenta_v8 86 640,430,993 672 2,472,345 56.86
21 castor bean Ricinus communis GCF_000151685.1_JCVI_RCG_1.1 25,763 350,621,860 23,313 13,662,715 43.20
22 eudicots chia (TCC Black 2014 2022) Salvia hispanica GCF_023119035.1_UniMelb_Shisp_WGS_1.0 1,556 321,469,233 3,756 613,165 31.94
23 chickpea Cicer arietinum GCF_000331145.1_ASM33114v1 7,127 530,893,862 31,897 48,145,013 43.84
24 China rose (Old Blush v2 2019) Rosa chinensis GCF_002994745.2_RchiOBHm-V2 53 515,118,979 33 3,300 35.18
25 Chinese white pear Pyrus x bretschneideri GCF_000315295.1_Pbr_v1.0 2,182 508,550,595 24,384 10,955,858 34.16
26 clementine Citrus clementina GCF_000493195.1_Citrus_clementina_v1.0 1,398 301,364,702 7,564 6,235,590 33.93
27 club-mosses Selaginella moellendorffii GCF_000143415.4_v1.0 757 212,315,224 4,395 3,944,198 36.24
28 coffee C.arabica Coffea arabica GCF_003713225.1_Cara_1.0 2,833 1,094,446,607 691 2,272,354 41.68
29 coffee C.eugenioides Coffea eugenioides GCF_003713205.1_Ceug_1.0 3,530 699,903,961 3,482 14,570,140 38.92
30 common bean Phaseolus vulgaris GCF_000499845.1_PhaVulg1_0 708 521,076,696 40,860 48,622,872 37.30
31 common jujube Ziziphus jujuba GCF_000826755.1_ZizJuj_1.1 4,789 437,753,511 24,158 20,440,151 38.47
32 common sunflower Helianthus annuus GCF_002127325.2_HanXRQr2.0-SUNRISE 334 3,010,047,587 2,384 61,903,061 58.41
33 common tobacco Nicotiana tabacum GCF_000715135.1_Ntab-TN90 168,247 3,643,471,356 292,325 105,632,266 52.09
34 cork oak Quercus suber GCF_002906115.1_CorkOak1.0 23,344 953,298,670 26,139 19,161,636 36.11
35 cotton G.hirsutum (BGI 2015) Gossypium hirsutum GCF_000987745.1_ASM98774v1 9,148 2,189,140,010 48,742 62,279,885 52.02
36 cotton G.hirsutum (HudsonAlpha 2021) Gossypium hirsutum GCF_007990345.1_Gossypium_hirsutum_v2.1 1,027 2,306,070,423 5,708 2,911,000 54.76
37 cotton G.raimondii Gossypium raimondii GCF_000327365.1_Graimondii2_0 1,034 761,565,430 19,717 13,440,339 40.84
38 cowpea Vigna unguiculata GCF_004118075.1_ASM411807v1 682 519,066,764 68 2,720,798 41.67
39 crookneck pumpkin Cucurbita moschata GCF_002738365.1_Cmos_1.0 3,500 269,943,085 13,813 6,969,420 33.33
40 cucumber Cucumis sativus GCF_000004075.3_Cucumber_9930_V3 88 226,640,966 89 36,170 33.74
41 date palm (Barhee BC4 2019) Phoenix dactylifera GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p 2,391 773,189,301 317 31,700 44.18
42 date palm (Khalas 2013) Phoenix dactylifera GCF_000413155.1_DPV01 80,317 556,480,649 64,723 48,937,941 27.53
43 domesticated barley Hordeum vulgare subsp. vulgare GCF_904849725.1_MorexV3_pseudomolecules_assembly 291 4,225,713,981 162 1,325,794 72.59
44 durian Durio zibethinus GCF_002303985.1_Duzib1.0 677 715,230,256 3,044 3,044,000 48.23
45 East African water lily Nymphaea colorata GCF_008831285.1_ASM883128v1 800 409,013,923 627 62,502 26.82
46 English walnut Juglans regia GCF_001411555.2_Walnut_2.0 24,757 572,946,670 1,051 603,869 33.96
47 eudicots bell pepper (UCD-10X-F1 2018) Capsicum annuum GCF_002878395.1_UCD10Xv1.1 81,202 3,212,488,018 52,577 87,785,288 47.64
48 eudicots J.microcarpa x regia (UCDavis 2019) Juglans microcarpa x Juglans regia GCF_004785595.1_Jm3101_v1.0 154 527,895,757 54 4,310,200 31.94
49 eudicots S.splendens huo1 (BFU 2021) Salvia splendens GCF_004379255.1_SspV2 1,178 806,486,317 471 34,558 41.09
50 Euphrates poplar Populus euphratica GCF_000495115.1_PopEup_1.0 9,615 496,032,534 23,174 23,344,727 43.31
51 false flax Camelina sativa GCF_000633955.1_Cs 37,212 641,356,059 74,428 45,052,215 27.36
52 field mustard Brassica rapa GCF_000309985.2_CAAS_Brap_v3.01 1,100 352,983,092 408 2,139,352 38.03
53 foxtail millet Setaria italica GCF_000263155.2_Setaria_italica_v2.0 337 405,868,399 6,442 4,823,979 29.32
54 garden asparagus Asparagus officinalis GCF_001876935.1_Aspof.V1 11,792 1,187,538,024 47,391 35,529,562 46.51
55 ginger Zingiber officinale GCF_018446385.1_Zo_v1.1 211 3,090,429,014 901 66,749 61.43
56 globe artichoke Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 8,283 725,197,765 310,473 70,818,977 39.50
57 goatgrass A.strangulata Aegilops tauschii subsp. strangulata GCF_002575655.1_Aet_v4.0 109,126 4,223,628,083 107,163 95,883,577 71.59
58 goatgrass A.tauschii Aegilops tauschii subsp. tauschii GCF_001957025.1_Aet_MR_1.0 68,537 4,327,320,947 0 0 73.17
59 green algae A.protothecoides 0710 Auxenochlorella protothecoides GCF_000733215.1_ASM73321v1 374 22,924,637 1,012 1,068,446 20.32
60 green algae B.prasinos RCC1105 Bathycoccus prasinos GCF_002220235.1_ASM222023v1 21 15,074,320 20 36,198 21.94
61 green algae C.reinhardtii CC-503 cw92 (v2 2018) Chlamydomonas reinhardtii GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5 53 111,098,438 1,459 4,050,214 34.14
62 green algae C.subellipsoidea C-169 Coccomyxa subellipsoidea C-169 GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0 29 48,826,616 0 0 14.37
63 green algae C.variabilis NC64A Chlorella variabilis GCF_000147415.1_v_1.0 414 46,159,512 3,543 3,945,106 37.21
64 green algae M.commoda RCC299 Micromonas commoda GCF_000090985.2_ASM9098v2 19 21,109,336 0 0 27.80
65 green algae M.neglectum SAG 48.87 Monoraphidium neglectum GCF_000611645.1_mono_v1 6,720 69,711,829 5,358 2,388,539 31.85
66 green algae M.pusilla CCMP1545 Micromonas pusilla CCMP1545 GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0 21 21,958,260 583 251,394 48.67
67 green algae O.lucimarinus CCE9901 Ostreococcus lucimarinus CCE9901 GCF_000092065.1_ASM9206v1 21 13,204,888 0 0 34.92
68 green algae O.tauri RCC4221 Ostreococcus tauri GCF_000214015.3_version_140606 22 13,032,761 477 9,540 27.92
69 green algae V.carteri Eve Volvox carteri f. nagariensis GCF_000143455.1_v1.0 1,251 137,684,403 12,014 12,218,621 24.01
70 green foxtail Setaria viridis GCF_005286985.1_Setaria_viridis_v2.0 15 395,869,604 61 610,000 29.12
71 Hall's panicgrass Panicum hallii GCF_002211085.1_PHallii_v3.1 291 535,889,049 736 7,360,000 45.31
72 eudicots Himalayan balsam Impatiens glandulifera GCF_907164915.1_dImpGla2.1 1,115 654,031,307 858 307,343 47.04
73 horseweed Erigeron canadensis GCF_010389155.1_C_canadensis_v1 357 426,376,474 502 50,200 36.50
74 Indian licorice Abrus precatorius GCF_003935025.1_Abrus_2018 160 347,230,236 184 8,618 38.92
75 Japanese apricot Prunus mume GCF_000346735.1_P.mume_V1.0 8,164 234,030,239 15,597 16,851,380 23.26
76 Japanese morning glory Ipomoea nil GCF_001879475.1_Asagao_1.1 3,418 735,230,855 449 211,647 46.65
77 Japanese rice Oryza sativa Japonica Group GCF_001433935.1_IRGSP-1.0 58 374,422,835 925 118,258 39.08
78 eudicots lettuce (Salinas v8 2020) Lactuca sativa GCF_002870075.3_Lsat_Salinas_v8 6,831 2,388,971,937 351,533 181,402,475 53.01
79 lyrate rockcress Arabidopsis lyrata subsp. lyrata GCF_000004255.2_v.1.0 696 206,822,858 2,950 22,960,134 24.71
80 macadamia nut Macadamia integrifolia GCF_013358625.1_SCU_Mint_v3 2,644 744,937,181 22,059 11,169,871 34.40
81 maize Zea mays GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 687 2,182,786,008 708 3,807,886 78.52
82 malo sina (v2 2021) Oryza brachyantha GCF_000231095.2_ObraRS2 60 263,329,681 14 1,400 29.33
83 mango Mangifera indica GCF_011075055.1_CATAS_Mindica_2.1 250 391,961,648 169 82,844 32.64
84 monocots Aegilops tauschii subsp. strangulata GCF_002575655.2_Aet_v5.0 109,197 4,218,179,011 69,858 85,862,728 71.80
85 mosses Physcomitrella patens GCF_000002425.4_Phypa_V3 359 472,081,022 2,645 5,980,522 52.54
86 mulberry M.notabilis Morus notabilis GCF_000414095.1_ASM41409v2 31,301 320,378,613 15,541 16,272,868 34.55
87 mung bean Vigna radiata var. radiata GCF_000741045.1_Vradiata_ver6 2,465 463,563,650 96,870 33,558,735 34.89
88 muskmelon Cucumis melo GCF_000313045.1_ASM31304v1 31,463 374,928,380 29,172 39,388,261 33.22
89 narrow-leaved blue lupine Lupinus angustifolius GCF_001865875.1_LupAngTanjil_v1.0 13,573 609,203,021 44,657 4,159,247 38.12
90 New South Wales waratah (Mountain lineage 2021) Telopea speciosissima GCF_018873765.1_Tspe_v1 1,289 823,061,212 2,037 18,174 34.27
91 opium poppy Papaver somniferum GCF_003573695.1_ASM357369v1 34,381 2,715,530,335 31,183 5,407,606 55.85
92 orchid D.catenatum Dendrobium catenatum GCF_001605985.2_ASM160598v2 286,090 1,104,259,548 25,751 43,341,589 39.09
93 orchid P.equestris Phalaenopsis equestris GCF_001263595.1_ASM126359v1 89,584 1,064,200,343 98,814 80,500,320 42.22
94 papaya Carica papaya GCF_000150535.2_Papaya1.0 17,766 370,418,818 29,719 98,048,973 28.89
95 peach Prunus persica GCF_000346465.2_Prunus_persica_NCBIv2 192 227,569,171 2,368 2,772,483 28.75
96 peanut Arachis hypogaea GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 385 2,557,073,284 3,655 3,895,359 62.33
97 pecan Carya illinoinensis GCF_018687715.1_C.illinoinensisPawnee_v1 17 674,433,157 22 180,295 39.04
98 eudicots Peruvian cotton Gossypium raimondii GCF_000327365.2_Graimondii2_0v2 995 761,251,514 19,685 13,410,920 40.85
99 pigeon pea (v2 2016 BGI) Cajanus cajan GCF_000340665.2_C.cajan_V1.1 31,511 590,523,786 36,323 34,424,323 39.20
100 pineapple Ananas comosus GCF_001540865.1_ASM154086v1 3,129 382,055,938 25,542 6,802,254 38.96
101 pink shepherd's-purse Capsella rubella GCF_000375325.1_Caprub1_0 773 133,063,876 6,294 3,314,705 25.01
102 pistachio Pistacia vera GCF_008641045.1_PisVer_v2 1,865 671,280,010 16,367 1,075,147 36.35
103 pomegranate Punica granatum GCF_007655135.1_ASM765513v2 474 320,494,280 188 18,800 32.90
104 potato Solanum tuberosum GCF_000226075.1_SolTub_3.0 14,854 705,934,411 45,215 42,644,607 40.83
105 quinoa Chenopodium quinoa GCF_001683475.1_ASM168347v1 3,487 1,333,551,035 725 11,238,908 49.51
106 radish Raphanus sativus GCF_000801105.1_Rs1.0 10,676 426,614,037 28,041 54,594,507 26.67
107 rape Brassica napus GCF_000686985.2_Bra_napus_v2.0 1,471 976,190,593 32,639 68,842,306 32.93
108 eudicots red clover (HEN17-A07 2021) Trifolium pratense GCF_020283565.1_ARS_RC_1.1 90 414,027,294 231 121,850 37.05
109 eudicots rice bean (VRB-3 Himshakti 2021) Vigna umbellata GCF_018835915.1_ASM1883591v1 15,445 414,499,397 20,717 27,073,592 32.62
110 riverbank grape Vitis riparia GCF_004353265.1_EGFV_Vit.rip_1.0 175 500,266,779 1,095 6,066,783 35.29
111 rose gum (2021) Eucalyptus grandis GCF_016545825.1_ASM1654582v1 37 616,530,258 1,712 171,200 29.53
112 rose gum (BRASUZ1 2014) Eucalyptus grandis GCF_000612305.1_Egrandis1_0 4,951 691,429,809 27,773 50,634,931 27.36
113 rose of Sharon Hibiscus syriacus GCF_006381635.1_ASM638163v2 1,789 1,826,930,762 2 2,809 51.74
114 rubber tree Hevea brasiliensis GCF_001654055.1_ASM165405v1 7,453 1,373,527,118 40,863 79,796,328 61.60
115 sacred lotus Nelumbo nucifera GCF_000365185.1_Chinese_Lotus_1.1 3,603 804,647,751 175,846 97,029,293 30.21
116 saltwater cress Eutrema salsugineum GCF_000478725.1_Eutsalg1_0 638 243,110,105 3,020 4,665,582 32.12
117 scented satinash Syzygium oleosum GCF_900635055.1_Sole10x-PRISCAF 19,039 431,290,611 11,862 44,627,900 25.36
118 sesame Sesamum indicum GCF_000512975.1_S_indicum_v1.0 16,236 275,059,498 9,940 4,572,828 31.03
119 silver malletwood (14919 2019) Rhodamnia argentea GCF_900635035.1_Rarg10x-PRISCAF 15,781 414,815,504 7,529 26,068,170 25.40
120 silver malletwood (NSW1041297 2021) Rhodamnia argentea GCF_020921035.1_ASM2092103v1 75 346,714,100 36 3,600 28.26
121 silver poplar Populus alba GCF_005239225.1_ASM523922v1 1,287 416,985,780 0 0 38.38
122 sorghum Sorghum bicolor GCF_000003195.3_Sorghum_bicolor_NCBIv3 869 709,344,700 3,906 33,371,430 62.32
123 soybean (US DOE JGI-PGF v2 2021) Glycine max GCF_000004515.6_Glycine_max_v4.0 284 978,941,695 8,918 25,908,898 45.08
124 spider flower Tarenaya hassleriana GCF_000463585.1_ASM46358v1 12,249 249,929,577 24,824 30,779,355 31.65
125 spinach Spinacia oleracea GCF_002007265.1_ASM200726v1 78,263 869,946,296 137,086 38,941,226 52.85
126 spotted monkey flower Erythranthe guttata GCF_000504015.1_Mimgu1_0 2,212 322,166,964 15,528 21,004,488 40.62
127 stiff brome Brachypodium distachyon GCF_000005505.3_Brachypodium_distachyon_v3.0 11 271,298,618 27 423,960 21.35
128 sweet cherry Prunus avium GCF_002207925.1_PAV_r1.0 10,148 272,361,615 22,628 25,563,184 25.22
129 sweet orange Citrus sinensis GCF_000317415.1_Csi_valencia_1.0 4,844 327,829,540 12,539 26,598,031 29.54
130 switchgrass Panicum virgatum GCF_016808335.1_P.virgatum_v5 627 1,129,997,604 464 4,631,119 39.48
131 thale cress Arabidopsis thaliana GCF_000001735.4_TAIR10.1 7 119,668,634 357 186,207 22.66
132 thunder duke vine Tripterygium wilfordii GCF_013401445.1_ASM1340144v1 321 348,533,228 146 155,133 38.51
133 tobacco N.attenuata Nicotiana attenuata GCF_001879085.1_NIATTr2 37,194 2,365,682,703 119,817 275,168,947 48.67
134 tobacco N.tomentosiformis Nicotiana tomentosiformis GCF_000390325.2_Ntom_v01 159,548 1,688,466,321 213,074 45,906,503 53.84
135 tomato Solanum lycopersicum GCF_000188115.4_SL3.0 3,150 828,349,174 19,634 81,405,486 35.29
136 tree cotton Gossypium arboreum GCF_000612285.1_Gossypium_arboreum_v1.0 75,419 1,694,597,732 45,768 133,605,613 55.58
137 trilobed morning glory Ipomoea triloba GCF_003576645.1_ASM357664v1 17 461,989,178 31,256 24,277,444 36.55
138 valley oak (v3.2 2019) Quercus lobata GCF_001633185.2_ValleyOak3.2 2,002 845,947,251 1,673 1,923,068 37.85
139 vegetable marrow Cucurbita pepo subsp. pepo GCF_002806865.1_ASM280686v2 25,263 261,354,759 49,649 15,060,240 29.16
140 wax gourd Benincasa hispida GCF_009727055.1_ASM972705v1 1,791 912,951,219 24,524 14,778,634 49.69
141 white yam Dioscorea cayenensis subsp. rotundata GCF_009730915.1_TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22_25.fasta 2,254 584,308,608 4,760 4,746,954 40.61
142 wild cabbage Brassica oleracea var. oleracea GCF_000695525.1_BOL 32,886 488,954,160 52,140 43,004,782 31.22
143 wild Colombian cocoa Herrania umbratica GCF_002168275.1_ASM216827v2 6,074 234,039,246 119,056 12,987,944 32.45
144 wild emmer wheat (Zavitan Atlit2015 v2.1 2019) Triticum dicoccoides GCF_002162155.2_WEW_v2.1 148,296 10,677,097,747 344,589 353,604,870 96.69
145 wild Malaysian banana Musa acuminata subsp. malaccensis GCF_000313855.2_ASM31385v2 7,259 472,231,289 22,178 81,753,843 31.15
146 wild olive Olea europaea var. sylvestris GCF_002742605.1_O_europaea_v1 41,226 1,141,145,264 47,638 109,491,681 40.81
147 wild peanut A.duranensis Arachis duranensis GCF_000817695.2_Aradu1.1 1,507 1,084,261,490 133,967 144,244,720 45.37
148 wild peanut A.ipaensis Arachis ipaensis GCF_000816755.2_Araip1.1 548 1,353,504,219 122,617 96,468,404 53.63
149 wild soybean Glycine soja GCF_004193775.1_ASM419377v2 1,120 1,013,766,566 752 24,573,723 46.23
150 wild strawberry Fragaria vesca subsp. vesca GCF_000184155.1_FraVesHawaii_1.0 3,048 214,373,013 16,253 12,337,912 21.46
151 wild tomato S.pennellii Solanum pennellii GCF_001406875.1_SPENNV200 12 926,426,464 41,684 71,074,709 36.94
152 wine grape Vitis vinifera GCF_000003745.3_12X 1,907 486,196,837 13,440 15,055,470 34.81
153 winter squash Cucurbita maxima GCF_002738345.1_Cmax_1.0 8,299 271,413,401 17,224 5,965,588 35.69
154 wood tobacco Nicotiana sylvestris GCF_000393655.1_Nsyl 253,918 2,221,987,173 338,901 174,312,597 49.12
TOTALS:total assembly count 154 2,675,835 169,969,630,284 5,492,779 5,557,196,440  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 52 assemblies assembly stats track stats
Mammals 301 assemblies assembly stats track stats
Birds 123 assemblies assembly stats track stats
Fishes 142 assemblies assembly stats track stats
other vertebrates 51 assemblies assembly stats track stats
Invertebrates 415 assemblies assembly stats track stats
Plants 154 assemblies assembly stats track stats
Fungi 445 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 233 assemblies assembly stats track stats
legacy/superseded 162 assemblies assembly stats track stats