Primates Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base gaps assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 cpg
islands
1 black snub-nosed monkey
GCF_001698545.1		 59,210
(2.48 %)		 21,268
(1.88 %)		 57,267
(7.27 %)		 n/a 40.94
(94.13 %)		 149,843
(5.88 %)		 105,031
(100.00 %)		 5,516,548
(50.22 %)		 991,762
(2.45 %)		 16,354,078
(34.26 %)		 81,205
(1.19 %)
2 chimpanzee
GCF_002880755.1		 102,471
(3.40 %)		 20,506
(1.82 %)		 22,412
(1.23 %)		 n/a 40.71
(98.96 %)		 715
(1.04 %)		 5,254
(98.96 %)		 5,367,697
(53.49 %)		 996,217
(7.30 %)		 16,057,940
(39.54 %)		 46,151
(0.97 %)
3 Coquerel's sifaka
GCF_000956105.1		 29,382
(2.19 %)		 19,338
(2.10 %)		 21,771
(1.63 %)		 n/a 41.24
(74.51 %)		 276,544
(25.53 %)		 299,070
(74.47 %)		 3,442,360
(39.37 %)		 304,035
(0.59 %)		 13,333,892
(21.06 %)		 56,693
(1.58 %)
4 crab-eating macaque
GCF_000364345.1		 76,196
(3.30 %)		 20,279
(1.90 %)		 53,364
(7.19 %)		 54,367
(2.24 %)		 40.90
(95.16 %)		 80,474
(4.85 %)		 87,764
(95.15 %)		 5,274,951
(51.20 %)		 941,514
(3.24 %)		 15,778,510
(35.74 %)		 76,963
(1.14 %)
5 drill
GCF_000951045.1		 42,567
(2.25 %)		 20,254
(1.89 %)		 18,403
(1.23 %)		 n/a 40.73
(88.91 %)		 233,234
(11.12 %)		 246,054
(88.88 %)		 5,204,655
(49.43 %)		 834,739
(2.92 %)		 15,970,905
(31.27 %)		 42,242
(0.62 %)
6 gelada
GCF_003255815.1		 59,583
(2.42 %)		 20,568
(1.89 %)		 21,816
(1.26 %)		 n/a 40.96
(98.37 %)		 27,860
(1.63 %)		 15,308
(100.00 %)		 5,382,156
(51.37 %)		 982,616
(2.99 %)		 15,865,443
(36.88 %)		 93,504
(1.36 %)
7 golden snub-nosed monkey
GCF_007565055.1		 64,163
(2.41 %)		 21,208
(1.80 %)		 22,161
(1.21 %)		 n/a 40.90
(99.99 %)		 2,832
(0.01 %)		 3,257
(100.00 %)		 5,534,390
(53.28 %)		 1,226,902
(6.20 %)		 15,833,648
(40.58 %)		 99,771
(1.51 %)
8 gray mouse lemur
GCF_000165445.2		 74,354
(3.53 %)		 20,073
(1.89 %)		 23,087
(1.54 %)		 n/a 40.98
(95.94 %)		 43,364
(4.06 %)		 50,983
(95.94 %)		 3,998,981
(41.22 %)		 582,431
(1.47 %)		 14,808,653
(30.05 %)		 74,770
(2.56 %)
9 green monkey
GCF_000409795.2		 13
(0.00 %)		 20,068
(1.94 %)		 52,865
(7.35 %)		 n/a 40.81
(98.67 %)		 178,940
(1.35 %)		 163,018
(98.65 %)		 5,294,504
(49.89 %)		 980,479
(2.63 %)		 16,076,224
(35.62 %)		 50,033
(1.04 %)
10 human
GCF_000001405.39		 168,486
(4.42 %)		 23,203
(1.96 %)		 28,751
(1.83 %)		 n/a 41.04
(95.07 %)		 1,268
(4.93 %)		 46,029
(95.07 %)		 5,688,240
(52.30 %)		 1,037,733
(4.60 %)		 16,933,424
(36.88 %)		 56,646
(1.06 %)
11 Ma's night monkey
GCF_000952055.2		 55,074
(2.59 %)		 21,125
(1.92 %)		 22,298
(1.31 %)		 n/a 40.74
(94.86 %)		 83,930
(5.15 %)		 112,851
(94.85 %)		 5,023,646
(47.35 %)		 734,754
(2.02 %)		 15,854,219
(33.62 %)		 36,070
(0.90 %)
12 northern white-cheeked gibbon
GCF_006542625.1		 60,700
(2.64 %)		 20,360
(1.92 %)		 21,533
(1.26 %)		 n/a 41.03
(99.47 %)		 510
(0.53 %)		 2,762
(99.47 %)		 5,237,782
(51.76 %)		 902,578
(4.06 %)		 15,431,824
(38.31 %)		 71,450
(1.25 %)
13 olive baboon
GCF_008728515.1		 93,398
(3.84 %)		 20,421
(1.88 %)		 21,953
(1.24 %)		 n/a 40.89
(99.92 %)		 4,098
(0.08 %)		 11,145
(100.00 %)		 5,428,319
(51.03 %)		 937,126
(2.31 %)		 16,410,891
(37.14 %)		 77,919
(1.22 %)
14 Philippine tarsier
GCF_000164805.1		 35,799
(1.36 %)		 21,619
(1.23 %)		 25,630
(1.04 %)		 n/a 40.96
(98.61 %)		 155,714
(1.39 %)		 492,903
(98.61 %)		 6,348,416
(47.79 %)		 1,062,043
(2.47 %)		 18,768,491
(40.02 %)		 78,629
(1.04 %)
15 pig-tailed macaque
GCF_000956065.1		 90,971
(3.40 %)		 20,213
(1.88 %)		 21,097
(1.24 %)		 54,453
(2.27 %)		 40.98
(96.27 %)		 84,363
(3.74 %)		 94,057
(96.26 %)		 5,392,242
(50.03 %)		 936,458
(2.35 %)		 16,932,843
(34.70 %)		 82,528
(1.29 %)
16 pygmy chimpanzee
GCF_000258655.2		 59,345
(2.62 %)		 19,969
(1.95 %)		 19,765
(1.24 %)		 n/a 40.74
(82.95 %)		 156,797
(17.06 %)		 121,337
(82.94 %)		 5,055,535
(50.58 %)		 775,493
(1.63 %)		 15,570,598
(30.28 %)		 43,049
(0.71 %)
17 Rhesus monkey
GCF_003339765.1		 86,732
(3.15 %)		 20,503
(1.84 %)		 22,059
(1.25 %)		 n/a 41.00
(98.84 %)		 248
(1.16 %)		 3,268
(98.84 %)		 5,384,452
(52.35 %)		 993,786
(5.32 %)		 16,005,457
(38.50 %)		 86,250
(1.31 %)
18 small-eared galago
GCF_000181295.1		 38,534
(2.11 %)		 20,515
(1.82 %)		 48,938
(7.72 %)		 28,565
(1.48 %)		 41.11
(93.67 %)		 192,447
(6.36 %)		 200,099
(93.64 %)		 4,283,912
(38.95 %)		 454,913
(1.11 %)		 13,579,820
(30.37 %)		 21,834
(0.62 %)
19 sooty mangabey
GCF_000955945.1		 76,860
(3.18 %)		 20,122
(1.91 %)		 21,153
(1.27 %)		 53,925
(2.30 %)		 40.92
(97.87 %)		 65,329
(2.14 %)		 76,752
(97.86 %)		 5,330,417
(49.87 %)		 908,575
(2.58 %)		 16,543,149
(35.26 %)		 70,987
(1.22 %)
20 Sumatran orangutan
GCF_002880775.1		 58,198
(2.32 %)		 20,191
(1.79 %)		 21,577
(1.19 %)		 n/a 40.80
(99.29 %)		 553
(0.70 %)		 5,814
(99.30 %)		 5,397,715
(54.16 %)		 1,048,361
(8.01 %)		 15,948,624
(40.68 %)		 39,481
(0.87 %)
21 Ugandan red Colobus
GCF_002776525.3		 68,173
(2.68 %)		 21,830
(1.84 %)		 23,952
(1.23 %)		 n/a 40.60
(97.10 %)		 64,415
(2.91 %)		 46,654
(100.00 %)		 5,616,687
(51.27 %)		 1,066,759
(2.88 %)		 16,603,818
(37.49 %)		 71,078
(1.08 %)
22 white-tufted-ear marmoset
GCF_000004665.1		 58,109
(2.92 %)		 21,732
(1.90 %)		 21,605
(1.29 %)		 n/a 40.85
(94.45 %)		 187,214
(5.57 %)		 201,523
(94.43 %)		 5,022,252
(48.60 %)		 768,432
(2.30 %)		 15,303,718
(34.75 %)		 35,805
(0.79 %)
TOTALS:total assembly count 22

Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates