Primates Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 Angolan colobus
GCF_000951035.1
42,929
(2.28 %)
20,358
(1.94 %)
18,701
(1.25 %)
47,034
(1.83 %)
40.80
(90.25 %)
184,001
(9.77 %)
197,124
(90.23 %)
5,089,134
(49.30 %)
752,280
(2.06 %)
15,645,270
(32.03 %)
59,852
(0.82 %)
2 aye-aye
GCA_004027145.1
n/a 20,687
(1.84 %)
25,007
(1.35 %)
n/a 39.96
(99.96 %)
2,527
(0.01 %)
344,978
(99.99 %)
4,030,997
(43.30 %)
358,965
(0.72 %)
15,568,152
(32.48 %)
36,248
(1.03 %)
3 babakoto
GCA_004363605.1
n/a 23,765
(1.47 %)
45,432
(1.22 %)
n/a 41.26
(99.89 %)
4,885
(0.02 %)
1,248,425
(99.98 %)
4,664,535
(39.88 %)
529,666
(1.21 %)
16,469,880
(32.15 %)
71,607
(1.62 %)
4 black snub-nosed monkey (Rb0 v2 refseq 2016)
GCF_001698545.2
59,194
(2.48 %)
21,210
(1.88 %)
22,226
(1.22 %)
n/a 40.93
(94.12 %)
149,839
(5.89 %)
103,881
(100.00 %)
5,531,353
(50.33 %)
991,662
(2.45 %)
16,353,330
(34.27 %)
80,076
(1.15 %)
5 black-handed spider monkey
GCA_004024785.1
n/a 25,398
(1.69 %)
39,133
(1.17 %)
n/a 40.69
(99.91 %)
9,415
(0.03 %)
878,490
(99.97 %)
5,570,166
(47.38 %)
971,371
(2.96 %)
16,050,074
(38.92 %)
35,079
(0.81 %)
6 Bolivian titi
GCA_004027715.1
n/a 25,728
(1.58 %)
43,866
(1.11 %)
n/a 41.02
(99.91 %)
7,382
(0.02 %)
1,041,365
(99.98 %)
5,701,983
(47.08 %)
971,231
(2.78 %)
16,165,964
(39.80 %)
58,357
(1.13 %)
7 Bolivian squirrel monkey (100643 v2.1 BCM 2021)
GCF_016699345.2
53,017
(2.41 %)
20,575
(1.98 %)
21,201
(1.34 %)
n/a 40.96
(99.56 %)
1,073
(0.44 %)
2,786
(99.56 %)
5,041,616
(47.75 %)
946,197
(3.04 %)
14,604,089
(36.98 %)
37,271
(1.03 %)
8 brown lemur
GCA_004027275.1
n/a 25,130
(1.40 %)
50,986
(1.20 %)
n/a 41.37
(99.87 %)
3,706
(0.01 %)
1,697,619
(99.99 %)
4,981,207
(40.80 %)
1,645,565
(2.98 %)
15,859,279
(37.12 %)
71,873
(1.66 %)
9 chimpanzee
GCF_002880755.1
102,471
(3.40 %)
20,506
(1.82 %)
22,412
(1.23 %)
n/a 40.71
(98.96 %)
715
(1.04 %)
5,254
(98.96 %)
5,367,697
(53.49 %)
996,217
(7.30 %)
16,057,940
(39.54 %)
46,151
(0.97 %)
10 Coquerel's mouse lemur
GCA_004024645.1
n/a 24,097
(1.75 %)
40,335
(1.41 %)
n/a 40.86
(99.92 %)
10,667
(0.05 %)
451,546
(99.95 %)
4,093,701
(41.14 %)
571,851
(1.36 %)
14,292,721
(33.40 %)
70,569
(2.29 %)
11 Coquerel's sifaka 6110/Marcella (2015 refseq)
GCF_000956105.1
29,382
(2.19 %)
19,338
(2.10 %)
21,771
(1.63 %)
37,912
(1.86 %)
41.24
(74.51 %)
276,544
(25.53 %)
299,070
(74.47 %)
3,442,360
(39.37 %)
304,035
(0.59 %)
13,333,892
(21.06 %)
56,693
(1.58 %)
12 crab-eating macaque (2020 cy0333)
GCA_011100615.1
n/a 20,178
(1.86 %)
20,316
(1.21 %)
66,582
(2.60 %)
41.01
(98.70 %)
560
(1.30 %)
1,496
(98.70 %)
5,424,163
(51.37 %)
894,914
(3.04 %)
16,026,015
(36.93 %)
72,765
(1.24 %)
13 crab-eating macaque CE1976F Keio U/RIKEN 2021
GCF_012559485.2
87,255
(3.15 %)
20,054
(1.91 %)
20,456
(1.23 %)
n/a 40.98
(99.99 %)
605
(0.01 %)
401
(100.00 %)
5,272,147
(51.07 %)
941,877
(2.83 %)
15,772,147
(37.48 %)
90,103
(1.40 %)
14 De Brazza's monkey
GCA_004027615.1
n/a 26,901
(1.31 %)
46,619
(0.90 %)
n/a 41.18
(99.85 %)
7,534
(0.02 %)
2,126,734
(99.98 %)
6,751,052
(54.69 %)
1,804,857
(10.22 %)
16,954,884
(44.26 %)
104,630
(1.53 %)
15 drill
GCF_000951045.1
42,567
(2.25 %)
20,254
(1.89 %)
18,403
(1.23 %)
47,728
(1.78 %)
40.73
(88.91 %)
233,234
(11.12 %)
246,054
(88.88 %)
5,204,655
(49.43 %)
834,739
(2.92 %)
15,970,905
(31.27 %)
42,242
(0.62 %)
16 Francois's langur
GCF_009764315.1
80,215
(2.83 %)
20,478
(1.87 %)
20,685
(1.19 %)
n/a 41.12
(100.00 %)
766
(0.00 %)
1,016
(100.00 %)
5,471,638
(52.57 %)
928,320
(2.95 %)
15,652,774
(38.76 %)
129,321
(1.71 %)
17 gelada
GCF_003255815.1
59,583
(2.42 %)
20,568
(1.89 %)
21,816
(1.26 %)
43,940
(1.54 %)
40.96
(98.37 %)
27,860
(1.63 %)
15,308
(100.00 %)
5,382,156
(51.37 %)
982,616
(2.99 %)
15,865,443
(36.88 %)
93,504
(1.36 %)
18 golden snub-nosed monkey (2019 Northwest U)
GCF_007565055.1
64,163
(2.41 %)
21,208
(1.80 %)
22,161
(1.21 %)
n/a 40.90
(99.99 %)
2,832
(0.01 %)
3,257
(100.00 %)
5,534,390
(53.28 %)
1,226,902
(6.20 %)
15,833,648
(40.58 %)
99,771
(1.51 %)
19 gray mouse lemur
GCF_000165445.2
74,354
(3.53 %)
20,073
(1.89 %)
23,087
(1.54 %)
46,396
(2.43 %)
40.98
(95.94 %)
43,364
(4.06 %)
50,983
(95.94 %)
3,998,981
(41.22 %)
582,431
(1.47 %)
14,808,653
(30.05 %)
74,770
(2.56 %)
20 green monkey 1994-021 (2014 refseq)
GCF_000409795.2
76,050
(3.13 %)
20,068
(1.94 %)
52,865
(7.35 %)
28,078
(1.86 %)
40.81
(98.67 %)
178,940
(1.35 %)
163,018
(98.65 %)
5,294,504
(49.89 %)
980,479
(2.63 %)
16,076,224
(35.62 %)
50,033
(1.04 %)
21 green monkey WHO RCB 10-87
GCF_015252025.1
73,115
(2.94 %)
20,320
(1.83 %)
21,251
(1.19 %)
n/a 41.07
(99.75 %)
8,419
(0.25 %)
6,872
(100.00 %)
5,517,731
(51.10 %)
1,158,729
(3.95 %)
16,622,084
(37.82 %)
67,267
(1.70 %)
22 Hanuman langur
GCA_004025065.1
n/a 27,338
(1.54 %)
46,486
(1.04 %)
n/a 41.28
(99.89 %)
13,786
(0.05 %)
1,077,535
(99.95 %)
6,409,019
(52.08 %)
1,008,391
(1.92 %)
16,519,816
(39.37 %)
95,794
(1.26 %)
23 human (GRCh38.p13 2019)
GCF_000001405.39
173,552
(4.43 %)
23,203
(1.96 %)
28,751
(1.83 %)
n/a 41.04
(95.07 %)
1,268
(4.93 %)
46,029
(95.07 %)
5,688,240
(52.30 %)
1,037,733
(4.60 %)
16,933,424
(36.88 %)
56,646
(1.06 %)
24 human (WGS:JACSEW01 2021 VGP alt pseudohaplotype)
GCA_016700455.2
n/a 19,667
(1.95 %)
20,065
(1.23 %)
n/a 40.96
(99.60 %)
1,172
(0.40 %)
994
(100.00 %)
5,086,372
(51.37 %)
932,450
(3.67 %)
15,152,141
(37.48 %)
49,325
(1.10 %)
25 human (WGS:JACSEX01 2021 VGP)
GCA_016695395.2
n/a 20,401
(1.92 %)
20,682
(1.21 %)
n/a 40.87
(99.64 %)
1,217
(0.36 %)
950
(100.00 %)
5,350,025
(52.32 %)
1,006,502
(4.68 %)
15,969,368
(38.50 %)
50,826
(1.08 %)
26 human HG002 maternal
GCA_021951015.1
n/a 20,809
(1.82 %)
21,369
(1.18 %)
n/a 40.85
(99.95 %)
109
(0.05 %)
355
(100.00 %)
5,489,855
(53.93 %)
1,085,681
(8.26 %)
15,968,830
(40.95 %)
53,511
(1.32 %)
27 human HG002 paternal
GCA_021950905.1
n/a 20,014
(1.81 %)
20,716
(1.19 %)
n/a 40.87
(99.97 %)
117
(0.03 %)
514
(100.00 %)
5,293,356
(54.01 %)
1,100,786
(9.09 %)
15,122,569
(41.27 %)
52,546
(1.35 %)
28 human T2T CHM13 v2.0
GCA_009914755.4
108,944
(51.73 %)
20,844
(1.79 %)
21,287
(1.16 %)
n/a 40.75
(100.00 %)
n/a 25
(100.00 %)
5,591,082
(54.45 %)
1,155,353
(8.89 %)
16,163,340
(41.63 %)
52,408
(1.38 %)
29 lesser dwarf lemur
GCA_004024725.1
n/a 22,605
(1.80 %)
35,000
(1.46 %)
n/a 40.49
(99.93 %)
7,529
(0.03 %)
555,280
(99.97 %)
3,959,297
(40.17 %)
448,919
(1.48 %)
14,173,023
(34.36 %)
59,165
(1.83 %)
30 Ma's night monkey
GCF_000952055.2
55,074
(2.59 %)
21,125
(1.92 %)
22,298
(1.31 %)
51,845
(1.81 %)
40.74
(94.86 %)
83,930
(5.15 %)
112,851
(94.85 %)
5,023,646
(47.35 %)
734,754
(2.02 %)
15,854,219
(33.62 %)
36,070
(0.90 %)
31 mantled howler monkey
GCA_004027835.1
n/a 26,541
(1.65 %)
40,210
(1.16 %)
n/a 40.83
(99.88 %)
16,130
(0.05 %)
1,152,695
(99.95 %)
6,216,031
(48.47 %)
1,428,462
(4.68 %)
16,106,098
(41.41 %)
41,196
(0.86 %)
32 northern white-cheeked gibbon (2019 U. Washington)
GCF_006542625.1
60,700
(2.64 %)
20,360
(1.92 %)
21,533
(1.26 %)
n/a 41.03
(99.47 %)
510
(0.53 %)
2,762
(99.47 %)
5,237,782
(51.76 %)
902,578
(4.06 %)
15,431,824
(38.31 %)
71,450
(1.25 %)
33 olive baboon (2019 UCSF)
GCF_008728515.1
93,398
(3.84 %)
20,421
(1.88 %)
21,953
(1.24 %)
n/a 40.89
(99.92 %)
4,098
(0.08 %)
11,145
(100.00 %)
5,428,319
(51.03 %)
937,126
(2.31 %)
16,410,891
(37.14 %)
77,919
(1.22 %)
34 Panamanian white-faced capuchin
GCF_001604975.1
68,109
(2.82 %)
21,215
(2.01 %)
21,494
(1.35 %)
48,384
(2.19 %)
40.71
(96.08 %)
152,704
(3.94 %)
140,597
(96.06 %)
4,992,577
(47.59 %)
760,554
(1.72 %)
15,071,867
(33.72 %)
30,688
(0.83 %)
35 Pere David's macaque
GCF_024542745.1
74,798
(3.50 %)
20,233
(1.92 %)
20,671
(1.23 %)
n/a 41.00
(99.99 %)
367
(0.01 %)
623
(100.00 %)
5,363,770
(51.19 %)
1,033,990
(2.95 %)
15,744,042
(37.44 %)
90,119
(1.42 %)
36 Philippine tarsier
GCF_000164805.1
35,799
(1.36 %)
21,619
(1.23 %)
25,630
(1.04 %)
38,314
(1.07 %)
40.96
(98.61 %)
155,714
(1.39 %)
492,903
(98.61 %)
6,348,416
(47.79 %)
1,062,043
(2.47 %)
18,768,491
(40.02 %)
78,629
(1.04 %)
37 pig-tailed macaque
GCF_000956065.1
90,971
(3.40 %)
20,213
(1.88 %)
21,097
(1.24 %)
54,453
(2.27 %)
40.98
(96.27 %)
84,363
(3.74 %)
94,057
(96.26 %)
5,392,242
(50.03 %)
936,458
(2.35 %)
16,932,843
(34.70 %)
82,528
(1.29 %)
38 proboscis monkey
GCA_004027105.1
n/a 26,778
(1.60 %)
43,314
(1.07 %)
n/a 41.01
(99.89 %)
18,289
(0.06 %)
942,104
(99.94 %)
6,402,701
(53.25 %)
1,093,958
(2.69 %)
16,752,195
(39.70 %)
90,071
(1.21 %)
39 pygmy chimpanzee (Ulindi refseq 2015)
GCF_000258655.2
59,345
(2.62 %)
19,969
(1.95 %)
19,765
(1.24 %)
53,360
(2.07 %)
40.74
(82.95 %)
156,797
(17.06 %)
121,337
(82.94 %)
5,055,535
(50.58 %)
775,493
(1.63 %)
15,570,598
(30.28 %)
43,049
(0.71 %)
40 pygmy chimpanzee (Mhudiblu)
GCF_013052645.1
85,047
(3.05 %)
n/a 21,403
(1.16 %)
n/a 40.57
(98.80 %)
683
(1.20 %)
4,976
(98.80 %)
4,937,695
(46.41 %)
960,717
(8.41 %)
15,846,875
(40.31 %)
45,540
(0.95 %)
41 red guenon
GCA_004027335.1
n/a 26,554
(1.40 %)
43,056
(0.94 %)
n/a 41.19
(99.83 %)
13,075
(0.04 %)
2,577,035
(99.96 %)
7,718,970
(56.55 %)
2,223,871
(8.85 %)
18,186,363
(47.01 %)
109,358
(1.37 %)
42 red shanked douc langur
GCA_004024825.1
n/a 25,296
(1.59 %)
37,062
(1.07 %)
n/a 41.05
(99.87 %)
14,638
(0.05 %)
1,445,731
(99.95 %)
6,884,034
(54.54 %)
1,201,033
(2.95 %)
16,938,986
(42.00 %)
84,642
(1.12 %)
43 Rhesus monkey (2019 U. Washington)
GCF_003339765.1
86,732
(3.15 %)
20,503
(1.84 %)
22,059
(1.25 %)
64,228
(2.69 %)
41.00
(98.84 %)
248
(1.16 %)
3,268
(98.84 %)
5,384,452
(52.35 %)
993,786
(5.32 %)
16,005,457
(38.50 %)
86,250
(1.31 %)
44 ring-tailed lemur (2021 VGP)
GCF_020740605.2
55,883
(2.78 %)
18,659
(1.98 %)
20,542
(1.50 %)
n/a 41.36
(99.84 %)
210
(0.16 %)
185
(100.00 %)
3,432,734
(37.67 %)
518,071
(6.84 %)
12,916,577
(32.91 %)
50,626
(1.88 %)
45 Sclater's lemur (Harlow 2015)
GCA_001262665.1
n/a 19,832
(2.09 %)
23,882
(1.58 %)
n/a 40.77
(99.01 %)
254,375
(1.01 %)
292,741
(98.99 %)
3,621,134
(39.99 %)
434,393
(1.73 %)
13,470,199
(29.03 %)
47,664
(1.66 %)
46 silvery gibbon (HMO894 2020 UC Santa Cruz)
GCF_009828535.2
63,475
(2.65 %)
20,581
(1.94 %)
21,181
(1.20 %)
n/a 41.02
(97.81 %)
25,106
(2.19 %)
18,395
(100.00 %)
5,332,131
(51.09 %)
857,562
(2.26 %)
15,565,289
(36.84 %)
80,124
(1.26 %)
47 slow loris
GCA_004027815.1
n/a 26,771
(1.11 %)
44,247
(1.00 %)
n/a 40.68
(99.86 %)
9,648
(0.03 %)
1,946,791
(99.97 %)
6,230,312
(41.68 %)
688,924
(1.23 %)
16,892,392
(43.00 %)
39,326
(0.65 %)
48 small-eared galago
GCF_000181295.1
38,532
(2.11 %)
20,502
(1.81 %)
19,111
(1.43 %)
28,565
(1.48 %)
41.11
(93.67 %)
192,447
(6.36 %)
200,099
(93.64 %)
4,283,912
(38.95 %)
454,913
(1.11 %)
13,579,820
(30.37 %)
21,834
(0.62 %)
49 sooty mangabey
GCF_000955945.1
76,860
(3.18 %)
20,122
(1.91 %)
21,153
(1.27 %)
53,925
(2.30 %)
40.92
(97.87 %)
65,329
(2.14 %)
76,752
(97.86 %)
5,330,417
(49.87 %)
908,575
(2.58 %)
16,543,149
(35.26 %)
70,987
(1.22 %)
50 Sumatran orangutan (2018 refseq)
GCF_002880775.1
58,198
(2.32 %)
20,191
(1.79 %)
21,577
(1.19 %)
n/a 40.80
(99.29 %)
553
(0.70 %)
5,814
(99.30 %)
5,397,715
(54.16 %)
1,048,361
(8.01 %)
15,948,624
(40.68 %)
39,481
(0.87 %)
51 tamarin
GCA_004024885.1
n/a 27,243
(1.48 %)
39,487
(1.07 %)
n/a 40.80
(99.88 %)
8,881
(0.03 %)
1,675,070
(99.97 %)
6,528,752
(48.25 %)
1,388,724
(3.61 %)
16,922,829
(45.18 %)
38,319
(0.73 %)
52 tufted capuchin
GCF_009761245.1
80,991
(3.26 %)
21,426
(1.96 %)
22,733
(1.32 %)
n/a 40.84
(98.69 %)
43,216
(1.31 %)
59,885
(98.69 %)
5,056,660
(48.03 %)
783,505
(2.08 %)
15,052,178
(35.96 %)
32,890
(0.86 %)
53 Ugandan red Colobus (RC106 v4 2019)
GCF_002776525.4
63,704
(2.55 %)
21,347
(1.86 %)
23,056
(1.19 %)
n/a 40.84
(97.07 %)
57,757
(2.93 %)
34,372
(100.00 %)
5,504,117
(51.70 %)
961,351
(2.75 %)
16,208,033
(37.10 %)
71,046
(1.10 %)
54 western lowland gorilla (Kamilah 2019)
GCF_008122165.1
61,950
(2.48 %)
20,030
(1.78 %)
20,511
(1.13 %)
n/a 40.65
(98.49 %)
859
(1.51 %)
6,345
(98.49 %)
5,311,418
(50.53 %)
928,667
(8.55 %)
15,660,901
(40.30 %)
44,578
(0.92 %)
55 white-faced saki
GCA_004026645.1
n/a 24,422
(1.69 %)
35,685
(1.16 %)
n/a 40.61
(99.91 %)
11,316
(0.04 %)
903,646
(99.96 %)
5,716,344
(47.85 %)
1,234,286
(3.25 %)
16,179,207
(39.57 %)
41,862
(0.89 %)
56 white-fronted capuchin
GCA_004027755.1
n/a 27,984
(1.50 %)
47,384
(1.05 %)
n/a 41.14
(99.86 %)
13,723
(0.04 %)
1,552,889
(99.96 %)
6,023,876
(46.47 %)
1,002,459
(2.29 %)
16,673,880
(41.02 %)
37,693
(0.79 %)
57 white-tufted-ear marmoset (cj1700 2020)
GCF_009663435.1
107,273
(3.59 %)
21,782
(1.87 %)
21,450
(1.28 %)
n/a 40.85
(98.69 %)
380
(1.31 %)
1,429
(98.69 %)
5,135,344
(49.42 %)
823,949
(3.69 %)
15,140,752
(38.06 %)
36,875
(0.90 %)
58 white-tufted-ear marmoset (maternal 2020 VGP)
GCA_011078405.1
n/a 21,719
(1.91 %)
22,113
(1.37 %)
n/a 40.97
(99.58 %)
1,068
(0.42 %)
216
(100.00 %)
5,099,930
(50.01 %)
797,450
(2.45 %)
15,059,591
(37.67 %)
36,133
(0.92 %)
59 white-tufted-ear marmoset (paternal 2020 VGP)
GCA_011100535.1
n/a 20,978
(1.93 %)
21,563
(1.39 %)
n/a 41.04
(99.58 %)
788
(0.42 %)
336
(100.00 %)
4,869,004
(49.39 %)
746,577
(2.68 %)
14,347,286
(37.59 %)
35,222
(0.94 %)
60 white-tufted-ear marmoset (paternal X 2020 VGP)
GCA_011100555.1
n/a 21,747
(1.90 %)
22,403
(1.37 %)
n/a 40.95
(99.53 %)
959
(0.47 %)
353
(100.00 %)
5,123,968
(49.94 %)
785,181
(2.64 %)
15,163,086
(37.93 %)
36,768
(0.93 %)
TOTALS:total assembly count 60

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 59 assemblies assembly stats track stats
Mammals 357 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 76 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats