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Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Angolan colobus GCF_000951035.1 |
42,929 (2.28 %) |
20,358 (1.94 %) |
18,701 (1.25 %) |
47,034 (1.83 %) |
40.80 (90.25 %) |
184,001 (9.77 %) |
197,124 (90.23 %) |
5,089,134 (49.30 %) |
752,280 (2.06 %) |
15,645,270 (32.03 %) |
59,852 (0.82 %) |
| 2 | aye-aye GCA_004027145.1 |
n/a | 20,687 (1.84 %) |
25,007 (1.35 %) |
n/a | 39.96 (99.96 %) |
2,527 (0.01 %) |
344,978 (99.99 %) |
4,030,997 (43.30 %) |
358,965 (0.72 %) |
15,568,152 (32.48 %) |
36,248 (1.03 %) |
| 3 | babakoto GCA_004363605.1 |
n/a | 23,765 (1.47 %) |
45,432 (1.22 %) |
n/a | 41.26 (99.89 %) |
4,885 (0.02 %) |
1,248,425 (99.98 %) |
4,664,535 (39.88 %) |
529,666 (1.21 %) |
16,469,880 (32.15 %) |
71,607 (1.62 %) |
| 4 | black snub-nosed monkey (Rb0 v2 refseq 2016) GCF_001698545.2 |
59,194 (2.48 %) |
21,210 (1.88 %) |
22,226 (1.22 %) |
n/a | 40.93 (94.12 %) |
149,839 (5.89 %) |
103,881 (100.00 %) |
5,531,353 (50.33 %) |
991,662 (2.45 %) |
16,353,330 (34.27 %) |
80,076 (1.15 %) |
| 5 | black-handed spider monkey GCA_004024785.1 |
n/a | 25,398 (1.69 %) |
39,133 (1.17 %) |
n/a | 40.69 (99.91 %) |
9,415 (0.03 %) |
878,490 (99.97 %) |
5,570,166 (47.38 %) |
971,371 (2.96 %) |
16,050,074 (38.92 %) |
35,079 (0.81 %) |
| 6 | Bolivian titi GCA_004027715.1 |
n/a | 25,728 (1.58 %) |
43,866 (1.11 %) |
n/a | 41.02 (99.91 %) |
7,382 (0.02 %) |
1,041,365 (99.98 %) |
5,701,983 (47.08 %) |
971,231 (2.78 %) |
16,165,964 (39.80 %) |
58,357 (1.13 %) |
| 7 | Bolivian squirrel monkey (100643 v2.1 BCM 2021) GCF_016699345.2 |
53,017 (2.41 %) |
20,575 (1.98 %) |
21,201 (1.34 %) |
n/a | 40.96 (99.56 %) |
1,073 (0.44 %) |
2,786 (99.56 %) |
5,041,616 (47.75 %) |
946,197 (3.04 %) |
14,604,089 (36.98 %) |
37,271 (1.03 %) |
| 8 | brown lemur GCA_004027275.1 |
n/a | 25,130 (1.40 %) |
50,986 (1.20 %) |
n/a | 41.37 (99.87 %) |
3,706 (0.01 %) |
1,697,619 (99.99 %) |
4,981,207 (40.80 %) |
1,645,565 (2.98 %) |
15,859,279 (37.12 %) |
71,873 (1.66 %) |
| 9 | chimpanzee GCF_002880755.1 |
102,471 (3.40 %) |
20,506 (1.82 %) |
22,412 (1.23 %) |
n/a | 40.71 (98.96 %) |
715 (1.04 %) |
5,254 (98.96 %) |
5,367,697 (53.49 %) |
996,217 (7.30 %) |
16,057,940 (39.54 %) |
46,151 (0.97 %) |
| 10 | Coquerel's mouse lemur GCA_004024645.1 |
n/a | 24,097 (1.75 %) |
40,335 (1.41 %) |
n/a | 40.86 (99.92 %) |
10,667 (0.05 %) |
451,546 (99.95 %) |
4,093,701 (41.14 %) |
571,851 (1.36 %) |
14,292,721 (33.40 %) |
70,569 (2.29 %) |
| 11 | Coquerel's sifaka 6110/Marcella (2015 refseq) GCF_000956105.1 |
29,382 (2.19 %) |
19,338 (2.10 %) |
21,771 (1.63 %) |
37,912 (1.86 %) |
41.24 (74.51 %) |
276,544 (25.53 %) |
299,070 (74.47 %) |
3,442,360 (39.37 %) |
304,035 (0.59 %) |
13,333,892 (21.06 %) |
56,693 (1.58 %) |
| 12 | crab-eating macaque (2020 cy0333) GCA_011100615.1 |
n/a | 20,178 (1.86 %) |
20,316 (1.21 %) |
66,582 (2.60 %) |
41.01 (98.70 %) |
560 (1.30 %) |
1,496 (98.70 %) |
5,424,163 (51.37 %) |
894,914 (3.04 %) |
16,026,015 (36.93 %) |
72,765 (1.24 %) |
| 13 | crab-eating macaque CE1976F Keio U/RIKEN 2021 GCF_012559485.2 |
87,255 (3.15 %) |
20,054 (1.91 %) |
20,456 (1.23 %) |
n/a | 40.98 (99.99 %) |
605 (0.01 %) |
401 (100.00 %) |
5,272,147 (51.07 %) |
941,877 (2.83 %) |
15,772,147 (37.48 %) |
90,103 (1.40 %) |
| 14 | De Brazza's monkey GCA_004027615.1 |
n/a | 26,901 (1.31 %) |
46,619 (0.90 %) |
n/a | 41.18 (99.85 %) |
7,534 (0.02 %) |
2,126,734 (99.98 %) |
6,751,052 (54.69 %) |
1,804,857 (10.22 %) |
16,954,884 (44.26 %) |
104,630 (1.53 %) |
| 15 | drill GCF_000951045.1 |
42,567 (2.25 %) |
20,254 (1.89 %) |
18,403 (1.23 %) |
47,728 (1.78 %) |
40.73 (88.91 %) |
233,234 (11.12 %) |
246,054 (88.88 %) |
5,204,655 (49.43 %) |
834,739 (2.92 %) |
15,970,905 (31.27 %) |
42,242 (0.62 %) |
| 16 | Francois's langur GCF_009764315.1 |
80,215 (2.83 %) |
20,478 (1.87 %) |
20,685 (1.19 %) |
n/a | 41.12 (100.00 %) |
766 (0.00 %) |
1,016 (100.00 %) |
5,471,638 (52.57 %) |
928,320 (2.95 %) |
15,652,774 (38.76 %) |
129,321 (1.71 %) |
| 17 | gelada GCF_003255815.1 |
59,583 (2.42 %) |
20,568 (1.89 %) |
21,816 (1.26 %) |
43,940 (1.54 %) |
40.96 (98.37 %) |
27,860 (1.63 %) |
15,308 (100.00 %) |
5,382,156 (51.37 %) |
982,616 (2.99 %) |
15,865,443 (36.88 %) |
93,504 (1.36 %) |
| 18 | golden snub-nosed monkey (2019 Northwest U) GCF_007565055.1 |
64,163 (2.41 %) |
21,208 (1.80 %) |
22,161 (1.21 %) |
n/a | 40.90 (99.99 %) |
2,832 (0.01 %) |
3,257 (100.00 %) |
5,534,390 (53.28 %) |
1,226,902 (6.20 %) |
15,833,648 (40.58 %) |
99,771 (1.51 %) |
| 19 | gray mouse lemur GCF_000165445.2 |
74,354 (3.53 %) |
20,073 (1.89 %) |
23,087 (1.54 %) |
46,396 (2.43 %) |
40.98 (95.94 %) |
43,364 (4.06 %) |
50,983 (95.94 %) |
3,998,981 (41.22 %) |
582,431 (1.47 %) |
14,808,653 (30.05 %) |
74,770 (2.56 %) |
| 20 | green monkey 1994-021 (2014 refseq) GCF_000409795.2 |
76,050 (3.13 %) |
20,068 (1.94 %) |
52,865 (7.35 %) |
28,078 (1.86 %) |
40.81 (98.67 %) |
178,940 (1.35 %) |
163,018 (98.65 %) |
5,294,504 (49.89 %) |
980,479 (2.63 %) |
16,076,224 (35.62 %) |
50,033 (1.04 %) |
| 21 | green monkey WHO RCB 10-87 GCF_015252025.1 |
73,115 (2.94 %) |
20,320 (1.83 %) |
21,251 (1.19 %) |
n/a | 41.07 (99.75 %) |
8,419 (0.25 %) |
6,872 (100.00 %) |
5,517,731 (51.10 %) |
1,158,729 (3.95 %) |
16,622,084 (37.82 %) |
67,267 (1.70 %) |
| 22 | Hanuman langur GCA_004025065.1 |
n/a | 27,338 (1.54 %) |
46,486 (1.04 %) |
n/a | 41.28 (99.89 %) |
13,786 (0.05 %) |
1,077,535 (99.95 %) |
6,409,019 (52.08 %) |
1,008,391 (1.92 %) |
16,519,816 (39.37 %) |
95,794 (1.26 %) |
| 23 | human GCF_000001405.39 |
173,552 (4.43 %) |
23,203 (1.96 %) |
28,751 (1.83 %) |
n/a | 41.04 (95.07 %) |
1,268 (4.93 %) |
46,029 (95.07 %) |
5,688,240 (52.30 %) |
1,037,733 (4.60 %) |
16,933,424 (36.88 %) |
56,646 (1.06 %) |
| 24 | human HG002 maternal GCA_021951015.1 |
n/a | 20,809 (1.82 %) |
21,369 (1.18 %) |
n/a | 40.85 (99.95 %) |
109 (0.05 %) |
355 (100.00 %) |
5,489,855 (53.93 %) |
1,085,681 (8.26 %) |
15,968,830 (40.95 %) |
53,511 (1.32 %) |
| 25 | human HG002 paternal GCA_021950905.1 |
n/a | 20,014 (1.81 %) |
20,716 (1.19 %) |
n/a | 40.87 (99.97 %) |
117 (0.03 %) |
514 (100.00 %) |
5,293,356 (54.01 %) |
1,100,786 (9.09 %) |
15,122,569 (41.27 %) |
52,546 (1.35 %) |
| 26 | human T2T CHM13 v2.0 GCA_009914755.4 |
108,944 (51.73 %) |
20,844 (1.79 %) |
21,287 (1.16 %) |
n/a | 40.75 (100.00 %) |
n/a | 25 (100.00 %) |
5,591,082 (54.45 %) |
1,155,353 (8.89 %) |
16,163,340 (41.63 %) |
52,408 (1.38 %) |
| 27 | lesser dwarf lemur GCA_004024725.1 |
n/a | 22,605 (1.80 %) |
35,000 (1.46 %) |
n/a | 40.49 (99.93 %) |
7,529 (0.03 %) |
555,280 (99.97 %) |
3,959,297 (40.17 %) |
448,919 (1.48 %) |
14,173,023 (34.36 %) |
59,165 (1.83 %) |
| 28 | Ma's night monkey GCF_000952055.2 |
55,074 (2.59 %) |
21,125 (1.92 %) |
22,298 (1.31 %) |
51,845 (1.81 %) |
40.74 (94.86 %) |
83,930 (5.15 %) |
112,851 (94.85 %) |
5,023,646 (47.35 %) |
734,754 (2.02 %) |
15,854,219 (33.62 %) |
36,070 (0.90 %) |
| 29 | mantled howler monkey GCA_004027835.1 |
n/a | 26,541 (1.65 %) |
40,210 (1.16 %) |
n/a | 40.83 (99.88 %) |
16,130 (0.05 %) |
1,152,695 (99.95 %) |
6,216,031 (48.47 %) |
1,428,462 (4.68 %) |
16,106,098 (41.41 %) |
41,196 (0.86 %) |
| 30 | northern white-cheeked gibbon (2019 U. Washington) GCF_006542625.1 |
60,700 (2.64 %) |
20,360 (1.92 %) |
21,533 (1.26 %) |
n/a | 41.03 (99.47 %) |
510 (0.53 %) |
2,762 (99.47 %) |
5,237,782 (51.76 %) |
902,578 (4.06 %) |
15,431,824 (38.31 %) |
71,450 (1.25 %) |
| 31 | olive baboon (2019 UCSF) GCF_008728515.1 |
93,398 (3.84 %) |
20,421 (1.88 %) |
21,953 (1.24 %) |
n/a | 40.89 (99.92 %) |
4,098 (0.08 %) |
11,145 (100.00 %) |
5,428,319 (51.03 %) |
937,126 (2.31 %) |
16,410,891 (37.14 %) |
77,919 (1.22 %) |
| 32 | Panamanian white-faced capuchin GCF_001604975.1 |
68,109 (2.82 %) |
21,215 (2.01 %) |
21,494 (1.35 %) |
48,384 (2.19 %) |
40.71 (96.08 %) |
152,704 (3.94 %) |
140,597 (96.06 %) |
4,992,577 (47.59 %) |
760,554 (1.72 %) |
15,071,867 (33.72 %) |
30,688 (0.83 %) |
| 33 | Philippine tarsier GCF_000164805.1 |
35,799 (1.36 %) |
21,619 (1.23 %) |
25,630 (1.04 %) |
38,314 (1.07 %) |
40.96 (98.61 %) |
155,714 (1.39 %) |
492,903 (98.61 %) |
6,348,416 (47.79 %) |
1,062,043 (2.47 %) |
18,768,491 (40.02 %) |
78,629 (1.04 %) |
| 34 | pig-tailed macaque GCF_000956065.1 |
90,971 (3.40 %) |
20,213 (1.88 %) |
21,097 (1.24 %) |
54,453 (2.27 %) |
40.98 (96.27 %) |
84,363 (3.74 %) |
94,057 (96.26 %) |
5,392,242 (50.03 %) |
936,458 (2.35 %) |
16,932,843 (34.70 %) |
82,528 (1.29 %) |
| 35 | proboscis monkey GCA_004027105.1 |
n/a | 26,778 (1.60 %) |
43,314 (1.07 %) |
n/a | 41.01 (99.89 %) |
18,289 (0.06 %) |
942,104 (99.94 %) |
6,402,701 (53.25 %) |
1,093,958 (2.69 %) |
16,752,195 (39.70 %) |
90,071 (1.21 %) |
| 36 | pygmy chimpanzee (Ulindi refseq 2015) GCF_000258655.2 |
59,345 (2.62 %) |
19,969 (1.95 %) |
19,765 (1.24 %) |
53,360 (2.07 %) |
40.74 (82.95 %) |
156,797 (17.06 %) |
121,337 (82.94 %) |
5,055,535 (50.58 %) |
775,493 (1.63 %) |
15,570,598 (30.28 %) |
43,049 (0.71 %) |
| 37 | pygmy chimpanzee (Mhudiblu) GCF_013052645.1 |
85,047 (3.05 %) |
n/a | 21,403 (1.16 %) |
n/a | 40.57 (98.80 %) |
683 (1.20 %) |
4,976 (98.80 %) |
4,937,695 (46.41 %) |
960,717 (8.41 %) |
15,846,875 (40.31 %) |
45,540 (0.95 %) |
| 38 | red guenon GCA_004027335.1 |
n/a | 26,554 (1.40 %) |
43,056 (0.94 %) |
n/a | 41.19 (99.83 %) |
13,075 (0.04 %) |
2,577,035 (99.96 %) |
7,718,970 (56.55 %) |
2,223,871 (8.85 %) |
18,186,363 (47.01 %) |
109,358 (1.37 %) |
| 39 | red shanked douc langur GCA_004024825.1 |
n/a | 25,296 (1.59 %) |
37,062 (1.07 %) |
n/a | 41.05 (99.87 %) |
14,638 (0.05 %) |
1,445,731 (99.95 %) |
6,884,034 (54.54 %) |
1,201,033 (2.95 %) |
16,938,986 (42.00 %) |
84,642 (1.12 %) |
| 40 | Rhesus monkey (2019 U. Washington) GCF_003339765.1 |
86,732 (3.15 %) |
20,503 (1.84 %) |
22,059 (1.25 %) |
64,228 (2.69 %) |
41.00 (98.84 %) |
248 (1.16 %) |
3,268 (98.84 %) |
5,384,452 (52.35 %) |
993,786 (5.32 %) |
16,005,457 (38.50 %) |
86,250 (1.31 %) |
| 41 | ring-tailed lemur (2021 VGP) GCF_020740605.2 |
55,883 (2.78 %) |
18,659 (1.98 %) |
20,542 (1.50 %) |
n/a | 41.36 (99.84 %) |
210 (0.16 %) |
185 (100.00 %) |
3,432,734 (37.67 %) |
518,071 (6.84 %) |
12,916,577 (32.91 %) |
50,626 (1.88 %) |
| 42 | Sclater's lemur (Harlow 2015) GCA_001262665.1 |
n/a | 19,832 (2.09 %) |
23,882 (1.58 %) |
n/a | 40.77 (99.01 %) |
254,375 (1.01 %) |
292,741 (98.99 %) |
3,621,134 (39.99 %) |
434,393 (1.73 %) |
13,470,199 (29.03 %) |
47,664 (1.66 %) |
| 43 | silvery gibbon (HMO894 2020 UC Santa Cruz) GCF_009828535.2 |
63,475 (2.65 %) |
20,581 (1.94 %) |
21,181 (1.20 %) |
n/a | 41.02 (97.81 %) |
25,106 (2.19 %) |
18,395 (100.00 %) |
5,332,131 (51.09 %) |
857,562 (2.26 %) |
15,565,289 (36.84 %) |
80,124 (1.26 %) |
| 44 | slow loris GCA_004027815.1 |
n/a | 26,771 (1.11 %) |
44,247 (1.00 %) |
n/a | 40.68 (99.86 %) |
9,648 (0.03 %) |
1,946,791 (99.97 %) |
6,230,312 (41.68 %) |
688,924 (1.23 %) |
16,892,392 (43.00 %) |
39,326 (0.65 %) |
| 45 | small-eared galago GCF_000181295.1 |
38,532 (2.11 %) |
20,502 (1.81 %) |
19,111 (1.43 %) |
28,565 (1.48 %) |
41.11 (93.67 %) |
192,447 (6.36 %) |
200,099 (93.64 %) |
4,283,912 (38.95 %) |
454,913 (1.11 %) |
13,579,820 (30.37 %) |
21,834 (0.62 %) |
| 46 | sooty mangabey GCF_000955945.1 |
76,860 (3.18 %) |
20,122 (1.91 %) |
21,153 (1.27 %) |
53,925 (2.30 %) |
40.92 (97.87 %) |
65,329 (2.14 %) |
76,752 (97.86 %) |
5,330,417 (49.87 %) |
908,575 (2.58 %) |
16,543,149 (35.26 %) |
70,987 (1.22 %) |
| 47 | Sumatran orangutan (2018 refseq) GCF_002880775.1 |
58,198 (2.32 %) |
20,191 (1.79 %) |
21,577 (1.19 %) |
n/a | 40.80 (99.29 %) |
553 (0.70 %) |
5,814 (99.30 %) |
5,397,715 (54.16 %) |
1,048,361 (8.01 %) |
15,948,624 (40.68 %) |
39,481 (0.87 %) |
| 48 | tamarin GCA_004024885.1 |
n/a | 27,243 (1.48 %) |
39,487 (1.07 %) |
n/a | 40.80 (99.88 %) |
8,881 (0.03 %) |
1,675,070 (99.97 %) |
6,528,752 (48.25 %) |
1,388,724 (3.61 %) |
16,922,829 (45.18 %) |
38,319 (0.73 %) |
| 49 | tufted capuchin GCF_009761245.1 |
80,991 (3.26 %) |
21,426 (1.96 %) |
22,733 (1.32 %) |
n/a | 40.84 (98.69 %) |
43,216 (1.31 %) |
59,885 (98.69 %) |
5,056,660 (48.03 %) |
783,505 (2.08 %) |
15,052,178 (35.96 %) |
32,890 (0.86 %) |
| 50 | Ugandan red Colobus (RC106 v4 2019) GCF_002776525.4 |
63,704 (2.55 %) |
21,347 (1.86 %) |
23,056 (1.19 %) |
n/a | 40.84 (97.07 %) |
57,757 (2.93 %) |
34,372 (100.00 %) |
5,504,117 (51.70 %) |
961,351 (2.75 %) |
16,208,033 (37.10 %) |
71,046 (1.10 %) |
| 51 | western lowland gorilla (Kamilah 2019) GCF_008122165.1 |
61,950 (2.48 %) |
20,030 (1.78 %) |
20,511 (1.13 %) |
n/a | 40.65 (98.49 %) |
859 (1.51 %) |
6,345 (98.49 %) |
5,311,418 (50.53 %) |
928,667 (8.55 %) |
15,660,901 (40.30 %) |
44,578 (0.92 %) |
| 52 | white-faced saki GCA_004026645.1 |
n/a | 24,422 (1.69 %) |
35,685 (1.16 %) |
n/a | 40.61 (99.91 %) |
11,316 (0.04 %) |
903,646 (99.96 %) |
5,716,344 (47.85 %) |
1,234,286 (3.25 %) |
16,179,207 (39.57 %) |
41,862 (0.89 %) |
| 53 | white-fronted capuchin GCA_004027755.1 |
n/a | 27,984 (1.50 %) |
47,384 (1.05 %) |
n/a | 41.14 (99.86 %) |
13,723 (0.04 %) |
1,552,889 (99.96 %) |
6,023,876 (46.47 %) |
1,002,459 (2.29 %) |
16,673,880 (41.02 %) |
37,693 (0.79 %) |
| 54 | white-tufted-ear marmoset (cj1700 2020) GCF_009663435.1 |
107,273 (3.59 %) |
21,782 (1.87 %) |
21,450 (1.28 %) |
n/a | 40.85 (98.69 %) |
380 (1.31 %) |
1,429 (98.69 %) |
5,135,344 (49.42 %) |
823,949 (3.69 %) |
15,140,752 (38.06 %) |
36,875 (0.90 %) |
| 55 | white-tufted-ear marmoset (maternal 2020 VGP) GCA_011078405.1 |
n/a | 21,719 (1.91 %) |
22,113 (1.37 %) |
n/a | 40.97 (99.58 %) |
1,068 (0.42 %) |
216 (100.00 %) |
5,099,930 (50.01 %) |
797,450 (2.45 %) |
15,059,591 (37.67 %) |
36,133 (0.92 %) |
| 56 | white-tufted-ear marmoset (paternal 2020 VGP) GCA_011100535.1 |
n/a | 20,978 (1.93 %) |
21,563 (1.39 %) |
n/a | 41.04 (99.58 %) |
788 (0.42 %) |
336 (100.00 %) |
4,869,004 (49.39 %) |
746,577 (2.68 %) |
14,347,286 (37.59 %) |
35,222 (0.94 %) |
| 57 | white-tufted-ear marmoset (paternal X 2020 VGP) GCA_011100555.1 |
n/a | 21,747 (1.90 %) |
22,403 (1.37 %) |
n/a | 40.95 (99.53 %) |
959 (0.47 %) |
353 (100.00 %) |
5,123,968 (49.94 %) |
785,181 (2.64 %) |
15,163,086 (37.93 %) |
36,768 (0.93 %) |
| TOTALS: | total assembly count 57 | |||||||||||
| Additional hubs with collections of assemblies | |||
|---|---|---|---|
| Collection | Hub index pages: | Assembly statistics: | Track statistics: |
| Primates | 56 assemblies | assembly stats | track stats |
| Mammals | 336 assemblies | assembly stats | track stats |
| Birds | 164 assemblies | assembly stats | track stats |
| Fishes | 174 assemblies | assembly stats | track stats |
| other vertebrates | 69 assemblies | assembly stats | track stats |
| Invertebrates | 428 assemblies | assembly stats | track stats |
| Plants | 159 assemblies | assembly stats | track stats |
| Fungi | 445 assemblies | assembly stats | track stats |
| Viruses | 252 assemblies | assembly stats | track stats |
| VGP - Vertebrate Genome Project | 257 assemblies | assembly stats | track stats |
| legacy/superseded | 221 assemblies | assembly stats | track stats |