Primates Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of primates only.

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 black snub-nosed monkey
GCF_001698545.1
59,210
(2.48 %)
21,268
(1.88 %)
57,267
(7.27 %)
n/a 40.94
(94.13 %)
149,843
(5.88 %)
105,031
(100.00 %)
5,516,548
(50.22 %)
991,762
(2.45 %)
16,354,078
(34.26 %)
81,205
(1.19 %)
2 chimpanzee
GCF_002880755.1
102,471
(3.40 %)
20,506
(1.82 %)
22,412
(1.23 %)
n/a 40.71
(98.96 %)
715
(1.04 %)
5,254
(98.96 %)
5,367,697
(53.49 %)
996,217
(7.30 %)
16,057,940
(39.54 %)
46,151
(0.97 %)
3 Coquerel's sifaka
GCF_000956105.1
29,382
(2.19 %)
19,338
(2.10 %)
21,771
(1.63 %)
n/a 41.24
(74.51 %)
276,544
(25.53 %)
299,070
(74.47 %)
3,442,360
(39.37 %)
304,035
(0.59 %)
13,333,892
(21.06 %)
56,693
(1.58 %)
4 crab-eating macaque
GCF_000364345.1
76,196
(3.30 %)
20,279
(1.90 %)
53,364
(7.19 %)
54,367
(2.24 %)
40.90
(95.16 %)
80,474
(4.85 %)
87,764
(95.15 %)
5,274,951
(51.20 %)
941,514
(3.24 %)
15,778,510
(35.74 %)
76,963
(1.14 %)
5 drill
GCF_000951045.1
42,567
(2.25 %)
20,254
(1.89 %)
18,403
(1.23 %)
n/a 40.73
(88.91 %)
233,234
(11.12 %)
246,054
(88.88 %)
5,204,655
(49.43 %)
834,739
(2.92 %)
15,970,905
(31.27 %)
42,242
(0.62 %)
6 gelada
GCF_003255815.1
59,583
(2.42 %)
20,568
(1.89 %)
21,816
(1.26 %)
n/a 40.96
(98.37 %)
27,860
(1.63 %)
15,308
(100.00 %)
5,382,156
(51.37 %)
982,616
(2.99 %)
15,865,443
(36.88 %)
93,504
(1.36 %)
7 golden snub-nosed monkey
GCF_007565055.1
64,163
(2.41 %)
21,208
(1.80 %)
22,161
(1.21 %)
n/a 40.90
(99.99 %)
2,832
(0.01 %)
3,257
(100.00 %)
5,534,390
(53.28 %)
1,226,902
(6.20 %)
15,833,648
(40.58 %)
99,771
(1.51 %)
8 gray mouse lemur
GCF_000165445.2
74,354
(3.53 %)
20,073
(1.89 %)
23,087
(1.54 %)
n/a 40.98
(95.94 %)
43,364
(4.06 %)
50,983
(95.94 %)
3,998,981
(41.22 %)
582,431
(1.47 %)
14,808,653
(30.05 %)
74,770
(2.56 %)
9 green monkey
GCF_000409795.2
13
(0.00 %)
20,068
(1.94 %)
52,865
(7.35 %)
n/a 40.81
(98.67 %)
178,940
(1.35 %)
163,018
(98.65 %)
5,294,504
(49.89 %)
980,479
(2.63 %)
16,076,224
(35.62 %)
50,033
(1.04 %)
10 human
GCF_000001405.39
168,486
(4.42 %)
23,203
(1.96 %)
28,751
(1.83 %)
n/a 41.04
(95.07 %)
1,268
(4.93 %)
46,029
(95.07 %)
5,688,240
(52.30 %)
1,037,733
(4.60 %)
16,933,424
(36.88 %)
56,646
(1.06 %)
11 Ma's night monkey
GCF_000952055.2
55,074
(2.59 %)
21,125
(1.92 %)
22,298
(1.31 %)
n/a 40.74
(94.86 %)
83,930
(5.15 %)
112,851
(94.85 %)
5,023,646
(47.35 %)
734,754
(2.02 %)
15,854,219
(33.62 %)
36,070
(0.90 %)
12 northern white-cheeked gibbon
GCF_006542625.1
60,700
(2.64 %)
20,360
(1.92 %)
21,533
(1.26 %)
n/a 41.03
(99.47 %)
510
(0.53 %)
2,762
(99.47 %)
5,237,782
(51.76 %)
902,578
(4.06 %)
15,431,824
(38.31 %)
71,450
(1.25 %)
13 olive baboon
GCF_008728515.1
93,398
(3.84 %)
20,421
(1.88 %)
21,953
(1.24 %)
n/a 40.89
(99.92 %)
4,098
(0.08 %)
11,145
(100.00 %)
5,428,319
(51.03 %)
937,126
(2.31 %)
16,410,891
(37.14 %)
77,919
(1.22 %)
14 Philippine tarsier
GCF_000164805.1
35,799
(1.36 %)
21,619
(1.23 %)
25,630
(1.04 %)
n/a 40.96
(98.61 %)
155,714
(1.39 %)
492,903
(98.61 %)
6,348,416
(47.79 %)
1,062,043
(2.47 %)
18,768,491
(40.02 %)
78,629
(1.04 %)
15 pig-tailed macaque
GCF_000956065.1
90,971
(3.40 %)
20,213
(1.88 %)
21,097
(1.24 %)
54,453
(2.27 %)
40.98
(96.27 %)
84,363
(3.74 %)
94,057
(96.26 %)
5,392,242
(50.03 %)
936,458
(2.35 %)
16,932,843
(34.70 %)
82,528
(1.29 %)
16 pygmy chimpanzee
GCF_000258655.2
59,345
(2.62 %)
19,969
(1.95 %)
19,765
(1.24 %)
n/a 40.74
(82.95 %)
156,797
(17.06 %)
121,337
(82.94 %)
5,055,535
(50.58 %)
775,493
(1.63 %)
15,570,598
(30.28 %)
43,049
(0.71 %)
17 Rhesus monkey
GCF_003339765.1
86,732
(3.15 %)
20,503
(1.84 %)
22,059
(1.25 %)
n/a 41.00
(98.84 %)
248
(1.16 %)
3,268
(98.84 %)
5,384,452
(52.35 %)
993,786
(5.32 %)
16,005,457
(38.50 %)
86,250
(1.31 %)
18 small-eared galago
GCF_000181295.1
38,534
(2.11 %)
20,515
(1.82 %)
48,938
(7.72 %)
28,565
(1.48 %)
41.11
(93.67 %)
192,447
(6.36 %)
200,099
(93.64 %)
4,283,912
(38.95 %)
454,913
(1.11 %)
13,579,820
(30.37 %)
21,834
(0.62 %)
19 sooty mangabey
GCF_000955945.1
76,860
(3.18 %)
20,122
(1.91 %)
21,153
(1.27 %)
53,925
(2.30 %)
40.92
(97.87 %)
65,329
(2.14 %)
76,752
(97.86 %)
5,330,417
(49.87 %)
908,575
(2.58 %)
16,543,149
(35.26 %)
70,987
(1.22 %)
20 Sumatran orangutan
GCF_002880775.1
58,198
(2.32 %)
20,191
(1.79 %)
21,577
(1.19 %)
n/a 40.80
(99.29 %)
553
(0.70 %)
5,814
(99.30 %)
5,397,715
(54.16 %)
1,048,361
(8.01 %)
15,948,624
(40.68 %)
39,481
(0.87 %)
21 Ugandan red Colobus
GCF_002776525.3
68,173
(2.68 %)
21,830
(1.84 %)
23,952
(1.23 %)
n/a 40.60
(97.10 %)
64,415
(2.91 %)
46,654
(100.00 %)
5,616,687
(51.27 %)
1,066,759
(2.88 %)
16,603,818
(37.49 %)
71,078
(1.08 %)
22 white-tufted-ear marmoset
GCF_000004665.1
58,109
(2.92 %)
21,732
(1.90 %)
21,605
(1.29 %)
n/a 40.85
(94.45 %)
187,214
(5.57 %)
201,523
(94.43 %)
5,022,252
(48.60 %)
768,432
(2.30 %)
15,303,718
(34.75 %)
35,805
(0.79 %)
TOTALS:total assembly count 22

Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates