Plants Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of plants only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 A. eriantha gooseberry (White 2019)[IGV] Actinidia eriantha GCA_004150315.1_ASM415031v1 SAMN09643536 PRJNA480681 2019-02-08
2 A.eriantha eudicots (MHT-2021 2021)[IGV] Actinidia eriantha GCF_019202715.1_MaoHua_MHT SAMN18715780 PRJNA721303 2021-07-13
3 adzuki bean (Jingnong 6 2015)[IGV] Vigna angularis GCF_001190045.1_Vigan1.1 SAMN03074979 PRJNA261643 2015-07-31
4 adzuki bean (LongXiaoDou No.4 2021)[IGV] Vigna angularis GCF_016808095.1_ASM1680809v1 SAMN14776547 PRJNA629451 2021-02-04
5 African boxthorn (CSIRO_LF1 2023)[IGV] Lycium ferocissimum GCF_029784015.1_AGI_CSIRO_Lferr_CH_V1 SAMN32214984 PRJNA911933 2023-04-18
6 African oil palm[IGV] Elaeis guineensis GCF_000442705.1_EG5 SAMN02981535 PRJNA192219 2013-08-13
7 African rice (2021)[IGV] Oryza glaberrima GCF_000147395.1_OglaRS2 SAMN02981267 PRJNA13765 2021-03-10
8 algarrobo blanco[IGV] Prosopis alba GCF_004799145.1_ASM479914v1 SAMN10988825 PRJNA514254 2019-04-17
9 almond[IGV] Prunus dulcis GCF_902201215.1_ALMONDv2 SAMEA5704668 PRJEB32994 2019-10-10
10 annual mercury (primary hap 2022)[IGV] Mercurialis annua GCF_937616625.1_ddMerAnnu1.1 SAMEA7522176 PRJEB52246 2022-05-03
11 annual mercury (primary hap 2022)[IGV] Mercurialis annua GCF_937616625.2_ddMerAnnu1.2 SAMEA7522176 PRJEB52246 2022-10-31
12 annual ryegrass (FL_2022 2022)[IGV] Lolium rigidum GCF_022539505.1_APGP_CSIRO_Lrig_0.1 SAMN25144995 PRJNA799061 2022-03-14
13 apple (Golden Delicious X9273 #13 2017 refseq)[IGV] Malus domestica GCF_002114115.1_ASM211411v1 SAMN05603590 PRJNA339703 2017-05-03
14 Asian cultivated rice (Carolina Gold Select 2019)[IGV] Oryza sativa GCA_004007595.1_JHU_CGRice_1.0 SAMN10380581 PRJNA503892 2019-01-11
15 Barbados nut[IGV] Jatropha curcas GCF_014843425.1_RJC1_Hi-C SAMN15963826 PRJNA601606 2020-10-05
16 barrel medic (2018)[IGV] Medicago truncatula GCF_003473485.1_MtrunA17r5.0-ANR SAMN08400029 PRJNA431767 2018-09-12
17 barrel medic (A17 2014)[IGV] Medicago truncatula GCF_000219495.3_MedtrA17_4.0 SAMN02299339 PRJNA10791 2014-06-18
18 barrel medic (HM340 2017)[IGV] Medicago truncatula GCA_002024945.1_R108_v._1.0 SAMN04571790 PRJNA368719 2017-03-13
19 bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 alternate hap 2023)[IGV] Umbellularia californica GCA_028538565.1_dmUmbCali1.0.hap2 SAMN30524115 PRJNA887119 2023-02-07
20 bay (USA: Berkeley CA var. californica CCGP_DODD_UMBCAL_S1 primary hap 2023)[IGV] Umbellularia californica GCA_028534965.1_dmUmbCali1.0.hap1 SAMN30524115 PRJNA887120 2023-02-07
21 beet (v1 EL10 2021 USDA)[IGV] Beta vulgaris subsp. vulgaris GCF_002917755.1_EL10_1.0 SAMN07736104 PRJNA413079 2021-10-13
22 beet (v2 EL10 2022 USDA)[IGV] Beta vulgaris subsp. vulgaris GCF_026745355.1_EL10.2 SAMN23167344 PRJNA780534 2022-12-09
23 bell pepper eudicots (UCD-10X-F1 2018)[IGV] Capsicum annuum GCF_002878395.1_UCD10Xv1.1 SAMN06445824 PRJNA376668 2018-01-30
24 bigberry manzanita (GLNDR_RDG_Rd-6 alternate hap 2021)[IGV] Arctostaphylos glauca GCA_019985075.1_ddArcGlau1.0.a SAMN19489519 PRJNA735272 2021-09-14
25 bigberry manzanita (GLNDR_RDG_Rd-6 primary hap 2022)[IGV] Arctostaphylos glauca GCA_019985065.2_ddArcGlau1.1p SAMN19489519 PRJNA735273 2022-02-20
26 birdsfoot trefoil (B-129 2022)[IGV] Lotus japonicus GCF_012489685.1_LjGifu_v1.2 SAMN10284201 PRJNA498060 2022-11-15
27 bitter melon[IGV] Momordica charantia GCF_001995035.1_ASM199503v1 SAMD00048603 PRJDB4642 2016-12-26
28 black cottonwood (Ptri.A.LA.226.w1 alternate hap 2023)[IGV] Populus trichocarpa GCA_028534865.1_ddPopTric1.0.hap2 SAMN29046698 PRJNA887116 2023-02-07
29 black cottonwood (Ptri.A.LA.226.w1 primary hap 2023)[IGV] Populus trichocarpa GCA_028534895.1_ddPopTric1.0.hap1 SAMN29046698 PRJNA887117 2023-02-07
30 black cottonwood (v4.1 Nisqually-1 2022)[IGV] Populus trichocarpa GCF_000002775.5_P.trichocarpa_v4.1 SAMN02953657 PRJNA10772 2022-10-20
31 black tea[IGV] Camellia sinensis GCF_004153795.1_AHAU_CSS_1 SAMN06329939 PRJNA510226 2019-02-11
32 blue lilly pilly tree (NSW1041296 2022)[IGV] Syzygium oleosum GCF_021117445.2_Sole_v2.1 SAMN19699973 PRJNA737564 2022-10-03
33 bread wheat (Chinese Spring 2020)[IGV] Triticum aestivum GCA_002220415.3_Triticum_4.0 SAMN07284949 PRJNA392179 2020-03-24
34 bread wheat (Chinese Spring 2021, UC Davis)[IGV] Triticum aestivum GCF_018294505.1_IWGSC_CS_RefSeq_v2.1 SAMN16451473 PRJNA669381 2021-05-06
35 bread wheat (Chinese Spring IWGSC RefSeq v1.0 2018)[IGV] Triticum aestivum GCA_900519105.1_iwgsc_refseqv1.0 SAMEA4791365 PRJEB27788 2018-08-20
36 bread wheat (Fielder 2021)[IGV] Triticum aestivum GCA_907166925.1_wheat_cv_fielder_v1_assembly SAMEA8666907 PRJEB44721 2021-07-14
37 cacao[IGV] Theobroma cacao GCF_000208745.1_Criollo_cocoa_genome_V2 SAMEA4028428 PRJEB14326 2016-07-09
38 California black walnut (Jcal.S.LA.6 alternate hap 2022)[IGV] Juglans californica GCA_023349545.1_dhJugClai1.0.a SAMN25062275 PRJNA807333 2022-05-12
39 California black walnut (Jcal.S.LA.6 primary hap 2022)[IGV] Juglans californica GCA_023349395.1_dhJugCali1.0.p SAMN25062275 PRJNA807334 2022-05-12
40 California scrub oak (Qber.S.LA.60 alternate hap 2023)[IGV] Quercus berberidifolia GCA_028535905.1_dhQueBerb1.0.hap2 SAMN29046699 PRJNA887128 2023-02-07
41 California scrub oak (Qber.S.LA.60 primary hap 2023)[IGV] Quercus berberidifolia GCA_028535815.1_dhQueBerb1.0.hap1 SAMN29046699 PRJNA887129 2023-02-07
42 Cannabis sativa ( 2020)[IGV] Cannabis sativa GCA_016165845.1_Cannbio-2 SAMN16364704 PRJNA667278 2020-12-22
43 Cannabis sativa (Cannatonic 2016)[IGV] Cannabis sativa GCA_001865755.1_ASM186575v1 SAMN05941636 PRJNA350523 2016-11-03
44 Cannabis sativa (Harvard OEB 2019)[IGV] Cannabis sativa GCF_900626175.2_cs10 SAMEA5040675 PRJEB29284 2019-02-14
45 Cannabis sativa (Jamaican Lion DASH 2019)[IGV] Cannabis sativa GCA_003660325.2_Oct15_3.7Mb_N50_Jamaican_Lion_Assembly SAMN09851581 PRJNA486541 2019-02-11
46 Cannabis sativa (Jamaican Lion Mother 2020)[IGV] Cannabis sativa GCA_012923435.1_JL_Mother SAMN12904853 PRJNA575581 2020-04-28
47 Cannabis sativa (JL 2020)[IGV] Cannabis sativa GCA_013030365.1_ASM1303036v1 SAMN12606152 PRJNA562042 2020-05-12
48 capsicum (Zunla-1 2015 refseq)[IGV] Capsicum annuum GCF_000710875.1_Pepper_Zunla_1_Ref_v1.0 SAMN01906946 PRJNA186921 2015-03-11
49 carrot[IGV] Daucus carota subsp. sativus GCF_001625215.1_ASM162521v1 SAMN03216637 PRJNA268187 2016-05-06
50 carrot (DH1 2023)[IGV] Daucus carota subsp. sativus GCF_001625215.2_DH1_v3.0 SAMN03216637 PRJNA268187 2023-10-20
51 cassava (60444 2018)[IGV] Manihot esculenta GCA_003957885.1_ASM395788v1 SAMN10523279 PRJNA508471 2018-12-21
52 cassava (v8 AM560-2 2021 DOE)[IGV] Manihot esculenta GCF_001659605.2_M.esculenta_v8 SAMN04116956 PRJNA234389 2021-08-13
53 castor bean (Hale 2011 JCVI)[IGV] Ricinus communis GCF_000151685.1_JCVI_RCG_1.1 SAMN02953659 PRJNA16585 2011-07-07
54 castor bean (wild-type WT05 2021)[IGV] Ricinus communis GCF_019578655.1_ASM1957865v1 SAMN13269094 PRJNA589181 2021-08-12
55 Ceratopteris richardii C-fern (Hn-n 2020)[IGV] Ceratopteris richardii GCA_011386875.1_ASM1138687v1 SAMN10638562 PRJNA511033 2020-03-16
56 Ceratopteris richardii C-fern (Hn-n Whitten #5841 2020)[IGV] Ceratopteris richardii GCA_009866685.1_CFernv1.1 SAMN10622321 PRJNA511033 2020-01-14
57 chia eudicots (TCC Black 2014 2022)[IGV] Salvia hispanica GCF_023119035.1_UniMelb_Shisp_WGS_1.0 SAMN27737700 PRJNA830713 2022-04-29
58 chickpea[IGV] Cicer arietinum GCF_000331145.1_ASM33114v1 SAMN02981489 PRJNA175619 2013-01-16
59 China rose (Old Blush v2 2019)[IGV] Rosa chinensis GCF_002994745.2_RchiOBHm-V2 SAMN07737764 PRJNA413292 2019-01-15
60 Chinese keys (BR_CEBAR01 2022)[IGV] Boesenbergia rotunda GCA_024364735.1_CEBAR_Bro_1.0 SAMN18237360 PRJNA712941 2022-07-21
61 Chinese white pear (Dangshansuli 2012)[IGV] Pyrus x bretschneideri GCF_000315295.1_Pbr_v1.0 SAMN01797448 PRJNA157875 2012-12-03
62 Chinese white pear (Hongxiangsu 2021)[IGV] Pyrus x bretschneideri GCF_019419815.1_Pyrus_bretschneideri_v1 SAMN12751541 PRJNA565550 2021-07-30
63 clementine[IGV] Citrus x clementina GCF_000493195.1_Citrus_clementina_v1.0 SAMN02389527 PRJNA223006 2013-11-08
64 climbing nightshade (primary hap 2022)[IGV] Solanum dulcamara GCF_947179165.1_daSolDulc1.2 SAMEA7522044 PRJEB56942 2022-12-02
65 club-mosses (2010)[IGV] Selaginella moellendorffii GCF_000143415.4_v1.0 SAMN02981255 PRJNA13078 2010-07-06
66 club-mosses (Aurea 2015)[IGV] Selaginella kraussiana GCA_001021135.1_ASM102113v1 SAMN03704959 PRJNA284650 2015-06-05
67 coffee C.arabica[IGV] Coffea arabica GCF_003713225.1_Cara_1.0 SAMN10272287 PRJNA497895 2018-11-08
68 coffee C.eugenioides[IGV] Coffea eugenioides GCF_003713205.1_Ceug_1.0 SAMN10269643 PRJNA497891 2018-11-08
69 common bean[IGV] Phaseolus vulgaris GCF_000499845.1_PhaVulg1_0 SAMN02981484 PRJNA41439 2013-11-29
70 common fig (Dottato GU2019 2019)[IGV] Ficus carica GCA_009761775.1_UNIPI_FiCari_1.0 SAMN12770241 PRJNA565858 2019-12-18
71 common jujube (AT0 2021)[IGV] Ziziphus jujuba var. spinosa GCF_020796205.1_ASM2079620v1 SAMN11665524 PRJNA542987 2021-11-08
72 common jujube (Dongzao 2015)[IGV] Ziziphus jujuba GCF_000826755.1_ZizJuj_1.1 SAMN02918186 PRJNA251714 2015-02-06
73 common jujube (Dongzao 2023)[IGV] Ziziphus jujuba GCF_031755915.1_ASM3175591v1 SAMN37344887 PRJNA1014986 2023-09-20
74 common reed (primary hap 2023)[IGV] Phragmites australis GCF_958298935.1_lpPhrAust1.1 SAMEA10369659 PRJEB64034 2023-07-06
75 common sunflower[IGV] Helianthus annuus GCF_002127325.2_HanXRQr2.0-SUNRISE SAMN05868438 PRJNA345532 2020-07-15
76 common tobacco[IGV] Nicotiana tabacum GCF_000715135.1_Ntab-TN90 SAMN02316627 PRJNA208209 2014-05-29
77 cork oak (v2 HL8 2018)[IGV] Quercus suber GCF_002906115.2_CorkOak1.0 SAMN07312269 PRJNA392919 2018-01-29
78 cotton G.hirsutum (BGI 2015)[IGV] Gossypium hirsutum GCF_000987745.1_ASM98774v1 SAMN03342414 PRJNA259930 2015-05-05
79 cotton G.hirsutum (HudsonAlpha 2021)[IGV] Gossypium hirsutum GCF_007990345.1_Gossypium_hirsutum_v2.1 SAMN11351207 PRJNA515894 2021-02-25
80 cotton G.raimondii[IGV] Gossypium raimondii GCF_000327365.1_Graimondii2_0 SAMN02743920 PRJNA171262 2012-12-20
81 cowpea (IT97K-499-35 v2 2019)[IGV] Vigna unguiculata GCF_004118075.2_ASM411807v2 SAMN06674009 PRJNA381312 2019-01-30
82 crookneck pumpkin[IGV] Cucurbita moschata GCF_002738365.1_Cmos_1.0 SAMN06886672 PRJNA385310 2017-10-31
83 cucumber[IGV] Cucumis sativus GCF_000004075.3_Cucumber_9930_V3 SAMN02953750 PRJNA33619 2019-11-15
84 cultivated vanilla (Daphna alternate hap 2020)[IGV] Vanilla planifolia GCA_016413885.1_Elo_Vpla-B_alternate_1.0 SAMN14973820 PRJNA668740 2020-12-28
85 cultivated vanilla (Daphna primary hap 2020)[IGV] Vanilla planifolia GCA_016413895.1_Elo_Vpla-A_principal_1.0 SAMN14973820 PRJNA633886 2020-12-28
86 damask rose (2016)[IGV] Rosa x damascena GCA_001662545.1_ASM166254v1 SAMN05017599 PRJNA322107 2016-06-13
87 date palm (Barhee BC4 2019)[IGV] Phoenix dactylifera GCF_009389715.1_palm_55x_up_171113_PBpolish2nd_filt_p SAMN05011615 PRJNA322046 2019-11-04
88 date palm (Khalas 2013)[IGV] Phoenix dactylifera GCF_000413155.1_DPV01 SAMN02981540 PRJNA83433 2013-06-24
89 date-plum (Yz01 2020)[IGV] Diospyros lotus GCF_014633365.1_ASM1463336v1 SAMN15573978 PRJNA646788 2020-09-21
90 dessert banana (baxijiao 2024)[IGV] Musa acuminata AAA Group GCF_036884655.1_Cavendish_Baxijiao_AAA SAMN34246735 PRJNA957115 2024-02-28
91 domesticated barley (H.vulgare 2021 refseq)[IGV] Hordeum vulgare subsp. vulgare GCF_904849725.1_MorexV3_pseudomolecules_assembly SAMEA7384724 PRJEB40589 2021-04-01
92 durian[IGV] Durio zibethinus GCF_002303985.1_Duzib1.0 SAMN07563003 PRJNA400310 2017-09-15
93 eggplant (2014)[IGV] Solanum virginianum GCA_000787875.1_SME_r2.5.1 n/a PRJDB1505 2014-09-30
94 English oak (primary hap 2022)[IGV] Quercus robur GCF_932294415.1_dhQueRobu3.1 SAMEA9089039 PRJEB51283 2022-03-11
95 English walnut[IGV] Juglans regia GCF_001411555.2_Walnut_2.0 SAMN03704235 PRJNA291087 2020-07-08
96 eudicot A.glutinosa (primary hap 2023)[IGV] Alnus glutinosa GCF_958979055.1_dhAlnGlut1.1 SAMEA7522050 PRJEB64426 2023-07-19
97 eudicot C.sativa (Pink pepper KNU-18-1 2023)[IGV] Cannabis sativa GCF_029168945.1_ASM2916894v1 SAMN31276239 PRJNA890313 2023-03-14
98 eudicot G.bilobum (WA Gb01-03AN 2023)[IGV] Gastrolobium bilobum GCF_033153095.1_APGP_CSIRO_Gbil_v1 SAMN37277157 PRJNA1012825 2023-10-31
99 eudicot P.nigra (primary hap 2023)[IGV] Populus nigra GCF_951802175.1_ddPopNigr1.1 SAMEA110450206 PRJEB62629 2023-05-27
100 eudicot R.rugosa (primary hap 2023)[IGV] Rosa rugosa GCF_958449725.1_drRosRugo1.1 SAMEA111431194 PRJEB64184 2023-07-18
101 Euphrates poplar (v2 2014)[IGV] Populus euphratica GCF_000495115.2_PopEup_1.0 SAMN02981499 PRJNA178692 2014-08-12
102 European crab apple (2022)[IGV] Malus sylvestris GCF_916048215.2_drMalSylv7.2 SAMEA9197672 PRJEB47504 2022-07-06
103 European hazelnut (Tombul 2020)[IGV] Corylus avellana GCF_901000735.1_CavTom2PMs-1.0 SAMEA5541879 PRJEB31933 2020-11-25
104 European hop (primary hap 2023)[IGV] Humulus lupulus GCF_963169125.1_drHumLupu1.1 SAMEA7522047 PRJEB64913 2023-08-19
105 European hop (Shinshu Wase 2014)[IGV] Humulus lupulus var. lupulus GCA_000831365.1_hl_SW_version_1.0.fasta SAMD00021060 PRJDB3233 2014-12-22
106 European mistletoe (primary hap 2023)[IGV] Viscum album GCA_963277665.1_drVisAlbu1.1 SAMEA7522516 PRJEB64804 2023-10-07
107 false flax[IGV] Camelina sativa GCF_000633955.1_Cs SAMN02644653 PRJNA231618 2014-04-24
108 field mustard[IGV] Brassica rapa GCF_000309985.2_CAAS_Brap_v3.01 SAMN02981293 PRJNA59981 2020-01-23
109 finger millet (ML-365 2017)[IGV] Eleusine coracana subsp. coracana GCA_002180455.1_ASM218045v1 SAMN04849255 PRJNA318349 2017-06-08
110 flowering dogwood (Cherokee Brave 2023)[IGV] Cornus florida GCF_030987335.1_ASM3098733v1 SAMN36025967 PRJNA988529 2023-08-30
111 foxtail millet[IGV] Setaria italica GCF_000263155.2_Setaria_italica_v2.0 SAMN02981383 PRJNA32913 2015-10-30
112 garden asparagus (2017)[IGV] Asparagus officinalis GCF_001876935.1_Aspof.V1 SAMN04606231 PRJNA317340 2017-02-06
113 garden lettuce (Salinas v11 2022)[IGV] Lactuca sativa GCF_002870075.4_Lsat_Salinas_v11 SAMN33010172 PRJNA173551 2022-11-23
114 garden pea (Zhongwan6 2022)[IGV] Pisum sativum GCF_024323335.1_CAAS_Psat_ZW6_1.0 SAMN19348527 PRJNA730094 2022-07-19
115 garlic-fruit tree (guangnan 2023)[IGV] Malania oleifera GCF_029873635.1_ASM2987363v1 SAMN09235853 PRJNA472200 2023-05-15
116 ghaf (Desert tree PC_DT_omini 2023)[IGV] Prosopis cineraria GCF_029017545.1_ASM2901754v1 SAMN28406153 PRJNA838117 2023-03-06
117 ginger[IGV] Zingiber officinale GCF_018446385.1_Zo_v1.1 SAMN15647981 PRJNA647255 2021-05-21
118 globe artichoke (v1.1 2C 2018)[IGV] Cynara cardunculus var. scolymus GCF_001531365.2_CcrdV1.1 SAMN03402638 PRJNA238069 2018-04-17
119 goatgrass A.strangulata[IGV] Aegilops tauschii subsp. strangulata GCF_002575655.1_Aet_v4.0 SAMN05426520 PRJNA341983 2017-10-18
120 goatgrass A.tauschii[IGV] Aegilops tauschii subsp. tauschii GCF_001957025.1_Aet_MR_1.0 SAMN05426520 PRJNA329335 2017-01-19
121 goji berry (Lr01 2021)[IGV] Lycium barbarum GCF_019175385.1_ASM1917538v2 SAMN15311679 PRJNA640228 2021-07-08
122 golden kiwifruit (Hongyang 2019)[IGV] Actinidia chinensis GCA_009663005.1_ASM966300v1 SAMN12097858 PRJNA549770 2019-11-14
123 golden kiwifruit (Red5 2018)[IGV] Actinidia chinensis var. chinensis GCA_003024255.1_Red5_PS1_1.69.0 SAMN07269859 PRJNA391506 2018-03-30
124 great duckweed (9509 2017)[IGV] Spirodela polyrhiza GCA_001981405.1_ASM198140v1 SAMN04386762 PRJNA308109 2017-01-17
125 green algae (CCMP1545 2009)[IGV] Micromonas pusilla CCMP1545 GCF_000151265.4_Micromonas_pusilla_CCMP1545_v2.0 SAMN02953743 PRJNA15678 2009-04-09
126 green algae (LANL1001 2019)[IGV] Tetraselmis striata GCA_006384855.1_TSEL_PacBio_SMRT SAMN11613237 PRJNA542153 2019-06-21
127 green algae (YS-2018 2019)[IGV] Ulva prolifera GCA_004138255.1_ASM413825v1 SAMN09766007 PRJNA484545 2019-02-05
128 green algae A.protothecoides (0710 2014)[IGV] Auxenochlorella protothecoides GCF_000733215.1_ASM73321v1 SAMN02433493 PRJNA182710 2014-08-01
129 green algae B.prasinos (RCC1105 2012)[IGV] Bathycoccus prasinos GCF_002220235.1_ASM222023v1 n/a PRJEA71363 2012-11-22
130 green algae C.reinhardtii (CC-5816 2022)[IGV] Chlamydomonas reinhardtii GCA_026108075.1_ASM2610807v1 SAMN28571528 PRJNA840945 2022-11-09
131 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 refseq)[IGV] Chlamydomonas reinhardtii GCF_000002595.2_Chlamydomonas_reinhardtii_v5.5 SAMN02953692 PRJNA12260 2018-01-26
132 green algae C.subellipsoidea (C-169 2012)[IGV] Coccomyxa subellipsoidea C-169 GCF_000258705.1_Coccomyxa_subellipsoidae_v2.0 SAMN02744078 PRJNA32657 2012-04-13
133 green algae C.variabilis (NC64A 2010 refseq)[IGV] Chlorella variabilis GCF_000147415.1_v_1.0 SAMN02744065 PRJNA45853 2010-09-16
134 green algae K.nitens (NIES-2285 2014)[IGV] Klebsormidium nitens GCA_000708835.1_ASM70883v1 SAMD00000399 PRJDB718 2014-06-03
135 green algae M.commoda (RCC299 2009)[IGV] Micromonas commoda GCF_000090985.2_ASM9098v2 SAMN03081421 PRJNA15676 2009-04-10
136 green algae M.neglectum (SAG 48.87 2015)[IGV] Monoraphidium neglectum GCF_000611645.1_mono_v1 SAMN02981574 PRJNA221625 2015-02-26
137 green algae M.pusilla (CCMP1545 2009)[IGV] Micromonas pusilla CCMP1545 GCF_000151265.2_Micromonas_pusilla_CCMP1545_v2.0 SAMN02953743 PRJNA15678 2009-04-09
138 green algae O.lucimarinus (CCE9901 2007)[IGV] Ostreococcus lucimarinus CCE9901 GCF_000092065.1_ASM9206v1 SAMN03081420 PRJNA13044 2007-04-10
139 green algae O.tauri (RCC4221 2014)[IGV] Ostreococcus tauri GCF_000214015.3_version_140606 SAMEA3138397 PRJNA12912 2014-10-02
140 green algae V.carteri (Eve 2010)[IGV] Volvox carteri f. nagariensis GCF_000143455.1_v1.0 SAMN02953753 PRJNA13109 2010-07-08
141 green chiretta (2019)[IGV] Andrographis paniculata GCF_009805555.1_ASM980555v1 SAMN12076765 PRJNA549104 2019-12-27
142 green foxtail[IGV] Setaria viridis GCF_005286985.1_Setaria_viridis_v2.0 SAMN05660902 PRJNA265547 2019-05-14
143 green foxtail (ME034v 2020)[IGV] Setaria viridis GCA_012934335.1_ASM1293433v1 SAMN12637416 PRJNA560942 2020-04-30
144 Guinea yam (TDr96_F1 2017)[IGV] Dioscorea cayenensis subsp. rotundata GCA_002240015.2_TDr96_F1_Pseudo_Chromosome_v1.0 SAMD00039982 PRJDB3383 2017-07-28
145 habanero-type pepper (PI159236 2017)[IGV] Capsicum chinense GCA_002271895.2_ASM227189v2 SAMN05435899 PRJNA331024 2017-10-30
146 hairy vetch (HV-30 2023)[IGV] Vicia villosa GCF_029867415.1_Vvil1.0 SAMN30222902 PRJNA868110 2023-04-26
147 Hall's panicgrass[IGV] Panicum hallii GCF_002211085.1_PHallii_v3.1 SAMN03003198 PRJNA250527 2018-05-01
148 Himalayan balsam (dImpGla2.1 2021)[IGV] Impatiens glandulifera GCF_907164915.1_dImpGla2.1 SAMEA5248722 PRJEB44449 2021-05-17
149 horseweed[IGV] Erigeron canadensis GCF_010389155.1_C_canadensis_v1 SAMN13170886 PRJNA586872 2020-03-09
150 Indian licorice[IGV] Abrus precatorius GCF_003935025.1_Abrus_2018 SAMN10039699 PRJNA482671 2018-12-11
151 interior live oak (QUWIS_CCGP_1 alternate hap 2022)[IGV] Quercus wislizeni GCA_023055485.1_dhQueWisl1.0.a SAMN26368104 PRJNA819167 2022-04-19
152 interior live oak (QUWIS_CCGP_1 primary hap 2022)[IGV] Quercus wislizeni GCA_023055345.1_dhQueWisl1.0.p SAMN26368104 PRJNA819168 2022-04-19
153 island oak (RSA801373 alternate hap 2023)[IGV] Quercus tomentella GCA_028535165.1_dhQueTome1.0.hap2 SAMN29046697 PRJNA887122 2023-02-07
154 island oak (RSA801373 primary hap 2023)[IGV] Quercus tomentella GCA_028535515.1_dhQueTome1.0.hap1 SAMN29046697 PRJNA887123 2023-02-07
155 J.microcarpa x regia eudicots (UCDavis 2019)[IGV] Juglans microcarpa x Juglans regia GCF_004785595.1_Jm3101_v1.0 SAMN09474938 PRJNA529253 2019-04-16
156 Japanese apricot[IGV] Prunus mume GCF_000346735.1_P.mume_V1.0 SAMN02981503 PRJNA171605 2014-02-28
157 Japanese cedar (2023)[IGV] Cryptomeria japonica GCF_030272615.1_Sugi_1.0 SAMD00508672 PRJDB13806 2023-03-31
158 Japanese morning glory[IGV] Ipomoea nil GCF_001879475.1_Asagao_1.1 SAMD00022859 PRJDB4356 2016-09-01
159 Japanese rice[IGV] Oryza sativa Japonica Group GCF_001433935.1_IRGSP-1.0 SAMD00000397 PRJDB1747 2015-10-10
160 Japanese rice (Kitaake 2020)[IGV] Oryza sativa Japonica Group GCA_009797565.1_Osativa_Kitaake_v2.0 SAMN08824567 PRJNA448171 2020-02-25
161 Joseph's coat eudicots (Red AtriRed21 2022)[IGV] Amaranthus tricolor GCF_026212465.1_ASM2621246v1 SAMN31325361 PRJNA891371 2022-11-18
162 Korean lawngrass (Nagirizaki 2016)[IGV] Zoysia japonica GCA_001602275.1_ASM160227v1 SAMD00041943 PRJDB4210 2016-03-15
163 lettuce eudicots (Salinas 2011)[IGV] Lactuca sativa GCA_000227445.1_Legassy_V2 SAMN00727718 PRJNA68025 2011-10-04
164 lyrate rockcress[IGV] Arabidopsis lyrata subsp. lyrata GCF_000004255.2_v.1.0 SAMN02981250 PRJNA41137 2016-11-26
165 macadamia nut[IGV] Macadamia integrifolia GCF_013358625.1_SCU_Mint_v3 SAMN13508564 PRJNA593881 2020-06-23
166 Madagascar periwinkle (Sunstorm Apricot 2015)[IGV] Catharanthus roseus GCA_000949345.1_ASM94934v1 SAMN02989763 PRJNA252611 2015-03-06
167 Magnolia sinica (HGM2019 2023)[IGV] Magnolia sinica GCF_029962835.1_MsV1 SAMN33820282 PRJNA774088 2023-05-12
168 maize[IGV] Zea mays GCF_902167145.1_Zm-B73-REFERENCE-NAM-5.0 SAMEA5569141 PRJEB32225 2020-03-21
169 maize (2020)[IGV] Zea mays GCA_905067065.1_Zm-LH244-REFERENCE-BAYER-1.0 SAMEA7456473 PRJEB40019 2020-11-01
170 maize (B104 2021)[IGV] Zea mays GCA_910593975.1_Zm-B104-REFERENCE-CORTEVA-1.0 SAMEA8718246 PRJEB44462 2021-11-30
171 maize (OH43 2020)[IGV] Zea mays GCA_902167015.1_Zm-Oh43-REFERENCE-NAM-1.0 SAMEA5313318 PRJEB31061 2020-03-21
172 malo sina (v2 2021)[IGV] Oryza brachyantha GCF_000231095.2_ObraRS2 SAMN02981362 PRJNA70533 2021-03-10
173 mango[IGV] Mangifera indica GCF_011075055.1_CATAS_Mindica_2.1 SAMN09899728 PRJNA487154 2020-03-10
174 monocots[IGV] Aegilops tauschii subsp. strangulata GCF_002575655.2_Aet_v5.0 SAMN05426520 PRJNA341983 2021-09-30
175 mosses[IGV] Physcomitrium patens GCF_000002425.4_Phypa_V3 SAMN00120126 PRJNA13064 2018-01-24
176 mulberry M.notabilis[IGV] Morus notabilis GCF_000414095.1_ASM41409v2 SAMN02141246 PRJNA202089 2013-08-07
177 mung bean (VC1973A 2015 refseq)[IGV] Vigna radiata var. radiata GCF_000741045.1_Vradiata_ver6 SAMN02720863 PRJNA243847 2015-10-28
178 muskmelon (AY 2022)[IGV] Cucumis melo GCF_025177605.1_USDA_Cmelo_AY_1.0 SAMN29843731 PRJNA844271 2022-09-14
179 muskmelon (DHL92 2012)[IGV] Cucumis melo GCF_000313045.1_ASM31304v1 SAMEA2272451 PRJEB68 2012-10-05
180 narrow-leaved blue lupine[IGV] Lupinus angustifolius GCF_001865875.1_LupAngTanjil_v1.0 SAMN04215042 PRJNA299755 2016-11-16
181 New South Wales waratah (Mountain lineage 2021)[IGV] Telopea speciosissima GCF_018873765.1_Tspe_v1 SAMN18238110 PRJNA712988 2021-06-14
182 opium poppy[IGV] Papaver somniferum GCF_003573695.1_ASM357369v1 SAMN08604995 PRJNA435796 2018-09-18
183 orchid D.catenatum[IGV] Dendrobium catenatum GCF_001605985.2_ASM160598v2 SAMN03083363 PRJNA262478 2017-12-12
184 orchid P.equestris[IGV] Phalaenopsis equestris GCF_001263595.1_ASM126359v1 SAMN02046388 PRJNA192198 2015-08-07
185 papaya[IGV] Carica papaya GCF_000150535.2_Papaya1.0 SAMN02953710 PRJNA20267 2008-05-06
186 patchouli (Gaoche1L2016 2018)[IGV] Pogostemon cablin GCA_003675935.1_DSBC_Pcab_1.0 SAMN09222897 PRJNA471952 2018-10-23
187 peach[IGV] Prunus persica GCF_000346465.2_Prunus_persica_NCBIv2 SAMN02981429 PRJNA31227 2017-02-02
188 peanut[IGV] Arachis hypogaea GCF_003086295.2_arahy.Tifrunner.gnm1.KYV3 SAMN08051159 PRJNA419393 2018-05-30
189 peanut (GDAAS-fuhuasheng2018 2019)[IGV] Arachis hypogaea GCA_004170445.1_ASM417044v1 SAMN10345426 PRJNA500997 2019-02-12
190 pearl millet (Tift 23D2B1-P1-P5 2018)[IGV] Cenchrus americanus GCA_002174835.2_ASM217483v2 SAMN04124419 PRJNA294988 2018-01-24
191 pecan[IGV] Carya illinoinensis GCF_018687715.1_C.illinoinensisPawnee_v1 SAMN16882287 PRJNA680556 2021-06-03
192 perennial ryegrass (Kyuss_39 2021)[IGV] Lolium perenne GCF_019359855.1_MPB_Lper_Kyuss_1697 SAMN17257337 PRJNA690687 2021-07-28
193 Peruvian cotton (G.raimondii 2012 DOE)[IGV] Gossypium raimondii GCF_000327365.2_Graimondii2_0v2 SAMN02743920 PRJNA171262 2012-12-20
194 Peruvian cotton (GPD5lz 2022)[IGV] Gossypium raimondii GCF_025698545.1_ASM2569854v1 SAMN30903775 PRJNA788082 2022-10-17
195 Phtheirospermum japonicum (okayama 2020)[IGV] Phtheirospermum japonicum GCA_014905375.1_Pjver1 SAMD00029051 PRJDB3858 2020-10-01
196 pigeon pea (v2 2016 BGI)[IGV] Cajanus cajan GCF_000340665.2_C.cajan_V1.1 SAMN02981370 PRJNA72815 2016-09-29
197 pineapple[IGV] Ananas comosus GCF_001540865.1_ASM154086v1 SAMN04316497 PRJNA305080 2016-03-14
198 pink shepherd's-purse[IGV] Capsella rubella GCF_000375325.1_Caprub1_0 SAMN02981483 PRJNA13878 2013-04-23
199 pistachio[IGV] Pistacia vera GCF_008641045.1_PisVer_v2 SAMN11269074 PRJNA526975 2019-09-23
200 pocket water lily (Beijing-Zhang1983 2022)[IGV] Nymphaea colorata GCF_008831285.2_ASM883128v2 SAMN12766378 PRJNA565347 2022-08-01
201 pomegranate[IGV] Punica granatum GCF_007655135.1_ASM765513v2 SAMN05193489 PRJNA324150 2019-10-22
202 potato S.stenotomum (F172 2021)[IGV] Solanum stenotomum GCF_019186545.1_ASM1918654v1 SAMN14480720 PRJNA616063 2021-07-09
203 potato S.tuberosum (alt pseudohaplotype RH89-039-16 2020)[IGV] Solanum tuberosum GCA_014189305.1_ASM1418930v1 SAMN12826500 PRJNA646008 2020-08-14
204 potato S.tuberosum (Dihaploid 'C-13' 2020)[IGV] Solanum tuberosum GCA_010127505.1_ASM1012750v1 SAMN08689152 PRJNA438035 2020-02-04
205 potato S.tuberosum (DM 1-3 516 R44 2011)[IGV] Solanum tuberosum GCF_000226075.1_SolTub_3.0 SAMN02981305 PRJNA63145 2011-09-19
206 potato S.tuberosum (hap 1 of 4 Otava Stieglitz 2021)[IGV] Solanum tuberosum GCA_020169555.1_solTubStieglitzHap1 SAMN20326207 PRJNA748001 2021-09-28
207 potato S.tuberosum (hap 2 of 4 Otava Stieglitz 2021)[IGV] Solanum tuberosum GCA_020169535.1_solTubStieglitzHap2 SAMN20326207 PRJNA748002 2021-09-28
208 potato S.tuberosum (hap 3 of 4 Otava Hera 2021)[IGV] Solanum tuberosum GCA_020169585.1_solTubHeraHap1 SAMN20326207 PRJNA747997 2021-09-28
209 potato S.tuberosum (hap 4 of 4 Otava Hera 2021)[IGV] Solanum tuberosum GCA_020169575.1_solTubHeraHap2 SAMN20326207 PRJNA747998 2021-09-28
210 potato S.tuberosum (RH89-039-16 2020)[IGV] Solanum tuberosum GCA_014189475.1_ASM1418947v1 SAMN12826500 PRJNA573826 2020-08-14
211 potato S.verrucosum (2019)[IGV] Solanum verrucosum GCF_900185275.1_falcon-dt-bn SAMEA104077226 PRJEB21129 2019-03-13
212 quinoa[IGV] Chenopodium quinoa GCF_001683475.1_ASM168347v1 SAMN04338310 PRJNA306026 2017-05-19
213 radish (v2 WK10039 2023)[IGV] Raphanus sativus GCF_000801105.2_ASM80110v3 SAMN03084390 PRJNA239785 2023-02-09
214 rape (Da-Ae 2021)[IGV] Brassica napus GCF_020379485.1_Da-Ae SAMN14670173 PRJNA627442 2021-10-08
215 rape (ZS11 2017)[IGV] Brassica napus GCF_000686985.2_Bra_napus_v2.0 SAMN02742820 PRJNA237736 2017-09-15
216 red clover eudicots (HEN17-A07 2021)[IGV] Trifolium pratense GCF_020283565.1_ARS_RC_1.1 SAMN20750279 PRJNA754186 2021-10-13
217 red sage (Shanhuang shh 2023)[IGV] Salvia miltiorrhiza GCF_028751815.1_IMPLAD_Smil_shh SAMN31793759 PRJNA903271 2023-02-24
218 red wild einkorn wheat (G1812 2018)[IGV] Triticum urartu GCF_003073215.2_Tu2.1 SAMN05513572 PRJNA337888 2018-04-30
219 Rhododendron vialii eudicots (Sample 1 2023)[IGV] Rhododendron vialii GCF_030253575.1_ASM3025357v1 SAMN35028934 PRJNA971246 2023-06-12
220 rice bean eudicots (VRB-3 Himshakti 2021)[IGV] Vigna umbellata GCF_018835915.1_ASM1883591v1 SAMN11230903 PRJNA432818 2021-06-10
221 riverbank grape[IGV] Vitis riparia GCF_004353265.1_EGFV_Vit.rip_1.0 SAMN10662253 PRJNA512170 2019-04-16
222 rose gum (2021)[IGV] Eucalyptus grandis GCF_016545825.1_ASM1654582v1 SAMN13016251 PRJNA509734 2021-01-06
223 rose gum (BRASUZ1 2014)[IGV] Eucalyptus grandis GCF_000612305.1_Egrandis1_0 SAMN02230419 PRJNA49047 2014-05-02
224 rose of Sharon[IGV] Hibiscus syriacus GCF_006381635.1_ASM638163v2 SAMN11494363 PRJNA535386 2019-11-18
225 rubber tree (MT/VB/25A 57/8 2023)[IGV] Hevea brasiliensis GCF_030052815.1_ASM3005281v1 SAMN33788361 PRJNA945562 2023-05-22
226 rubber tree (reyan7-33-97 2016)[IGV] Hevea brasiliensis GCF_001654055.1_ASM165405v1 SAMN04451765 PRJNA310386 2016-06-01
227 S.splendens huo1 eudicots (BFU 2021)[IGV] Salvia splendens GCF_004379255.1_SspV2 SAMN08162997 PRJNA422035 2021-05-20
228 sacred lotus[IGV] Nelumbo nucifera GCF_000365185.1_Chinese_Lotus_1.1 SAMN02054413 PRJNA168000 2013-08-08
229 saltwater cress[IGV] Eutrema salsugineum GCF_000478725.1_Eutsalg1_0 SAMN02981485 PRJNA73205 2013-11-05
230 sandblossoms (Phelan CA IGA184 alternate hap 2022)[IGV] Linanthus parryae GCA_023055565.1_ddLinParr1.0.a SAMN26264369 PRJNA819153 2022-04-19
231 sandblossoms (Phelan CA IGA184 primary hap 2022)[IGV] Linanthus parryae GCA_023055425.1_ddLinParr1.0.p SAMN26264369 PRJNA819154 2022-04-19
232 scarlet sage (huo1 2021)[IGV] Salvia splendens GCF_004379255.2_SspV2 SAMN08162997 PRJNA422035 2021-05-20
233 scented satinash[IGV] Syzygium oleosum GCF_900635055.1_Sole10x-PRISCAF SAMEA5186524 PRJEB30445 2019-02-07
234 sesame[IGV] Sesamum indicum GCF_000512975.1_S_indicum_v1.0 SAMN02981519 PRJNA186669 2014-01-06
235 shrubby jointvetch A. evenia (CIAT22838 2020)[IGV] Aeschynomene evenia GCA_013621005.1_IRD_Aeve_1.1 SAMN08866577 PRJNA448804 2020-07-29
236 silver malletwood (14919 2019)[IGV] Rhodamnia argentea GCF_900635035.1_Rarg10x-PRISCAF SAMEA5186523 PRJEB30444 2019-02-07
237 silver malletwood (NSW1041297 2021)[IGV] Rhodamnia argentea GCF_020921035.1_ASM2092103v1 SAMN19698777 PRJNA737568 2021-11-22
238 silver poplar[IGV] Populus alba GCF_005239225.1_ASM523922v1 SAMN10068022 PRJNA491245 2019-05-08
239 silverweed cinquefoil (primary hap 2022)[IGV] Argentina anserina GCF_933775445.1_drPotAnse1.1 SAMEA7522052 PRJEB51709 2022-03-28
240 sorghum (BTx623 2017)[IGV] Sorghum bicolor GCF_000003195.3_Sorghum_bicolor_NCBIv3 SAMN02953738 PRJNA13876 2017-04-07
241 sorghum (Tx430 2018)[IGV] Sorghum bicolor GCA_003482435.1_Corteva_Sorghum_ONT_TX430_1.0 SAMN09228096 PRJNA472170 2018-09-06
242 soybean (US DOE JGI-PGF v2 2021)[IGV] Glycine max GCF_000004515.6_Glycine_max_v4.0 SAMN00002965 PRJNA19861 2021-03-10
243 spider flower[IGV] Tarenaya hassleriana GCF_000463585.1_ASM46358v1 SAMN02981509 PRJNA175230 2013-09-05
244 spinach (Sp75 2017)[IGV] Spinacia oleracea GCF_002007265.1_ASM200726v1 SAMN05242642 PRJNA325593 2017-02-27
245 spinach (Varoflay 2021)[IGV] Spinacia oleracea GCF_020520425.1_BTI_SOV_V1 SAMN13714978 PRJNA598728 2021-10-20
246 spotted monkey flower[IGV] Erythranthe guttata GCF_000504015.1_Mimgu1_0 SAMN02742818 PRJNA13880 2014-04-02
247 stiff brome[IGV] Brachypodium distachyon GCF_000005505.3_Brachypodium_distachyon_v3.0 SAMN02981254 PRJNA32607 2018-01-24
248 strawberry (Reikou 2013)[IGV] Fragaria x ananassa GCA_000511835.1_FAN_r1.1 n/a PRJDB1477 2013-12-06
249 sugarcane (2018)[IGV] Saccharum hybrid cultivar GCA_900465005.1_MTP SAMEA4681430 PRJEB26915 2018-07-01
250 sweet cherry[IGV] Prunus avium GCF_002207925.1_PAV_r1.0 SAMD00052827 PRJDB4877 2017-06-12
251 sweet orange[IGV] Citrus sinensis GCF_000317415.1_Csi_valencia_1.0 SAMN02981414 PRJNA86123 2012-12-12
252 sweet potato (Taizhong6 2017)[IGV] Ipomoea batatas GCA_002525835.2_ipoBat4 SAMN04254013 PRJNA301667 2017-10-16
253 sweet wormwood (Huhao1# 2018)[IGV] Artemisia annua GCA_003112345.1_ASM311234v1 SAMN08125514 PRJNA416223 2018-05-08
254 switchgrass[IGV] Panicum virgatum GCF_016808335.1_P.virgatum_v5 SAMN00760928 PRJNA40657 2021-02-10
255 Tartarian buckwheat (Pinku1 2017)[IGV] Fagopyrum tataricum GCA_002319775.1_Ft1.0 SAMN06686189 PRJNA381676 2017-09-21
256 thale cress (tair10.1 Columbia 2018)[IGV] Arabidopsis thaliana GCF_000001735.4_TAIR10.1 SAMN03081427 PRJNA10719 2018-03-15
257 thunder duke vine[IGV] Tripterygium wilfordii GCF_013401445.1_ASM1340144v1 SAMN11634134 PRJNA542587 2020-07-13
258 tobacco N.attenuata[IGV] Nicotiana attenuata GCF_001879085.1_NIATTr2 SAMN04590212 PRJNA316810 2016-11-15
259 tobacco N.tomentosiformis[IGV] Nicotiana tomentosiformis GCF_000390325.2_Ntom_v01 SAMN02981530 PRJNA182501 2013-05-16
260 tomato (v3.1 Heinz 1706 2018)[IGV] Solanum lycopersicum GCF_000188115.5_SL3.1 SAMN02981290 PRJNA119 2018-04-18
261 toyon (HeAr 88 alternate hap 2022)[IGV] Heteromeles arbutifolia GCA_024363235.1_drHetArbu1.0.a SAMN29046707 PRJNA851486 2022-07-21
262 toyon (HeAr 88 primary hap 2022)[IGV] Heteromeles arbutifolia GCA_024362995.1_drHetArbu1.0.p SAMN29046707 PRJNA851487 2022-07-21
263 tree cotton (Shixiya-1 2022)[IGV] Gossypium arboreum GCF_025698485.1_ASM2569848v2 SAMN30903772 PRJNA788082 2022-10-17
264 tree cotton (Shixiya1 2015 BGI)[IGV] Gossypium arboreum GCF_000612285.1_Gossypium_arboreum_v1.0 SAMN02981570 PRJNA203683 2015-09-28
265 trilobed morning glory[IGV] Ipomoea triloba GCF_003576645.1_ASM357664v1 SAMN08285276 PRJNA428241 2018-09-19
266 Valencia sweet orange 2022[IGV] Citrus sinensis GCF_022201045.2_DVS_A1.0 SAMN19611724 PRJNA736174 2022-02-11
267 valley oak (v3.2 2019)[IGV] Quercus lobata GCF_001633185.2_ValleyOak3.2 SAMN10584531 PRJNA308314 2019-01-11
268 Van Houtte's columbine (alt pseudohaplotype PFEx6 2022)[IGV] Aquilegia eximia GCA_023053535.1_dmAquExim1.0.a SAMN25872407 PRJNA810485 2022-04-19
269 Van Houtte's columbine (PFEx6 2022)[IGV] Aquilegia eximia GCA_023053565.1_dmAquExim1.0.p SAMN25872407 PRJNA810486 2022-04-19
270 vegetable marrow (v2 mu-cu-16 2017)[IGV] Cucurbita pepo subsp. pepo GCF_002806865.2_ASM280686v2 SAMN07125871 PRJNA386743 2017-12-07
271 wax gourd[IGV] Benincasa hispida GCF_009727055.1_ASM972705v1 SAMN08364809 PRJNA430006 2019-12-03
272 weeping love grass (Victoria 2019)[IGV] Eragrostis curvula GCA_007726485.1_CERZOS_EC1.0 SAMN10526598 PRJNA508722 2019-08-05
273 white fonio (2020)[IGV] Digitaria exilis GCA_902806635.1_CM05836_v1.1 SAMEA6542037 PRJEB36539 2020-04-16
274 white lupine (Amiga GWH2020 2020)[IGV] Lupinus albus GCA_010261695.1_La_Amiga3.1 SAMN12501103 PRJNA592024 2020-02-06
275 white yam[IGV] Dioscorea cayenensis subsp. rotundata GCF_009730915.1_TDr96_F1_v2_PseudoChromosome.rev07_lg8_w22_25.fasta SAMD00039982 PRJDB8681 2019-11-25
276 wild cabbage[IGV] Brassica oleracea var. oleracea GCF_000695525.1_BOL SAMN02584321 PRJNA217459 2014-05-27
277 wild cabbage (2018)[IGV] Brassica oleracea GCA_900416815.2_Brassica_oleracea_HDEM SAMEA4646675 PRJEB26621 2018-07-11
278 wild Colombian cocoa[IGV] Herrania umbratica GCF_002168275.1_ASM216827v2 SAMN06806157 PRJNA383741 2017-06-05
279 wild emmer wheat (Zavitan Atlit2015 v2.1 2019)[IGV] Triticum dicoccoides GCF_002162155.2_WEW_v2.1 SAMN04448013 PRJNA310175 2019-02-04
280 wild Malaysian banana[IGV] Musa acuminata subsp. malaccensis GCF_000313855.2_ASM31385v2 SAMEA2272344 PRJEA82777 2012-11-14
281 wild olive[IGV] Olea europaea var. sylvestris GCF_002742605.1_O_europaea_v1 SAMN05943011 PRJNA350614 2017-11-03
282 wild peanut A.duranensis (v2 V14167 2020)[IGV] Arachis duranensis GCF_000817695.3_aradu.V14167.gnm2.J7QH SAMN02982871 PRJNA258023 2020-09-21
283 wild peanut A.ipaensis (K30076 2017)[IGV] Arachis ipaensis GCF_000816755.2_Araip1.1 SAMN02982874 PRJNA258025 2017-04-25
284 wild peanut A.stenosperma (V10309 2020)[IGV] Arachis stenosperma GCF_014773155.1_arast.V10309.gnm1.PFL2 SAMN14308800 PRJNA610652 2020-10-02
285 wild soybean[IGV] Glycine soja GCF_004193775.1_ASM419377v2 SAMN09862384 PRJNA486704 2019-02-21
286 wild strawberry (2011 refseq)[IGV] Fragaria vesca subsp. vesca GCF_000184155.1_FraVesHawaii_1.0 SAMN00120060 PRJNA60037 2011-02-24
287 wild sugarcane (AP85-441 2018)[IGV] Saccharum spontaneum GCA_003544955.1_Sspon.HiC_chr_asm SAMN09753102 PRJNA483885 2018-09-12
288 wild tomato S.pennellii[IGV] Solanum pennellii GCF_001406875.1_SPENNV200 SAMEA3283146 PRJEB5809 2014-07-11
289 wine grape (Chardonnay FPS 04 2020)[IGV] Vitis vinifera GCA_011037095.1_Chardonnay04 SAMN12130050 PRJNA550461 2020-02-27
290 wine grape (Chkhaveri 2017)[IGV] Vitis vinifera GCA_002922885.1_Chkhaveri_assembly01 SAMD00080537 PRJDB5761 2017-06-14
291 wine grape (Pinot Noir 40024 2023)[IGV] Vitis vinifera GCF_030704535.1_ASM3070453v1 SAMN30929529 PRJNA882193 2023-08-09
292 wine grape (PN40024 2009)[IGV] Vitis vinifera GCF_000003745.3_12X SAMEA2272750 PRJEA18785 2009-12-07
293 winter cress (G-type 2016)[IGV] Barbarea vulgaris GCA_001920985.1_ASM192098v1 SAMN04979170 PRJNA321292 2016-12-23
294 winter squash[IGV] Cucurbita maxima GCF_002738345.1_Cmax_1.0 SAMN06886671 PRJNA385310 2017-10-31
295 wood tobacco[IGV] Nicotiana sylvestris GCF_000393655.1_Nsyl SAMN02981529 PRJNA182500 2013-05-16
296 zha cai (T84-66 inbred line 2016)[IGV] Brassica juncea var. tumida GCA_001687265.1_Brassica_juncea_var_tumida_T84-66_v1 SAMN03741772 PRJNA285130 2016-09-23

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 214 assemblies assembly stats track stats
Mammals 527 assemblies assembly stats track stats
Birds 348 assemblies assembly stats track stats
Fishes 382 assemblies assembly stats track stats
other vertebrates 215 assemblies assembly stats track stats
Invertebrates 697 assemblies assembly stats track stats
Plants 296 assemblies assembly stats track stats
Fungi 648 assemblies assembly stats track stats
Viruses 281 assemblies assembly stats track stats
Bacteria 96 assemblies assembly stats track stats
legacy/superseded 441 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 798 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats