Legacy Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
clade
1 aardvark (BS58 2019 Broad) Orycteropus afer GCA_004365145.1_OryAfe_v1_BIUU SAMN07678101 PRJNA399461 2019-03-22 mammals
2 African clawed frog (2016) Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 SAMN04518361 PRJNA313213 2016-08-09 vertebrate
3 African grass rat (paternal X 2020) Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27 mammals
4 African savanna elephant (2009 genbank) Loxodonta africana GCA_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15 mammals
5 alkali bee (v1.2 Touchet_males 2018) Nomia melanderi GCF_003710045.1_USU_Nmel_1.2 SAMN10185933 PRJNA494873 2018-11-02 invertebrate
6 alpaca (2015 BGI) Vicugna pacos huacaya GCA_000767525.1_Vi_pacos_V1.0 SAMN02996813 PRJNA233565 2015-02-11 mammals
7 alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U) Vicugna pacos GCF_000164845.3_VicPac3.1 SAMN01096418 PRJNA544883 2019-07-15 mammals
8 Alpine marmot (2015) Marmota marmota marmota GCF_001458135.1_marMar2.1 SAMEA3214822 PRJEB8272 2015-11-20 mammals
9 American beaver (US014 2019 Broad) Castor canadensis GCA_004027675.1_CasCan_v1_BIUU SAMN07678136 PRJNA399431 2019-01-16 mammals
10 American bison (2014 genbank) Bison bison bison GCA_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08 mammals
11 American pika 3.0 (2012 Broad genbank) Ochotona princeps GCA_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27 mammals
12 amphipods H.azteca (HAZT.00-mixed v2.0 2016) Hyalella azteca GCF_000764305.1_Hazt_2.0 SAMN02978968 PRJNA243935 2016-07-20 invertebrate
13 Amur tiger (TaeGuk 2013 genbank) Panthera tigris altaica GCA_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06 mammals
14 Anna's hummingbird (BGI_N300 2019 genbank) Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16 birds
15 ant C.costatus (v1 MS0001 2016) Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 SAMN03982885 PRJNA292630 2016-03-25 invertebrate
16 ant N.fulva (TAMU-Nful-2015 v1.0 2019) Nylanderia fulva GCF_005281655.1_TAMU_Nfulva_1.0 SAMN10848236 PRJNA517949 2019-05-13 invertebrate
17 ant T.cornetzi (Tcor2-1 v1.0 2016 BGI) Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 SAMN03982882 PRJNA292627 2016-03-25 invertebrate
18 apple (Golden Delicious X9273 #13 2017 genbank) Malus domestica GCA_002114115.1_ASM211411v1 SAMN05603590 PRJNA339703 2017-05-03 plants
19 Arabian camel (2014 genbank) Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 SAMN03000646 PRJNA234474 2014-10-21 mammals
20 Arctic fox (US066 2019 Broad) Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU SAMN07678118 PRJNA399424 2019-01-15 mammals
21 ascomycetes A.fischeri (v3 NRRL 181 2006) Aspergillus fischeri NRRL 181 GCF_000149645.2_ASM14964v3 SAMN02953637 PRJNA15672 2006-12-14 fungi
22 ascomycetes B.dermatitidis (ER-3 2009 genbank) Blastomyces dermatitidis ER-3 GCA_000003525.2_BD_ER3_V1 SAMN02953741 PRJNA29171 2009-02-24 fungi
23 ascomycetes S.macrospora (v2 k-hell 2012) Sordaria macrospora k-hell GCF_000182805.2_ASM18280v2 SAMEA3138314 PRJNA39253 2012-03-13 fungi
24 ascomycetes S.schenckii (1099-18 2015 genbank) Sporothrix schenckii 1099-18 GCA_000961545.1_S_schenckii_v1 SAMN03199974 PRJNA218070 2015-03-24 fungi
25 ass (Maral har 2015 genbank) Equus asinus GCA_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02 mammals
26 Atlantic halibut (2019 genbank) Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31 fish
27 Atlantic herring (v1) Clupea harengus GCF_900700415.1_Ch_v2.0.2 SAMEA5339254 PRJEB31270 2019-04-16 fish
28 Atlantic salmon (genbank 2021) Salmo salar GCA_905237065.2_Ssal_v3.1 SAMEA8062739 PRJEB43080 2021-04-21 fish
29 B.malayi (v3 2008 agent of lymphatic filariasis) Brugia malayi GCF_000002995.3_ASM299v2 SAMN02953652 PRJNA10729 2008-03-04 invertebrate
30 Bactrian camel (Alxa 2014 genbank) Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23 mammals
31 barn owl BGI_N341 (2014) Tyto alba GCF_000687205.1_ASM68720v1 SAMN02339894 PRJNA212909 2014-05-08 birds
32 barn owl (2020) Tyto alba alba GCF_902150015.1_genome_assembly_l500 SAMEA5733888 PRJEB33158 2020-02-10 birds
33 barn swallow (bHirRus1 v2 primary hap genbank 2021) Hirundo rustica GCA_015227805.2_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02 birds
34 barn swallow (bHirRus1 v2 primary hap refseq 2021) Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02 birds
35 Barn swallow (bHirRus1 v3 primary hap 2021 genbank) Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 SAMN14675488 PRJNA636192 2021-11-30 birds
36 basidiomycetes A.bisporus (H97 2012) Agaricus bisporus var. bisporus H97 GCF_000300575.1_Agabi_varbisH97_2 SAMN02744070 PRJNA61005 2012-11-30 fungi
37 basidiomycetes S.commune (v1 H4-8 2010) Schizophyllum commune H4-8 GCF_000143185.1_v1.0 SAMN02194201 PRJNA32757 2010-07-02 fungi
38 ascomycetes Z.tritici (IPO323 2011 genbank) Zymoseptoria tritici IPO323 GCA_000219625.1_MYCGR_v2.0 SAMN02746078 PRJNA19047 2011-07-06 fungi
39 barramundi perch (ASB-BC8 2016) Lates calcarifer GCF_001640805.1_ASM164080v1 SAMN04026617 PRJNA294489 2016-05-09 fish
40 bee C.calcarata (v1 Rehan_Ccalc_2016 2016) Ceratina calcarata GCF_001652005.1_ASM165200v1 SAMN04252592 PRJNA299559 2016-05-25 invertebrate
41 bee E.mexicana (v1 0111107269 2016) Eufriesea mexicana GCF_001483705.1_ASM148370v1 SAMN03801430 PRJNA279814 2016-05-09 invertebrate
42 beet (2015) Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 SAMN02182557 PRJNA41497 2015-07-07 plants
43 beluga whale (GAN/ISIS: 26980492/103006 v2 2017) Delphinapterus leucas GCA_002288925.2_ASM228892v2 SAMN06216270 PRJNA360851 2017-09-11 mammals
44 black cottonwood (v3 Nisqually-1 2018) Populus trichocarpa GCF_000002775.4_Pop_tri_v3 SAMN02953657 PRJNA10772 2018-01-24 plants
45 black-legged kittiwake (bRisTri1.patW 2023 genbank) Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 SAMN32104255 PRJNA909853 2023-02-09 birds
46 black-legged tick (U.Maryland v1 2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi SAMN16793453 PRJNA678334 2021-02-23 invertebrate
47 black rhinoceros (mBicDic1 primary hap genbank 2021) Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10 mammals
48 black snub-nosed monkey (Rb0 v1 refseq 2016) Rhinopithecus bieti GCF_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
49 black snub-nosed monkey (Rb0 v1 genbank 2016) Rhinopithecus bieti GCA_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
50 black swan (v1 Queensland, Australia AKBS03 2020) Cygnus atratus GCF_013377495.1_Cygnus_atratus_primary_v1.0 SAMN15332785 PRJNA640810 2020-06-30 birds
51 black tiger shrimp (v1 SGIC_2016 2020) Penaeus monodon GCF_015228065.1_NSTDA_Pmon_1 SAMN14330694 PRJNA611030 2020-11-05 invertebrate
52 blue whale (JJ_BM4_2016_0621 v2 2020) Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 SAMN12287136 PRJNA554522 2020-02-03 mammals
53 blunt-snouted clingfish (v1 2019 genbank) Gouania willdenowi GCA_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
54 blunt-snouted clingfish (v1 2019 refseq) Gouania willdenowi GCF_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
55 Bolivian squirrel monkey (3227 Broad 2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 SAMN02981369 PRJNA67945 2011-11-17 primates
56 Bolivian squirrel monkey (100643 v2.0 BCM 2021) Saimiri boliviensis boliviensis GCF_016699345.1_BCM_Sbol_2.0 SAMN16846876 PRJNA679316 2021-01-12 primates
57 brown argus (genbank 2021) Aricia agestis GCA_905147365.1_ilAriAges1.1 SAMEA7523300 PRJEB41901 2021-01-28 invertebrate
58 brown bear (GAN/ISIS:MIG12 v1 2018) Ursus arctos horribilis GCF_003584765.1_ASM358476v1 SAMN09907428 PRJNA487641 2018-09-20 mammals
59 brown bear (v1.0 2022 WashU) Ursus arctos GCF_023065955.1_UrsArc1.0 SAMN25977855 PRJNA807323 2022-04-20 mammals
60 brown dog tick (v1 Rsan-2018 2020) Rhipicephalus sanguineus GCF_013339695.1_ASM1333969v1 SAMN14941062 PRJNA633311 2020-06-16 invertebrate
61 brown headed cowbird (v1.0 BHLD 08-10-18 2020) Molothrus ater GCF_012460135.1_BPBGC_Mater_1.0 SAMN14074414 PRJNA606972 2020-04-20 birds
62 brown planthopper (BPH 2020 genbank) Nilaparvata lugens GCA_014356525.1_ASM1435652v1 SAMN13382557 PRJNA591478 2020-09-09 invertebrate
63 budgerigar (maternal Z 2020 genbank) Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13 birds
64 butterfly L.sinapis (2021 genbank) Leptidea sinapis GCA_905404315.1_ilLepSina1.1 SAMEA7523467 PRJEB43998 2021-04-15 invertebrate
65 butterfly P.napi (v1.1 genbank 2021) Pieris napi GCA_905475465.1_ilPieNapi1.1 SAMEA7523287 PRJEB44052 2021-04-15 invertebrate
66 cabbage white (genbank 2021) Pieris rapae GCA_905147795.1_ilPieRapa1.1 SAMEA7523164 PRJEB41952 2021-01-28 invertebrate
67 California condor (v1 813 2021 genbank) Gymnogyps californianus GCA_018139145.1_ASM1813914v1 SAMN18477433 PRJNA718609 2021-04-25 birds
68 California sea lion (BS06 2019 Broad) Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU SAMN07678053 PRJNA399369 2019-01-15 mammals
69 California sea lion (v1 2019) Zalophus californianus GCA_009762305.1_mZalCal1.pri SAMN12368149 PRJNA559673 2019-12-18 mammals
70 Canada lynx (LIC74 v1 2019) Lynx canadensis GCF_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 2019-07-26 mammals
71 Cape golden mole (BS56 2019 Broad) Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU SAMN07678135 PRJNA399474 2019-01-16 mammals
72 capsicum (Zunla-1 2015 genbank) Capsicum annuum GCA_000710875.1_Pepper_Zunla_1_Ref_v1.0 SAMN01906946 PRJNA186921 2015-03-11 plants
73 carmine bee-eater (2014 BGI) Merops nubicus GCF_000691845.1_ASM69184v1 SAMN02338310 PRJNA212898 2014-05-16 birds
74 cassava (v6 AM560-2 2016 DOE) Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 SAMN04116956 PRJNA234389 2016-06-10 plants
75 cattle (Hereford 2015) Bos taurus GCA_000003205.6_Btau_5.0.1 SAMN02898106 PRJNA12555 2015-11-19 mammals
76 cattle (Hereford L1 Dominette 01449 42190680 v2 2018 USDA) Bos taurus GCF_002263795.1_ARS-UCD1.2 SAMN03145444 PRJNA391427 2018-04-11 mammals
77 Chacoan peccary (BS18 v1 2019 Broad) Catagonus wagneri GCA_004024745.1_CatWag_v1_BIUU SAMN07678067 PRJNA399378 2019-01-15 mammals
78 channel bull blenny (2019 genbank) Cottoperca gobio GCA_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06 fish
79 channel catfish (USDA103 v1 2016) Ictalurus punctatus GCF_001660625.1_IpCoco_1.2 SAMN03486842 PRJNA281269 2016-06-21 fish
80 channel catfish (USDA103 v1.2 2019) Ictalurus punctatus GCF_001660625.2_IpCoco_1.2 SAMN03486842 PRJNA281269 2019-01-25 fish
81 cheetah (AJU 981 2015) Acinonyx jubatus GCA_001443585.1_aciJub1 SAMN04127588 PRJNA297632 2015-11-13 mammals
82 chimney swift (M959 v1.0 2014) Chaetura pelagica GCF_000747805.1_ChaPel_1.0 SAMN03018471 PRJNA210808 2014-09-04 birds
83 chimpanzee genbank Pan troglodytes GCA_002880755.3_Clint_PTRv2 SAMN06272697 PRJNA369439 2018-01-19 primates
84 China rose (Old Blush v1 2018) Rosa chinensis GCF_002994745.1_RchiOBHm-V2 SAMN07737764 PRJNA413292 2018-03-13 plants
85 Chinese hamster (17A/GY CHO 2018) Cricetulus griseus GCF_003668045.1_CriGri-PICR SAMN07140313 PRJNA389969 2018-10-21 mammals
86 Chinook salmon (v2 Ot180627B 2021 male genbank) Oncorhynchus tshawytscha GCA_018296145.1_Otsh_v2.0 SAMN17219827 PRJNA416144 2021-05-07 fish
87 chuck-will's-widow (BGI_N321 v1 2014) Antrostomus carolinensis GCF_000700745.1_ASM70074v1 SAMN02318612 PRJNA212888 2014-06-10 birds
88 climbing perch (v1.1 2018 refseq) Anabas testudineus GCF_900324465.1_fAnaTes1.1 SAMEA104026376 PRJEB25768 2018-03-31 fish
89 climbing perch (v1.2 2018 genbank) Anabas testudineus GCA_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
90 climbing perch (v1.2 2018 refseq) Anabas testudineus GCF_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
91 clouded yellow (genbank 2021) Colias croceus GCA_905220415.1_ilColCroc2.1 SAMEA7523360 PRJEB42878 2021-02-16 invertebrate
92 coho salmon (150728-3 2017) Oncorhynchus kisutch GCF_002021735.1_Okis_V1 SAMN05991263 PRJNA352719 2017-03-06 fish
93 common bottlenose dolphin (maternal Y genbank 2020) Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27 mammals
94 common bottlenose dolphin (MMES2002162SC 2016 genbank) Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28 mammals
95 common brushtail (genbank 2020) Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10 mammals
96 common carp (2014) Cyprinus carpio GCF_000951615.1_common_carp_genome SAMEA2757102 PRJEB7241 2014-11-03 fish
97 common cuckoo (bCucCan1 primary hap 2021 genbank) Cuculus canorus GCA_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15 birds
98 common cuckoo (BGI 2014) Cuculus canorus GCF_000709325.1_ASM70932v1 SAMN02298149 PRJNA212870 2014-06-17 birds
99 common house spider (v2 Geottingen 2017) Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 SAMN02364452 PRJNA167405 2017-04-14 invertebrate
100 common house spider (v3 Goettingen 2019 genbank) Parasteatoda tepidariorum GCA_000365465.3_Ptep_3.0 SAMN02364452 PRJNA167405 2019-06-14 invertebrate
101 common swift (bApuApu2 2021 genbank) Apus apus GCA_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04 birds
102 common vampire bat (v2 DRU21DN04 2018 genbank) Desmodus rotundus GCA_002940915.2_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
103 common vampire bat (v2 DRU21DN04 2018 refseq) Desmodus rotundus GCF_002940915.1_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
104 Coquerel's sifaka 6110/Marcella (2015 genbank) Propithecus coquereli GCA_000956105.1_Pcoq_1.0 SAMN03121823 PRJNA251429 2015-03-23 primates
105 cork oak (v1 HL8 2018) Quercus suber GCF_002906115.1_CorkOak1.0 SAMN07312269 PRJNA392919 2018-01-29 plants
106 cotton bollworm (Harm_GR_Male_#8 2017 genbank) Helicoverpa armigera GCA_002156985.1_Harm_1.0 SAMN06608624 PRJNA378437 2017-05-22 invertebrate
107 cowpea (IT97K-499-35 v1 2019) Vigna unguiculata GCF_004118075.1_ASM411807v1 SAMN06674009 PRJNA381312 2019-01-30 plants
108 crab-eating macaque WashU 2013 genbank Macaca fascicularis GCA_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
109 crab-eating macaque WashU 2013 refseq Macaca fascicularis GCF_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
110 crustacean D.magna (SK Sungkyunkwan U. 2019 genbank) Daphnia magna GCA_003990815.1_ASM399081v1 SAMN10036042 PRJNA490418 2019-01-07 invertebrate
111 degu (3935 2012 genbank) Octodon degus GCA_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01 mammals
112 denticle herring (v1 2019) Denticeps clupeoides GCF_900700375.1_fDenClu1.1 SAMEA104129917 PRJEB31545 2019-03-16 fish
113 dog (BS72 2019 Broad) Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU SAMN07678141 PRJNA399441 2019-01-16 mammals
114 domestic ferret (Sable ID 1420 FGSC 2011) Mustela putorius furo GCF_000215625.1_MusPutFur1.0 SAMN00149631 PRJNA59869 2011-06-02 mammals
115 domestic guinea pig (2N 2008 genbank) Cavia porcellus GCA_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03 mammals
116 domestic silkworm (genbank 2020) Bombyx mori GCA_014905235.2_Bmori_2016v1.0 SAMD00054089 PRJDB4947 2020-10-13 invertebrate
117 domesticated barley (H.vulgare 2021 genbank) Hordeum vulgare subsp. vulgare GCA_904849725.1_MorexV3_pseudomolecules_assembly SAMEA7384724 PRJEB40589 2021-04-01 plants
118 downy woodpecker (BGI 2014) Dryobates pubescens GCF_000699005.1_ASM69900v1 SAMN02314405 PRJNA212874 2014-06-06 birds
119 downy woodpecker (bDryPub1 primary hap 2020) Dryobates pubescens GCA_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02 birds
120 E. coli (K-12 BW25113 2014 genbank) Escherichia coli BW25113 GCA_000750555.1_ASM75055v1 SAMN03013572 PRJNA257976 2014-09-09 bacteria
121 East African water lily (v1 Beijing-Zhang1983 2019) Nymphaea colorata GCF_008831285.1_ASM883128v1 SAMN12766378 PRJNA565347 2019-10-07 plants
122 eastern happy (v2 2018) Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 SAMEA104026430 PRJEB24325 2018-05-30 fish
123 Egyptian rousette (US006 2019 Broad) Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU SAMN07678121 PRJNA399428 2019-01-15 mammals
124 elephant shark (2013) Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 SAMN00000800 PRJNA18361 2013-12-11 vertebrate
125 emu (v1 ZJU1.0 2020) Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 SAMN15183959 PRJNA638233 2020-12-20 birds
126 eudicots lettuce (Salinas v7 2020) Lactuca sativa GCF_002870075.2_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2020-04-13 plants
127 Euphrates poplar (v1 2014) Populus euphratica GCF_000495115.1_PopEup_1.0 SAMN02981499 PRJNA178692 2014-08-12 plants
128 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 SAMEA994740 PRJEB39550 2020-08-06 mammals
129 European peacock (2021 genbank) Nymphalis io GCA_905147045.1_ilAglIoxx1.1 SAMEA7523149 PRJEB41894 2021-01-28 invertebrate
130 European turtle dove (v1.1 alternate hap 2019) Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype SAMEA994735 PRJEB32725 2019-06-02 birds
131 European turtle dove (v1.1 primary hap 2019) Streptopelia turtur GCA_901699155.1_bStrTur1.1 SAMEA994735 PRJEB32724 2019-06-05 birds
132 European woodmouse (2022 genbank) Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28 mammals
133 fall armyworm (Faw-zju 2020 genbank) Spodoptera frugiperda GCA_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
134 fall armyworm (Faw-zju v1.0 refseq 2020) Spodoptera frugiperda GCF_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
135 flier cichlid (MPI-CPG 2019 genbank) Archocentrus centrarchus GCA_007364275.2_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01 fish
136 Florida manatee (Lorelei 2012 genbank) Trichechus manatus latirostris GCA_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23 mammals
137 fly D.albomicans (v1 15112-1751.03 2019) Drosophila albomicans GCF_009650485.1_drosAlbom15112-1751.03v1 SAMN12703415 PRJNA554139 2019-11-14 invertebrate
138 fly D.santomea (v1.0 2021) Drosophila santomea GCF_016746245.1_Prin_Dsan_1.0 SAMN15573959 PRJNA647033 2021-01-25 invertebrate
139 fly D.sechellia (sech25 v1 2019 UC Irvine) Drosophila sechellia GCF_004382195.1_ASM438219v1 SAMN06827992 PRJNA383250 2019-04-16 invertebrate
140 fly D.serrata (v1.0 Fors4 2017) Drosophila serrata GCF_002093755.1_Dser1.0 SAMN06092698 PRJNA355616 2017-04-14 invertebrate
141 fly D.simulans (w501 v3.0 2021) Drosophila simulans GCF_016746395.1_Prin_Dsim_3.0 SAMN06473875 PRJNA377886 2021-01-25 invertebrate
142 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 SAMN02952910 PRJNA12366 2006-06-27 invertebrate
143 fly D.yakuba (v1 2021) Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 SAMN15573791 PRJNA647028 2021-01-25 invertebrate
144 Gaboon caecilian (2019 genbank) Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 vertebrate
145 giant panda (2009 BGI) Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 SAMN00008160 PRJNA38683 2009-12-15 mammals
146 giant panda (Jingjing v1 2017) Ailuropoda melanoleuca GCA_002007445.1_ASM200744v1 SAMN04193337 PRJNA299083 2017-02-28 mammals
147 giant panda (Jingjing v2 refseq 2020) Ailuropoda melanoleuca GCF_002007445.1_ASM200744v2 SAMN04193337 PRJNA588422 2020-04-20 mammals
148 giant panda (Jingjing v2 genbank 2020) Ailuropoda melanoleuca GCA_002007445.2_ASM200744v2 SAMN04193337 PRJNA588422 2020-04-20 mammals
149 gilthead seabream (v1 2019) Sparus aurata GCF_900880675.1_fSpaAur1.1 SAMEA104384835 PRJEB31901 2019-07-30 fish
150 Glanville fritillary (genbank 2021) Melitaea cinxia GCA_905220565.1_ilMelCinx1.1 SAMEA7523475 PRJEB42891 2021-02-16 invertebrate
151 globe artichoke (v1 2C 2018) Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 SAMN03402638 PRJNA238069 2018-04-17 plants
152 goat (v1 San Clemente 2016 USDA genbank) Capra hircus GCA_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
153 goat (v1 San Clemente 2016 USDA refseq) Capra hircus GCF_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
154 golden eagle (v1.2 alternate hap 2019) Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype SAMEA994725 PRJEB33298 2019-07-08 birds
155 golden eagle (v1.2 2019) Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 SAMEA994725 PRJEB27699 2019-07-08 birds
156 golden hamster (Baylor 2013 genbank) Mesocricetus auratus GCA_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29 mammals
157 golden snub-nosed monkey (2014 Novogene) Rhinopithecus roxellana GCA_000769185.1_Rrox_v1 SAMN02427086 PRJNA230020 2014-10-28 primates
158 gray mouse lemur genbank Microcebus murinus GCA_000165445.3_Mmur_3.0 SAMN06275470 PRJNA19967 2017-02-06 primates
159 gray short-tailed opossum (mMonDom1 primary hap 2023 genbank) Monodelphis domestica GCA_027887165.1_mMonDom1.pri SAMN31801966 PRJNA915592 2023-01-18 mammals
160 great roundleaf bat (v1 ML-2016 2016 genbank) Hipposideros armiger GCA_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06 mammals
161 great roundleaf bat (v1 ML-2016 2016 refseq) Hipposideros armiger GCF_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06 mammals
162 greater horseshoe bat (mRhiFer1 2020) Rhinolophus ferrumequinum GCA_014108255.1_mRhiFer1.p SAMN14734547 PRJNA628581 2020-08-13 mammals
163 greater horseshoe bat (v1 MPI-CBG 2019 genbank) Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
164 greater horseshoe bat (v1 MPI-CBG 2019 refseq) Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
165 greater mouse-eared bat (2019 Broad) Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU SAMN07678038 PRJNA399444 2019-01-16 mammals
166 greater pipefish (v1.1 2019) Syngnathus acus GCA_901709675.1_fSynAcu1.1 SAMEA104381750 PRJEB32741 2019-05-29 fish
167 greater wax moth (Carbio01_MB 2019 genbank) Galleria mellonella GCA_003640425.2_ASM364042v2 SAMN10148411 PRJNA494147 2019-11-06 invertebrate
168 green algae C.reinhardtii (v1 CC-503 cw92 v1 2007) Chlamydomonas reinhardtii GCF_000002595.1_v3.0 SAMN02953692 PRJNA12260 2007-10-15 plants
169 green algae C.variabilis (NC64A 2010 genbank) Chlorella variabilis GCA_000147415.1_v_1.0 SAMN02744065 PRJNA45853 2010-09-16 plants
170 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 genbank) Chlamydomonas reinhardtii GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 SAMN02953692 PRJNA12260 2018-01-26 plants
171 green monkey 1994-021 (2014 genbank) Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1 SAMN01760484 PRJNA168621 2014-03-25 primates
172 green sea turtle (BGI 2013) Chelonia mydas GCF_000344595.1_CheMyd_1.0 SAMN02981410 PRJNA104937 2013-03-18 vertebrate
173 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri SAMN12612360 PRJNA561941 2020-11-05 vertebrate
174 Hawaiian crow (2021 genbank) Corvus hawaiiensis GCA_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04 birds
175 Hawaiian monk seal (2017 Johns Hopkins U refseq) Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
176 Hawaiian monk seal (2017 Johns Hopkins U genbank) Neomonachus schauinslandi GCA_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
177 Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020) Sturnira hondurensis GCF_014824575.1_WHU_Shon_v2 SAMN12282880 PRJNA554734 2020-09-30 mammals
178 hooded crow (v2 S_Up_H32 2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 SAMN02143031 PRJNA192205 2017-03-08 birds
179 hooded crow (v5 S_Up_H32 2021) Corvus cornix cornix GCF_000738735.5_ASM73873v5 SAMN02143031 PRJNA192205 2021-02-04 birds
180 horse (Twilight 2007 genbank) Equus caballus GCA_000002305.1_EquCab2.0 SAMN02953672 PRJNA18661 2007-10-29 mammals
181 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 n/a PRJNA20689 2017-09-15 mammals
182 human (GRCh38.p13 2019) Homo sapiens GCF_000001405.39_GRCh38.p13 n/a PRJNA31257 2019-02-28 primates
183 human (GRCh38.p14 2022) Homo sapiens GCF_000001405.40_GRCh38.p14 n/a PRJNA31257 2022-02-03 primates
184 human betaherpesvirus 6A (U1102 1995 genbank) Human betaherpesvirus 6A GCA_000845685.2_ViralProj14462 n/a PRJNA485481 2018-02-16 viral
185 human T2T CHM13 v2.0 Homo sapiens GCA_009914755.4_T2T-CHM13v2.0 SAMN03255769 PRJNA559484 2022-01-24 primates
186 Iberian mole (v1 TD23 2020) Talpa occidentalis GCF_014898055.1_MPIMG_talOcc4 SAMN10160270 PRJNA494291 2020-10-19 mammals
187 Iberian mole (v2 TD23 2020) Talpa occidentalis GCF_014898055.2_MPIMG_talOcc4v2 SAMN10160270 PRJNA494291 2020-10-19 mammals
188 Indian glassy fish (v1 2019) Parambassis ranga GCF_900634625.1_fParRan2.1 SAMEA4675621 PRJEB30257 2019-02-06 fish
189 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA SAMN07596545 PRJNA401159 2018-02-07 fish
190 Jamaican fruit-eating bat (US092 2019 Broad) Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU SAMN07678132 PRJNA399471 2019-01-16 mammals
191 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 SAMN03989050 PRJNA292031 2016-03-01 birds
192 Jerdon's jumping ant (DR-91 v8.5 2018) Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 SAMN08810140 PRJNA445978 2018-06-14 invertebrate
193 kakapo (Jane v1 2019) Strigops habroptila GCF_004027225.1_bStrHab1_v1.p SAMN09948751 PRJNA489135 2019-01-18 birds
194 kakapo (Jane v2 2020 genbank) Strigops habroptila GCA_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04 birds
195 Korean giant-fin mudskipper (v1 primary hap 2020 genbank) Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
196 Korean giant-fin mudskipper (v1 primary hap 2020 refseq) Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
197 lanner falcon (bFalBia1 primary hap 2022 genbank) Falco biarmicus GCA_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02 birds
198 large cabbage white (genbank 2021) Pieris brassicae GCA_905147105.1_ilPieBrab1.1 SAMEA7532735 PRJEB41887 2021-01-28 invertebrate
199 leatherback sea turtle (v3 2020 refseq G10K) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 SAMN12629498 PRJNA561993 2020-12-09 vertebrate
200 leatherback sea turtle (v1 2019 genbank G10K) Dermochelys coriacea GCA_009764565.1_rDerCor1.pri SAMN12629498 PRJNA561993 2019-12-19 vertebrate
201 Leishmania infantum (JPCM5 2011 kinetoplastids genbank) Leishmania infantum JPCM5 GCA_000002875.2_ASM287v2 SAMEA3138175 PRJNA12658 2011-11-08 invertebrate
202 Leishmania major (Friedlin 2011 kinetoplastids genbank) Leishmania major strain Friedlin GCA_000002725.2_ASM272v2 SAMEA3138173 PRJNA10724 2011-02-14 invertebrate
203 leopard (Maewha 2016 genbank) Panthera pardus GCA_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16 mammals
204 lesser Egyptian jerboa (JJ0015 2012 genbank) Jaculus jaculus GCA_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30 mammals
205 lesser kestrel (v1 2021) Falco naumanni GCF_017639655.1_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30 birds
206 lettuce (Salinas v7 2018) Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2018-01-09 plants
207 lettuce (Salinas v8 2020) Lactuca sativa GCF_002870075.3_Lsat_Salinas_v8 SAMN01730979 PRJNA173551 2020-04-13 plants
208 live sharksucker (v1 2019) Echeneis naucrates GCF_900963305.1_fEcheNa1.1 SAMEA4966390 PRJEB31992 2019-04-11 fish
209 lumpfish (2019 genbank) Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23 fish
210 Ma's night monkey genbank Aotus nancymaae GCA_000952055.2_Anan_2.0 SAMN03121886 PRJNA251539 2017-06-09 primates
211 Malayan pangolin (MP_PG03-UM 2016 genbank) Manis javanica GCA_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14 mammals
212 malo sina (v1 2012) Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b SAMN02981362 PRJNA70533 2012-01-19 plants
213 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 SAMN04622665 PRJNA317650 2016-05-22 fish
214 meadow brown (genbank 2021) Maniola jurtina GCA_905333055.1_ilManJurt1.1 SAMEA7523158 PRJEB43489 2021-03-19 invertebrate
215 meerkat (BS45 2019 Broad) Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU SAMN07678040 PRJNA399357 2019-01-15 mammals
216 meercat (VVHF042 2019 DNA Zoo genbank) Suricata suricatta GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC SAMN11840572 PRJNA540846 2019-07-03 mammals
217 melon fly (v1 USDA-PBARC White Pupae T1 2014) Zeugodacus cucurbitae GCF_000806345.1_ASM80634v1 SAMN03083541 PRJNA259565 2014-12-23 invertebrate
218 minke whale (2013 genbank) Balaenoptera acutorostrata scammoni GCA_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31 mammals
219 mites & ticks V.jacobsoni (v1 VJ856 2017) Varroa jacobsoni GCF_002532875.1_vjacob_1.0 SAMN07256664 PRJNA391052 2017-10-10 invertebrate
220 Mongolian gerbil (US013 2019 Broad) Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU SAMN07678137 PRJNA399432 2019-01-16 mammals
221 moth S.litura (Ishihara v1 2017) Spodoptera litura GCF_002706865.1_ASM270686v1 SAMN05845584 PRJNA344815 2017-10-25 invertebrate
222 mung bean (VC1973A 2015 genbank) Vigna radiata var. radiata GCA_000741045.2_Vradiata_ver6 SAMN02720863 PRJNA243847 2015-10-28 plants
223 mute swan (bCygOlo1 v1 primary hap 2019) Cygnus olor GCA_009769625.1_bCygOlo1.pri SAMN12621369 PRJNA561960 2019-12-23 birds
224 mute swan (bCygOlo1 v1 alternate hap 2019) Cygnus olor GCA_009769485.1_bCygOlo1.alt SAMN12621369 PRJNA561961 2019-12-19 birds
225 naked mole-rat (NMR 29 2012 genbank) Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17 mammals
226 narwhal (BS41 2019 Broad) Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU SAMN07678024 PRJNA399349 2019-01-16 mammals
227 nematode C.briggsae (AF16 v1 2008) Caenorhabditis briggsae GCF_000004555.1_ASM455v1 n/a PRJNA10731 2008-05-01 invertebrate
228 New South Wales waratah (AGSP 2013) Amborella trichopoda GCF_000471905.2_AMTR1.0 SAMN02313977 PRJNA212863 2013-09-30 plants
229 nine-banded armadillo (v3.0 3-136 2012 Baylor genbank) Dasypus novemcinctus GCA_000208655.2_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
230 nine-banded armadillo (v3.0 3-136 2012 Baylor refseq) Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
231 northern elephant seal (v2 JK_09032017 2021) Mirounga angustirostris GCF_021288785.1_ASM2128878v2 SAMN13072016 PRJNA512907 2021-12-26 mammals
232 northern house mosquito (v1 TS 2021) Culex pipiens pallens GCF_016801865.1_TS_Cpip_V1 SAMN16414976 PRJNA668557 2021-02-02 invertebrate
233 northern pike (2020 genbank) Esox lucius GCA_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05 fish
234 northern white-cheeked gibbon (2012 GGSC) Nomascus leucogenys GCA_000146795.3_Nleu_3.0 SAMN02981257 PRJNA13975 2012-12-08 primates
235 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10 mammals
236 olive baboon (2017 HGSC RefSeq) Papio anubis GCF_000264685.3_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
237 olive baboon (2017 HGSC genbank) Papio anubis GCA_000264685.2_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
238 painted lady (genbank 2021) Vanessa cardui GCA_905220365.1_ilVanCard2.1 SAMEA7523147 PRJEB42869 2021-02-16 invertebrate
239 pale spear-nosed bat (MPI-MPIP v1 2019) Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 2019-02-07 mammals
240 pea aphid (AL4f v1 2019) Acyrthosiphon pisum GCF_005508785.1_pea_aphid_22Mar2018_4r6ur SAMN10253041 PRJNA496478 2019-05-20 invertebrate
241 peregrine falcon (bFalPer1 primary hap 2022 genbank) Falco peregrinus GCA_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02 birds
242 pigeon pea (v1 2016 BGI) Cajanus cajan GCF_000340665.1_C.cajan_V1.0 SAMN02981370 PRJNA72815 2016-09-29 plants
243 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 SAMN12618724 PRJNA561467 2019-09-06 fish
244 platypus (Pmale09 2018 BGI) Ornithorhynchus anatinus GCA_002966995.1_ASM296699v1 SAMN08537700 PRJNA433451 2018-03-02 mammals
245 platypus (Pmale09 v1 2019) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 SAMN08537700 PRJNA489114 2019-02-07 mammals
246 platypus (Pmale09 v3 2020) Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 SAMN08537700 PRJNA489114 2020-04-13 mammals
247 polar bear (Baiyulong BGI 2014 genbank) Ursus maritimus GCA_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09 mammals
248 prehistoric monster fish (2019 genbank) Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30 fish
249 pronghorn (BS35 2019 Broad) Antilocapra americana GCA_004027515.1_AntAmePen_v1_BIUU SAMN07678063 PRJNA399373 2019-01-16 mammals
250 Przewalski's horse (Burgud 2014 genbank) Equus przewalskii GCA_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05 mammals
251 puma (SC36_Marlon 2018 genbank) Puma concolor GCA_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19 mammals
252 pygmy chimpanzee (Ulindi genbank 2015) Pan paniscus GCA_000258655.2_panpan1.1 SAMEA1029457 PRJNA49285 2015-08-18 primates
253 pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank) Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 SAMN31719513 PRJNA901930 2022-11-27 mammals
254 rabbit (New Zealand White DNA-2018 2021 genbank) Oryctolagus cuniculus GCA_009806435.2_UM_NZW_1.0 SAMN12179861 PRJNA274594 2021-02-04 mammals
255 rabbit (Thorbecke 2009 Broad genbank) Oryctolagus cuniculus GCA_000003625.1_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20 mammals
256 red admiral (genbank 2021) Vanessa atalanta GCA_905147765.2_ilVanAtal1.2 SAMEA7523145 PRJEB41956 2021-09-28 invertebrate
257 red-crested turaco (2014 BGI) Tauraco erythrolophus GCF_000709365.1_ASM70936v1 SAMN02339893 PRJNA212908 2014-06-25 birds
258 red-legged seriema (BGI_N322 2014 BGI) Cariama cristata GCF_000690535.1_ASM69053v1 SAMN02318733 PRJNA212889 2014-05-12 birds
259 red mason bee (LIB18336 2019) Osmia bicornis bicornis GCF_004153925.1_Obicornis_v3 SAMN05967202 PRJNA285788 2019-02-11 invertebrate
260 reedfish (2019) Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 SAMEA104026374 PRJEB31579 2019-03-26 vertebrate
261 Rhesus monkey (2015 Baylor) Macaca mulatta GCA_000772875.3_Mmul_8.0.1 n/a PRJNA214746 2015-11-30 primates
262 rifleman (BGI 2014) Acanthisitta chloris GCF_000695815.1_ASM69581v1 SAMN02318032 PRJNA212877 2014-05-27 birds
263 ring-tailed lemur BS26 Broad 2019 Lemur catta GCA_004024665.1_LemCat_v1_BIUU SAMN07678092 PRJNA399402 2019-01-15 primates
264 Rio pearlfish (Nwh7 v1 2020) Nematolebias whitei GCF_014905685.1_NemWhi1 SAMN12588121 PRJNA560526 2020-10-22 fish
265 river trout (v1 2019) Salmo trutta GCF_901001165.1_fSalTru1.1 SAMEA994732 PRJEB32115 2019-06-02 fish
266 Ryukyu mouse (v1 2017 EBI genbank) Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28 mammals
267 Ryukyu mouse (v1 2017 EBI refseq) Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28 mammals
268 Saker falcon (bFalChe1 primary hap 2022 genbank) Falco cherrug GCA_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02 birds
269 salmon louse (v1.1 2020) Lepeophtheirus salmonis GCF_016086655.2_UVic_Lsal_1.1 SAMN16628719 PRJNA673901 2020-12-16 invertebrate
270 saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank) Ammospiza caudacuta GCA_027887145.1_bAmmCau1.pri SAMN28421630 PRJNA839452 2023-01-18 birds
271 sea anemones (CC7 2015 genbank) Exaiptasia diaphana GCA_001417965.1_Aiptasia_genome_1.1 SAMN03839803 PRJNA261862 2015-10-28 invertebrate
272 sea otter (GAN:26980312 2017 genbank) Enhydra lutris kenyoni GCA_002288905.2_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11 mammals
273 SARS-CoV-2 (Jan 2020 COVID-19) Severe acute respiratory syndrome coronavirus 2 GCF_009858895.2_ASM985889v3 n/a PRJNA485481 2020-01-17 viral
274 segmented worms (v1 2012) Helobdella robusta GCF_000326865.1_Helobdella_robusta_v1.0 SAMN02769625 PRJNA175704 2012-12-20 invertebrate
275 Siamese fighting fish (v2 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 SAMEA104381735 PRJEB30365 2019-03-20 fish
276 Siamese fighting fish (v3 2020) Betta splendens GCF_900634795.3_fBetSpl5.3 SAMEA104381735 PRJEB30365 2020-08-25 fish
277 silvery gibbon (v1 HM0894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.1_HMol SAMN12851060 PRJNA575281 2020-01-03 primates
278 silvery gibbon (v2 HMO894 2020 UC Santa Cruz) Hylobates moloch GCF_009828535.2_HMol_V2 SAMN12851060 PRJNA575281 2020-02-13 primates
279 slow loris Nycticebus coucang GCA_004027815.1_NycCou_v1_BIUU SAMN07678100 PRJNA399409 2019-01-16 primates
280 small Madagascar hedgehog Echinops telfairi GCA_000313985.1_EchTel2.0 SAMN00216137 PRJNA12590 2012-11-28 mammals
281 smalltooth sawfish (2019 genbank) Pristis pectinata GCA_009764475.1_sPriPec2.pri SAMN12629505 PRJNA562009 2019-12-19 vertebrate
282 snowberry fruit fly (East Lansing v1.0 2016) Rhagoletis zephyria GCF_001687245.1_Rhagoletis_zephyria_1.0 SAMN04977950 PRJNA321204 2016-07-19 invertebrate
283 sockeye salmon (On170113-E2 v1 2019) Oncorhynchus nerka GCF_006149115.1_Oner_1.0 SAMN11519041 PRJNA530256 2019-06-07 fish
284 southern grasshopper mouse (US017 2019 Broad) Onychomys torridus GCA_004026725.1_OnyTor_v1_BIUU SAMN07678022 PRJNA399348 2019-01-16 mammals
285 southern tamandua (Broad 2019) Tamandua tetradactyla GCA_004025105.1_TamTet_v1_BIUU SAMN07678112 PRJNA399420 2019-01-15 mammals
286 southern two-toed sloth (US054 2019 Broad) Choloepus didactylus GCA_004027855.1_ChoDid_v1_BIUU SAMN07678073 PRJNA399383 2019-01-16 mammals
287 southern white rhinoceros (SDZICR_KB13650 2012 genbank) Ceratotherium simum simum GCA_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31 mammals
288 soybean (US DOE JGI-PGF v2.0 2010) Glycine max GCF_000004515.4_Glycine_max_v2.0 SAMN00002965 PRJNA19861 2015-11-04 plants
289 soybean (US DOE JGI-PGF v2.1 2018) Glycine max GCF_000004515.5_Glycine_max_v2.1 SAMN00002965 PRJNA19861 2018-07-24 plants
290 speckled wood butterfly (genbank 2021) Pararge aegeria GCA_905163445.1_ilParAegt1.1 SAMEA7532732 PRJEB42039 2021-01-28 invertebrate
291 sperm whale (SW-GA 2019) Physeter catodon GCF_002837175.2_ASM283717v2 SAMN07836523 PRJNA411766 2019-03-08 mammals
292 sponges A.queenslandica (v1.0 2010 JGI-PGF) Amphimedon queenslandica GCF_000090795.1_v1.0 SAMN02743868 PRJNA39517 2010-05-28 invertebrate
293 sterlet (v1 Gen_M01 2020) Acipenser ruthenus GCF_010645085.1_ASM1064508v1 SAMN12612932 PRJNA561280 2020-02-19 vertebrate
294 stony coral S.pistillata (v1 CSM Monaco 2017) Stylophora pistillata GCF_002571385.1_Stylophora_pistillata_v1 SAMN03491624 PRJNA281535 2017-10-17 invertebrate
295 Sumatran orangutan (2018 genbank) Pongo abelii GCA_002880775.3_Susie_PABv2 SAMN06275555 PRJNA369439 2018-01-19 primates
296 Swainson's thrush (bCatUst1 v1 primary hap 2019) Catharus ustulatus GCF_009819885.1_bCatUst1.pri SAMN12618602 PRJNA561933 2019-12-31 birds
297 Swainson's thrush (bCatUst1 v1 alternate hap 2019) Catharus ustulatus GCA_009819505.1_bCatUst1.alt SAMN12618602 PRJNA561934 2019-12-23 birds
298 swamp sparrow (bMelGeo1 primary hap 2023 genbank) Melospiza georgiana GCA_028018845.1_bMelGeo1.pri SAMN22787412 PRJNA915609 2023-01-31 birds
299 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 SAMN02953780 PRJNA51853 2011-02-17 mammals
300 thale cress (tair10 Columbia 2011) Arabidopsis thaliana GCF_000001735.3_TAIR10 SAMN03081427 PRJNA10719 2011-05-11 plants
301 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 SAMN00210855 PRJNA61725 2011-11-29 mammals
302 thorny skate (CabotCenter1 v1 2020 genbank) Amblyraja radiata GCA_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
303 thorny skate (CabotCenter1 v1 2020 refseq) Amblyraja radiata GCF_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
304 tiger tail seahorse (QL1 v1 2016) Hippocampus comes GCF_001891065.1_H_comes_QL1_v1 SAMN04531611 PRJNA314292 2016-12-08 fish
305 tomato (v3.0 Heinz 1706 2018) Solanum lycopersicum GCF_000188115.4_SL3.0 SAMN02981290 PRJNA119 2018-04-18 plants
306 tsetse fly (v1 IAEA_lab_2018 2020) Glossina fuscipes GCF_014805625.1_Yale_Gfus_2 SAMN13613662 PRJNA596165 2020-09-30 invertebrate
307 Ugandan red Colobus (RC106 v1 2017) Piliocolobus tephrosceles GCA_002776525.1_ASM277652v1 SAMN07735529 PRJNA413051 2017-11-16 primates
308 Ugandan red Colobus (RC106 v2 2018) Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 SAMN07735529 PRJNA413051 2018-09-11 primates
309 Ugandan red Colobus (RC106 v3 2019) Piliocolobus tephrosceles GCF_002776525.3_ASM277652v3 SAMN07735529 PRJNA413051 2019-12-12 primates
310 Ugandan red Colobus (RC106 v4 2019) Piliocolobus tephrosceles GCF_002776525.4_ASM277652v4 SAMN07735529 PRJNA413051 2019-12-12 primates
311 Upper Galilee mountains blind mole rat (#2095 2014 genbank) Nannospalax galili GCA_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05 mammals
312 valley oak (v3.0 2019) Quercus lobata GCF_001633185.1_ValleyOak3.0 SAMN10584531 PRJNA308314 2019-01-11 plants
313 vegetable marrow (v1 mu-cu-16 2017) Cucurbita pepo subsp. pepo GCF_002806865.1_ASM280686v2 SAMN07125871 PRJNA386743 2017-12-07 plants
314 wasp C.solmsi marchali (v1 2013) Ceratosolen solmsi marchali GCF_000503995.1_CerSol_1.0 SAMN02953852 PRJNA178998 2013-12-04 invertebrate
315 water buffalo (Mediterranean 2013) Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0 SAMN02191888 PRJNA207334 2013-09-30 mammals
316 Weddell seal (WS11-02 2013 genbank) Leptonychotes weddellii GCA_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29 mammals
317 western European hedgehog (2012 genbank) Erinaceus europaeus GCA_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19 mammals
318 western lowland gorilla (Susie 2016) Gorilla gorilla gorilla GCA_900006655.3_Susie3 SAMEA3541598 PRJEB10880 2016-12-22 primates
319 western painted turtle (v303 2014) Chrysemys picta bellii GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 SAMN02713681 PRJNA78657 2014-03-31 vertebrate
320 western painted turtle (v304 RCT428 2020) Chrysemys picta bellii GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 SAMN02713681 PRJNA78657 2020-08-21 vertebrate
321 western predatory mite (v1.0 2012) Galendromus occidentalis GCF_000255335.1_Mocc_1.0 SAMN00849407 PRJNA62309 2012-03-27 invertebrate
322 wheat stem sawfly (v1 2014) Cephus cinctus GCF_000341935.1_Ccin1 SAMN02905554 PRJNA168335 2014-07-09 invertebrate
323 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 SAMN03488028 PRJNA281425 2019-04-05 mammals
324 white leghorn X broiler chicken (leghorn haplotype v1 2021) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-01-19 birds
325 white-tailed deer (Pink-7 2017 genbank) Odocoileus virginianus texanus GCA_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20 mammals
326 white-tufted-ear marmoset (CJ-08-46 2017) Callithrix jacchus GCA_002754865.1_ASM275486v1 SAMN07586072 PRJNA401030 2017-11-06 primates
327 white-tufted-ear marmoset (2010 Wash U) Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 SAMN02981242 PRJNA20401 2010-01-22 primates
328 white-tufted-ear marmoset (cj1700 genbank) Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 SAMN12783337 PRJNA566173 2019-11-15 primates
329 wild Bactrian camel (CB1 Naran 2013 genbank) Camelus ferus GCA_000311805.2_CB1 SAMN01910617 PRJNA76177 2013-07-30 mammals
330 wild emmer wheat (Zavitan Atlit2015 v2.0 2019) Triticum dicoccoides GCF_002162155.1_WEW_v2.0 SAMN04448013 PRJNA310175 2019-02-04 plants
331 wild peanut A.duranensis (v1 V14167 2017) Arachis duranensis GCF_000817695.2_Aradu1.1 SAMN02982871 PRJNA258023 2017-04-25 plants
332 wild strawberry (2011 genbank) Fragaria vesca subsp. vesca GCA_000184155.1_FraVesHawaii_1.0 SAMN00120060 PRJNA60037 2011-02-24 plants
333 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 SAMN08774045 PRJNA445296 2018-12-14 birds
334 woodchuck (CNAG 2019) Marmota monax GCA_901343595.1_MONAX5 SAMEA91498168 PRJEB19462 2019-09-13 mammals
335 woodchuck (v1.0 LI92 2021) Marmota monax GCF_021218885.1_Marmota_monax_Labrador192_V1.0 SAMN21332666 PRJNA761405 2021-12-15 mammals
336 Yangtze finless porpoise (v1 2018 refseq) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
337 Yangtze River dolphin (v1 BGI 2013 genbank) Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31 mammals
338 Yangtze River dolphin (v1 BGI 2013 refseq) Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31 mammals
339 Yangtze finless porpoise (v1 wild 2018 genbank) Neophocaena asiaeorientalis asiaeorientalis GCA_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
340 yellow-bellied marmot (v1 2018) Marmota flaviventris GCF_003676075.1_ASM367607v1 SAMN10078668 PRJNA491472 2018-10-22 mammals
341 yellow-bellied marmot (SJ_83 v2.0 2019) Marmota flaviventris GCF_003676075.2_GSC_YBM_2.0 SAMN10078668 PRJNA491472 2019-05-24 mammals
342 yellow-footed antechinus (v1 Samford, QLD, Australia AdamAnt 2021) Antechinus flavipes GCA_016432865.1_AdamAnt SAMN16807749 PRJNA565840 2021-01-06 mammals
343 yellow-throated sandgrouse (BGI_N339 2014 BGI) Pterocles gutturalis GCF_000699245.1_ASM69924v1 SAMN02339892 PRJNA212906 2014-06-09 birds
344 yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017) Seriola lalandi dorsalis GCF_002814215.1_Sedor1 SAMN04902367 PRJNA319656 2017-12-08 fish
345 zebra finch (Black17 v1 2019 genbank) Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
346 zebra finch (Black17 v1 2019 refseq) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
347 zebu cattle (Nelore 2014 genbank) Bos indicus GCA_000247795.2_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25 mammals
348 zig-zag eel (v1.1 2018) Mastacembelus armatus GCF_900324485.1_fMasArm1.1 SAMEA104026378 PRJEB25769 2018-03-31 fish

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 188 assemblies assembly stats track stats
Mammals 417 assemblies assembly stats track stats
Birds 274 assemblies assembly stats track stats
Fishes 285 assemblies assembly stats track stats
other vertebrates 119 assemblies assembly stats track stats
Invertebrates 601 assemblies assembly stats track stats
Plants 230 assemblies assembly stats track stats
Fungi 544 assemblies assembly stats track stats
Viruses 264 assemblies assembly stats track stats
Bacteria 69 assemblies assembly stats track stats
legacy/superseded 347 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 445 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats