Legacy Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/legacy/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Legacy Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
clade
1 aardvark (BS58 2019 Broad) Orycteropus afer GCA_004365145.1_OryAfe_v1_BIUU SAMN07678101 PRJNA399461 2019-03-22 mammals
2 African clawed frog (2016) Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 SAMN04518361 PRJNA313213 2016-08-09 vertebrate
3 African grass rat (paternal X 2020 VGP) Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27 mammals
4 African savanna elephant (2009 genbank) Loxodonta africana GCA_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15 mammals
5 alkali bee (v1.2 Touchet_males 2018) Nomia melanderi GCF_003710045.1_USU_Nmel_1.2 SAMN10185933 PRJNA494873 2018-11-02 invertebrate
6 alpaca (2015 BGI) Vicugna pacos huacaya GCA_000767525.1_Vi_pacos_V1.0 SAMN02996813 PRJNA233565 2015-02-11 mammals
7 alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U) Vicugna pacos GCF_000164845.3_VicPac3.1 SAMN01096418 PRJNA544883 2019-07-15 mammals
8 Alpine marmot (2015) Marmota marmota marmota GCF_001458135.1_marMar2.1 SAMEA3214822 PRJEB8272 2015-11-20 mammals
9 American beaver (US014 2019 Broad) Castor canadensis GCA_004027675.1_CasCan_v1_BIUU SAMN07678136 PRJNA399431 2019-01-16 mammals
10 American bison (2014 genbank) Bison bison bison GCA_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08 mammals
11 American pika 3.0 (2012 Broad genbank) Ochotona princeps GCA_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27 mammals
12 amphipods H.azteca (HAZT.00-mixed v2.0 2016) Hyalella azteca GCF_000764305.1_Hazt_2.0 SAMN02978968 PRJNA243935 2016-07-20 invertebrate
13 Amur tiger (TaeGuk 2013 genbank) Panthera tigris altaica GCA_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06 mammals
14 Anna's hummingbird (BGI_N300 2019 genbank VGP) Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16 birds
15 ant N.fulva (TAMU-Nful-2015 v1.0 2019) Nylanderia fulva GCF_005281655.1_TAMU_Nfulva_1.0 SAMN10848236 PRJNA517949 2019-05-13 invertebrate
16 ant T.cornetzi (Tcor2-1 v1.0 2016 BGI) Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 SAMN03982882 PRJNA292627 2016-03-25 invertebrate
17 Arabian camel (2014 genbank) Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 SAMN03000646 PRJNA234474 2014-10-21 mammals
18 Arctic fox (US066 2019 Broad) Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU SAMN07678118 PRJNA399424 2019-01-15 mammals
19 ascomycetes A.fischeri (v3 NRRL 181 2006) Aspergillus fischeri NRRL 181 GCF_000149645.2_ASM14964v3 SAMN02953637 PRJNA15672 2006-12-14 fungi
20 ass (Maral har 2015 genbank) Equus asinus GCA_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02 mammals
21 Atlantic halibut (2019 genbank VGP) Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31 fish
22 Atlantic herring (v1) Clupea harengus GCF_900700415.1_Ch_v2.0.2 SAMEA5339254 PRJEB31270 2019-04-16 fish
23 Atlantic salmon (genbank 2021) Salmo salar GCA_905237065.2_Ssal_v3.1 SAMEA8062739 PRJEB43080 2021-04-21 fish
24 B.malayi (v3 2008 agent of lymphatic filariasis) Brugia malayi GCF_000002995.3_ASM299v2 SAMN02953652 PRJNA10729 2008-03-04 invertebrate
25 Bactrian camel (Alxa 2014 genbank) Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23 mammals
26 barn owl BGI_N341 (2014) Tyto alba GCF_000687205.1_ASM68720v1 SAMN02339894 PRJNA212909 2014-05-08 birds
27 barn owl (2020) Tyto alba alba GCF_902150015.1_genome_assembly_l500 SAMEA5733888 PRJEB33158 2020-02-10 birds
28 basidiomycetes S.commune (v1 H4-8 2010) Schizophyllum commune H4-8 GCF_000143185.1_v1.0 SAMN02194201 PRJNA32757 2010-07-02 fungi
29 beet (2015) Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 SAMN02182557 PRJNA41497 2015-07-07 plants
30 beluga whale (GAN/ISIS: 26980492/103006 v2 2017) Delphinapterus leucas GCA_002288925.2_ASM228892v2 SAMN06216270 PRJNA360851 2017-09-11 mammals
31 black-legged tick (U.Maryland v1 2021) Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi SAMN16793453 PRJNA678334 2021-02-23 invertebrate
32 black snub-nosed monkey (Rb0 v1 refseq 2016) Rhinopithecus bieti GCF_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
33 black snub-nosed monkey (Rb0 v1 genbank 2016) Rhinopithecus bieti GCA_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
34 black swan (v1 Queensland, Australia AKBS03 2020) Cygnus atratus GCF_013377495.1_Cygnus_atratus_primary_v1.0 SAMN15332785 PRJNA640810 2020-06-30 birds
35 blue whale (JJ_BM4_2016_0621 v2 2020 VGP) Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 SAMN12287136 PRJNA554522 2020-02-03 mammals
36 blunt-snouted clingfish (2019 genbank VGP) Gouania willdenowi GCA_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
37 Bolivian squirrel monkey (3227 Broad 2011) Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 SAMN02981369 PRJNA67945 2011-11-17 primates
38 Bolivian squirrel monkey (100643 v2.0 BCM 2021) Saimiri boliviensis boliviensis GCF_016699345.1_BCM_Sbol_2.0 SAMN16846876 PRJNA679316 2021-01-12 primates
39 brown argus (genbank 2021) Aricia agestis GCA_905147365.1_ilAriAges1.1 SAMEA7523300 PRJEB41901 2021-01-28 invertebrate
40 brown bear (GAN/ISIS:MIG12 v1 2018) Ursus arctos horribilis GCF_003584765.1_ASM358476v1 SAMN09907428 PRJNA487641 2018-09-20 mammals
41 brown dog tick (v1 Rsan-2018 2020) Rhipicephalus sanguineus GCF_013339695.1_ASM1333969v1 SAMN14941062 PRJNA633311 2020-06-16 invertebrate
42 budgerigar (maternal Z 2020 genbank VGP) Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13 birds
43 butterfly L.sinapis (2021 genbank) Leptidea sinapis GCA_905404315.1_ilLepSina1.1 SAMEA7523467 PRJEB43998 2021-04-15 invertebrate
44 butterfly P.napi (v1.1 genbank 2021) Pieris napi GCA_905475465.1_ilPieNapi1.1 SAMEA7523287 PRJEB44052 2021-04-15 invertebrate
45 cabbage white (genbank 2021) Pieris rapae GCA_905147795.1_ilPieRapa1.1 SAMEA7523164 PRJEB41952 2021-01-28 invertebrate
46 California sea lion (BS06 2019 Broad) Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU SAMN07678053 PRJNA399369 2019-01-15 mammals
47 California sea lion (v1 2019 VGP) Zalophus californianus GCA_009762305.1_mZalCal1.pri SAMN12368149 PRJNA559673 2019-12-18 mammals
48 Canada lynx (LIC74 v1 2019 VGP) Lynx canadensis GCF_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 2019-07-26 mammals
49 Cape golden mole (BS56 2019 Broad) Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU SAMN07678135 PRJNA399474 2019-01-16 mammals
50 carmine bee-eater (2014 BGI) Merops nubicus GCF_000691845.1_ASM69184v1 SAMN02338310 PRJNA212898 2014-05-16 birds
51 cassava (v6 AM560-2 2016 DOE) Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 SAMN04116956 PRJNA234389 2016-06-10 plants
52 cattle (Hereford 2015) Bos taurus GCA_000003205.6_Btau_5.0.1 SAMN02898106 PRJNA12555 2015-11-19 mammals
53 cattle (Hereford L1 Dominette 01449 42190680 v2 2018 USDA) Bos taurus GCF_002263795.1_ARS-UCD1.2 SAMN03145444 PRJNA391427 2018-04-11 mammals
54 Chacoan peccary (BS18 v1 2019 Broad) Catagonus wagneri GCA_004024745.1_CatWag_v1_BIUU SAMN07678067 PRJNA399378 2019-01-15 mammals
55 channel bull blenny (2019 genbank VGP) Cottoperca gobio GCA_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06 fish
56 channel catfish (USDA103 v1 2016) Ictalurus punctatus GCF_001660625.1_IpCoco_1.2 SAMN03486842 PRJNA281269 2016-06-21 fish
57 cheetah (AJU 981 2015) Acinonyx jubatus GCA_001443585.1_aciJub1 SAMN04127588 PRJNA297632 2015-11-13 mammals
58 chimney swift (M959 v1.0 2014) Chaetura pelagica GCF_000747805.1_ChaPel_1.0 SAMN03018471 PRJNA210808 2014-09-04 birds
59 chimpanzee genbank Pan troglodytes GCA_002880755.3_Clint_PTRv2 SAMN06272697 PRJNA369439 2018-01-19 primates
60 China rose (Old Blush v1 2018) Rosa chinensis GCF_002994745.1_RchiOBHm-V2 SAMN07737764 PRJNA413292 2018-03-13 plants
61 Chinese hamster (17A/GY CHO 2018) Cricetulus griseus GCF_003668045.1_CriGri-PICR SAMN07140313 PRJNA389969 2018-10-21 mammals
62 chuck-will's-widow (BGI_N321 v1 2014) Antrostomus carolinensis GCF_000700745.1_ASM70074v1 SAMN02318612 PRJNA212888 2014-06-10 birds
63 climbing perch (v1.1 2018 refseq VGP) Anabas testudineus GCF_900324465.1_fAnaTes1.1 SAMEA104026376 PRJEB25768 2018-03-31 fish
64 climbing perch (v1.2 2018 genbank VGP) Anabas testudineus GCA_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
65 clouded yellow (genbank 2021) Colias croceus GCA_905220415.1_ilColCroc2.1 SAMEA7523360 PRJEB42878 2021-02-16 invertebrate
66 common bottlenose dolphin (maternal Y genbank 2020 VGP) Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27 mammals
67 common bottlenose dolphin (MMES2002162SC 2016 genbank) Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28 mammals
68 common brushtail (genbank 2020 VGP) Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10 mammals
69 common carp (2014) Cyprinus carpio GCF_000951615.1_common_carp_genome SAMEA2757102 PRJEB7241 2014-11-03 fish
70 common cuckoo (BGI 2014) Cuculus canorus GCF_000709325.1_ASM70932v1 SAMN02298149 PRJNA212870 2014-06-17 birds
71 common house spider (v2 2017) Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 SAMN02364452 PRJNA167405 2017-04-14 invertebrate
72 common swift (bApuApu2 2021 VGP genbank) Apus apus GCA_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04 birds
73 common vampire bat (v2 DRU21DN04 2018 genbank) Desmodus rotundus GCA_002940915.2_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
74 common vampire bat (v2 DRU21DN04 2018 refseq) Desmodus rotundus GCF_002940915.1_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
75 Coquerel's sifaka 6110/Marcella (2015 genbank) Propithecus coquereli GCA_000956105.1_Pcoq_1.0 SAMN03121823 PRJNA251429 2015-03-23 primates
76 cowpea (IT97K-499-35 v1 2019) Vigna unguiculata GCF_004118075.1_ASM411807v1 SAMN06674009 PRJNA381312 2019-01-30 plants
77 crab-eating macaque WashU 2013 genbank Macaca fascicularis GCA_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
78 crab-eating macaque WashU 2013 refseq Macaca fascicularis GCF_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
79 degu (3935 2012 genbank) Octodon degus GCA_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01 mammals
80 dog (BS72 2019 Broad) Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU SAMN07678141 PRJNA399441 2019-01-16 mammals
81 domestic ferret (Sable ID 1420 FGSC 2011) Mustela putorius furo GCF_000215625.1_MusPutFur1.0 SAMN00149631 PRJNA59869 2011-06-02 mammals
82 domestic guinea pig (2N 2008 genbank) Cavia porcellus GCA_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03 mammals
83 domestic silkworm (genbank 2020) Bombyx mori GCA_014905235.2_Bmori_2016v1.0 SAMD00054089 PRJDB4947 2020-10-13 invertebrate
84 downy woodpecker (BGI 2014) Picoides pubescens GCF_000699005.1_ASM69900v1 SAMN02314405 PRJNA212874 2014-06-06 birds
85 E. coli (K-12 BW25113 2014 genbank) Escherichia coli BW25113 GCA_000750555.1_ASM75055v1 SAMN03013572 PRJNA257976 2014-09-09 bacteria
86 East African water lily (v1 Beijing-Zhang1983 2019) Nymphaea colorata GCF_008831285.1_ASM883128v1 SAMN12766378 PRJNA565347 2019-10-07 plants
87 Egyptian rousette (US006 2019 Broad) Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU SAMN07678121 PRJNA399428 2019-01-15 mammals
88 elephant shark (2013) Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 SAMN00000800 PRJNA18361 2013-12-11 vertebrate
89 eudicots lettuce (Salinas v7 2020) Lactuca sativa GCF_002870075.2_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2020-04-13 plants
90 Eurasian water vole (v1 2020) Arvicola amphibius GCF_903992535.1_mArvAmp1.1 SAMEA994740 PRJEB39550 2020-08-06 mammals
91 European peacock (2021 genbank) Nymphalis io GCA_905147045.1_ilAglIoxx1.1 SAMEA7523149 PRJEB41894 2021-01-28 invertebrate
92 European turtle dove (v1.1 2019 VGP) Streptopelia turtur GCA_901699155.1_bStrTur1.1 SAMEA994735 PRJEB32724 2019-06-05 birds
93 fall armyworm (Faw-zju 2020 genbank) Spodoptera frugiperda GCA_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
94 fall armyworm (Faw-zju v1.0 refseq 2020) Spodoptera frugiperda GCF_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
95 flier cichlid (MPI-CPG 2019 genbank VGP) Archocentrus centrarchus GCA_007364275.2_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01 fish
96 Florida manatee (Lorelei 2012 genbank) Trichechus manatus latirostris GCA_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23 mammals
97 fly D.santomea (v1.0 2021) Drosophila santomea GCF_016746245.1_Prin_Dsan_1.0 SAMN15573959 PRJNA647033 2021-01-25 invertebrate
98 fly D.sechellia (sech25 v1 2019 UC Irvine) Drosophila sechellia GCF_004382195.1_ASM438219v1 SAMN06827992 PRJNA383250 2019-04-16 invertebrate
99 fly D.simulans (w501 v3.0 2021) Drosophila simulans GCF_016746395.1_Prin_Dsim_3.0 SAMN06473875 PRJNA377886 2021-01-25 invertebrate
100 fly D.yakuba (2018) Drosophila yakuba GCF_000005975.2_dyak_caf1 SAMN02952910 PRJNA12366 2006-06-27 invertebrate
101 fly D.yakuba (v1 2021) Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 SAMN15573791 PRJNA647028 2021-01-25 invertebrate
102 Gaboon caecilian (2019 genbank VGP) Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 vertebrate
103 giant panda (2009 BGI) Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 SAMN00008160 PRJNA38683 2009-12-15 mammals
104 giant panda (Jingjing v1 2017) Ailuropoda melanoleuca GCA_002007445.1_ASM200744v1 SAMN04193337 PRJNA299083 2017-02-28 mammals
105 giant panda (Jingjing v2 2020) Ailuropoda melanoleuca GCF_002007445.1_ASM200744v2 SAMN04193337 PRJNA588422 2020-04-20 mammals
106 Glanville fritillary (genbank 2021) Melitaea cinxia GCA_905220565.1_ilMelCinx1.1 SAMEA7523475 PRJEB42891 2021-02-16 invertebrate
107 globe artichoke (v1 2C 2018) Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 SAMN03402638 PRJNA238069 2018-04-17 plants
108 goat (v1 San Clemente 2016 USDA genbank) Capra hircus GCA_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
109 goat (v1 San Clemente 2016 USDA refseq) Capra hircus GCF_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
110 golden eagle (v1.2 2019 VGP) Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 SAMEA994725 PRJEB27699 2019-07-08 birds
111 golden hamster (Baylor 2013 genbank) Mesocricetus auratus GCA_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29 mammals
112 golden snub-nosed monkey (2014 Novogene) Rhinopithecus roxellana GCA_000769185.1_Rrox_v1 SAMN02427086 PRJNA230020 2014-10-28 primates
113 gray mouse lemur genbank Microcebus murinus GCA_000165445.3_Mmur_3.0 SAMN06275470 PRJNA19967 2017-02-06 primates
114 great roundleaf bat (ML-2016 2016 genbank) Hipposideros armiger GCA_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06 mammals
115 greater horseshoe bat (v1 MPI-CBG 2019 genbank VGP) Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
116 greater horseshoe bat (v1 MPI-CBG 2019 refseq VGP) Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
117 greater mouse-eared bat (2019 Broad) Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU SAMN07678038 PRJNA399444 2019-01-16 mammals
118 greater pipefish (v1.1 2019 VGP) Syngnathus acus GCA_901709675.1_fSynAcu1.1 SAMEA104381750 PRJEB32741 2019-05-29 fish
119 green algae C.reinhardtii CC-503 cw92 (v1 2007) Chlamydomonas reinhardtii GCF_000002595.1_v3.0 SAMN02953692 PRJNA12260 2007-10-15 plants
120 green monkey 1994-021 (2014 genbank) Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1 SAMN01760484 PRJNA168621 2014-03-25 primates
121 green sea turtle (BGI 2013) Chelonia mydas GCF_000344595.1_CheMyd_1.0 SAMN02981410 PRJNA104937 2013-03-18 vertebrate
122 green sea turtle (v1 2020) Chelonia mydas GCF_015237465.1_rCheMyd1.pri SAMN12612360 PRJNA561941 2020-11-05 vertebrate
123 Hawaiian crow (VGP 2021 genbank) Corvus hawaiiensis GCA_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04 birds
124 Hawaiian monk seal (2017 Johns Hopkins U refseq) Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
125 Hawaiian monk seal (2017 Johns Hopkins U genbank) Neomonachus schauinslandi GCA_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
126 hooded crow (2017) Corvus cornix cornix GCF_000738735.2_ASM73873v2 SAMN02143031 PRJNA192205 2017-03-08 birds
127 horse (Twilight 2007 genbank) Equus caballus GCA_000002305.1_EquCab2.0 SAMN02953672 PRJNA18661 2007-10-29 mammals
128 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 n/a PRJNA20689 2017-09-15 mammals
129 Indian medaka Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA SAMN07596545 PRJNA401159 2018-02-07 fish
130 Jamaican fruit-eating bat (US092 2019 Broad) Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU SAMN07678132 PRJNA399471 2019-01-16 mammals
131 Japanese quail Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 SAMN03989050 PRJNA292031 2016-03-01 birds
132 Jerdon's jumping ant (DR-91 v8.5 2018) Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 SAMN08810140 PRJNA445978 2018-06-14 invertebrate
133 kakapo (Jane v1 2019 VGP) Strigops habroptila GCF_004027225.1_bStrHab1_v1.p SAMN09948751 PRJNA489135 2019-01-18 birds
134 kakapo (Jane v2 2020 genbank VGP) Strigops habroptila GCA_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04 birds
135 large cabbage white (genbank 2021) Pieris brassicae GCA_905147105.1_ilPieBrab1.1 SAMEA7532735 PRJEB41887 2021-01-28 invertebrate
136 leatherback sea turtle (v3 2020 refseq G10K VGP) Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 SAMN12629498 PRJNA561993 2020-12-09 vertebrate
137 leatherback sea turtle (v1 2019 genbank G10K VGP) Dermochelys coriacea GCA_009764565.1_rDerCor1.pri SAMN12629498 PRJNA561993 2019-12-19 vertebrate
138 lesser Egyptian jerboa (JJ0015 2012 genbank) Jaculus jaculus GCA_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30 mammals
139 lesser kestrel (v1 2021 VGP) Falco naumanni GCF_017639655.1_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30 birds
140 lettuce (Salinas v1 2018) Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2018-01-09 plants
141 leopard (Maewha 2016 genbank) Panthera pardus GCA_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16 mammals
142 lumpfish (2019 genbank VGP) Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23 fish
143 Ma's night monkey genbank Aotus nancymaae GCA_000952055.2_Anan_2.0 SAMN03121886 PRJNA251539 2017-06-09 primates
144 Malayan pangolin (MP_PG03-UM 2016 genbank) Manis javanica GCA_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14 mammals
145 malo sina (v1 2012) Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b SAMN02981362 PRJNA70533 2012-01-19 plants
146 mangrove rivulus Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 SAMN04622665 PRJNA317650 2016-05-22 fish
147 meadow brown (genbank 2021) Maniola jurtina GCA_905333055.1_ilManJurt1.1 SAMEA7523158 PRJEB43489 2021-03-19 invertebrate
148 meerkat (BS45 2019 Broad) Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU SAMN07678040 PRJNA399357 2019-01-15 mammals
149 melon fly (v1 USDA-PBARC White Pupae T1 2014) Zeugodacus cucurbitae GCF_000806345.1_ASM80634v1 SAMN03083541 PRJNA259565 2014-12-23 invertebrate
150 minke whale (2013 genbank) Balaenoptera acutorostrata scammoni GCA_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31 mammals
151 Mongolian gerbil (US013 2019 Broad) Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU SAMN07678137 PRJNA399432 2019-01-16 mammals
152 moth S.litura (Ishihara v1 2017) Spodoptera litura GCF_002706865.1_ASM270686v1 SAMN05845584 PRJNA344815 2017-10-25 invertebrate
153 mute swan (v1 2019 VGP) Cygnus olor GCA_009769625.1_bCygOlo1.pri SAMN12621369 PRJNA561960 2019-12-23 birds
154 naked mole-rat (NMR 29 2012 genbank) Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17 mammals
155 narwhal (BS41 2019 Broad) Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU SAMN07678024 PRJNA399349 2019-01-16 mammals
156 nematode C.briggsae (AF16 v1 2008) Caenorhabditis briggsae GCF_000004555.1_ASM455v1 n/a PRJNA10731 2008-05-01 invertebrate
157 New South Wales waratah (AGSP 2013) Amborella trichopoda GCF_000471905.2_AMTR1.0 SAMN02313977 PRJNA212863 2013-09-30 plants
158 nine-banded armadillo (v3.0 3-136 2012 Baylor genbank) Dasypus novemcinctus GCA_000208655.2_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
159 nine-banded armadillo (v3.0 3-136 2012 Baylor refseq) Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
160 northern pike (2020 genbank VGP) Esox lucius GCA_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05 fish
161 northern white-cheeked gibbon (2012 GGSC) Nomascus leucogenys GCA_000146795.3_Nleu_3.0 SAMN02981257 PRJNA13975 2012-12-08 primates
162 Norway rat BN7 genbank Rattus norvegicus GCA_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10 mammals
163 olive baboon (2017 HGSC RefSeq) Papio anubis GCF_000264685.3_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
164 olive baboon (2017 HGSC genbank) Papio anubis GCA_000264685.2_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
165 painted lady (genbank 2021) Vanessa cardui GCA_905220365.1_ilVanCard2.1 SAMEA7523147 PRJEB42869 2021-02-16 invertebrate
166 pale spear-nosed bat (MPI-MPIP v1 2019 VGP) Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 2019-02-07 mammals
167 pea aphid (AL4f v1 2019) Acyrthosiphon pisum GCF_005508785.1_pea_aphid_22Mar2018_4r6ur SAMN10253041 PRJNA496478 2019-05-20 invertebrate
168 pigeon pea (v1 2016 BGI) Cajanus cajan GCF_000340665.1_C.cajan_V1.0 SAMN02981370 PRJNA72815 2016-09-29 plants
169 pike-perch Sander lucioperca GCF_008315115.1_SLUC_FBN_1 SAMN12618724 PRJNA561467 2019-09-06 fish
170 platypus (Pmale09 2018 BGI) Ornithorhynchus anatinus GCA_002966995.1_ASM296699v1 SAMN08537700 PRJNA433451 2018-03-02 mammals
171 platypus (Pmale09 v1 2019 VGP) Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 SAMN08537700 PRJNA489114 2019-02-07 mammals
172 platypus (Pmale09 v3 2020 VGP) Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 SAMN08537700 PRJNA489114 2020-04-13 mammals
173 polar bear (Baiyulong BGI 2014 genbank) Ursus maritimus GCA_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09 mammals
174 prehistoric monster fish (2019 genbank VGP) Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30 fish
175 pronghorn (BS35 2019 Broad) Antilocapra americana GCA_004027515.1_AntAmePen_v1_BIUU SAMN07678063 PRJNA399373 2019-01-16 mammals
176 Przewalski's horse (Burgud 2014 genbank) Equus przewalskii GCA_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05 mammals
177 puma (SC36_Marlon 2018 genbank) Puma concolor GCA_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19 mammals
178 pygmy chimpanzee (Ulindi genbank 2015) Pan paniscus GCA_000258655.2_panpan1.1 SAMEA1029457 PRJNA49285 2015-08-18 primates
179 rabbit (Thorbecke 2009 Broad genbank) Oryctolagus cuniculus GCA_000003625.1_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20 mammals
180 red admiral (genbank 2021) Vanessa atalanta GCA_905147765.2_ilVanAtal1.2 SAMEA7523145 PRJEB41956 2021-09-28 invertebrate
181 red-crested turaco (2014 BGI) Tauraco erythrolophus GCF_000709365.1_ASM70936v1 SAMN02339893 PRJNA212908 2014-06-25 birds
182 red-legged seriema (BGI_N322 2014 BGI) Cariama cristata GCF_000690535.1_ASM69053v1 SAMN02318733 PRJNA212889 2014-05-12 birds
183 red mason bee (LIB18336 2019) Osmia bicornis bicornis GCF_004153925.1_Obicornis_v3 SAMN05967202 PRJNA285788 2019-02-11 invertebrate
184 Rhesus monkey (2015 Baylor) Macaca mulatta GCA_000772875.3_Mmul_8.0.1 n/a PRJNA214746 2015-11-30 primates
185 rifleman (BGI 2014) Acanthisitta chloris GCF_000695815.1_ASM69581v1 SAMN02318032 PRJNA212877 2014-05-27 birds
186 ring-tailed lemur BS26 Broad 2019 Lemur catta GCA_004024665.1_LemCat_v1_BIUU SAMN07678092 PRJNA399402 2019-01-15 primates
187 Rio pearlfish (Nwh7 v1 2020) Nematolebias whitei GCF_014905685.1_NemWhi1 SAMN12588121 PRJNA560526 2020-10-22 fish
188 Ryukyu mouse (2017 EBI genbank) Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28 mammals
189 salmon louse (v1.1 2020) Lepeophtheirus salmonis GCF_016086655.2_UVic_Lsal_1.1 SAMN16628719 PRJNA673901 2020-12-16 invertebrate
190 sea otter (GAN:26980312 2017 genbank) Enhydra lutris kenyoni GCA_002288905.2_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11 mammals
191 Siamese fighting fish (v2 2019) Betta splendens GCF_900634795.2_fBetSpl5.2 SAMEA104381735 PRJEB30365 2019-03-20 fish
192 silvery gibbon Hylobates moloch GCF_009828535.1_HMol SAMN12851060 PRJNA575281 2020-01-03 primates
193 small Madagascar hedgehog Echinops telfairi GCA_000313985.1_EchTel2.0 SAMN00216137 PRJNA12590 2012-11-28 mammals
194 snowberry fruit fly (East Lansing v1.0 2016) Rhagoletis zephyria GCF_001687245.1_Rhagoletis_zephyria_1.0 SAMN04977950 PRJNA321204 2016-07-19 invertebrate
195 sockeye salmon (On170113-E2 v1 2019) Oncorhynchus nerka GCF_006149115.1_Oner_1.0 SAMN11519041 PRJNA530256 2019-06-07 fish
196 southern grasshopper mouse (US017 2019 Broad) Onychomys torridus GCA_004026725.1_OnyTor_v1_BIUU SAMN07678022 PRJNA399348 2019-01-16 mammals
197 southern two-toed sloth (US054 2019 Broad) Choloepus didactylus GCA_004027855.1_ChoDid_v1_BIUU SAMN07678073 PRJNA399383 2019-01-16 mammals
198 southern white rhinoceros (SDZICR_KB13650 2012 genbank) Ceratotherium simum simum GCA_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31 mammals
199 soybean (US DOE JGI-PGF v2.0 2010) Glycine max GCF_000004515.4_Glycine_max_v2.0 SAMN00002965 PRJNA19861 2015-11-04 plants
200 soybean (US DOE JGI-PGF v2.1 2018) Glycine max GCF_000004515.5_Glycine_max_v2.1 SAMN00002965 PRJNA19861 2018-07-24 plants
201 speckled wood butterfly (genbank 2021) Pararge aegeria GCA_905163445.1_ilParAegt1.1 SAMEA7532732 PRJEB42039 2021-01-28 invertebrate
202 sponges A.queenslandica (v1.0 2010 JGI-PGF) Amphimedon queenslandica GCF_000090795.1_v1.0 SAMN02743868 PRJNA39517 2010-05-28 invertebrate
203 Sumatran orangutan (2018 genbank) Pongo abelii GCA_002880775.3_Susie_PABv2 SAMN06275555 PRJNA369439 2018-01-19 primates
204 Swainson's thrush (v1 2019 VGP) Catharus ustulatus GCF_009819885.1_bCatUst1.pri SAMN12618602 PRJNA561933 2019-12-31 birds
205 Tasmanian devil Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 SAMN02953780 PRJNA51853 2011-02-17 mammals
206 thirteen-lined ground squirrel (2011) Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 SAMN00210855 PRJNA61725 2011-11-29 mammals
207 thorny skate (CabotCenter1 v1 2020 genbank VGP) Amblyraja radiata GCA_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
208 thorny skate (CabotCenter1 v1 2020 refseq VGP) Amblyraja radiata GCF_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
209 tiger tail seahorse (QL1 v1 2016) Hippocampus comes GCF_001891065.1_H_comes_QL1_v1 SAMN04531611 PRJNA314292 2016-12-08 fish
210 tomato (v3.0 Heinz 1706 2018) Solanum lycopersicum GCF_000188115.4_SL3.0 SAMN02981290 PRJNA119 2018-04-18 plants
211 Ugandan red Colobus (RC106 v1 2017) Piliocolobus tephrosceles GCA_002776525.1_ASM277652v1 SAMN07735529 PRJNA413051 2017-11-16 primates
212 Ugandan red Colobus (RC106 v2 2018) Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 SAMN07735529 PRJNA413051 2018-09-11 primates
213 Ugandan red Colobus (RC106 v3 2019) Piliocolobus tephrosceles GCF_002776525.3_ASM277652v3 SAMN07735529 PRJNA413051 2019-12-12 primates
214 Upper Galilee mountains blind mole rat (#2095 2014 genbank) Nannospalax galili GCA_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05 mammals
215 valley oak (v3.0 2019) Quercus lobata GCF_001633185.1_ValleyOak3.0 SAMN10584531 PRJNA308314 2019-01-11 plants
216 water buffalo (Mediterranean 2013) Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0 SAMN02191888 PRJNA207334 2013-09-30 mammals
217 Weddell seal (WS11-02 2013 genbank) Leptonychotes weddellii GCA_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29 mammals
218 western European hedgehog (2012 genbank) Erinaceus europaeus GCA_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19 mammals
219 western lowland gorilla (Susie 2016) Gorilla gorilla gorilla GCA_900006655.3_Susie3 SAMEA3541598 PRJEB10880 2016-12-22 primates
220 western painted turtle (v303 2014) Chrysemys picta bellii GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 SAMN02713681 PRJNA78657 2014-03-31 vertebrate
221 western predatory mite (v1.0 2012) Galendromus occidentalis GCF_000255335.1_Mocc_1.0 SAMN00849407 PRJNA62309 2012-03-27 invertebrate
222 wheat stem sawfly (v1 2014) Cephus cinctus GCF_000341935.1_Ccin1 SAMN02905554 PRJNA168335 2014-07-09 invertebrate
223 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 SAMN03488028 PRJNA281425 2019-04-05 mammals
224 white leghorn X broiler chicken (leghorn haplotype v1 2021 VGP) Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-01-19 birds
225 white-tailed deer (Pink-7 2017 genbank) Odocoileus virginianus texanus GCA_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20 mammals
226 white-tufted-ear marmoset (CJ-08-46 2017) Callithrix jacchus GCA_002754865.1_ASM275486v1 SAMN07586072 PRJNA401030 2017-11-06 primates
227 white-tufted-ear marmoset (2010 Wash U) Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 SAMN02981242 PRJNA20401 2010-01-22 primates
228 white-tufted-ear marmoset (cj1700 genbank) Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 SAMN12783337 PRJNA566173 2019-11-15 primates
229 wild Bactrian camel (CB1 Naran 2013 genbank) Camelus ferus GCA_000311805.2_CB1 SAMN01910617 PRJNA76177 2013-07-30 mammals
230 wild emmer wheat (Zavitan Atlit2015 v2.0 2019) Triticum dicoccoides GCF_002162155.1_WEW_v2.0 SAMN04448013 PRJNA310175 2019-02-04 plants
231 wire-tailed manakin (2018) Pipra filicauda GCF_003945595.1_ASM394559v1 SAMN08774045 PRJNA445296 2018-12-14 birds
232 woodchuck Marmota monax GCA_901343595.1_MONAX5 SAMEA91498168 PRJEB19462 2019-09-13 mammals
233 Yangtze finless porpoise (v1 2018 genbank) Neophocaena asiaeorientalis asiaeorientalis GCA_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
234 Yangtze finless porpoise (v1 2018 refseq) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
235 Yangtze River dolphin (BGI 2013 genbank) Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31 mammals
236 yellow-bellied marmot (v1 2018) Marmota flaviventris GCF_003676075.1_ASM367607v1 SAMN10078668 PRJNA491472 2018-10-22 mammals
237 yellow-bellied marmot (SJ_83 v2.0 2019) Marmota flaviventris GCF_003676075.2_GSC_YBM_2.0 SAMN10078668 PRJNA491472 2019-05-24 mammals
238 yellow-throated sandgrouse (BGI_N339 2014 BGI) Pterocles gutturalis GCF_000699245.1_ASM69924v1 SAMN02339892 PRJNA212906 2014-06-09 birds
239 zebra finch (Black17 v1 2019 genbank VGP) Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
240 zebra finch (Black17 v1 2019 refseq VGP) Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
241 zebu cattle (Nelore 2014 genbank) Bos indicus GCA_000247795.2_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25 mammals
242 zig-zag eel (v1.1 2018 VGP) Mastacembelus armatus GCF_900324485.1_fMasArm1.1 SAMEA104026378 PRJEB25769 2018-03-31 fish

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 57 assemblies assembly stats track stats
Mammals 348 assemblies assembly stats track stats
Birds 171 assemblies assembly stats track stats
Fishes 179 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats