Legacy Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of legacy only.

How to view the assembly of interest

The links to the genome browser in the table below will attach that one specific assembly to the genome browser. Use the links in the column labeled common name and view in browser to view that assembly in the genome browser.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Cite reference: To reference these resources in publications, please credit:

Clawson, H., Lee, B.T., Raney, B.J. et al. "GenArk: towards a million UCSC genome browsers.
Genome Biol 24, 217 (2023). https://doi.org/10.1186/s13059-023-03057-x

Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in UCSC browser
[IGV browser]
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
clade
1 aardvark (BS58 2019 Broad)[IGV] Orycteropus afer GCA_004365145.1_OryAfe_v1_BIUU SAMN07678101 PRJNA399461 2019-03-22 mammals
2 Aeolian wall lizard (La Canna islet primary hap 2022 genbank)[IGV] Podarcis raffonei GCA_027172205.1_rPodRaf1.pri SAMN28455423 PRJNA839511 2022-12-27 vertebrate
3 African clawed frog (2016)[IGV] Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 SAMN04518361 PRJNA313213 2016-08-09 vertebrate
4 African grass rat (paternal X 2020)[IGV] Arvicanthis niloticus GCA_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27 mammals
5 African savanna elephant (2009 genbank)[IGV] Loxodonta africana GCA_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15 mammals
6 alkali bee (v1.2 Touchet_males 2018)[IGV] Nomia melanderi GCF_003710045.1_USU_Nmel_1.2 SAMN10185933 PRJNA494873 2018-11-02 invertebrate
7 alpaca (2015 BGI)[IGV] Vicugna pacos huacaya GCA_000767525.1_Vi_pacos_V1.0 SAMN02996813 PRJNA233565 2015-02-11 mammals
8 alpaca (v3.1 Carlotta AHFN-0088 2019 Deakin U)[IGV] Vicugna pacos GCF_000164845.3_VicPac3.1 SAMN01096418 PRJNA544883 2019-07-15 mammals
9 Alpine marmot (2015)[IGV] Marmota marmota marmota GCF_001458135.1_marMar2.1 SAMEA3214822 PRJEB8272 2015-11-20 mammals
10 American alligator (scaffold assembly 2023 genbank)[IGV] Alligator mississippiensis GCA_030867065.1_rAllMis1 SAMN37045233 PRJNA1006700 2023-08-22 vertebrate
11 American alligator (chrom assembly 2023 genbank)[IGV] Alligator mississippiensis GCA_030867095.1_rAllMis1 SAMN37045233 PRJNA1006701 2023-08-24 vertebrate
12 American beaver (US014 2019 Broad)[IGV] Castor canadensis GCA_004027675.1_CasCan_v1_BIUU SAMN07678136 PRJNA399431 2019-01-16 mammals
13 American bison (2014 genbank)[IGV] Bison bison bison GCA_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08 mammals
14 American pika 3.0 (2012 Broad genbank)[IGV] Ochotona princeps GCA_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27 mammals
15 amphipods H.azteca (HAZT.00-mixed v2.0 2016)[IGV] Hyalella azteca GCF_000764305.1_Hazt_2.0 SAMN02978968 PRJNA243935 2016-07-20 invertebrate
16 Amur tiger (TaeGuk 2013 genbank)[IGV] Panthera tigris altaica GCA_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06 mammals
17 Anna's hummingbird (BGI_N300 2019 genbank)[IGV] Calypte anna GCA_003957555.2_bCalAnn1_v1.p SAMN02265252 PRJNA489139 2019-05-16 birds
18 ant C.costatus (v1 MS0001 2016)[IGV] Cyphomyrmex costatus GCF_001594065.1_Ccosl1.0 SAMN03982885 PRJNA292630 2016-03-25 invertebrate
19 ant N.fulva (TAMU-Nful-2015 v1.0 2019)[IGV] Nylanderia fulva GCF_005281655.1_TAMU_Nfulva_1.0 SAMN10848236 PRJNA517949 2019-05-13 invertebrate
20 ant T.cornetzi (Tcor2-1 v1.0 2016 BGI)[IGV] Trachymyrmex cornetzi GCF_001594075.1_Tcor1.0 SAMN03982882 PRJNA292627 2016-03-25 invertebrate
21 apple (Golden Delicious X9273 #13 2017 genbank)[IGV] Malus domestica GCA_002114115.1_ASM211411v1 SAMN05603590 PRJNA339703 2017-05-03 plants
22 Arabian camel (2014 genbank)[IGV] Camelus dromedarius GCA_000767585.1_PRJNA234474_Ca_dromedarius_V1.0 SAMN03000646 PRJNA234474 2014-10-21 mammals
23 Arctic fox (US066 2019 Broad)[IGV] Vulpes lagopus GCA_004023825.1_VulLag_v1_BIUU SAMN07678118 PRJNA399424 2019-01-15 mammals
24 Asian corn borer (v1 ACB-3 2019)[IGV] Ostrinia furnacalis GCF_004193835.1_ASM419383v1 SAMN08335163 PRJNA429307 2019-02-13 invertebrate
25 Asian corn borer (v2 ACB-3 2019)[IGV] Ostrinia furnacalis GCF_004193835.2_ASM419383v2 SAMN08335163 PRJNA429307 2019-02-13 invertebrate
26 Asiatic tapir (BS100 BIUU 2019)[IGV] Tapirus indicus GCA_004024905.1_TapInd_v1_BIUU SAMN07678113 PRJNA399421 2019-01-15 mammals
27 ascomycetes A.fischeri (v3 NRRL 181 2006)[IGV] Aspergillus fischeri NRRL 181 GCF_000149645.2_ASM14964v3 SAMN02953637 PRJNA15672 2006-12-14 fungi
28 ascomycetes A.niger CBS 513.88 (v3 2007)[IGV] Aspergillus niger CBS 513.88 GCF_000002855.3_ASM285v2 SAMEA3283178 PRJNA19275 2007-04-11 fungi
29 ascomycetes A.rabiei (Mel4 2019)[IGV] Ascochyta rabiei GCF_004011695.1_Arabiei_Me14 SAMN10613128 PRJNA510692 2019-01-11 fungi
30 ascomycetes B.dermatitidis (ER-3 2009 genbank)[IGV] Blastomyces dermatitidis ER-3 GCA_000003525.2_BD_ER3_V1 SAMN02953741 PRJNA29171 2009-02-24 fungi
31 ascomycetes S.macrospora (v2 k-hell 2012)[IGV] Sordaria macrospora k-hell GCF_000182805.2_ASM18280v2 SAMEA3138314 PRJNA39253 2012-03-13 fungi
32 ascomycetes S.schenckii (1099-18 2015 genbank)[IGV] Sporothrix schenckii 1099-18 GCA_000961545.1_S_schenckii_v1 SAMN03199974 PRJNA218070 2015-03-24 fungi
33 ass (Maral har 2015 genbank)[IGV] Equus asinus GCA_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02 mammals
34 Atlantic halibut (2019 genbank)[IGV] Hippoglossus hippoglossus GCA_009819705.1_fHipHip1.pri SAMN12629501 PRJNA562001 2019-12-31 fish
35 Atlantic herring (v1)[IGV] Clupea harengus GCF_900700415.1_Ch_v2.0.2 SAMEA5339254 PRJEB31270 2019-04-16 fish
36 Atlantic salmon (genbank 2021)[IGV] Salmo salar GCA_905237065.2_Ssal_v3.1 SAMEA8062739 PRJEB43080 2021-04-21 fish
37 Atlantic stingray (hap1 2023 genbank)[IGV] Hypanus sabinus GCA_030144855.1_sHypSab1.hap1 SAMN32745077 PRJNA924072 2023-06-05 vertebrate
38 B.malayi (v3 2008 agent of lymphatic filariasis)[IGV] Brugia malayi GCF_000002995.3_ASM299v2 SAMN02953652 PRJNA10729 2008-03-04 invertebrate
39 Bactrian camel (Alxa 2014 genbank)[IGV] Camelus bactrianus GCA_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23 mammals
40 banded archerfish (primary hap 2021 genbank)[IGV] Toxotes jaculatrix GCA_017976425.1_fToxJac2.pri SAMN18445299 PRJNA717046 2021-04-15 fish
41 barn owl BGI_N341 (2014)[IGV] Tyto alba GCF_000687205.1_ASM68720v1 SAMN02339894 PRJNA212909 2014-05-08 birds
42 barn owl (2020)[IGV] Tyto alba alba GCF_902150015.1_genome_assembly_l500 SAMEA5733888 PRJEB33158 2020-02-10 birds
43 barn swallow (bHirRus1 v2 primary hap genbank 2021)[IGV] Hirundo rustica GCA_015227805.2_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02 birds
44 barn swallow (bHirRus1 v2 primary hap refseq 2021)[IGV] Hirundo rustica GCF_015227805.1_bHirRus1.pri.v2 SAMN14675488 PRJNA636192 2021-03-02 birds
45 Barn swallow (bHirRus1 v3 primary hap 2021 genbank)[IGV] Hirundo rustica GCA_015227805.3_bHirRus1.pri.v3 SAMN14675488 PRJNA636192 2021-11-30 birds
46 basidiomycetes A.bisporus (H97 2012)[IGV] Agaricus bisporus var. bisporus H97 GCF_000300575.1_Agabi_varbisH97_2 SAMN02744070 PRJNA61005 2012-11-30 fungi
47 basidiomycetes S.commune (v1 H4-8 2010)[IGV] Schizophyllum commune H4-8 GCF_000143185.1_v1.0 SAMN02194201 PRJNA32757 2010-07-02 fungi
48 ascomycetes Z.tritici (IPO323 2011 genbank)[IGV] Zymoseptoria tritici IPO323 GCA_000219625.1_MYCGR_v2.0 SAMN02746078 PRJNA19047 2011-07-06 fungi
49 barramundi perch (ASB-BC8 2016)[IGV] Lates calcarifer GCF_001640805.1_ASM164080v1 SAMN04026617 PRJNA294489 2016-05-09 fish
50 bee C.calcarata (v1 Rehan_Ccalc_2016 2016)[IGV] Ceratina calcarata GCF_001652005.1_ASM165200v1 SAMN04252592 PRJNA299559 2016-05-25 invertebrate
51 bee E.mexicana (v1 0111107269 2016)[IGV] Eufriesea mexicana GCF_001483705.1_ASM148370v1 SAMN03801430 PRJNA279814 2016-05-09 invertebrate
52 beet (2015)[IGV] Beta vulgaris subsp. vulgaris GCF_000511025.2_RefBeet-1.2.2 SAMN02182557 PRJNA41497 2015-07-07 plants
53 beluga whale (GAN/ISIS: 26980492/103006 v2 2017)[IGV] Delphinapterus leucas GCA_002288925.2_ASM228892v2 SAMN06216270 PRJNA360851 2017-09-11 mammals
54 black cottonwood (v3 Nisqually-1 2018)[IGV] Populus trichocarpa GCF_000002775.4_Pop_tri_v3 SAMN02953657 PRJNA10772 2018-01-24 plants
55 black-legged kittiwake (bRisTri1.patW 2023 genbank)[IGV] Rissa tridactyla GCA_028500815.1_bRisTri1.patW.cur.20221130 SAMN32104255 PRJNA909853 2023-02-09 birds
56 black-legged tick (U.Maryland v1 2021)[IGV] Ixodes scapularis GCF_016920785.1_Ixodes_scapularus_ComboLowHiFi SAMN16793453 PRJNA678334 2021-02-23 invertebrate
57 black rhinoceros (mBicDic1 primary hap genbank 2021)[IGV] Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10 mammals
58 black snub-nosed monkey (Rb0 v1 refseq 2016)[IGV] Rhinopithecus bieti GCF_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
59 black snub-nosed monkey (Rb0 v1 genbank 2016)[IGV] Rhinopithecus bieti GCA_001698545.1_ASM169854v1 SAMN02786331 PRJNA315476 2016-08-03 primates
60 black swan (v1 Queensland, Australia AKBS03 2020)[IGV] Cygnus atratus GCF_013377495.1_Cygnus_atratus_primary_v1.0 SAMN15332785 PRJNA640810 2020-06-30 birds
61 black tiger shrimp (v1 SGIC_2016 2020)[IGV] Penaeus monodon GCF_015228065.1_NSTDA_Pmon_1 SAMN14330694 PRJNA611030 2020-11-05 invertebrate
62 Blainville's beaked whale (mMesDen1 primary hap 2022 genbank)[IGV] Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype SAMN29828597 PRJNA873668 2022-09-19 mammals
63 blue whale (JJ_BM4_2016_0621 v2 2020)[IGV] Balaenoptera musculus GCA_009873245.2_mBalMus1.v2 SAMN12287136 PRJNA554522 2020-02-03 mammals
64 blunt-snouted clingfish (v1 2019 genbank)[IGV] Gouania willdenowi GCA_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
65 blunt-snouted clingfish (v1 2019 refseq)[IGV] Gouania willdenowi GCF_900634775.1_fGouWil2.1 SAMEA104026382 PRJEB30359 2019-02-06 fish
66 Bolivian squirrel monkey (3227 Broad 2011)[IGV] Saimiri boliviensis boliviensis GCF_000235385.1_SaiBol1.0 SAMN02981369 PRJNA67945 2011-11-17 primates
67 Bolivian squirrel monkey (100643 v2.0 BCM 2021)[IGV] Saimiri boliviensis boliviensis GCF_016699345.1_BCM_Sbol_2.0 SAMN16846876 PRJNA679316 2021-01-12 primates
68 Bornean orangutan (v1 AG05252 alternate hap 2023)[IGV] Pongo pygmaeus GCA_028885525.1_NHGRI_mPonPyg2-v1.1-hic.freeze_alt SAMN10521809 PRJNA916740 2023-02-28 primates
69 Bornean orangutan (v1 AG05252 primary hap 2023)[IGV] Pongo pygmaeus GCF_028885625.1_NHGRI_mPonPyg2-v1.1-hic.freeze_pri SAMN10521809 PRJNA916742 2023-02-28 primates
70 boutu (BS63 2019)[IGV] Inia geoffrensis GCA_004363515.1_IniGeo_v1_BIUU SAMN07678125 PRJNA399465 2019-03-22 mammals
71 Brazilian free-tailed bat (US034 2019)[IGV] Tadarida brasiliensis GCA_004025005.1_TadBra_v1_BIUU SAMN07678131 PRJNA399430 2019-01-15 mammals
72 brown anole (Geneva1000 2022 genbank)[IGV] Anolis sagrei ordinatus GCA_025583915.1_AnoSag2.1 SAMN29589363 PRJNA783271 2022-10-05 vertebrate
73 brown argus (genbank 2021)[IGV] Aricia agestis GCA_905147365.1_ilAriAges1.1 SAMEA7523300 PRJEB41901 2021-01-28 invertebrate
74 brown bear (GAN/ISIS:MIG12 v1 2018)[IGV] Ursus arctos horribilis GCF_003584765.1_ASM358476v1 SAMN09907428 PRJNA487641 2018-09-20 mammals
75 brown bear (v1.0 2022 WashU)[IGV] Ursus arctos GCF_023065955.1_UrsArc1.0 SAMN25977855 PRJNA807323 2022-04-20 mammals
76 brown dog tick (v1 Rsan-2018 2020)[IGV] Rhipicephalus sanguineus GCF_013339695.1_ASM1333969v1 SAMN14941062 PRJNA633311 2020-06-16 invertebrate
77 brown headed cowbird (v1.0 BHLD 08-10-18 2020)[IGV] Molothrus ater GCF_012460135.1_BPBGC_Mater_1.0 SAMN14074414 PRJNA606972 2020-04-20 birds
78 brown planthopper (BPH 2020 genbank)[IGV] Nilaparvata lugens GCA_014356525.1_ASM1435652v1 SAMN13382557 PRJNA591478 2020-09-09 invertebrate
79 budgerigar (maternal Z 2020 genbank)[IGV] Melopsittacus undulatus GCA_012275295.1_bMelUnd1.mat.Z SAMN12623090 PRJNA612327 2020-04-13 birds
80 butterfly L.sinapis (2021 genbank)[IGV] Leptidea sinapis GCA_905404315.1_ilLepSina1.1 SAMEA7523467 PRJEB43998 2021-04-15 invertebrate
81 butterfly P.napi (v1.1 genbank 2021)[IGV] Pieris napi GCA_905475465.1_ilPieNapi1.1 SAMEA7523287 PRJEB44052 2021-04-15 invertebrate
82 cabbage white (genbank 2021)[IGV] Pieris rapae GCA_905147795.1_ilPieRapa1.1 SAMEA7523164 PRJEB41952 2021-01-28 invertebrate
83 California condor (v1 813 2021 genbank)[IGV] Gymnogyps californianus GCA_018139145.1_ASM1813914v1 SAMN18477433 PRJNA718609 2021-04-25 birds
84 California sea lion (BS06 2019 Broad)[IGV] Zalophus californianus GCA_004024565.1_ZalCal_v1_BIUU SAMN07678053 PRJNA399369 2019-01-15 mammals
85 California sea lion (v1 2019)[IGV] Zalophus californianus GCA_009762305.1_mZalCal1.pri SAMN12368149 PRJNA559673 2019-12-18 mammals
86 Canada lynx (LIC74 v1 2019)[IGV] Lynx canadensis GCF_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 2019-07-26 mammals
87 Cape golden mole (BS56 2019 Broad)[IGV] Chrysochloris asiatica GCA_004027935.1_ChrAsi_v1_BIUU SAMN07678135 PRJNA399474 2019-01-16 mammals
88 capsicum (Zunla-1 2015 genbank)[IGV] Capsicum annuum GCA_000710875.1_Pepper_Zunla_1_Ref_v1.0 SAMN01906946 PRJNA186921 2015-03-11 plants
89 carmine bee-eater (2014 BGI)[IGV] Merops nubicus GCF_000691845.1_ASM69184v1 SAMN02338310 PRJNA212898 2014-05-16 birds
90 cassava (v6 AM560-2 2016 DOE)[IGV] Manihot esculenta GCF_001659605.1_Manihot_esculenta_v6 SAMN04116956 PRJNA234389 2016-06-10 plants
91 cattle (Hereford 2015)[IGV] Bos taurus GCA_000003205.6_Btau_5.0.1 SAMN02898106 PRJNA12555 2015-11-19 mammals
92 cattle (Hereford L1 Dominette 01449 42190680 v1.2 2018 USDA)[IGV] Bos taurus GCF_002263795.1_ARS-UCD1.2 SAMN03145444 PRJNA391427 2018-04-11 mammals
93 cattle (Hereford L1 Dominette 01449 42190680 v1.3 2018 USDA)[IGV] Bos taurus GCF_002263795.2_ARS-UCD1.3 SAMN03145444 PRJNA391427 2018-04-11 mammals
94 Chacoan peccary (BS18 v1 2019 Broad)[IGV] Catagonus wagneri GCA_004024745.1_CatWag_v1_BIUU SAMN07678067 PRJNA399378 2019-01-15 mammals
95 channel bull blenny (2019 genbank)[IGV] Cottoperca gobio GCA_900634415.1_fCotGob3.1 SAMEA104242975 PRJEB30248 2019-02-06 fish
96 channel catfish (USDA103 v1 2016)[IGV] Ictalurus punctatus GCF_001660625.1_IpCoco_1.2 SAMN03486842 PRJNA281269 2016-06-21 fish
97 channel catfish (USDA103 v1.2 2019)[IGV] Ictalurus punctatus GCF_001660625.2_IpCoco_1.2 SAMN03486842 PRJNA281269 2019-01-25 fish
98 cheetah (AJU 981 2015)[IGV] Acinonyx jubatus GCA_001443585.1_aciJub1 SAMN04127588 PRJNA297632 2015-11-13 mammals
99 chimney swift (M959 v1.0 2014)[IGV] Chaetura pelagica GCF_000747805.1_ChaPel_1.0 SAMN03018471 PRJNA210808 2014-09-04 birds
100 chimpanzee (Clint C0471 2018 genbank)[IGV] Pan troglodytes GCA_002880755.3_Clint_PTRv2 SAMN06272697 PRJNA369439 2018-01-19 primates
101 chimpanzee (v1 AG18354 alternate hap 2023)[IGV] Pan troglodytes GCA_028858805.1_NHGRI_mPanTro3-v1.1-hic.freeze_alt SAMN30216104 PRJNA916737 2023-02-27 primates
102 chimpanzee (v1 AG18354 primary hap 2023)[IGV] Pan troglodytes GCF_028858775.1_NHGRI_mPanTro3-v1.1-hic.freeze_pri SAMN30216104 PRJNA916736 2023-02-27 primates
103 China rose (Old Blush v1 2018)[IGV] Rosa chinensis GCF_002994745.1_RchiOBHm-V2 SAMN07737764 PRJNA413292 2018-03-13 plants
104 Chinese hamster (17A/GY CHO 2018)[IGV] Cricetulus griseus GCF_003668045.1_CriGri-PICR SAMN07140313 PRJNA389969 2018-10-21 mammals
105 Chinook salmon (v2 Ot180627B 2021 male genbank)[IGV] Oncorhynchus tshawytscha GCA_018296145.1_Otsh_v2.0 SAMN17219827 PRJNA416144 2021-05-07 fish
106 chub mackerel (primary hap 2022 genbank)[IGV] Scomber japonicus GCA_027409825.1_fScoJap1.pri SAMN32224830 PRJNA912108 2022-12-28 fish
107 chuck-will's-widow (BGI_N321 v1 2014)[IGV] Antrostomus carolinensis GCF_000700745.1_ASM70074v1 SAMN02318612 PRJNA212888 2014-06-10 birds
108 climbing perch (v1.1 2018 refseq)[IGV] Anabas testudineus GCF_900324465.1_fAnaTes1.1 SAMEA104026376 PRJEB25768 2018-03-31 fish
109 climbing perch (v1.2 2018 genbank)[IGV] Anabas testudineus GCA_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
110 climbing perch (v1.2 2018 refseq)[IGV] Anabas testudineus GCF_900324465.2_fAnaTes1.2 SAMEA104026376 PRJEB25768 2018-12-19 fish
111 clouded leopard (mNeoNeb1 primary hap 2023 genbank)[IGV] Neofelis nebulosa GCA_028018385.1_mNeoNeb1.pri SAMN31801981 PRJNA915742 2023-01-31 mammals
112 clouded yellow (genbank 2021)[IGV] Colias croceus GCA_905220415.1_ilColCroc2.1 SAMEA7523360 PRJEB42878 2021-02-16 invertebrate
113 coho salmon (150728-3 2017)[IGV] Oncorhynchus kisutch GCF_002021735.1_Okis_V1 SAMN05991263 PRJNA352719 2017-03-06 fish
114 common bottlenose dolphin (maternal Y genbank 2020)[IGV] Tursiops truncatus GCA_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27 mammals
115 common bottlenose dolphin (MMES2002162SC 2016 genbank)[IGV] Tursiops truncatus GCA_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28 mammals
116 common brushtail (genbank 2020)[IGV] Trichosurus vulpecula GCA_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10 mammals
117 common carp (2014)[IGV] Cyprinus carpio GCF_000951615.1_common_carp_genome SAMEA2757102 PRJEB7241 2014-11-03 fish
118 common cuckoo (bCucCan1 primary hap 2021 genbank)[IGV] Cuculus canorus GCA_017976375.1_bCucCan1.pri SAMN12629508 PRJNA562015 2021-04-15 birds
119 common cuckoo (BGI 2014)[IGV] Cuculus canorus GCF_000709325.1_ASM70932v1 SAMN02298149 PRJNA212870 2014-06-17 birds
120 common house spider (v2 Geottingen 2017)[IGV] Parasteatoda tepidariorum GCF_000365465.2_Ptep_2.0 SAMN02364452 PRJNA167405 2017-04-14 invertebrate
121 common house spider (v3 Goettingen 2019 genbank)[IGV] Parasteatoda tepidariorum GCA_000365465.3_Ptep_3.0 SAMN02364452 PRJNA167405 2019-06-14 invertebrate
122 common limpet (v1 primary hap 2022)[IGV] Patella vulgata GCF_932274485.1_xgPatVulg1.1 SAMEA7536243 PRJEB51188 2022-03-10 invertebrate
123 common sole (primary hap 2023 genbank)[IGV] Solea solea GCA_958295425.1_fSolSol10.1 SAMEA10984647 PRJEB63669 2023-07-06 fish
124 common swift (bApuApu2 2021 genbank)[IGV] Apus apus GCA_020740795.1_bApuApu2.pri.cur SAMN22785356 PRJNA776336 2021-11-04 birds
125 common vampire bat (HL8 primary hap 2022 genbank)[IGV] Desmodus rotundus GCA_022682495.1_HLdesRot8A SAMN24116476 PRJNA789528 2022-03-24 mammals
126 common vampire bat (v2 DRU21DN04 2018 genbank)[IGV] Desmodus rotundus GCA_002940915.2_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
127 common vampire bat (v2 DRU21DN04 2018 refseq)[IGV] Desmodus rotundus GCF_002940915.1_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23 mammals
128 Coquerel's sifaka 6110/Marcella (2015 genbank)[IGV] Propithecus coquereli GCA_000956105.1_Pcoq_1.0 SAMN03121823 PRJNA251429 2015-03-23 primates
129 cork oak (v1 HL8 2018)[IGV] Quercus suber GCF_002906115.1_CorkOak1.0 SAMN07312269 PRJNA392919 2018-01-29 plants
130 cotton bollworm (Harm_GR_Male_#8 2017 genbank)[IGV] Helicoverpa armigera GCA_002156985.1_Harm_1.0 SAMN06608624 PRJNA378437 2017-05-22 invertebrate
131 cowpea (IT97K-499-35 v1 2019)[IGV] Vigna unguiculata GCF_004118075.1_ASM411807v1 SAMN06674009 PRJNA381312 2019-01-30 plants
132 crab-eating macaque WashU 2013 genbank[IGV] Macaca fascicularis GCA_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
133 crab-eating macaque WashU 2013 refseq[IGV] Macaca fascicularis GCF_000364345.1_Macaca_fascicularis_5.0 SAMN00811240 PRJNA20409 2013-06-12 primates
134 crucian carp (primary hap 2023 genbank)[IGV] Carassius carassius GCA_963082965.1_fCarCar2.1 SAMEA11296534 PRJEB64837 2023-08-09 fish
135 crustacean D.carinata (v1 CSIRO-1 2022)[IGV] Daphnia carinata GCF_022539665.1_CSIRO_AGI_Dcar_v0.2 SAMN25047845 PRJNA798159 2022-12-14 invertebrate
136 crustacean D.magna (SK Sungkyunkwan U. 2019 genbank)[IGV] Daphnia magna GCA_003990815.1_ASM399081v1 SAMN10036042 PRJNA490418 2019-01-07 invertebrate
137 dark-edged splitfin (DD_20200921_A 2022 genbank)[IGV] Girardinichthys multiradiatus GCA_021462225.2_DD_fGirMul_XY1 SAMN22242658 PRJNA768329 2022-02-24 fish
138 Daubenton's bat (primary hap 2023 genbank)[IGV] Myotis daubentonii GCA_963259705.1_mMyoDau2.1 SAMEA9921455 PRJEB65246 2023-08-20 mammals
139 degu (3935 2012 genbank)[IGV] Octodon degus GCA_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01 mammals
140 denticle herring (v1 2019)[IGV] Denticeps clupeoides GCF_900700375.1_fDenClu1.1 SAMEA104129917 PRJEB31545 2019-03-16 fish
141 diamondback terrapin (hap1 2023 genbank)[IGV] Malaclemys terrapin pileata GCA_027887155.1_rMalTer1.hap1 SAMN31394215 PRJNA895896 2023-01-18 vertebrate
142 dog (BS72 2019 Broad)[IGV] Canis lupus familiaris GCA_004027395.1_CanFam_VD_v1_BIUU SAMN07678141 PRJNA399441 2019-01-16 mammals
143 domestic ferret (Sable ID 1420 FGSC 2011)[IGV] Mustela putorius furo GCF_000215625.1_MusPutFur1.0 SAMN00149631 PRJNA59869 2011-06-02 mammals
144 domestic guinea pig (2N 2008 genbank)[IGV] Cavia porcellus GCA_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03 mammals
145 domestic silkworm (genbank 2020)[IGV] Bombyx mori GCA_014905235.2_Bmori_2016v1.0 SAMD00054089 PRJDB4947 2020-10-13 invertebrate
146 domesticated barley (H.vulgare 2021 genbank)[IGV] Hordeum vulgare subsp. vulgare GCA_904849725.1_MorexV3_pseudomolecules_assembly SAMEA7384724 PRJEB40589 2021-04-01 plants
147 downy woodpecker (BGI 2014)[IGV] Dryobates pubescens GCF_000699005.1_ASM69900v1 SAMN02314405 PRJNA212874 2014-06-06 birds
148 downy woodpecker (bDryPub1 primary hap 2020)[IGV] Dryobates pubescens GCA_014839835.1_bDryPub1.pri SAMN12629497 PRJNA561991 2020-10-02 birds
149 E. coli (K-12 BW25113 2014 genbank)[IGV] Escherichia coli BW25113 GCA_000750555.1_ASM75055v1 SAMN03013572 PRJNA257976 2014-09-09 bacteria
150 East African water lily (v1 Beijing-Zhang1983 2019)[IGV] Nymphaea colorata GCF_008831285.1_ASM883128v1 SAMN12766378 PRJNA565347 2019-10-07 plants
151 eastern European house mouse (PWK_PhJ v1 2016)[IGV] Mus musculus musculus GCA_001624775.1_PWK_PhJ_v1 SAMN04489829 PRJNA310854 2016-04-26 mammals
152 eastern happy (v2 2018)[IGV] Astatotilapia calliptera GCF_900246225.1_fAstCal1.2 SAMEA104026430 PRJEB24325 2018-05-30 fish
153 Egyptian rousette (US006 2019 Broad)[IGV] Rousettus aegyptiacus GCA_004024865.1_RouAeg_v1_BIUU SAMN07678121 PRJNA399428 2019-01-15 mammals
154 Egyptian rousette (v1 2020 genbank)[IGV] Rousettus aegyptiacus GCA_014176215.1_mRouAeg1.p SAMN14734550 PRJNA628585 2020-08-07 mammals
155 elephant shark (2013)[IGV] Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 SAMN00000800 PRJNA18361 2013-12-11 vertebrate
156 emu (v1 ZJU1.0 2020)[IGV] Dromaius novaehollandiae GCA_016128335.1_ZJU1.0 SAMN15183959 PRJNA638233 2020-12-20 birds
157 epaulette shark (2021 genbank)[IGV] Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. SAMN22550098 PRJNA774310 2021-11-05 vertebrate
158 eudicots lettuce (Salinas v7 2020)[IGV] Lactuca sativa GCF_002870075.2_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2020-04-13 plants
159 Euphrates poplar (v1 2014)[IGV] Populus euphratica GCF_000495115.1_PopEup_1.0 SAMN02981499 PRJNA178692 2014-08-12 plants
160 Eurasian badger (v3.1 2021)[IGV] Meles meles GCF_922984935.1_mMelMel3.1_paternal_haplotype SAMEA7524400 PRJEB49353 2021-12-19 mammals
161 Eurasian red squirrel (v1.1 2019)[IGV] Sciurus vulgaris GCA_902686455.1_mSciVul1.1 SAMEA994733 PRJEB35380 2019-11-26 mammals
162 Eurasian water vole (v1 2020)[IGV] Arvicola amphibius GCF_903992535.1_mArvAmp1.1 SAMEA994740 PRJEB39550 2020-08-06 mammals
163 European conger (primary hap 2023 genbank)[IGV] Conger conger GCA_963514075.1_fConCon1.1 SAMEA12219431 PRJEB66426 2023-09-29 fish
164 European mink (primary hap 2023 genbank)[IGV] Mustela lutreola GCA_030435805.1_mMusLut2.pri SAMN35784236 PRJNA984926 2023-07-13 mammals
165 European peacock (2021 genbank)[IGV] Nymphalis io GCA_905147045.1_ilAglIoxx1.1 SAMEA7523149 PRJEB41894 2021-01-28 invertebrate
166 European plaice (primary hap 2022 genbank)[IGV] Pleuronectes platessa GCA_947347685.1_fPlePla1.1 SAMEA13853390 PRJEB57577 2022-11-29 fish
167 European snow vole (primary hap 2023 genbank)[IGV] Chionomys nivalis GCA_950005125.1_mChiNiv1.1 SAMEA13217622 PRJEB61598 2023-05-01 mammals
168 European turtle dove (v1.1 alternate hap 2019)[IGV] Streptopelia turtur GCA_901699165.1_bStrTur1.1_alternate_haplotype SAMEA994735 PRJEB32725 2019-06-02 birds
169 European turtle dove (v1.1 primary hap 2019)[IGV] Streptopelia turtur GCA_901699155.1_bStrTur1.1 SAMEA994735 PRJEB32724 2019-06-05 birds
170 European woodmouse (2022 genbank)[IGV] Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28 mammals
171 fall armyworm (Faw-zju 2020 genbank)[IGV] Spodoptera frugiperda GCA_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
172 fall armyworm (Faw-zju v1.0 refseq 2020)[IGV] Spodoptera frugiperda GCF_011064685.1_ZJU_Sfru_1.0 SAMN13324450 PRJNA590312 2020-03-05 invertebrate
173 flier cichlid (MPI-CPG 2019 genbank)[IGV] Archocentrus centrarchus GCA_007364275.2_fArcCen1 SAMN09948522 PRJNA489129 2019-08-01 fish
174 Florida manatee (Lorelei 2012 genbank)[IGV] Trichechus manatus latirostris GCA_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23 mammals
175 fly D.albomicans (v1 15112-1751.03 2019)[IGV] Drosophila albomicans GCF_009650485.1_drosAlbom15112-1751.03v1 SAMN12703415 PRJNA554139 2019-11-14 invertebrate
176 fly D.santomea (v1.0 2021)[IGV] Drosophila santomea GCF_016746245.1_Prin_Dsan_1.0 SAMN15573959 PRJNA647033 2021-01-25 invertebrate
177 fly D.sechellia (sech25 v1 2019 UC Irvine)[IGV] Drosophila sechellia GCF_004382195.1_ASM438219v1 SAMN06827992 PRJNA383250 2019-04-16 invertebrate
178 fly D.serrata (v1.0 Fors4 2017)[IGV] Drosophila serrata GCF_002093755.1_Dser1.0 SAMN06092698 PRJNA355616 2017-04-14 invertebrate
179 fly D.simulans (w501 v3.0 2021)[IGV] Drosophila simulans GCF_016746395.1_Prin_Dsim_3.0 SAMN06473875 PRJNA377886 2021-01-25 invertebrate
180 fly D.yakuba (2018)[IGV] Drosophila yakuba GCF_000005975.2_dyak_caf1 SAMN02952910 PRJNA12366 2006-06-27 invertebrate
181 fly D.yakuba (v1 2021)[IGV] Drosophila yakuba GCF_016746365.1_Prin_Dyak_Tai18E2_2.0 SAMN15573791 PRJNA647028 2021-01-25 invertebrate
182 Gaboon caecilian (v1.1 2019 genbank)[IGV] Geotrypetes seraphini GCA_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 vertebrate
183 Gaboon caecilian (v1.1 2019 refseq)[IGV] Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 SAMEA104387963 PRJEB33992 2019-08-18 vertebrate
184 giant panda (2009 BGI)[IGV] Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 SAMN00008160 PRJNA38683 2009-12-15 mammals
185 giant panda (Jingjing v1 2017)[IGV] Ailuropoda melanoleuca GCA_002007445.1_ASM200744v1 SAMN04193337 PRJNA299083 2017-02-28 mammals
186 giant panda (Jingjing v2 refseq 2020)[IGV] Ailuropoda melanoleuca GCF_002007445.1_ASM200744v2 SAMN04193337 PRJNA588422 2020-04-20 mammals
187 giant panda (Jingjing v2 genbank 2020)[IGV] Ailuropoda melanoleuca GCA_002007445.2_ASM200744v2 SAMN04193337 PRJNA588422 2020-04-20 mammals
188 gilthead seabream (v1 2019)[IGV] Sparus aurata GCF_900880675.1_fSpaAur1.1 SAMEA104384835 PRJEB31901 2019-07-30 fish
189 Glanville fritillary (genbank 2021)[IGV] Melitaea cinxia GCA_905220565.1_ilMelCinx1.1 SAMEA7523475 PRJEB42891 2021-02-16 invertebrate
190 globe artichoke (v1 2C 2018)[IGV] Cynara cardunculus var. scolymus GCF_001531365.1_CcrdV1 SAMN03402638 PRJNA238069 2018-04-17 plants
191 goat (v1 San Clemente 2016 USDA genbank)[IGV] Capra hircus GCA_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
192 goat (v1 San Clemente 2016 USDA refseq)[IGV] Capra hircus GCF_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24 mammals
193 golden eagle (v1.2 alternate hap 2019)[IGV] Aquila chrysaetos chrysaetos GCA_902153765.1_bAquChr1.2_alternate_haplotype SAMEA994725 PRJEB33298 2019-07-08 birds
194 golden eagle (v1.2 2019)[IGV] Aquila chrysaetos chrysaetos GCF_900496995.1_bAquChr1.2 SAMEA994725 PRJEB27699 2019-07-08 birds
195 golden hamster (Baylor 2013 genbank)[IGV] Mesocricetus auratus GCA_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29 mammals
196 golden snub-nosed monkey (2014 Novogene)[IGV] Rhinopithecus roxellana GCA_000769185.1_Rrox_v1 SAMN02427086 PRJNA230020 2014-10-28 primates
197 gray mouse lemur genbank[IGV] Microcebus murinus GCA_000165445.3_Mmur_3.0 SAMN06275470 PRJNA19967 2017-02-06 primates
198 gray short-tailed opossum (mMonDom1 primary hap 2023 genbank)[IGV] Monodelphis domestica GCA_027887165.1_mMonDom1.pri SAMN31801966 PRJNA915592 2023-01-18 mammals
199 great roundleaf bat (v1 ML-2016 2016 genbank)[IGV] Hipposideros armiger GCA_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06 mammals
200 great roundleaf bat (v1 ML-2016 2016 refseq)[IGV] Hipposideros armiger GCF_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06 mammals
201 greater horseshoe bat (mRhiFer1 2020)[IGV] Rhinolophus ferrumequinum GCA_014108255.1_mRhiFer1.p SAMN14734547 PRJNA628581 2020-08-13 mammals
202 greater horseshoe bat (v1 MPI-CBG 2019 genbank)[IGV] Rhinolophus ferrumequinum GCA_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
203 greater horseshoe bat (v1 MPI-CBG 2019 refseq)[IGV] Rhinolophus ferrumequinum GCF_004115265.1_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16 mammals
204 greater mouse-eared bat (2019 Broad)[IGV] Myotis myotis GCA_004026985.1_MyoMyo_v1_BIUU SAMN07678038 PRJNA399444 2019-01-16 mammals
205 greater pipefish (v1.1 2019)[IGV] Syngnathus acus GCA_901709675.1_fSynAcu1.1 SAMEA104381750 PRJEB32741 2019-05-29 fish
206 greater wax moth (Carbio01_MB 2019 genbank)[IGV] Galleria mellonella GCA_003640425.2_ASM364042v2 SAMN10148411 PRJNA494147 2019-11-06 invertebrate
207 green algae C.reinhardtii (v1 CC-503 cw92 v1 2007)[IGV] Chlamydomonas reinhardtii GCF_000002595.1_v3.0 SAMN02953692 PRJNA12260 2007-10-15 plants
208 green algae C.variabilis (NC64A 2010 genbank)[IGV] Chlorella variabilis GCA_000147415.1_v_1.0 SAMN02744065 PRJNA45853 2010-09-16 plants
209 green algae C.reinhardtii (v2 CC-503 cw92 mt+ 2018 genbank)[IGV] Chlamydomonas reinhardtii GCA_000002595.3_Chlamydomonas_reinhardtii_v5.5 SAMN02953692 PRJNA12260 2018-01-26 plants
210 green monkey 1994-021 (2014 genbank)[IGV] Chlorocebus sabaeus GCA_000409795.2_Chlorocebus_sabeus_1.1 SAMN01760484 PRJNA168621 2014-03-25 primates
211 green sea turtle (BGI 2013)[IGV] Chelonia mydas GCF_000344595.1_CheMyd_1.0 SAMN02981410 PRJNA104937 2013-03-18 vertebrate
212 green sea turtle (v1 2020)[IGV] Chelonia mydas GCF_015237465.1_rCheMyd1.pri SAMN12612360 PRJNA561941 2020-11-05 vertebrate
213 harbor porpoise (BS71 2019)[IGV] Phocoena phocoena GCA_004363495.1_PhoPho_v1_BIUU SAMN07678060 PRJNA399454 2019-03-22 mammals
214 Harpy eagle (primary hap 2022 genbank)[IGV] Harpia harpyja GCA_026419915.1_bHarHar1_primary_haplotype SAMN31530492 PRJNA896141 2022-11-27 birds
215 Hawaiian crow (2021 genbank)[IGV] Corvus hawaiiensis GCA_020740725.1_bCorHaw1.pri.cur SAMN22550278 PRJNA774314 2021-11-04 birds
216 Hawaiian monk seal (2017 Johns Hopkins U refseq)[IGV] Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
217 Hawaiian monk seal (2017 Johns Hopkins U genbank)[IGV] Neomonachus schauinslandi GCA_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20 mammals
218 hippopotamus (v2 hap2 2023 genbank)[IGV] Hippopotamus amphibius kiboko GCA_030028045.1_mHipAmp2.hap2 SAMN33342074 PRJNA936168 2023-05-18 mammals
219 Honduran yellow-shouldered bat (v2.0 Veracruz 20B 2020)[IGV] Sturnira hondurensis GCF_014824575.1_WHU_Shon_v2 SAMN12282880 PRJNA554734 2020-09-30 mammals
220 hooded crow (v2 S_Up_H32 2017)[IGV] Corvus cornix cornix GCF_000738735.2_ASM73873v2 SAMN02143031 PRJNA192205 2017-03-08 birds
221 hooded crow (v5 S_Up_H32 2021)[IGV] Corvus cornix cornix GCF_000738735.5_ASM73873v5 SAMN02143031 PRJNA192205 2021-02-04 birds
222 horse (Twilight 2007 genbank)[IGV] Equus caballus GCA_000002305.1_EquCab2.0 SAMN02953672 PRJNA18661 2007-10-29 mammals
223 house finch (bHaeMex1 primary hap 2022 genbank)[IGV] Haemorhous mexicanus GCA_027477595.1_bHaeMex1.pri SAMN28453576 PRJNA839499 2022-12-29 birds
224 house mouse (A_J v1 2016)[IGV] Mus musculus GCA_001624215.1_A_J_v1 SAMN04489813 PRJNA310854 2016-04-26 mammals
225 house mouse (AKR_J v1 2016)[IGV] Mus musculus GCA_001624295.1_AKR_J_v1 SAMN04489815 PRJNA310854 2016-04-26 mammals
226 house mouse (BALB_cJ v1 2016)[IGV] Mus musculus GCA_001632525.1_BALB_cJ_v1 SAMN04489816 PRJNA310854 2016-05-09 mammals
227 house mouse (CBA_J v1 2016)[IGV] Mus musculus GCA_001624475.1_CBA_J_v1 SAMN04489823 PRJNA310854 2016-04-26 mammals
228 house mouse (DBA_2J v1 2016)[IGV] Mus musculus GCA_001624505.1_DBA_2J_v1 SAMN04489824 PRJNA310854 2016-04-26 mammals
229 house mouse (C3H_HeJ v1 2016)[IGV] Mus musculus GCA_001632575.1_C3H_HeJ_v1 SAMN04489818 PRJNA310854 2016-05-09 mammals
230 house mouse (FVB_NJ v1 2016)[IGV] Mus musculus GCA_001624535.1_FVB_NJ_v1 SAMN04489825 PRJNA310854 2016-04-26 mammals
231 house mouse (GRCm38.p6 2017)[IGV] Mus musculus GCF_000001635.26_GRCm38.p6 n/a PRJNA20689 2017-09-15 mammals
232 house mouse (LP_J v1 2016)[IGV] Mus musculus GCA_001632615.1_LP_J_v1 SAMN04489826 PRJNA310854 2016-05-09 mammals
233 house mouse (NOD_ShiLtJ v1 2016)[IGV] Mus musculus GCA_001624675.1_NOD_ShiLtJ_v1 SAMN04489827 PRJNA310854 2016-04-26 mammals
234 house mouse (NZO_HlLtJ v1 2016)[IGV] Mus musculus GCA_001624745.1_NZO_HlLtJ_v1 SAMN04489828 PRJNA310854 2016-04-26 mammals
235 human (GRCh38.p13 2019)[IGV] Homo sapiens GCF_000001405.39_GRCh38.p13 n/a PRJNA31257 2019-02-28 primates
236 human (GRCh38.p14 2022)[IGV] Homo sapiens GCF_000001405.40_GRCh38.p14 n/a PRJNA31257 2022-02-03 primates
237 human (NA24385.mat 2022)[IGV] Homo sapiens GCA_021951015.1_HG002.mat.cur.20211005 SAMN03283347 PRJNA794175 2022-02-04 primates
238 human (NA24385.pat 2022)[IGV] Homo sapiens GCA_021950905.1_HG002.pat.cur.20211005 SAMN03283347 PRJNA794172 2022-02-04 primates
239 human (NA24385.mat 2021)[IGV] Homo sapiens GCA_018852615.1_HG002.pri.mat.f1_v2 SAMN03283347 PRJNA727431 2021-06-11 primates
240 human (NA24385.pat 2021)[IGV] Homo sapiens GCA_018852605.1_HG002.alt.pat.f1_v2 SAMN03283347 PRJNA727430 2021-06-11 primates
241 human betaherpesvirus 6A (U1102 1995 genbank)[IGV] Human betaherpesvirus 6A GCA_000845685.2_ViralProj14462 n/a PRJNA485481 2018-02-16 viral
242 human T2T CHM13 v2.0[IGV] Homo sapiens GCA_009914755.4_T2T-CHM13v2.0 SAMN03255769 PRJNA559484 2022-01-24 primates
243 Iberian mole (v1 TD23 2020)[IGV] Talpa occidentalis GCF_014898055.1_MPIMG_talOcc4 SAMN10160270 PRJNA494291 2020-10-19 mammals
244 Iberian mole (v2 TD23 2020)[IGV] Talpa occidentalis GCF_014898055.2_MPIMG_talOcc4v2 SAMN10160270 PRJNA494291 2020-10-19 mammals
245 Indian glassy fish (v1 2019)[IGV] Parambassis ranga GCF_900634625.1_fParRan2.1 SAMEA4675621 PRJEB30257 2019-02-06 fish
246 Indian medaka[IGV] Oryzias melastigma GCF_002922805.1_Om_v0.7.RACA SAMN07596545 PRJNA401159 2018-02-07 fish
247 Jamaican fruit-eating bat (US092 2019 Broad)[IGV] Artibeus jamaicensis GCA_004027435.1_ArtJam_v1_BIUU SAMN07678132 PRJNA399471 2019-01-16 mammals
248 Japanese quail[IGV] Coturnix japonica GCF_001577835.1_Coturnix_japonica_2.0 SAMN03989050 PRJNA292031 2016-03-01 birds
249 Jerdon's jumping ant (DR-91 v8.5 2018)[IGV] Harpegnathos saltator GCF_003227715.1_Hsal_v8.5 SAMN08810140 PRJNA445978 2018-06-14 invertebrate
250 kakapo (Jane v1 2019)[IGV] Strigops habroptila GCF_004027225.1_bStrHab1_v1.p SAMN09948751 PRJNA489135 2019-01-18 birds
251 kakapo (Jane v2 2020 genbank)[IGV] Strigops habroptila GCA_004027225.2_bStrHab1.2.pri SAMN09948751 PRJNA489135 2020-03-04 birds
252 koala (Bilbo 61053 2017)[IGV] Phascolarctos cinereus GCF_002099425.1_phaCin_unsw_v4.1 SAMN06198159 PRJNA359763 2017-04-18 mammals
253 Korean giant-fin mudskipper (v1 primary hap 2020 genbank)[IGV] Periophthalmus magnuspinnatus GCA_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
254 Korean giant-fin mudskipper (v1 primary hap 2020 refseq)[IGV] Periophthalmus magnuspinnatus GCF_009829125.1_fPerMag1.pri SAMN12629500 PRJNA561998 2020-01-03 fish
255 lanner falcon (bFalBia1 primary hap 2022 genbank)[IGV] Falco biarmicus GCA_023638135.1_bFalBia1.pri SAMN28688289 PRJNA842826 2022-06-02 birds
256 large cabbage white (genbank 2021)[IGV] Pieris brassicae GCA_905147105.1_ilPieBrab1.1 SAMEA7532735 PRJEB41887 2021-01-28 invertebrate
257 large tree shrew (BS70 2019 Broad)[IGV] Tupaia tana GCA_004365275.1_TupTan_v1_BIUU SAMN07678117 PRJNA399462 2019-03-22 mammals
258 leatherback sea turtle (v3 2020 refseq G10K)[IGV] Dermochelys coriacea GCF_009764565.2_rDerCor1.pri.v3 SAMN12629498 PRJNA561993 2020-12-09 vertebrate
259 leatherback sea turtle (v1 2019 genbank G10K)[IGV] Dermochelys coriacea GCA_009764565.1_rDerCor1.pri SAMN12629498 PRJNA561993 2019-12-19 vertebrate
260 leatherback sea turtle (v1 alternate hap 2019)[IGV] Dermochelys coriacea GCA_009762595.1_rDerCor1.alt SAMN12629498 PRJNA561994 2019-12-18 vertebrate
261 Leishmania infantum (JPCM5 2011 kinetoplastids genbank)[IGV] Leishmania infantum JPCM5 GCA_000002875.2_ASM287v2 SAMEA3138175 PRJNA12658 2011-11-08 invertebrate
262 Leishmania major (Friedlin 2011 kinetoplastids genbank)[IGV] Leishmania major strain Friedlin GCA_000002725.2_ASM272v2 SAMEA3138173 PRJNA10724 2011-02-14 invertebrate
263 leopard (Maewha 2016 genbank)[IGV] Panthera pardus GCA_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16 mammals
264 lesser Egyptian jerboa (JJ0015 2012 genbank)[IGV] Jaculus jaculus GCA_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30 mammals
265 lesser kestrel (v1 2021)[IGV] Falco naumanni GCF_017639655.1_bFalNau1.pat SAMN16870685 PRJNA702666 2021-03-30 birds
266 lesser rhea (bPtePen1 primary hap 2023 genbank)[IGV] Rhea pennata GCA_028389875.1_bPtePen1.pri SAMN32606345 PRJNA918801 2023-02-06 birds
267 lesser salmon catfish (fNeoGra1 primary hap 2023 genbank)[IGV] Neoarius graeffei GCA_027579695.1_fNeoGra1.pri SAMN28453209 PRJNA839496 2023-01-09 fish
268 lettuce (Salinas v7 2018)[IGV] Lactuca sativa GCF_002870075.1_Lsat_Salinas_v7 SAMN01730979 PRJNA173551 2018-01-09 plants
269 lettuce (Salinas v8 2020)[IGV] Lactuca sativa GCF_002870075.3_Lsat_Salinas_v8 SAMN01730979 PRJNA173551 2020-04-13 plants
270 live sharksucker (v1 2019)[IGV] Echeneis naucrates GCF_900963305.1_fEcheNa1.1 SAMEA4966390 PRJEB31992 2019-04-11 fish
271 lumpfish (2019 genbank)[IGV] Cyclopterus lumpus GCA_009769545.1_fCycLum1.pri SAMN12629502 PRJNA562003 2019-12-23 fish
272 Ma's night monkey genbank[IGV] Aotus nancymaae GCA_000952055.2_Anan_2.0 SAMN03121886 PRJNA251539 2017-06-09 primates
273 Malayan pangolin (MP_PG03-UM 2016 genbank)[IGV] Manis javanica GCA_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14 mammals
274 malo sina (v1 2012)[IGV] Oryza brachyantha GCF_000231095.1_Oryza_brachyantha.v1.4b SAMN02981362 PRJNA70533 2012-01-19 plants
275 mangrove rivulus[IGV] Kryptolebias marmoratus GCF_001649575.1_ASM164957v1 SAMN04622665 PRJNA317650 2016-05-22 fish
276 meadow brown (genbank 2021)[IGV] Maniola jurtina GCA_905333055.1_ilManJurt1.1 SAMEA7523158 PRJEB43489 2021-03-19 invertebrate
277 meerkat (BS45 2019 Broad)[IGV] Suricata suricatta GCA_004023905.1_SurSur_v1_BIUU SAMN07678040 PRJNA399357 2019-01-15 mammals
278 meercat (VVHF042 2019 DNA Zoo genbank)[IGV] Suricata suricatta GCA_006229205.1_meerkat_22Aug2017_6uvM2_HiC SAMN11840572 PRJNA540846 2019-07-03 mammals
279 melon fly (v1 USDA-PBARC White Pupae T1 2014)[IGV] Zeugodacus cucurbitae GCF_000806345.1_ASM80634v1 SAMN03083541 PRJNA259565 2014-12-23 invertebrate
280 minke whale (2013 genbank)[IGV] Balaenoptera acutorostrata scammoni GCA_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31 mammals
281 minke whale (primary hap 2023 genbank)[IGV] Balaenoptera acutorostrata GCA_949987535.1_mBalAcu1.1 SAMEA111380540 PRJEB61579 2023-05-01 mammals
282 mites & ticks V.jacobsoni (v1 VJ856 2017)[IGV] Varroa jacobsoni GCF_002532875.1_vjacob_1.0 SAMN07256664 PRJNA391052 2017-10-10 invertebrate
283 Mongolian gerbil (US013 2019 Broad)[IGV] Meriones unguiculatus GCA_004026785.1_MerUng_v1_BIUU SAMN07678137 PRJNA399432 2019-01-16 mammals
284 monito del monte (mDroGli1 primary hap 2021 genbank)[IGV] Dromiciops gliroides GCA_019393635.1_mDroGli1.pri SAMN18857598 PRJNA728141 2021-08-03 mammals
285 moth S.litura (Ishihara v1 2017)[IGV] Spodoptera litura GCF_002706865.1_ASM270686v1 SAMN05845584 PRJNA344815 2017-10-25 invertebrate
286 mung bean (VC1973A 2015 genbank)[IGV] Vigna radiata var. radiata GCA_000741045.2_Vradiata_ver6 SAMN02720863 PRJNA243847 2015-10-28 plants
287 mute swan (bCygOlo1 v1 primary hap 2019)[IGV] Cygnus olor GCA_009769625.1_bCygOlo1.pri SAMN12621369 PRJNA561960 2019-12-23 birds
288 mute swan (bCygOlo1 v1 alternate hap 2019)[IGV] Cygnus olor GCA_009769485.1_bCygOlo1.alt SAMN12621369 PRJNA561961 2019-12-19 birds
289 naked mole-rat (NMR 29 2012 genbank)[IGV] Heterocephalus glaber GCA_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17 mammals
290 narwhal (BS41 2019 Broad)[IGV] Monodon monoceros GCA_004026685.1_MonMon_M_v1_BIUU SAMN07678024 PRJNA399349 2019-01-16 mammals
291 Nelson's sparrow (bAmmNel1 primary hap 2023 genbank)[IGV] Ammospiza nelsoni GCA_027579445.1_bAmmNel1.pri SAMN28421656 PRJNA839456 2023-01-09 birds
292 nematode C.briggsae (AF16 v1 2008)[IGV] Caenorhabditis briggsae GCF_000004555.1_ASM455v1 n/a PRJNA10731 2008-05-01 invertebrate
293 New South Wales waratah (AGSP 2013)[IGV] Amborella trichopoda GCF_000471905.2_AMTR1.0 SAMN02313977 PRJNA212863 2013-09-30 plants
294 nine-banded armadillo (v3.0 3-136 2012 Baylor genbank)[IGV] Dasypus novemcinctus GCA_000208655.2_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
295 nine-banded armadillo (v3.0 3-136 2012 Baylor refseq)[IGV] Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06 mammals
296 North Atlantic right whale (hap2 2023 genbank)[IGV] Eubalaena glacialis GCA_028564815.1_mEubGla1.hap2 SAMN32746534 PRJNA924128 2023-02-09 mammals
297 northern elephant seal (v2 JK_09032017 2021)[IGV] Mirounga angustirostris GCF_021288785.1_ASM2128878v2 SAMN13072016 PRJNA512907 2021-12-26 mammals
298 northern house mosquito (v1 TS 2021)[IGV] Culex pipiens pallens GCF_016801865.1_TS_Cpip_V1 SAMN16414976 PRJNA668557 2021-02-02 invertebrate
299 northern pike (2020 genbank)[IGV] Esox lucius GCA_011004845.1_fEsoLuc1.pri SAMN12623624 PRJNA561977 2020-03-05 fish
300 northern white-cheeked gibbon (2012 GGSC)[IGV] Nomascus leucogenys GCA_000146795.3_Nleu_3.0 SAMN02981257 PRJNA13975 2012-12-08 primates
301 Norway rat (BN/NHsdMcwi 2024)[IGV] Rattus norvegicus GCA_036323735.1_GRCr8 SAMN38730095 PRJNA1027884 2024-01-31 mammals
302 Norway rat BN7 genbank[IGV] Rattus norvegicus GCA_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10 mammals
303 olive baboon (2017 HGSC RefSeq)[IGV] Papio anubis GCF_000264685.3_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
304 olive baboon (2017 HGSC genbank)[IGV] Papio anubis GCA_000264685.2_Panu_3.0 SAMN02981400 PRJNA54005 2017-04-20 primates
305 painted lady (genbank 2021)[IGV] Vanessa cardui GCA_905220365.1_ilVanCard2.1 SAMEA7523147 PRJEB42869 2021-02-16 invertebrate
306 pale spear-nosed bat (MPI-MPIP v1 2019)[IGV] Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 2019-02-07 mammals
307 pea aphid (AL4f v1 2019)[IGV] Acyrthosiphon pisum GCF_005508785.1_pea_aphid_22Mar2018_4r6ur SAMN10253041 PRJNA496478 2019-05-20 invertebrate
308 peregrine falcon (bFalPer1 primary hap 2022 genbank)[IGV] Falco peregrinus GCA_023634155.1_bFalPer1.pri SAMN28688290 PRJNA842834 2022-06-02 birds
309 pigeon pea (v1 2016 BGI)[IGV] Cajanus cajan GCF_000340665.1_C.cajan_V1.0 SAMN02981370 PRJNA72815 2016-09-29 plants
310 pike-perch[IGV] Sander lucioperca GCF_008315115.1_SLUC_FBN_1 SAMN12618724 PRJNA561467 2019-09-06 fish
311 platypus (Pmale09 2018 BGI)[IGV] Ornithorhynchus anatinus GCA_002966995.1_ASM296699v1 SAMN08537700 PRJNA433451 2018-03-02 mammals
312 platypus (Pmale09 v1 2019)[IGV] Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 SAMN08537700 PRJNA489114 2019-02-07 mammals
313 platypus (Pmale09 v3 2020)[IGV] Ornithorhynchus anatinus GCA_004115215.3_mOrnAna1.pri.v3 SAMN08537700 PRJNA489114 2020-04-13 mammals
314 polar bear (Baiyulong BGI 2014 genbank)[IGV] Ursus maritimus GCA_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09 mammals
315 prehistoric monster fish (2019 genbank)[IGV] Thalassophryne amazonica GCA_902500255.1_fThaAma1.1 SAMEA104129913 PRJEB34606 2019-09-30 fish
316 pronghorn (BS35 2019 Broad)[IGV] Antilocapra americana GCA_004027515.1_AntAmePen_v1_BIUU SAMN07678063 PRJNA399373 2019-01-16 mammals
317 Przewalski's horse (Burgud 2014 genbank)[IGV] Equus przewalskii GCA_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05 mammals
318 puma (SC36_Marlon 2018 genbank)[IGV] Puma concolor GCA_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19 mammals
319 pygmy chimpanzee (Ulindi genbank 2015)[IGV] Pan paniscus GCA_000258655.2_panpan1.1 SAMEA1029457 PRJNA49285 2015-08-18 primates
320 pygmy chimpanzee (v1 primary hap 2023)[IGV] Pan paniscus GCF_029289425.1_NHGRI_mPanPan1-v1.1-0.1.freeze_pri SAMN13935689 PRJNA942951 2023-03-20 primates
321 pygmy sperm whale (mKogBre1 haplotype 1 2022 genbank)[IGV] Kogia breviceps GCA_026419965.1_mKogBre1_haplotype_1 SAMN31719513 PRJNA901930 2022-11-27 mammals
322 rabbit (New Zealand White DNA-2018 2021 genbank)[IGV] Oryctolagus cuniculus GCA_009806435.2_UM_NZW_1.0 SAMN12179861 PRJNA274594 2021-02-04 mammals
323 rabbit (Thorbecke 2009 Broad genbank)[IGV] Oryctolagus cuniculus GCA_000003625.1_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20 mammals
324 radish (v1 WS10039 2015)[IGV] Raphanus sativus GCF_000801105.1_Rs1.0 SAMN03084390 PRJNA239785 2015-09-29 plants
325 red admiral (genbank 2021)[IGV] Vanessa atalanta GCA_905147765.2_ilVanAtal1.2 SAMEA7523145 PRJEB41956 2021-09-28 invertebrate
326 red-crested turaco (2014 BGI)[IGV] Tauraco erythrolophus GCF_000709365.1_ASM70936v1 SAMN02339893 PRJNA212908 2014-06-25 birds
327 red-legged seriema (BGI_N322 2014 BGI)[IGV] Cariama cristata GCF_000690535.1_ASM69053v1 SAMN02318733 PRJNA212889 2014-05-12 birds
328 red mason bee (LIB18336 2019)[IGV] Osmia bicornis bicornis GCF_004153925.1_Obicornis_v3 SAMN05967202 PRJNA285788 2019-02-11 invertebrate
329 red-throated loon (hap2 2023 genbank)[IGV] Gavia stellata GCA_030936135.1_bGavSte3.hap2 SAMN37096312 PRJNA1008847 2023-08-30 birds
330 reedfish (2019)[IGV] Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 SAMEA104026374 PRJEB31579 2019-03-26 vertebrate
331 Rhesus monkey (2015 Baylor)[IGV] Macaca mulatta GCA_000772875.3_Mmul_8.0.1 n/a PRJNA214746 2015-11-30 primates
332 Rice's whale (hap2 2023 genbank)[IGV] Balaenoptera ricei GCA_028023285.1_mBalRic1.hap2 SAMN32629060 PRJNA921698 2023-01-30 mammals
333 rifleman (BGI 2014)[IGV] Acanthisitta chloris GCF_000695815.1_ASM69581v1 SAMN02318032 PRJNA212877 2014-05-27 birds
334 ring-tailed lemur BS26 Broad 2019[IGV] Lemur catta GCA_004024665.1_LemCat_v1_BIUU SAMN07678092 PRJNA399402 2019-01-15 primates
335 Rio pearlfish (Nwh7 v1 2020)[IGV] Nematolebias whitei GCF_014905685.1_NemWhi1 SAMN12588121 PRJNA560526 2020-10-22 fish
336 river trout (v1 2019)[IGV] Salmo trutta GCF_901001165.1_fSalTru1.1 SAMEA994732 PRJEB32115 2019-06-02 fish
337 rock ptarmigan (primary hap 2022 genbank)[IGV] Lagopus muta GCA_023343835.1_bLagMut1_primary SAMN25144835 PRJNA836583 2022-05-12 birds
338 Ryukyu mouse (v1 2017 EBI genbank)[IGV] Mus caroli GCA_900094665.2_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28 mammals
339 Ryukyu mouse (v1 2017 EBI refseq)[IGV] Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28 mammals
340 saddleback dolphin (primary hap 2023 genbank)[IGV] Delphinus delphis GCA_949987515.1_mDelDel1.1 SAMEA111380534 PRJEB61571 2023-05-01 mammals
341 Saker falcon (bFalChe1 primary hap 2022 genbank)[IGV] Falco cherrug GCA_023634085.1_bFalChe1.pri SAMN28688204 PRJNA842831 2022-06-02 birds
342 salmon louse (v1.1 2020)[IGV] Lepeophtheirus salmonis GCF_016086655.2_UVic_Lsal_1.1 SAMN16628719 PRJNA673901 2020-12-16 invertebrate
343 saltmarsh sparrow (bAmmCau1 primary hap 2023 genbank)[IGV] Ammospiza caudacuta GCA_027887145.1_bAmmCau1.pri SAMN28421630 PRJNA839452 2023-01-18 birds
344 Sardinian treefrog (hap1 2023 genbank)[IGV] Hyla sarda GCA_029499605.1_aHylSar1.hap1 SAMN32629340 PRJNA921707 2023-04-07 vertebrate
345 SARS-CoV-2 (Jan 2020 COVID-19)[IGV] Severe acute respiratory syndrome coronavirus 2 GCF_009858895.2_ASM985889v3 n/a PRJNA485481 2020-01-17 viral
346 sea anemones (CC7 2015 genbank)[IGV] Exaiptasia diaphana GCA_001417965.1_Aiptasia_genome_1.1 SAMN03839803 PRJNA261862 2015-10-28 invertebrate
347 sea otter (GAN:26980312 2017 genbank)[IGV] Enhydra lutris kenyoni GCA_002288905.2_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11 mammals
348 segmented worms (v1 2012)[IGV] Helobdella robusta GCF_000326865.1_Helobdella_robusta_v1.0 SAMN02769625 PRJNA175704 2012-12-20 invertebrate
349 siamang (v1 Jambi primary hap 2023)[IGV] Symphalangus syndactylus GCF_028878055.1_NHGRI_mSymSyn1-v1.1-hic.freeze_pri SAMN30216103 PRJNA916729 2023-02-28 primates
350 Siamese fighting fish (v2 2019)[IGV] Betta splendens GCF_900634795.2_fBetSpl5.2 SAMEA104381735 PRJEB30365 2019-03-20 fish
351 Siamese fighting fish (v3 2020)[IGV] Betta splendens GCF_900634795.3_fBetSpl5.3 SAMEA104381735 PRJEB30365 2020-08-25 fish
352 silvery gibbon (v1 HM0894 2020 UC Santa Cruz)[IGV] Hylobates moloch GCF_009828535.1_HMol SAMN12851060 PRJNA575281 2020-01-03 primates
353 silvery gibbon (v2 HMO894 2020 UC Santa Cruz)[IGV] Hylobates moloch GCF_009828535.2_HMol_V2 SAMN12851060 PRJNA575281 2020-02-13 primates
354 slow loris (BS32 2019)[IGV] Nycticebus coucang GCA_004027815.1_NycCou_v1_BIUU SAMN07678100 PRJNA399409 2019-01-16 primates
355 slow loris (primary hap 2022 genbank)[IGV] Nycticebus coucang GCA_027406575.1_mNycCou1.pri SAMN28408555 PRJNA838348 2022-12-28 mammals
356 small Madagascar hedgehog[IGV] Echinops telfairi GCA_000313985.1_EchTel2.0 SAMN00216137 PRJNA12590 2012-11-28 mammals
357 smaller spotted catshark (v1.1 primary hap 2020 refseq)[IGV] Scyliorhinus canicula GCF_902713615.1_sScyCan1.1 SAMEA994730 notFound 2020-12-17 vertebrate
358 smalltooth sawfish (2019 genbank)[IGV] Pristis pectinata GCA_009764475.1_sPriPec2.pri SAMN12629505 PRJNA562009 2019-12-19 vertebrate
359 snowberry fruit fly (East Lansing v1.0 2016)[IGV] Rhagoletis zephyria GCF_001687245.1_Rhagoletis_zephyria_1.0 SAMN04977950 PRJNA321204 2016-07-19 invertebrate
360 sockeye salmon (On170113-E2 v1 2019)[IGV] Oncorhynchus nerka GCF_006149115.1_Oner_1.0 SAMN11519041 PRJNA530256 2019-06-07 fish
361 southern bluefin tuna (primary hap 2021 genbank)[IGV] Thunnus maccoyii GCA_910596095.1_fThuMac1.1 SAMEA8654747 PRJEB46021 2021-07-07 fish
362 southern grasshopper mouse (US017 2019 Broad)[IGV] Onychomys torridus GCA_004026725.1_OnyTor_v1_BIUU SAMN07678022 PRJNA399348 2019-01-16 mammals
363 southern tamandua (Broad 2019)[IGV] Tamandua tetradactyla GCA_004025105.1_TamTet_v1_BIUU SAMN07678112 PRJNA399420 2019-01-15 mammals
364 southern two-toed sloth (US054 2019 Broad)[IGV] Choloepus didactylus GCA_004027855.1_ChoDid_v1_BIUU SAMN07678073 PRJNA399383 2019-01-16 mammals
365 southern white rhinoceros (SDZICR_KB13650 2012 genbank)[IGV] Ceratotherium simum simum GCA_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31 mammals
366 soybean (US DOE JGI-PGF v2.0 2010)[IGV] Glycine max GCF_000004515.4_Glycine_max_v2.0 SAMN00002965 PRJNA19861 2015-11-04 plants
367 soybean (US DOE JGI-PGF v2.1 2018)[IGV] Glycine max GCF_000004515.5_Glycine_max_v2.1 SAMN00002965 PRJNA19861 2018-07-24 plants
368 speckled wood butterfly (genbank 2021)[IGV] Pararge aegeria GCA_905163445.1_ilParAegt1.1 SAMEA7532732 PRJEB42039 2021-01-28 invertebrate
369 sperm whale (SW-GA 2019)[IGV] Physeter catodon GCF_002837175.2_ASM283717v2 SAMN07836523 PRJNA411766 2019-03-08 mammals
370 sponges A.queenslandica (v1.0 2010 JGI-PGF)[IGV] Amphimedon queenslandica GCF_000090795.1_v1.0 SAMN02743868 PRJNA39517 2010-05-28 invertebrate
371 sterlet (v1 Gen_M01 2020)[IGV] Acipenser ruthenus GCF_010645085.1_ASM1064508v1 SAMN12612932 PRJNA561280 2020-02-19 vertebrate
372 sterlet (maternal hap 2022 genbank)[IGV] Acipenser ruthenus GCA_902713425.2_fAciRut3.2_maternal_haplotype SAMEA5572864 PRJEB35912 2022-02-02 fish
373 stony coral S.pistillata (v1 CSM Monaco 2017)[IGV] Stylophora pistillata GCF_002571385.1_Stylophora_pistillata_v1 SAMN03491624 PRJNA281535 2017-10-17 invertebrate
374 striped catfish (primary hap 2022 genbank)[IGV] Pangasianodon hypophthalmus GCA_027358585.1_fPanHyp1.pri SAMN32348883 PRJNA914796 2022-12-28 fish
375 Sumatran orangutan (Susie 2018 genbank)[IGV] Pongo abelii GCA_002880775.3_Susie_PABv2 SAMN06275555 PRJNA369439 2018-01-19 primates
376 Sumatran orangutan (v1 AG06213 primary hap 2023)[IGV] Pongo abelii GCF_028885655.1_NHGRI_mPonAbe1-v1.1-hic.freeze_pri SAMN10521808 PRJNA916743 2023-02-28 primates
377 Swainson's thrush (bCatUst1 v1 primary hap 2019)[IGV] Catharus ustulatus GCF_009819885.1_bCatUst1.pri SAMN12618602 PRJNA561933 2019-12-31 birds
378 Swainson's thrush (bCatUst1 v1 alternate hap 2019)[IGV] Catharus ustulatus GCA_009819505.1_bCatUst1.alt SAMN12618602 PRJNA561934 2019-12-23 birds
379 swamp sparrow (bMelGeo1 primary hap 2023 genbank)[IGV] Melospiza georgiana GCA_028018845.1_bMelGeo1.pri SAMN22787412 PRJNA915609 2023-01-31 birds
380 Tasmanian devil[IGV] Sarcophilus harrisii GCF_000189315.1_Devil_ref_v7.0 SAMN02953780 PRJNA51853 2011-02-17 mammals
381 thale cress (tair10 Columbia 2011)[IGV] Arabidopsis thaliana GCF_000001735.3_TAIR10 SAMN03081427 PRJNA10719 2011-05-11 plants
382 thirteen-lined ground squirrel (2011)[IGV] Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 SAMN00210855 PRJNA61725 2011-11-29 mammals
383 thorny skate (CabotCenter1 v1 2020 genbank)[IGV] Amblyraja radiata GCA_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
384 thorny skate (CabotCenter1 v1 2020 refseq)[IGV] Amblyraja radiata GCF_010909765.1_sAmbRad1.pri SAMN09948523 PRJNA591369 2020-02-21 vertebrate
385 tidepool copepod (San Diego 2019 genbank)[IGV] Tigriopus californicus GCA_007210705.1_Tcal_SD_v2.1 SAMN02640207 PRJNA237968 2019-07-29 invertebrate
386 tiger tail seahorse (QL1 v1 2016)[IGV] Hippocampus comes GCF_001891065.1_H_comes_QL1_v1 SAMN04531611 PRJNA314292 2016-12-08 fish
387 tomato (v3.0 Heinz 1706 2018)[IGV] Solanum lycopersicum GCF_000188115.4_SL3.0 SAMN02981290 PRJNA119 2018-04-18 plants
388 tsetse fly (v1 IAEA_lab_2018 2020)[IGV] Glossina fuscipes GCF_014805625.1_Yale_Gfus_2 SAMN13613662 PRJNA596165 2020-09-30 invertebrate
389 two-lined caecilian (v1.1 2019 refseq)[IGV] Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 SAMEA104387956 PRJEB32111 2019-06-02 vertebrate
390 Ugandan red Colobus (RC106 v1 2017)[IGV] Piliocolobus tephrosceles GCA_002776525.1_ASM277652v1 SAMN07735529 PRJNA413051 2017-11-16 primates
391 Ugandan red Colobus (RC106 v2 2018)[IGV] Piliocolobus tephrosceles GCF_002776525.2_ASM277652v2 SAMN07735529 PRJNA413051 2018-09-11 primates
392 Ugandan red Colobus (RC106 v3 2019)[IGV] Piliocolobus tephrosceles GCF_002776525.3_ASM277652v3 SAMN07735529 PRJNA413051 2019-12-12 primates
393 Ugandan red Colobus (RC106 v4 2019)[IGV] Piliocolobus tephrosceles GCF_002776525.4_ASM277652v4 SAMN07735529 PRJNA413051 2019-12-12 primates
394 Upper Galilee mountains blind mole rat (#2095 2014 genbank)[IGV] Nannospalax galili GCA_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05 mammals
395 valley oak (v3.0 2019)[IGV] Quercus lobata GCF_001633185.1_ValleyOak3.0 SAMN10584531 PRJNA308314 2019-01-11 plants
396 vegetable marrow (v1 mu-cu-16 2017)[IGV] Cucurbita pepo subsp. pepo GCF_002806865.1_ASM280686v2 SAMN07125871 PRJNA386743 2017-12-07 plants
397 wasp C.solmsi marchali (v1 2013)[IGV] Ceratosolen solmsi marchali GCF_000503995.1_CerSol_1.0 SAMN02953852 PRJNA178998 2013-12-04 invertebrate
398 water buffalo (Mediterranean 2013)[IGV] Bubalus bubalis GCA_000471725.1_UMD_CASPUR_WB_2.0 SAMN02191888 PRJNA207334 2013-09-30 mammals
399 Weddell seal (WS11-02 2013 genbank)[IGV] Leptonychotes weddellii GCA_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29 mammals
400 western European hedgehog (2012 genbank)[IGV] Erinaceus europaeus GCA_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19 mammals
401 western European hedgehog (primary hap 2023 genbank)[IGV] Erinaceus europaeus GCA_950295315.1_mEriEur2.1 SAMEA13207416 PRJEB61758 2023-05-01 mammals
402 western European house mouse (WSB_EiJ v1 2016)[IGV] Mus musculus domesticus GCA_001624835.1_WSB_EiJ_v1 SAMN04489831 PRJNA310854 2016-04-26 mammals
403 western lowland gorilla (Susie 2016)[IGV] Gorilla gorilla gorilla GCA_900006655.3_Susie3 SAMEA3541598 PRJEB10880 2016-12-22 primates
404 western lowland gorilla (v1.1 KB3781 2023)[IGV] Gorilla gorilla gorilla GCF_029281585.1_NHGRI_mGorGor1-v1.1-0.2.freeze_pri SAMN04003007 PRJNA942267 2023-03-20 primates
405 western painted turtle (v303 2014)[IGV] Chrysemys picta bellii GCF_000241765.3_Chrysemys_picta_bellii-3.0.3 SAMN02713681 PRJNA78657 2014-03-31 vertebrate
406 western painted turtle (v304 RCT428 2020)[IGV] Chrysemys picta bellii GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 SAMN02713681 PRJNA78657 2020-08-21 vertebrate
407 western predatory mite (v1.0 2012)[IGV] Galendromus occidentalis GCF_000255335.1_Mocc_1.0 SAMN00849407 PRJNA62309 2012-03-27 invertebrate
408 western wild mouse (SPRET_EiJ v1 2016)[IGV] Mus spretus GCA_001624865.1_SPRET_EiJ_v1 SAMN04489830 PRJNA310854 2016-04-26 mammals
409 wheat stem sawfly (v1 2014)[IGV] Cephus cinctus GCF_000341935.1_Ccin1 SAMN02905554 PRJNA168335 2014-07-09 invertebrate
410 white-beaked dolphin (primary hap 2023 genbank)[IGV] Lagenorhynchus albirostris GCA_949774975.1_mLagAlb1.1 SAMEA111380537 PRJEB60994 2023-04-08 mammals
411 white-footed mouse[IGV] Peromyscus leucopus GCF_004664715.1_Pero_0.1 SAMN03488028 PRJNA281425 2019-04-05 mammals
412 white leghorn X broiler chicken (leghorn haplotype v1 2021)[IGV] Gallus gallus GCF_016700215.1_bGalGal1.pat.whiteleghornlayer.GRCg7w SAMN15960293 PRJNA660758 2021-01-19 birds
413 white-tailed deer (Pink-7 2017 genbank)[IGV] Odocoileus virginianus texanus GCA_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20 mammals
414 white-tufted-ear marmoset (CJ-08-46 2017)[IGV] Callithrix jacchus GCA_002754865.1_ASM275486v1 SAMN07586072 PRJNA401030 2017-11-06 primates
415 white-tufted-ear marmoset (v1.0 paternal 2020)[IGV] Callithrix jacchus GCA_011100535.1_mCalJac1.pat SAMN12368443 PRJNA558087 2020-03-10 primates
416 white-tufted-ear marmoset (v1.2 2021 genbank)[IGV] Callithrix jacchus GCA_011100555.2_mCalJa1.2.pat.X SAMN12368443 PRJNA597600 2021-04-28 primates
417 white-tufted-ear marmoset (2010 Wash U)[IGV] Callithrix jacchus GCF_000004665.1_Callithrix_jacchus-3.2 SAMN02981242 PRJNA20401 2010-01-22 primates
418 white-tufted-ear marmoset (cj1700 genbank)[IGV] Callithrix jacchus GCA_009663435.1_Callithrix_jacchus_cj1700_1.0 SAMN12783337 PRJNA566173 2019-11-15 primates
419 whooping crane (maternal hap 2023 genbank)[IGV] Grus americana GCA_028858705.1_bGruAme1.mat SAMN32775697 PRJNA924953 2023-02-24 birds
420 wild Bactrian camel (CB1 Naran 2013 genbank)[IGV] Camelus ferus GCA_000311805.2_CB1 SAMN01910617 PRJNA76177 2013-07-30 mammals
421 wild emmer wheat (Zavitan Atlit2015 v2.0 2019)[IGV] Triticum dicoccoides GCF_002162155.1_WEW_v2.0 SAMN04448013 PRJNA310175 2019-02-04 plants
422 wild peanut A.duranensis (v1 V14167 2017)[IGV] Arachis duranensis GCF_000817695.2_Aradu1.1 SAMN02982871 PRJNA258023 2017-04-25 plants
423 wild strawberry (2011 genbank)[IGV] Fragaria vesca subsp. vesca GCA_000184155.1_FraVesHawaii_1.0 SAMN00120060 PRJNA60037 2011-02-24 plants
424 wire-tailed manakin (2018)[IGV] Pipra filicauda GCF_003945595.1_ASM394559v1 SAMN08774045 PRJNA445296 2018-12-14 birds
425 woodchuck (CNAG 2019)[IGV] Marmota monax GCA_901343595.1_MONAX5 SAMEA91498168 PRJEB19462 2019-09-13 mammals
426 woodchuck (v1.0 LI92 2021)[IGV] Marmota monax GCF_021218885.1_Marmota_monax_Labrador192_V1.0 SAMN21332666 PRJNA761405 2021-12-15 mammals
427 Yangtze finless porpoise (v1 2018 refseq)[IGV] Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
428 Yangtze River dolphin (v1 BGI 2013 genbank)[IGV] Lipotes vexillifer GCA_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31 mammals
429 Yangtze River dolphin (v1 BGI 2013 refseq)[IGV] Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31 mammals
430 Yangtze finless porpoise (v1 wild 2018 genbank)[IGV] Neophocaena asiaeorientalis asiaeorientalis GCA_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03 mammals
431 yellow-bellied marmot (v1 2018)[IGV] Marmota flaviventris GCF_003676075.1_ASM367607v1 SAMN10078668 PRJNA491472 2018-10-22 mammals
432 yellow-bellied marmot (SJ_83 v2.0 2019)[IGV] Marmota flaviventris GCF_003676075.2_GSC_YBM_2.0 SAMN10078668 PRJNA491472 2019-05-24 mammals
433 yellow-footed antechinus (v1 Samford, QLD, Australia AdamAnt 2021)[IGV] Antechinus flavipes GCA_016432865.1_AdamAnt SAMN16807749 PRJNA565840 2021-01-06 mammals
434 yellow-throated sandgrouse (BGI_N339 2014 BGI)[IGV] Pterocles gutturalis GCF_000699245.1_ASM69924v1 SAMN02339892 PRJNA212906 2014-06-09 birds
435 yellowtail amberjack (v1 SW California HSWRI2012SDOR001 2017)[IGV] Seriola lalandi dorsalis GCF_002814215.1_Sedor1 SAMN04902367 PRJNA319656 2017-12-08 fish
436 zebra finch (Black17 v1 2019 genbank)[IGV] Taeniopygia guttata GCA_003957565.2_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
437 zebra finch (Black17 v1 2019 refseq)[IGV] Taeniopygia guttata GCF_003957565.1_bTaeGut1_v1.p SAMN02981239 PRJNA489098 2019-05-16 birds
438 zebu cattle (Nelore 2014 genbank)[IGV] Bos indicus GCA_000247795.2_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25 mammals
439 zig-zag eel (v1.1 2018)[IGV] Mastacembelus armatus GCF_900324485.1_fMasArm1.1 SAMEA104026378 PRJEB25769 2018-03-31 fish

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 207 assemblies assembly stats track stats
Mammals 504 assemblies assembly stats track stats
Birds 326 assemblies assembly stats track stats
Fishes 357 assemblies assembly stats track stats
other vertebrates 198 assemblies assembly stats track stats
Invertebrates 641 assemblies assembly stats track stats
Plants 251 assemblies assembly stats track stats
Fungi 612 assemblies assembly stats track stats
Viruses 265 assemblies assembly stats track stats
Bacteria 74 assemblies assembly stats track stats
legacy/superseded 437 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 775 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats