Mammals Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of mammals only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want.
  2. Instead, you can attach the entire set of assemblies as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
  3. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/mammals/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Mammals Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column
The common name/view in browser will attach only that single assembly to the genome browser.
The scientific name/and data download link provides access to the files for that one assembly hub.
The class/VGP link provides access to the VGP GenomeArk page for that genome
The other links provide access to NCBI resources for these assemblies.

count common name and
view in browser
scientific name
and data download
NCBI assembly bioSamplebioProject assembly date,
source link
1 aardvark Orycteropus afer afer GCF_000298275.1_OryAfe1.0 SAMN00744890 PRJNA74587 2012-09-20
2 African savanna elephant Loxodonta africana GCF_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15
3 alpaca Vicugna pacos GCF_000164845.3_VicPac3.1 SAMN01096418 PRJNA544883 2019-07-15
4 Alpine marmot Marmota marmota marmota GCF_001458135.1_marMar2.1 SAMEA3214822 PRJEB8272 2015-11-20
5 American beaver Castor canadensis GCF_001984765.1_C.can_genome_v1.0 SAMN06187566 PRJNA359140 2017-02-04
6 American bison Bison bison bison GCF_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08
7 American pika Ochotona princeps GCF_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27
8 Amur tiger Panthera tigris altaica GCF_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06
9 Arabian camel Camelus dromedarius GCF_000803125.2_CamDro3 SAMN03252735 PRJNA269274 2019-10-07
10 Arctic ground squirrel Urocitellus parryii GCF_003426925.1_ASM342692v1 SAMN09469529 PRJNA477386 2018-08-24
11 ass Equus asinus GCF_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02
12 Bactrian camel Camelus bactrianus GCF_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23
13 David's myotis bat Myotis davidii GCF_000327345.1_ASM32734v1 SAMN01103204 PRJNA171994 2012-12-20
14 Natal long-fingered bat Miniopterus natalensis GCF_001595765.1_Mnat.v1 SAMN03652541 PRJNA283550 2016-03-22
15 beluga whale Delphinapterus leucas GCF_002288925.2_ASM228892v3 SAMN06216270 PRJNA360851 2019-08-29
16 big brown bat Eptesicus fuscus GCF_000308155.1_EptFus1.0 SAMN00767986 PRJNA72449 2012-11-08
17 black flying fox Pteropus alecto GCF_000325575.1_ASM32557v1 SAMN01103203 PRJNA171993 2013-12-04
18 Brandt's bat Myotis brandtii GCF_000412655.1_ASM41265v1 SAMN01801565 PRJNA178678 2013-06-28
19 brown bear Ursus arctos horribilis GCF_003584765.1_ASM358476v1 SAMN09907428 PRJNA487641 2018-09-20
20 California sea lion Zalophus californianus GCF_900631625.1_zalCal2.2 SAMEA5145493 PRJEB30031 2018-12-07
21 Canada lynx Lynx canadensis GCF_007474595.1_mLynCan4_v1.p SAMN09948483 PRJNA489107 2019-07-26
22 Cape elephant shrew Elephantulus edwardii GCF_000299155.1_EleEdw1.0 SAMN00749966 PRJNA74589 2012-10-10
23 Cape golden mole Chrysochloris asiatica GCF_000296735.1_ChrAsi1.0 SAMN00744889 PRJNA74591 2012-09-19
24 cattle Bos taurus GCF_002263795.1_ARS-UCD1.2 SAMN03145444 PRJNA391427 2018-04-11
25 cheetah Acinonyx jubatus GCF_003709585.1_Aci_jub_2 SAMN09699341 PRJNA482183 2018-10-22
26 Chinese hamster Cricetulus griseus GCF_000223135.1_CriGri_1.0 SAMN02981352 PRJNA69991 2011-08-23
27 Chinese hamster Cricetulus griseus GCF_003668045.1_CriGri-PICR SAMN07140313 PRJNA389969 2018-10-21
28 Chinese tree shrew Tupaia chinensis GCF_000334495.1_TupChi_1.0 SAMN01084043 PRJNA169406 2013-01-31
29 common bottlenose dolphin Tursiops truncatus GCF_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28
30 common vampire bat Desmodus rotundus GCF_002940915.1_ASM294091v2 SAMN07783852 PRJNA414273 2018-02-23
31 common wombat Vombatus ursinus GCF_900497805.2_bare-nosed_wombat_genome_assembly SAMEA4791334 PRJEB27783 2018-12-10
32 Damara mole-rat Fukomys damarensis GCF_000743615.1_DMR_v1.0 SAMN02339281 PRJNA190641 2014-09-04
33 degu Octodon degus GCF_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01
34 dog Canis lupus familiaris GCF_000002285.3_CanFam3.1 SAMN02953603 PRJNA13179 2011-11-02
35 domestic cat Felis catus GCF_000181335.3_Felis_catus_9.0 SAMN02953640 PRJNA16726 2017-11-20
36 domestic ferret Mustela putorius furo GCF_000215625.1_MusPutFur1.0 SAMN00149631 PRJNA59869 2011-06-02
37 domestic guinea pig Cavia porcellus GCF_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03
38 Egyptian rousette Rousettus aegyptiacus GCF_001466805.2_Raegyp2.0 SAMN04287759 PRJNA303181 2016-03-17
39 European shrew Sorex araneus GCF_000181275.1_SorAra2.0 SAMN00210854 PRJNA13689 2012-08-27
40 Florida manatee Trichechus manatus latirostris GCF_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23
41 giant panda Ailuropoda melanoleuca GCF_000004335.2_AilMel_1.0 SAMN00008160 PRJNA38683 2009-12-15
42 goat Capra hircus GCF_001704415.1_ARS1 SAMN03863711 PRJNA290100 2016-08-24
43 golden hamster Mesocricetus auratus GCF_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29
44 gray short-tailed opossum Monodelphis domestica GCF_000002295.2_MonDom5 SAMN02953611 PRJNA12561 2007-01-25
45 great roundleaf bat Hipposideros armiger GCF_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06
46 Hawaiian monk seal Neomonachus schauinslandi GCF_002201575.1_ASM220157v1 SAMN06841387 PRJNA384558 2017-06-20
47 horse Equus caballus GCF_002863925.1_EquCab3.0 SAMN02953672 PRJNA421018 2018-01-05
48 house mouse Mus musculus GCF_000001635.26_GRCm38.p6 n/a PRJNA20689 2017-09-15
49 hybrid cattle Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 SAMN08473802 PRJNA432857 2018-11-30
50 killer whale Orcinus orca GCF_000331955.2_Oorc_1.1 SAMN01180276 PRJNA167475 2013-01-31
51 koala Phascolarctos cinereus GCF_002099425.1_phaCin_unsw_v4.1 SAMN06198159 PRJNA359763 2017-04-18
52 large flying fox Pteropus vampyrus GCF_000151845.1_Pvam_2.0 SAMN02894360 PRJNA20325 2014-12-05
53 leopard Panthera pardus GCF_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16
54 lesser Egyptian jerboa Jaculus jaculus GCF_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30
55 little brown bat Myotis lucifugus GCF_000147115.1_Myoluc2.0 SAMN02953645 PRJNA16951 2010-09-14
56 long-finned pilot whale Globicephala melas GCF_006547405.1_ASM654740v1 SAMN11083132 PRJNA525909 2019-07-01
57 long-tailed chinchilla Chinchilla lanigera GCF_000276665.1_ChiLan1.0 SAMN00632093 PRJNA68239 2012-08-28
58 Malayan pangolin Manis javanica GCF_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14
59 meerkat Suricata suricatta GCF_006229205.1_meerkat_22Aug2017_6uvM2_HiC SAMN11840572 PRJNA540846 2019-07-03
60 minke whale Balaenoptera acutorostrata scammoni GCF_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31
61 Mongolian gerbil Meriones unguiculatus GCF_002204375.1_MunDraft-v1.0 SAMN06897401 PRJNA385619 2017-06-21
62 naked mole-rat Heterocephalus glaber GCF_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17
63 narwhal Monodon monoceros GCF_005190385.1_NGI_Narwhal_1 SAMN10872456 PRJNA520934 2019-05-06
64 nine-banded armadillo Dasypus novemcinctus GCF_000208655.1_Dasnov3.0 SAMN02953623 PRJNA12594 2012-01-06
65 northern fur seal Callorhinus ursinus GCF_003265705.1_ASM326570v1 SAMN09379881 PRJNA475116 2018-06-26
66 Norway rat Rattus norvegicus GCF_000001895.5_Rnor_6.0 SAMN02808228 PRJNA10629 2014-07-01
67 Norway rat Rattus norvegicus GCF_000002265.2_Rn_Celera SAMN03000701 PRJNA13999 2006-12-06
68 Ord's kangaroo rat Dipodomys ordii GCF_000151885.1_Dord_2.0 SAMN02900551 PRJNA20385 2014-12-12
69 Pacific walrus Odobenus rosmarus divergens GCF_000321225.1_Oros_1.0 SAMN01180787 PRJNA167474 2013-01-16
70 Pacific white-sided dolphin Lagenorhynchus obliquidens GCF_003676395.1_ASM367639v1 SAMN09386610 PRJNA475306 2018-10-23
71 pale spear-nosed bat Phyllostomus discolor GCF_004126475.1_mPhyDis1_v1.p SAMN09948786 PRJNA489141 2019-02-07
72 pig Sus scrofa GCF_000003025.6_Sscrofa11.1 SAMN02953785 PRJNA13421 2017-02-07
73 platypus Ornithorhynchus anatinus GCF_004115215.1_mOrnAna1.p.v1 SAMN08537700 PRJNA489114 2019-02-07
74 polar bear Ursus maritimus GCF_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09
75 prairie deer mouse Peromyscus maniculatus bairdii GCF_000500345.1_Pman_1.0 SAMN00848614 PRJNA53563 2013-12-03
76 prairie vole Microtus ochrogaster GCF_000317375.1_MicOch1.0 SAMN00727831 PRJNA72443 2012-12-07
77 Przewalski's horse Equus przewalskii GCF_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05
78 puma Puma concolor GCF_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19
79 rabbit Oryctolagus cuniculus GCF_000003625.3_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20
80 red fox Vulpes vulpes GCF_003160815.1_VulVul2.2 SAMN06553695 PRJNA378561 2018-05-25
81 woodland thicket rat Grammomys surdaster GCF_004785775.1_NIH_TR_1.0 SAMN11172698 PRJNA526040 2019-04-12
82 Ryukyu mouse Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28
83 sea otter Enhydra lutris kenyoni GCF_002288905.1_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11
84 Rambouillet sheep Ovis aries GCF_002742125.1_Oar_rambouillet_v1.0 SAMEA104496890 PRJNA414087 2017-11-02
85 shrew mouse Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1 SAMEA3367645 PRJEB14896 2017-04-28
86 small Madagascar hedgehog Echinops telfairi GCF_000313985.2_ASM31398v2 SAMN00216137 PRJNA12590 2019-07-15
87 southern multimammate mouse Mastomys coucha GCF_008632895.1_UCSF_Mcou_1 SAMN07635206 PRJNA406979 2019-09-24
88 southern white rhinoceros Ceratotherium simum simum GCF_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31
89 sperm whale Physeter catodon GCF_002837175.2_ASM283717v2 SAMN07836523 PRJNA411766 2019-03-08
90 star-nosed mole Condylura cristata GCF_000260355.1_ConCri1.0 SAMN00727830 PRJNA72447 2012-05-01
91 Steller sea lion Eumetopias jubatus GCF_004028035.1_ASM402803v1 SAMN09402722 PRJNA475770 2019-01-15
92 Sunda flying lemur Galeopterus variegatus GCF_000696425.1_G_variegatus-3.0.2 SAMN01758971 PRJNA20511 2014-06-05
93 Tasmanian devil Sarcophilus harrisii GCF_902635505.1_mSarHar1.11 SAMEA6099886 PRJEB35073 2019-11-07
94 thirteen-lined ground squirrel Ictidomys tridecemlineatus GCF_000236235.1_SpeTri2.0 SAMN00210855 PRJNA61725 2011-11-29
95 Upper Galilee mountains blind mole rat Nannospalax galili GCF_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05
96 water buffalo Bubalus bubalis GCF_003121395.1_ASM312139v1 SAMN08640746 PRJNA437177 2018-05-14
97 Weddell seal Leptonychotes weddellii GCF_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29
98 western European hedgehog Erinaceus europaeus GCF_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19
99 white-footed mouse Peromyscus leucopus GCF_004664715.1_Pero_0.1 SAMN03488028 PRJNA281425 2019-04-05
100 white-tailed deer Odocoileus virginianus texanus GCF_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20
101 Wild Bactrian camel Camelus ferus GCF_000311805.1_CB1 SAMN01910617 PRJNA76177 2013-07-30
102 wild yak Bos mutus GCF_000298355.1_BosGru_v2.0 SAMN00744358 PRJNA74739 2013-01-09
103 Yangtze finless porpoise Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.1_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03
104 Yangtze River dolphin Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31
105 yellow-bellied marmot Marmota flaviventris GCF_003676075.1_ASM367607v1 SAMN10078668 PRJNA491472 2018-10-22
106 zebu cattle Bos indicus GCF_000247795.1_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25

Additional hubs with collections of assemblies
Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates