Mammals Genomes assembly hubs

Assemblies from NCBI/Genbank/Refseq sources, subset of mammals only.

How to view the hub

Options:

  1. The links to the genome browser in the table below will attach that one specific assembly to the genome browser. This is most likely what you want. Alternatively, the entire set of assemblies can be attached as one group to the genome browser with the following links depending upon which of our mirror site browsers you prefer to use:
    attach all assemblies to selected site:   genome.ucsc.edu   genome-euro.ucsc.edu   genome-asia.ucsc.edu
  2. To manually attach all the assemblies in this hub to genome browsers that are not one of the three UCSC mirror sites:
    1. From the blue navigation bar, go to My Data -> Track Hubs
    2. Then select the My Hubs tab and enter this URL into the textbox:
      https://hgdownload.soe.ucsc.edu/hubs/mammals/hub.txt
    3. Once you have added the URL to the entry form, press the Add Hub button to add the hub.

After adding the hub, you will be redirected to the gateway page. The genome assemblies can be selected from the Mammals Hub Assembly dropdown menu. Instead of adding all the assemblies in one collected group, use the individual view in browser in the table below.

See also: assembly statisticstrack statistics <== additional information for these assemblies.


Data resource links

NOTE: Click on the column headers to sort the table by that column

The common name and view in browser will attach only that single assembly to the genome browser.
The scientific name and data download link provides access to the files for that one assembly hub.
The other links provide access to NCBI resources for these assemblies.
count common name and
view in browser
scientific name
and data download
NCBI assembly BioSample BioProject assembly date,
source link
1 aardvark (SDZICR_OR568_19922 2012 Broad) Orycteropus afer afer GCF_000298275.1_OryAfe1.0 SAMN00744890 PRJNA74587 2012-09-20
2 African grass rat (maternal 2020 VGP) Arvicanthis niloticus GCA_011750645.1_mArvNil1.mat SAMN12611849 PRJNA561936 2020-03-25
3 African grass rat (paternal 2020 VGP) Arvicanthis niloticus GCA_011762545.1_mArvNil1.pat SAMN12611849 PRJNA561935 2020-03-25
4 African grass rat (paternal X 2020 VGP) Arvicanthis niloticus GCF_011762505.1_mArvNil1.pat.X SAMN12611849 PRJNA608735 2020-03-27
5 African hunting dog Lycaon pictus GCA_001887905.1_LycPicSAfr1.0 SAMN04312208 PRJNA304992 2016-12-01
6 African savanna elephant (2009 refseq) Loxodonta africana GCF_000001905.1_Loxafr3.0 SAMN02953622 PRJNA12569 2009-07-15
7 agile gracile mouse opossum Gracilinanus agilis GCF_016433145.1_AgileGrace SAMN16807781 PRJNA565840 2021-01-06
8 alpaca (v3.2 Carlotta AHFN-0088 2019 Deakin U) Vicugna pacos GCF_000164845.4_VicPac3.2 SAMN01096418 PRJNA544883 2019-07-15
9 Alpine marmot (2019) Marmota marmota marmota GCF_001458135.2_marMar SAMEA3214822 PRJEB8272 2019-12-18
10 American beaver (Ward 2017 refseq) Castor canadensis GCF_001984765.1_C.can_genome_v1.0 SAMN06187566 PRJNA359140 2017-02-04
11 American bison (2014 refseq) Bison bison bison GCF_000754665.1_Bison_UMD1.0 SAMN02947321 PRJNA257088 2014-10-08
12 American black bear (UA15103 2021) Ursus americanus GCF_020975775.1_gsc_jax_bbear_1.0 SAMN22511336 PRJNA319796 2021-11-24
13 American mink (2018) Neogale vison GCA_900108605.1_NNQGG.v01 SAMEA4493372 PRJEB15663 2018-01-02
14 American mink (M4711 2021 Dalhousie U) Neogale vison GCF_020171115.1_ASM_NN_V1 SAMN19764019 PRJNA741394 2021-09-29
15 American pika 3.0 (2012 Broad refseq) Ochotona princeps GCF_000292845.1_OchPri3.0 SAMN00767999 PRJNA74593 2012-08-27
16 American pika 4.0 (UAM:Mamm:113957 2020) Ochotona princeps GCF_014633375.1_OchPri4.0 SAMN15664588 PRJNA649356 2020-09-21
17 Amur tiger (TaeGuk 2013 refseq) Panthera tigris altaica GCF_000464555.1_PanTig1.0 SAMN02086964 PRJNA182708 2013-09-06
18 Antarctic minke whale Balaenoptera bonaerensis GCA_000978805.1_ASM97880v1 SAMD00016608 PRJDB1465 2015-03-18
19 Antillean ghost-faced bat Mormoops blainvillei GCA_004026545.1_MorMeg_v1_BIUU SAMN07678133 PRJNA399472 2019-01-16
20 aoudad Ammotragus lervia GCA_002201775.1_ALER1.0 SAMN06233879 PRJNA438286 2017-06-20
21 Arabian camel (Drom800 2019 refseq) Camelus dromedarius GCF_000803125.2_CamDro3 SAMN03252735 PRJNA269274 2019-10-07
22 Arctic fox (Blue_001 2021 refseq) Vulpes lagopus GCF_018345385.1_ASM1834538v1 SAMN16815335 PRJNA678849 2021-05-12
23 Arctic ground squirrel Urocitellus parryii GCF_003426925.1_ASM342692v1 SAMN09469529 PRJNA477386 2018-08-24
24 Asian palm civet Paradoxurus hermaphroditus GCA_004024585.1_ParHer_v1_BIUU SAMN07678048 PRJNA399364 2019-01-15
25 Asiatic elephant (2022 VGP) Elephas maximus indicus GCF_024166365.1_mEleMax1_primary_haplotype SAMN29174328 PRJNA850184 2022-07-06
26 Asiatic tapir Tapirus indicus GCA_004024905.1_TapInd_v1_BIUU SAMN07678113 PRJNA399421 2019-01-15
27 ass (Dezhou 2021) Equus asinus GCF_016077325.2_ASM1607732v2 SAMN08939908 PRJNA431818 2021-10-14
28 ass (Maral har 2015 refseq) Equus asinus GCF_001305755.1_ASM130575v1 SAMN03010633 PRJNA259598 2015-10-02
29 Australian echidna Tachyglossus aculeatus GCF_015852505.1_mTacAcu1.pri SAMN12634963 PRJNA607237 2020-12-09
30 Bactrian camel (Alxa 2014 refseq) Camelus bactrianus GCF_000767855.1_Ca_bactrianus_MBC_1.0 SAMN02953968 PRJNA183605 2014-10-23
31 banded mongoose Mungos mungo GCA_004023785.1_MunMun_v1_BIUU SAMN07678097 PRJNA399406 2019-01-15
32 bank vole Myodes glareolus GCF_902806735.1_Bank_vole1_10x SAMEA5971946 PRJEB34572 2020-02-22
33 banner-tailed kangaroo rat Dipodomys spectabilis GCF_019054845.1_ASM1905484v1 SAMN19232064 PRJNA730493 2021-06-29
34 beluga whale (Cook Inlet, Alaska, USA DL-CIB17-05 2020) Delphinapterus leucas GCA_009917745.1_GSC_cook_1.0 SAMN12238539 PRJNA553680 2020-01-07
35 beluga whale (GAN/ISIS: 26980492/103006 v3 2019) Delphinapterus leucas GCF_002288925.2_ASM228892v3 SAMN06216270 PRJNA360851 2019-08-29
36 big brown bat Eptesicus fuscus GCF_000308155.1_EptFus1.0 SAMN00767986 PRJNA72449 2012-11-08
37 bighorn sheep Ovis canadensis GCA_004026945.1_OviCan_v1_BIUU SAMN07678102 PRJNA399410 2019-01-16
38 black flying fox Pteropus alecto GCF_000325575.1_ASM32557v1 SAMN01103203 PRJNA171993 2013-12-04
39 black rat Rattus rattus GCF_011064425.1_Rrattus_CSIRO_v1 SAMN12855339 PRJNA574245 2020-03-04
40 black-footed cat Felis nigripes GCA_004023925.1_FelNig_v1_BIUU SAMN07678084 PRJNA399394 2019-01-15
41 black-lipped pika Ochotona curzoniae GCF_017591425.1_NIBS_Ocur_1.0 SAMN13876228 PRJNA601872 2021-03-26
42 black rhinoceros (2021 VGP) Diceros bicornis minor GCA_020826845.1_mDicBic1.mat.cur SAMN22047685 PRJNA773944 2021-11-10
43 black rhinoceros (alt pseudohaplotype 2021 VGP) Diceros bicornis minor GCA_020826835.1_mDicBic1.pat.decon SAMN22047685 PRJNA773943 2021-11-10
44 black rhinoceros (BS38 2019 Broad) Diceros bicornis GCA_004027315.1_DicBicMic_v1_BIUU SAMN07678078 PRJNA399388 2019-01-16
45 Blainville's beaked whale ( 2022 VGP) Mesoplodon densirostris GCA_025265405.1_mMesDen1_primary_haplotype SAMN29828597 PRJNA873668 2022-09-19
46 blue whale (alt pseudohaplotype JJ_BM4_2016_0621 2019 VGP) Balaenoptera musculus GCA_008658375.1_mBalMus1_alternate SAMN12287136 PRJNA554523 2019-09-23
47 blue whale (JJ_BM4_2016_0621 v3 2020 VGP) Balaenoptera musculus GCF_009873245.2_mBalMus1.pri.v3 SAMN12287136 PRJNA554522 2020-10-02
48 bobcat (2022 UCLA) Lynx rufus GCF_022079265.1_mLynRuf1.p SAMN23391104 PRJNA782957 2022-02-08
49 boutu Inia geoffrensis GCA_004363515.1_IniGeo_v1_BIUU SAMN07678125 PRJNA399465 2019-03-22
50 Brandt's bat Myotis brandtii GCF_000412655.1_ASM41265v1 SAMN01801565 PRJNA178678 2013-06-28
51 Brazilian free-tailed bat Tadarida brasiliensis GCA_004025005.1_TadBra_v1_BIUU SAMN07678131 PRJNA399430 2019-01-15
52 Brazilian guinea pig Cavia aperea GCA_000688575.1_CavAp1.0 SAMN02252454 PRJNA212237 2014-01-21
53 Brazilian tapir Tapirus terrestris GCA_004025025.1_TapTer_v1_BIUU SAMN07678114 PRJNA399422 2019-01-15
54 brown bear (2022 WashU) Ursus arctos GCF_023065955.1_UrsArc1.0 SAMN25977855 PRJNA807323 2022-04-20
55 brown bear (GAN/ISIS:MIG12 v2 2018) Ursus arctos horribilis GCF_003584765.2_ASM358476v2 SAMN09907428 PRJNA487641 2018-09-20
56 brown-throated sloth Bradypus variegatus GCA_004027775.1_BraVar_v1_BIUU SAMN07678054 PRJNA399370 2019-01-16
57 California sea lion (alt pseudohaplotype 2019 VGP) Zalophus californianus GCA_009762295.1_mZalCal1.alt SAMN12368149 PRJNA559674 2019-12-17
58 California sea lion (LMU 2018 refseq) Zalophus californianus GCF_900631625.1_zalCal2.2 SAMEA5145493 PRJEB30031 2018-12-07
59 California sea lion (v2 2020 VGP) Zalophus californianus GCF_009762305.2_mZalCal1.pri.v2 SAMN12368149 PRJNA559673 2020-07-14
60 Canada lynx (alt pseudohaplotype LIC74 2019 VGP) Lynx canadensis GCA_007474575.1_mLynCan4_v1.alt SAMN09948483 PRJNA489108 2019-07-25
61 Canada lynx (LIC74 v2 2020 VGP) Lynx canadensis GCF_007474595.2_mLynCan4.pri.v2 SAMN09948483 PRJNA489107 2020-07-14
62 Cantor's roundleaf bat Hipposideros galeritus GCA_004027415.1_HipGal_v1_BIUU SAMN07678026 PRJNA399442 2019-01-16
63 Cape elephant shrew Elephantulus edwardii GCF_000299155.1_EleEdw1.0 SAMN00749966 PRJNA74589 2012-10-10
64 Cape golden mole (2012 Broad) Chrysochloris asiatica GCF_000296735.1_ChrAsi1.0 SAMN00744889 PRJNA74591 2012-09-19
65 Cape rock hyrax (US060 2019 Broad) Procavia capensis GCA_004026925.1_ProCapCap_v1_BIUU SAMN07678107 PRJNA399414 2019-01-16
66 capybara Hydrochoerus hydrochaeris GCA_004027455.1_HydHyd_v1_BIUU SAMN07678143 PRJNA399400 2019-01-16
67 cattle (Hereford L1 Dominette 01449 42190680 v3 2018 USDA) Bos taurus GCF_002263795.2_ARS-UCD1.3 SAMN03145444 PRJNA391427 2018-04-11
68 Chacoan peccary (BS20 v2 2019 Broad) Catagonus wagneri GCA_004024745.2_CatWag_v2_BIUU_UCD SAMN07678067 PRJNA399378 2019-07-15
69 cheetah (Rico 2018) Acinonyx jubatus GCF_003709585.1_Aci_jub_2 SAMN09699341 PRJNA482183 2018-10-22
70 Chinese hamster (17A/GY CHO 2020) Cricetulus griseus GCF_003668045.3_CriGri-PICRH-1.0 SAMN07140313 PRJNA389969 2020-06-11
71 Chinese hamster (CHO v1 2011 BGI) Cricetulus griseus GCF_000223135.1_CriGri_1.0 SAMN02981352 PRJNA69991 2011-08-23
72 Chinese hamster (CHO v2 2017 Eagle Genomics Ltd) Cricetulus griseus GCA_900186095.1_CHOK1S_HZDv1 SAMEA104116709 PRJEB21211 2017-06-30
73 Chinese pangolin (2020 Yunnan U) Manis pentadactyla GCF_014570555.1_YNU_ManPten_2.0 SAMN11464812 PRJNA529513 2020-09-15
74 Chinese pangolin (MPE899 2014 WashU) Manis pentadactyla GCA_000738955.1_M_pentadactyla-1.1.1 SAMN01943338 PRJNA20331 2014-08-11
75 Chinese rufous horseshoe bat Rhinolophus sinicus GCA_001888835.1_ASM188883v1 SAMN04038064 PRJNA294852 2016-12-04
76 Chinese tree shrew Tupaia chinensis GCF_000334495.1_TupChi_1.0 SAMN01084043 PRJNA169406 2013-01-31
77 chiru Pantholops hodgsonii GCA_000400835.1_PHO1.0 SAMN00990743 PRJNA72465 2013-05-28
78 common bottlenose dolphin (paternal 2020 VGP) Tursiops truncatus GCA_011762515.1_mTurTru1.pat SAMN12326775 PRJNA561884 2020-03-25
79 common bottlenose dolphin (maternal 2020 VGP) Tursiops truncatus GCA_011762535.1_mTurTru1.mat SAMN12326775 PRJNA561885 2020-03-25
80 common bottlenose dolphin (maternal Y refseq 2020 VGP) Tursiops truncatus GCF_011762595.1_mTurTru1.mat.Y SAMN12326775 PRJNA608726 2020-03-27
81 common bottlenose dolphin (MMES2002162SC 2016 refseq) Tursiops truncatus GCF_001922835.1_NIST_Tur_tru_v1 SAMN06114300 PRJNA356464 2016-12-28
82 common brushtail (alt pseudohaplotype 2020 VGP) Trichosurus vulpecula GCA_011100645.1_mTriVul1.alt SAMN12629507 PRJNA562013 2020-03-09
83 common brushtail (refseq 2020 VGP) Trichosurus vulpecula GCF_011100635.1_mTriVul1.pri SAMN12629507 PRJNA562014 2020-03-10
84 common pipistrelle (2020 VGP) Pipistrellus pipistrellus GCA_903992545.1_mPipPip1.1 SAMEA994724 PRJEB39564 2020-08-06
85 common pipistrelle (Broad 2019) Pipistrellus pipistrellus GCA_004026625.1_PipPip_v1_BIUU SAMN07678120 PRJNA399427 2019-01-16
86 common vampire bat (v3 DRU21DN04 2018) Desmodus rotundus GCF_002940915.2_ASM294091v3 SAMN07783852 PRJNA414273 2018-02-23
87 common warthog (WHEZ1 2021) Phacochoerus africanus GCF_016906955.1_ROS_Pafr_v1 SAMN15809474 PRJNA656957 2021-02-19
88 common wombat Vombatus ursinus GCF_900497805.2_bare-nosed_wombat_genome_assembly SAMEA4791334 PRJEB27783 2018-12-10
89 creeping vole Microtus oregoni GCF_018167655.1_Mior012 SAMN18478481 PRJNA505851 2021-04-26
90 crested porcupine Hystrix cristata GCA_004026905.1_HysCri_v1_BIUU SAMN07678090 PRJNA399401 2019-01-16
91 Cuvier's beaked whale Ziphius cavirostris GCA_004364475.1_ZipCav_v1_BIUU SAMN07678128 PRJNA399469 2019-03-22
92 Damara mole-rat DMR 1.0 (2014 BGI) Fukomys damarensis GCF_000743615.1_DMR_v1.0 SAMN02339281 PRJNA190641 2014-09-04
93 Damara mole-rat DMR 1.0 HiC (2020 DNA Zoo) Fukomys damarensis GCF_012274545.1_DMR_v1.0_HiC SAMN10973724 PRJNA604608 2020-04-13
94 dassie-rat Petromus typicus GCA_004026965.1_PetTyp_v1_BIUU SAMN07678021 PRJNA399347 2019-01-16
95 Daurian ground squirrel Spermophilus dauricus GCA_002406435.1_ASM240643v1 SAMN07711139 PRJNA215874 2017-09-28
96 David's myotis bat Myotis davidii GCF_000327345.1_ASM32734v1 SAMN01103204 PRJNA171994 2012-12-20
97 degu (3935 2012 refseq) Octodon degus GCF_000260255.1_OctDeg1.0 SAMN00769067 PRJNA74595 2012-05-01
98 Desmarest's hutia Capromys pilorides GCA_004027915.1_CapPil_v1_BIUU SAMN07678066 PRJNA399377 2019-01-16
99 dingo (2020 Alpine COOINDA U.NSW) Canis lupus dingo GCF_012295265.1_UNSW_AlpineDingo_1.0 SAMN14395261 PRJNA613141 2020-04-15
100 dingo (Sandy 2020 James Cook U) Canis lupus dingo GCF_003254725.2_ASM325472v2 SAMN09397198 PRJNA475652 2020-09-11
101 dog (boxer Tasha 2011) Canis lupus familiaris GCF_000002285.3_CanFam3.1 SAMN02953603 PRJNA13179 2011-11-02
102 dog (boxer Tasha 2020) Canis lupus familiaris GCF_000002285.5_Dog10K_Boxer_Tasha SAMN02953603 PRJNA13179 2020-10-06
103 dog (German shepard Mischka 2020) Canis lupus familiaris GCF_011100685.1_UU_Cfam_GSD_1.0 SAMN13230619 PRJNA587469 2020-03-10
104 dog (labrador) Canis lupus familiaris GCF_014441545.1_ROS_Cfam_1.0 SAMN14478636 PRJNA615959 2020-09-03
105 domestic cat (Abyssinian Cinnamon 2017 WashU) Felis catus GCF_000181335.3_Felis_catus_9.0 SAMN02953640 PRJNA16726 2017-11-20
106 domestic cat (Fca126 2021 Texas A&M U) Felis catus GCF_018350175.1_F.catus_Fca126_mat1.0 SAMN19729387 PRJNA684600 2021-05-13
107 domestic ferret (JIRA1106 JCVI 2020) Mustela putorius furo GCF_011764305.1_ASM1176430v1.1 SAMN13896405 PRJNA580247 2020-03-27
108 domestic ferret (Sable 2011 Broad) Mustela putorius furo GCA_000239315.1_MusPutFurMale1.0 SAMN00761641 PRJNA78213 2011-12-21
109 domestic guinea pig (2N 2008 refseq) Cavia porcellus GCF_000151735.1_Cavpor3.0 SAMN02981223 PRJNA12583 2008-03-03
110 dwarf mongoose Helogale parvula GCA_004023845.1_HelPar_v1_BIUU SAMN07678086 PRJNA399396 2019-01-15
111 eastern mole Scalopus aquaticus GCA_004024925.1_ScaAqu_v1_BIUU SAMN07678045 PRJNA399361 2019-01-15
112 eastern quoll Dasyurus viverrinus GCA_020854095.1_UniMelb_DasViv_v1.0 SAMN21032600 PRJNA758704 2021-11-12
113 Egyptian rousette (1219 2016 Boston U) Rousettus aegyptiacus GCF_001466805.2_Raegyp2.0 SAMN04287759 PRJNA303181 2016-03-17
114 Egyptian rousette (2020 VGP) Rousettus aegyptiacus GCF_014176215.1_mRouAeg1.p SAMN14734550 PRJNA628585 2020-08-07
115 Egyptian spiny mouse Acomys cahirinus GCA_004027535.1_AcoCah_v1_BIUU SAMN07678032 PRJNA399339 2019-01-16
116 elk (wapiti) Cervus canadensis GCF_019320065.1_ASM1932006v1 SAMN15814149 PRJNA657053 2021-07-26
117 ermine (alt pseudohaplotype 2020 VGP) Mustela erminea GCA_009829165.1_mMusErm1.alt SAMN12611999 PRJNA561930 2020-01-03
118 ermine (2020 VGP) Mustela erminea GCF_009829155.1_mMusErm1.Pri SAMN12611999 PRJNA561931 2020-01-03
119 Eurasian badger (2021) Meles meles GCF_922984935.1_mMelMel3.1_paternal_haplotype SAMEA7524400 PRJEB49353 2021-12-19
120 Eurasian badger (2021 VGP) Meles meles GCA_922990625.1_mMelMel3.1_maternal_haplotype_uncurated SAMEA7524400 PRJEB49352 2021-12-18
121 Eurasian red squirrel (alt pseudohaplotype 2019 VGP) Sciurus vulgaris GCA_902685485.1_mSciVul1.1_alternate_haplotype SAMEA994733 PRJEB35379 2019-11-26
122 Eurasian red squirrel (2019 VGP) Sciurus vulgaris GCA_902686455.1_mSciVul1.1 SAMEA994733 PRJEB35380 2019-11-26
123 Eurasian river otter Lutra lutra GCF_902655055.1_mLutLut1.2 SAMEA994731 PRJEB35339 2020-07-31
124 Eurasian water vole (v2 2021) Arvicola amphibius GCF_903992535.2_mArvAmp1.2 SAMEA994740 PRJEB39550 2021-05-15
125 European shrew Sorex araneus GCF_000181275.1_SorAra2.0 SAMN00210854 PRJNA13689 2012-08-27
126 European woodmouse (2022 VGP) Apodemus sylvaticus GCA_947179515.1_mApoSyl1.1 SAMEA7702024 PRJEB56948 2022-10-28
127 fat dormouse Glis glis GCA_004027185.1_GliGli_v1_BIUU SAMN07678015 PRJNA399435 2019-01-16
128 fat sand rat Psammomys obesus GCA_002215935.1_ASM221593v1 SAMN06061930 PRJNA355058 2017-07-07
129 fishing cat (Anna 2022 U Missouri) Prionailurus viverrinus GCF_022837055.1_UM_Priviv_1.0 SAMN26586088 PRJNA815338 2022-04-08
130 Florida manatee (Lorelei 2012 refseq) Trichechus manatus latirostris GCF_000243295.1_TriManLat1.0 SAMN00632092 PRJNA68243 2012-01-23
131 fossa Cryptoprocta ferox GCA_004023885.1_CryFer_v1_BIUU SAMN07678074 PRJNA399384 2019-01-15
132 Gambian giant pouched rat Cricetomys gambianus GCA_004027575.1_CriGam_v1_BIUU SAMN07678025 PRJNA399436 2019-01-16
133 gayal (CVASU_BF_001 2021) Bos frontalis GCA_017311355.1_CVASU_Gayal_001 SAMN16965583 PRJNA655910 2021-03-09
134 gayal (Nagaland 2019) Bos frontalis GCA_007844835.1_NRC_Mithun_1 SAMN02689702 PRJNA241403 2019-08-05
135 Geoffroy's cat Leopardus geoffroyi GCF_018350155.1_O.geoffroyi_Oge1_pat1.0 SAMN19729386 PRJNA684599 2021-05-13
136 giant anteater Myrmecophaga tridactyla GCA_004026745.1_MyrTri_v1_BIUU SAMN07678098 PRJNA399407 2019-01-16
137 giant otter Pteronura brasiliensis GCA_004024605.1_PteBra_v1_BIUU SAMN07678049 PRJNA399365 2019-01-15
138 giant panda (Jingjing v3 2020) Ailuropoda melanoleuca GCF_002007445.2_ASM200744v3 SAMN04193337 PRJNA588422 2020-04-20
139 goat (v2 San Clemente 2016 USDA) Capra hircus GCF_001704415.2_ARS1.2 SAMN03863711 PRJNA290100 2016-08-24
140 Gobi jerboa Orientallactaga bullata GCA_004027895.1_AllBul_v1_BIUU SAMN07678035 PRJNA399447 2019-01-16
141 golden hamster (Baylor 2021) Mesocricetus auratus GCF_017639785.1_BCM_Maur_2.0 SAMN18096087 PRJNA705675 2021-03-30
142 golden hamster (Broad 2013 refseq) Mesocricetus auratus GCF_000349665.1_MesAur1.0 SAMN00769068 PRJNA77669 2013-03-29
143 golden spiny mouse (2020 VGP) Acomys russatus GCF_903995435.1_mAcoRus1.1 SAMEA104026431 PRJEB39768 2020-08-21
144 gracile shrew mole Uropsilus gracilis GCA_004024945.1_UroGra_v1_BIUU SAMN07678046 PRJNA399362 2019-01-15
145 gray seal Halichoerus grypus GCF_012393455.1_Tufts_HGry_1.1 SAMN13022322 PRJNA577240 2020-04-15
146 gray short-tailed opossum Monodelphis domestica GCF_000002295.2_MonDom5 SAMN02953611 PRJNA12561 2007-01-25
147 gray squirrel Sciurus carolinensis GCF_902686445.1_mSciCar1.2 SAMEA994726 PRJEB35386 2020-07-31
148 gray wolf (2021 VGP) Canis lupus GCA_905319855.2_mCanLor1.2 SAMEA7532739 PRJEB43200 2021-03-26
149 great roundleaf bat (ML-2016 2016 refseq) Hipposideros armiger GCF_001890085.1_ASM189008v1 SAMN03177460 PRJNA267039 2016-12-06
150 greater bulldog bat Noctilio leporinus GCA_004026585.1_NocLep_v1_BIUU SAMN07678134 PRJNA399473 2019-01-16
151 Greater cane rat Thryonomys swinderianus GCA_004025085.1_ThrSwi_v1_BIUU SAMN07678129 PRJNA399470 2019-01-15
152 greater horseshoe bat alt pseudohaplotype (MPI-CBG 2019 VGP) Rhinolophus ferrumequinum GCA_004115295.1_mRhiFer1_v1.h SAMN09948510 PRJNA489105 2019-01-28
153 greater horseshoe bat (v2 MPI-CBG 2019 VGP) Rhinolophus ferrumequinum GCF_004115265.2_mRhiFer1_v1.p SAMN09948510 PRJNA489106 2019-05-16
154 greater mouse-eared bat (2020 Bat1K) Myotis myotis GCF_014108235.1_mMyoMyo1.p SAMN14734277 PRJNA628559 2020-08-07
155 greater spear-nosed bat (2021 Texas Tech U) Phyllostomus hastatus GCF_019186645.2_TTU_PhHast_1.1 SAMN19371543 PRJNA733208 2021-07-09
156 grey whale Eschrichtius robustus GCA_004363415.1_EscRob_v1_BIUU SAMN07678123 PRJNA399463 2019-03-22
157 hairy big-eared bat (US037 2019 Broad) Micronycteris hirsuta GCA_004026765.1_MicHir_v1_BIUU SAMN07678146 PRJNA399354 2019-01-16
158 harbor porpoise Phocoena phocoena GCA_004363495.1_PhoPho_v1_BIUU SAMN07678060 PRJNA399454 2019-03-22
159 harbor seal Phoca vitulina GCF_004348235.1_GSC_HSeal_1.0 SAMN10150265 PRJNA494181 2019-02-11
160 Hawaiian monk seal (2021 Johns Hopkins U) Neomonachus schauinslandi GCF_002201575.2_ASM220157v2 SAMN06841387 PRJNA384558 2021-10-20
161 hazel dormouse Muscardinus avellanarius GCA_004027005.1_MusAve_v1_BIUU SAMN07678014 PRJNA399340 2019-01-16
162 hippopotamus (HIP001 2018) Hippopotamus amphibius GCA_002995585.1_ASM299558v1 SAMN07206988 PRJNA389773 2018-03-13
163 hippopotamus (BS01 2019 Broad) Hippopotamus amphibius GCA_004027065.1_HipAmp_v1_BIUU SAMN07678089 PRJNA399399 2019-01-16
164 hirola (BS46 2019 Broad) Beatragus hunteri GCA_004027495.1_BeaHun_v1_BIUU SAMN07678065 PRJNA399375 2019-01-16
165 Hispaniolan solenodon Solenodon paradoxus GCA_004363575.1_SolPar_v1_BIUU SAMN07678062 PRJNA399371 2019-03-22
166 hispid cotton rat Sigmodon hispidus GCA_004025045.1_SigHis_v1_BIUU SAMN07678138 PRJNA399433 2019-01-15
167 Hoffmann's two-fingered sloth Choloepus hoffmanni GCA_000164785.2_C_hoffmanni-2.0.1 SAMN02146716 PRJNA30809 2014-09-30
168 hog-nosed bat Craseonycteris thonglongyai GCA_004027555.1_CraTho_v1_BIUU SAMN07678039 PRJNA399445 2019-01-16
169 Honduran yellow-shouldered bat Sturnira hondurensis GCF_014824575.1_WHU_Shon_v2 SAMN12282880 PRJNA554734 2020-09-30
170 horse (Twilight 2018) Equus caballus GCF_002863925.1_EquCab3.0 SAMN02953672 PRJNA421018 2018-01-05
171 house mouse 129S1_SvImJ Mus musculus GCA_001624185.1_129S1_SvImJ_v1 SAMN04489811 PRJNA310854 2016-04-26
172 house mouse AKR_J Mus musculus GCA_001624295.1_AKR_J_v1 SAMN04489815 PRJNA310854 2016-04-26
173 house mouse A_J Mus musculus GCA_001624215.1_A_J_v1 SAMN04489813 PRJNA310854 2016-04-26
174 house mouse BALB_cJ Mus musculus GCA_001632525.1_BALB_cJ_v1 SAMN04489816 PRJNA310854 2016-05-09
175 house mouse C3H_HeJ Mus musculus GCA_001632575.1_C3H_HeJ_v1 SAMN04489818 PRJNA310854 2016-05-09
176 house mouse C57BL/6J 2020 GRC Mus musculus GCF_000001635.27_GRCm39 n/a PRJNA20689 2020-06-24
177 house mouse C57BL_6NJ Mus musculus GCA_001632555.1_C57BL_6NJ_v1 SAMN04489821 PRJNA310854 2016-05-09
178 house mouse CAST_EiJ Mus musculus castaneus GCA_001624445.1_CAST_EiJ_v1 SAMN04489822 PRJNA310854 2016-04-26
179 house mouse CBA_J Mus musculus GCA_001624475.1_CBA_J_v1 SAMN04489823 PRJNA310854 2016-04-26
180 house mouse DBA_2J Mus musculus GCA_001624505.1_DBA_2J_v1 SAMN04489824 PRJNA310854 2016-04-26
181 house mouse FVB_NJ Mus musculus GCA_001624535.1_FVB_NJ_v1 SAMN04489825 PRJNA310854 2016-04-26
182 house mouse LP_J Mus musculus GCA_001632615.1_LP_J_v1 SAMN04489826 PRJNA310854 2016-05-09
183 house mouse NOD_ShiLtJ Mus musculus GCA_001624675.1_NOD_ShiLtJ_v1 SAMN04489827 PRJNA310854 2016-04-26
184 house mouse NZO_HlLtJ Mus musculus GCA_001624745.1_NZO_HlLtJ_v1 SAMN04489828 PRJNA310854 2016-04-26
185 house mouse PWK_PhJ Mus musculus musculus GCA_001624775.1_PWK_PhJ_v1 SAMN04489829 PRJNA310854 2016-04-26
186 house mouse WSB_EiJ Mus musculus domesticus GCA_001624835.1_WSB_EiJ_v1 SAMN04489831 PRJNA310854 2016-04-26
187 hybrid cattle (Angus x Brahman F1 hybrid 2018 VGP) Bos indicus x Bos taurus GCA_003369685.2_UOA_Angus_1 SAMN08473802 PRJNA432857 2018-11-30
188 hybrid cattle (Angus x Brahman F1 hybrid 2018 VGP) Bos indicus x Bos taurus GCF_003369695.1_UOA_Brahman_1 SAMN08473802 PRJNA432857 2018-11-30
189 Iberian mole Talpa occidentalis GCF_014898055.1_MPIMG_talOcc4 SAMN10160270 PRJNA494291 2020-10-19
190 Indian false vampire Megaderma lyra GCA_004026885.1_MegLyr_v1_BIUU SAMN07678029 PRJNA399353 2019-01-16
191 Indian flying fox Pteropus giganteus GCF_902729225.1_Ma_sr-lr_union100 SAMEA5634742 PRJEB32728 2020-04-15
192 Indochinese shrew (US011 2019 Broad) Crocidura indochinensis GCA_004027635.1_CroInd_v1_BIUU SAMN07678044 PRJNA399360 2019-01-16
193 Indus River dolphin Platanista minor GCA_004363435.1_PlaMin_v1_BIUU SAMN07678149 PRJNA399467 2019-03-22
194 jaguar Panthera onca GCA_004023805.1_PanOnc_v1_BIUU SAMN07678103 PRJNA399411 2019-01-15
195 jaguarundi Puma yagouaroundi GCF_014898765.1_PumYag SAMN14930875 PRJNA633021 2020-10-20
196 Jamaican fruit-eating bat (1a 2020 Wuhan U) Artibeus jamaicensis GCF_014825515.1_WHU_Ajam_v2 SAMN12273914 PRJNA554589 2020-09-30
197 Java mouse-deer (US108 2019 Broad) Tragulus javanicus GCA_004024965.1_TraJav_v1_BIUU SAMN07678116 PRJNA399456 2019-01-15
198 killer whale (Morgan 2013) Orcinus orca GCF_000331955.2_Oorc_1.1 SAMN01180276 PRJNA167475 2013-01-31
199 killer whale (2022 VGP) Orcinus orca GCF_937001465.1_mOrcOrc1.1 SAMEA8800229 PRJEB52131 2022-05-03
200 koala Phascolarctos cinereus GCF_002099425.1_phaCin_unsw_v4.1 SAMN06198159 PRJNA359763 2017-04-18
201 Kuhl's pipistrelle (2020 VGP) Pipistrellus kuhlii GCF_014108245.1_mPipKuh1.p SAMN14734388 PRJNA628567 2020-08-07
202 large flying fox Pteropus vampyrus GCF_000151845.1_Pvam_2.0 SAMN02894360 PRJNA20325 2014-12-05
203 large tree shrew Tupaia tana GCA_004365275.1_TupTan_v1_BIUU SAMN07678117 PRJNA399462 2019-03-22
204 leopard (Maewha 2016 refseq) Panthera pardus GCF_001857705.1_PanPar1.0 SAMN04347630 PRJNA306701 2016-11-16
205 leopard cat Prionailurus bengalensis GCF_016509475.1_Fcat_Pben_1.1_paternal_pri SAMN16486448 PRJNA682572 2021-01-06
206 lesser Egyptian jerboa (JJ0015 2012 refseq) Jaculus jaculus GCF_000280705.1_JacJac1.0 SAMN00728442 PRJNA72445 2012-07-30
207 lesser Egyptian jerboa (alt pseudohaplotype 2021 VGP) Jaculus jaculus GCA_020740715.1_mJacJac1.pat.decon SAMN20391724 PRJNA773798 2021-11-03
208 lesser Egyptian jerboa (2021 VGP) Jaculus jaculus GCF_020740685.1_mJacJac1.mat.Y.cur SAMN20391724 PRJNA773797 2021-11-04
209 lesser panda Ailurus styani GCA_002007465.1_ASM200746v1 SAMN04169031 PRJNA298932 2017-02-28
210 lion Panthera leo GCF_018350215.1_P.leo_Ple1_pat1.1 SAMN17054329 PRJNA684340 2021-05-13
211 little brown bat Myotis lucifugus GCF_000147115.1_Myoluc2.0 SAMN02953645 PRJNA16951 2010-09-14
212 little tube-nosed bat Murina aurata feae GCA_004026665.1_MurFea_v1_BIUU SAMN07678148 PRJNA399367 2019-01-16
213 long-finned pilot whale Globicephala melas GCF_006547405.1_ASM654740v1 SAMN11083132 PRJNA525909 2019-07-01
214 long-tailed chinchilla Chinchilla lanigera GCF_000276665.1_ChiLan1.0 SAMN00632093 PRJNA68239 2012-08-28
215 long-tongued fruit bat (US102 2019 Broad) Macroglossus sobrinus GCA_004027375.1_MacSob_v1_BIUU SAMN07678028 PRJNA399443 2019-01-16
216 Lowland paca Cuniculus paca GCA_004365215.1_CunPac_v1_BIUU SAMN07678075 PRJNA399385 2019-03-22
217 Malayan pangolin (MP_PG03-UM 2016 refseq) Manis javanica GCF_001685135.1_ManJav1.0 SAMN02935387 PRJNA256023 2016-07-14
218 Malayan pangolin YNU ManJav 2.0 Manis javanica GCF_014570535.1_YNU_ManJav_2.0 SAMN11464811 PRJNA529512 2020-09-15
219 Masai giraffe (MA1 2016 Penn St) Giraffa tippelskirchi GCA_001651235.1_ASM165123v1 SAMN04526126 PRJNA313910 2016-05-20
220 meadow jumping mouse Zapus hudsonius GCA_004024765.1_ZapHud_v1_BIUU SAMN07678139 PRJNA399434 2019-01-15
221 meerkat (VVHF042 2019 DNA Zoo) Suricata suricatta GCF_006229205.1_meerkat_22Aug2017_6uvM2_HiC SAMN11840572 PRJNA540846 2019-07-03
222 minke whale (2013 refseq) Balaenoptera acutorostrata scammoni GCF_000493695.1_BalAcu1.0 SAMN02192642 PRJNA72723 2013-10-31
223 Mongolian gerbil (243 2017 Lucigen Corp.) Meriones unguiculatus GCF_002204375.1_MunDraft-v1.0 SAMN06897401 PRJNA385619 2017-06-21
224 Mongolian gerbil (EAM2014 2019 BGI) Meriones unguiculatus GCA_008131255.1_ASM813125v1 SAMN11651137 PRJNA543000 2019-08-30
225 monito del monte Dromiciops gliroides GCF_019393635.1_mDroGli1.pri SAMN18857598 PRJNA728141 2021-08-03
226 Montane guinea pig Cavia tschudii GCA_004027695.1_CavTsc_v1_BIUU SAMN07678017 PRJNA399343 2019-01-16
227 mountain beaver Aplodontia rufa GCA_004027875.1_AplRuf_v1_BIUU SAMN07678037 PRJNA399342 2019-01-16
228 muskrat Ondatra zibethicus GCA_004026605.1_OndZib_v1_BIUU SAMN07678059 PRJNA399451 2019-01-16
229 naked mole-rat (NMR 29 2012 refseq) Heterocephalus glaber GCF_000247695.1_HetGla_female_1.0 SAMN00714537 PRJNA72441 2012-02-17
230 naked mole-rat (MEF-2018 2020) Heterocephalus glaber GCA_014060925.1_Heter_glaber.v1.7_hic_pac SAMN10409247 PRJNA505051 2020-08-04
231 narwhal (Baffin Bay 2019) Monodon monoceros GCF_005190385.1_NGI_Narwhal_1 SAMN10872456 PRJNA520934 2019-05-06
232 Natal long-fingered bat Miniopterus natalensis GCF_001595765.1_Mnat.v1 SAMN03652541 PRJNA283550 2016-03-22
233 neotropical fruit bat Sturnira hondurensis GCF_014824575.2_WHU_Shon_v2.1 SAMN12282880 PRJNA554734 2020-09-30
234 Nilgiri tahr Hemitragus hylocrius GCA_004026825.1_HemHyl_v1_BIUU SAMN07678087 PRJNA399397 2019-01-16
235 nine-banded armadillo (v3.2 3-136 2012 Baylor) Dasypus novemcinctus GCF_000208655.3_Dasnov3.2 SAMN02953623 PRJNA12594 2012-01-06
236 North Pacific right whale Eubalaena japonica GCA_004363455.1_EubJap_v1_BIUU SAMN07678124 PRJNA399464 2019-03-22
237 Northern American river otter Lontra canadensis GCF_010015895.1_GSC_riverotter_1.0 SAMN13049247 PRJNA578111 2020-01-27
238 Northern elephant seal (2021 DNA Zoo) Mirounga angustirostris GCF_021288785.1_ASM2128878v2 SAMN13072016 PRJNA512907 2021-12-26
239 Northern elephant seal (BS05 2019 Broad) Mirounga angustirostris GCA_004023865.1_MirAng_v1_BIUU SAMN07678016 PRJNA399341 2019-01-15
240 northern fur seal Callorhinus ursinus GCF_003265705.1_ASM326570v1 SAMN09379881 PRJNA475116 2018-06-26
241 northern gundi Ctenodactylus gundi GCA_004027205.1_CteGun_v1_BIUU SAMN07678018 PRJNA399344 2019-01-16
242 Northern mole vole Ellobius talpinus GCA_001685095.1_ETalpinus_0.1 SAMN04317029 PRJNA305123 2016-07-14
243 northern white rhinoceros Ceratotherium simum cottoni GCA_004027795.1_CerCot_v1_BIUU SAMN07678069 PRJNA399457 2019-01-16
244 Norway rat BN7 haplotype Rattus norvegicus GCA_015244455.1_mRatBN7.1_alternate_haplotype SAMN16261960 PRJNA663241 2020-11-04
245 Norway rat BN7.2 Rattus norvegicus GCF_015227675.2_mRatBN7.2 SAMN16261960 PRJNA662791 2020-11-10
246 Norway rat celera Rattus norvegicus GCF_000002265.2_Rn_Celera SAMN03000701 PRJNA13999 2006-12-06
247 Norway rat Rnor6.0 Rattus norvegicus GCF_000001895.5_Rnor_6.0 SAMN02808228 PRJNA10629 2014-07-01
248 Norway rat SHR/Utx RGD_8142385 2022 Rattus norvegicus GCA_023515785.1_UTH_Rnor_SHR_Utx SAMN27519281 PRJNA825507 2022-05-25
249 Norway rat SHRSP/BppUtx 2022 Rattus norvegicus GCA_021556685.1_UTH_Rnor_SHRSP_BbbUtx_1.0 SAMN24538170 PRJNA793432 2022-01-24
250 Norway rat WKY/Bbb 2022 Rattus norvegicus GCA_023515805.1_UTH_Rnor_WKY_Bbb_1.0 SAMN27518707 PRJNA825508 2022-05-25
251 nutria Myocastor coypus GCA_004027025.1_MyoCoy_v1_BIUU SAMN07678020 PRJNA399346 2019-01-16
252 okapi Okapia johnstoni GCA_001660835.1_ASM166083v1 SAMN04526128 PRJNA313910 2016-06-08
253 Ord's kangaroo rat Dipodomys ordii GCF_000151885.1_Dord_2.0 SAMN02900551 PRJNA20385 2014-12-12
254 pacarana Dinomys branickii GCA_004027595.1_DinBra_v1_BIUU SAMN07678079 PRJNA399389 2019-01-16
255 Pacific pocket mouse (BS65 2019 Broad) Perognathus longimembris pacificus GCA_004363475.1_PerLonPac_v1_BIUU SAMN07678105 PRJNA399459 2019-03-22
256 Pacific pocket mouse (PPM17 2022 San Diego Zoo) Perognathus longimembris pacificus GCF_023159225.1_ASM2315922v1 SAMN26876106 PRJNA818714 2022-04-27
257 Pacific walrus Odobenus rosmarus divergens GCF_000321225.1_Oros_1.0 SAMN01180787 PRJNA167474 2013-01-16
258 Pacific white-sided dolphin Lagenorhynchus obliquidens GCF_003676395.1_ASM367639v1 SAMN09386610 PRJNA475306 2018-10-23
259 pale spear-nosed bat (alt pseudohaplotype MPI-MPIP 2019 VGP) Phyllostomus discolor GCA_004115245.1_mPhyDis1_v1.h SAMN09948786 PRJNA489142 2019-01-28
260 pale spear-nosed bat (MPI-MPIP v3 2020 VGP) Phyllostomus discolor GCF_004126475.2_mPhyDis1.pri.v3 SAMN09948786 PRJNA489141 2020-05-12
261 Pallas's mastiff bat Molossus molossus GCF_014108415.1_mMolMol1.p SAMN14734448 PRJNA628574 2020-08-07
262 Parnell's mustached bat Pteronotus parnellii GCA_000465405.1_ASM46540v1 SAMN02212709 PRJNA209408 2013-09-13
263 Patagonian cavy Dolichotis patagonum GCA_004027295.1_DolPat_v1_BIUU SAMN07678081 PRJNA399391 2019-01-16
264 Pere David's deer Elaphurus davidianus GCA_002443075.1_Milu1.0 SAMN03020601 PRJNA256236 2017-10-04
265 pig (Duroc) Sus scrofa GCF_000003025.6_Sscrofa11.1 SAMN02953785 PRJNA13421 2017-02-07
266 pig (USMARCv1) Sus scrofa GCA_002844635.1_USMARCv1.0 SAMN07325927 PRJNA392765 2017-12-20
267 plains zebra (Etosha38 2022 UCLA) Equus quagga GCF_021613505.1_UCLA_HA_Equagga_1.0 SAMN16526506 PRJNA785630 2022-01-31
268 platypus (alt pseudohaplotype Pmale09 2020 VGP) Ornithorhynchus anatinus GCA_004115175.2_mOrnAna1.alt.v3 SAMN08537700 PRJNA489115 2020-04-06
269 platypus (Pmale09 v4 2020 VGP) Ornithorhynchus anatinus GCF_004115215.2_mOrnAna1.pri.v4 SAMN08537700 PRJNA489114 2020-11-06
270 polar bear (Baiyulong BGI 2014 refseq) Ursus maritimus GCF_000687225.1_UrsMar_1.0 SAMN02729226 PRJNA210951 2014-05-09
271 polar bear (UCSC 2021) Ursus maritimus GCF_017311325.1_ASM1731132v1 SAMN10734297 PRJNA669153 2021-03-09
272 prairie deer mouse (Baylor 2013) Peromyscus maniculatus bairdii GCF_000500345.1_Pman_1.0 SAMN00848614 PRJNA53563 2013-12-03
273 prairie deer mouse (Harvard 2020) Peromyscus maniculatus bairdii GCF_003704035.1_HU_Pman_2.1.3 SAMN10150431 PRJNA494228 2020-09-17
274 prairie vole Microtus ochrogaster GCF_000317375.1_MicOch1.0 SAMN00727831 PRJNA72443 2012-12-07
275 pronghorn (PH2016 2021) Antilocapra americana GCA_021018645.1_ASM2101864v1 SAMN08712244 PRJNA438286 2021-12-01
276 Przewalski's horse (Burgud 2014 refseq) Equus przewalskii GCF_000696695.1_Burgud SAMN02808398 PRJNA200657 2014-06-05
277 puma (SC36_Marlon 2018 refseq) Puma concolor GCF_003327715.1_PumCon1.0 SAMN08662999 PRJNA437459 2018-07-19
278 punctate agouti Dasyprocta punctata GCA_004363535.1_DasPun_v1_BIUU SAMN07678076 PRJNA399386 2019-03-22
279 pygmy sperm whale Kogia breviceps GCA_004363705.1_KogBre_v1_BIUU SAMN07678126 PRJNA399466 2019-03-22
280 rabbit (New Zealand White 2021) Oryctolagus cuniculus GCA_009806435.2_UM_NZW_1.0 SAMN12179861 PRJNA274594 2021-02-04
281 rabbit (Thorbecke 2009 Broad refseq) Oryctolagus cuniculus GCF_000003625.3_OryCun2.0 SAMN02953624 PRJNA12819 2009-10-20
282 Rambouillet sheep (Baylor 2017) Ovis aries GCF_002742125.1_Oar_rambouillet_v1.0 SAMEA104496890 PRJNA414087 2017-11-02
283 Rambouillet sheep (U.Idaho 2021) Ovis aries GCF_016772045.1_ARS-UI_Ramb_v2.0 SAMN17575729 PRJNA675594 2021-02-03
284 ratel Mellivora capensis GCA_004024625.1_MelCap_v1_BIUU SAMN07678094 PRJNA399403 2019-01-15
285 red bat Lasiurus borealis GCA_004026805.1_LasBor_v1_BIUU SAMN07678027 PRJNA399352 2019-01-16
286 red deer Cervus elaphus GCF_910594005.1_mCerEla1.1 SAMEA7523520 PRJEB45838 2021-07-07
287 red fox Vulpes vulpes GCF_003160815.1_VulVul2.2 SAMN06553695 PRJNA378561 2018-05-25
288 reed vole (2020) Microtus fortis GCF_014885135.2_M_Fortis_MF-2015_v1.1 SAMN07276871 PRJNA391843 2020-10-13
289 reindeer Rangifer tarandus GCA_004026565.1_RanTarSib_v1_BIUU SAMN07678109 PRJNA399416 2019-01-16
290 Ryukyu mouse (2017 EBI refseq) Mus caroli GCF_900094665.1_CAROLI_EIJ_v1.1 SAMEA3367631 PRJEB14895 2017-04-28
291 Saanen dairy goat Capra hircus GCA_015443085.1_Saanen_v1 SAMN14408556 PRJNA613503 2020-11-16
292 saiga antelope Saiga tatarica GCA_004024985.1_SaiTat_v1_BIUU SAMN07678151 PRJNA399418 2019-01-15
293 Schreibers' long-fingered bat Miniopterus schreibersii GCA_004026525.1_MinSch_v1_BIUU SAMN07678147 PRJNA399366 2019-01-16
294 scimitar-horned oryx Oryx dammah GCF_014754425.2_SCBI_Odam_1.1 SAMN14518290 PRJNA622505 2020-09-25
295 Screaming hairy armadillo Chaetophractus vellerosus GCA_004027955.1_ChaVel_v1_BIUU SAMN07678071 PRJNA399381 2019-01-16
296 sea otter (GAN:26980312 2017 refseq) Enhydra lutris kenyoni GCF_002288905.1_ASM228890v2 SAMN07211055 PRJNA388419 2017-09-11
297 Seba's short-tailed bat Carollia perspicillata GCA_004027735.1_CarPer_v1_BIUU SAMN07678055 PRJNA399439 2019-01-16
298 sheep Ovis aries GCA_000298735.2_Oar_v4.0 SAMN00116405 PRJNA169880 2015-11-20
299 shrew mouse Mus pahari GCF_900095145.1_PAHARI_EIJ_v1.1 SAMEA3367645 PRJEB14896 2017-04-28
300 Siberian musk deer (BS20 2019 Broad) Moschus moschiferus GCA_004024705.1_MosMos_v1_BIUU SAMN07678096 PRJNA399405 2019-01-15
301 small Madagascar hedgehog Echinops telfairi GCF_000313985.2_ASM31398v2 SAMN00216137 PRJNA12590 2019-07-15
302 snow leopard (11264 2022) Panthera uncia GCF_023721935.1_Puncia_PCG_1.0 SAMN13911153 PRJNA602938 2022-06-16
303 snowshoe hare Lepus americanus GCA_004026855.1_LepAme_v1_BIUU SAMN07678042 PRJNA399359 2019-01-16
304 social tuco-tuco Ctenomys sociabilis GCA_004027165.1_CteSoc_v1_BIUU SAMN07678051 PRJNA399368 2019-01-16
305 South African ground squirrel Xerus inauris GCA_004024805.1_XerIna_v1_BIUU SAMN07678119 PRJNA399425 2019-01-15
306 southern elephant seal Mirounga leonina GCF_011800145.1_KU_Mleo_1.0 SAMN13282320 PRJNA587380 2020-03-31
307 southern grasshopper mouse (2020 VGP) Onychomys torridus GCF_903995425.1_mOncTor1.1 SAMEA104026389 PRJEB39770 2020-08-21
308 southern multimammate mouse Mastomys coucha GCF_008632895.1_UCSF_Mcou_1 SAMN07635206 PRJNA406979 2019-09-24
309 southern tamandua (2022 VGP) Tamandua tetradactyla GCA_023851605.1_mTamTet1.pri SAMN12612337 PRJNA561939 2022-06-22
310 southern tamandua (Broad 2019) Tamandua tetradactyla GCA_004025105.1_TamTet_v1_BIUU SAMN07678112 PRJNA399420 2019-01-15
311 southern three-banded armadillo Tolypeutes matacus GCA_004025125.1_TolMat_v1_BIUU SAMN07678115 PRJNA399423 2019-01-15
312 southern two-toed sloth (2020 VGP) Choloepus didactylus GCF_015220235.1_mChoDid1.pri SAMN12612024 PRJNA561937 2020-11-03
313 southern white rhinoceros (SDZICR_KB13650 2012 refseq) Ceratotherium simum simum GCF_000283155.1_CerSimSim1.0 SAMN00778988 PRJNA74583 2012-07-31
314 Sowerby's beaked whale Mesoplodon bidens GCA_004027085.1_MesBid_v1_BIUU SAMN07678145 PRJNA399476 2019-01-16
315 sperm whale Physeter catodon GCF_002837175.2_ASM283717v2 SAMN07836523 PRJNA411766 2019-03-08
316 star-nosed mole Condylura cristata GCF_000260355.1_ConCri1.0 SAMN00727830 PRJNA72447 2012-05-01
317 Steller sea lion Eumetopias jubatus GCF_004028035.1_ASM402803v1 SAMN09402722 PRJNA475770 2019-01-15
318 Stephens's kangaroo rat Dipodomys stephensi GCA_004024685.1_DipSte_v1_BIUU SAMN07678080 PRJNA399390 2019-01-15
319 steppe mouse (ZRU 2018) Mus spicilegus GCA_003336285.1_MUSP714 SAMN08141584 PRJNA421365 2018-07-23
320 straw-colored fruit bat Eidolon helvum GCA_000465285.1_ASM46528v1 SAMN02212690 PRJNA209406 2013-09-13
321 stripe-headed round-eared bat Tonatia saurophila GCA_004024845.1_TonSau_v1_BIUU SAMN07678031 PRJNA399356 2019-01-15
322 striped hyena (BS54 2019 Broad) Hyaena hyaena GCA_004023945.1_HyaHya_v1_BIUU SAMN07678047 PRJNA399363 2019-01-15
323 striped hyena (Hyena2069 2018 Potsdam U) Hyaena hyaena GCF_003009895.1_ASM300989v1 SAMN07212965 PRJNA390068 2018-03-19
324 Sumatran rhinoceros (Ipuh 2017) Dicerorhinus sumatrensis sumatrensis GCA_002844835.1_ASM284483v1 SAMN07833945 PRJNA415733 2017-12-19
325 Sunda flying lemur (2014 WashU) Galeopterus variegatus GCF_000696425.1_G_variegatus-3.0.2 SAMN01758971 PRJNA20511 2014-06-05
326 Sunda flying lemur (US047 2019 Broad) Galeopterus variegatus GCA_004027255.1_GalVar_v1_BIUU SAMN07678019 PRJNA399345 2019-01-16
327 tailed tailless bat Anoura caudifer GCA_004027475.1_AnoCau_v1_BIUU SAMN07678033 PRJNA399350 2019-01-16
328 Talazac's shrew tenrec Microgale talazaci GCA_004026705.1_MicTal_v1_BIUU SAMN07678058 PRJNA399450 2019-01-16
329 Tasmanian devil Sarcophilus harrisii GCF_902635505.1_mSarHar1.11 SAMEA6099886 PRJEB35073 2019-11-07
330 thirteen-lined ground squirrel (2021 HiC) Ictidomys tridecemlineatus GCF_016881025.1_HiC_Itri_2 SAMN08111062 PRJNA647389 2021-02-17
331 tiger Panthera tigris GCF_018350195.1_P.tigris_Pti1_mat1.1 SAMN17054330 PRJNA684344 2021-05-13
332 Transcaucasian mole vole Ellobius lutescens GCA_001685075.1_ASM168507v1 SAMN04317027 PRJNA305123 2016-07-14
333 Upper Galilee mountains blind mole rat (2095 2014 refseq) Nannospalax galili GCF_000622305.1_S.galili_v1.0 SAMN02299330 PRJNA213569 2014-06-05
334 vaquita (alt pseudohaplotype mPhoSin1 2019 VGP) Phocoena sinus GCA_008692045.1_mPhoSin1.alt SAMN12325353 PRJNA557832 2019-09-24
335 vaquita (mPhoSin1 2019 VGP) Phocoena sinus GCF_008692025.1_mPhoSin1.pri SAMN12325353 PRJNA557831 2019-09-26
336 water buffalo (Mediterranean 2018) Bubalus bubalis GCF_003121395.1_ASM312139v1 SAMN08640746 PRJNA437177 2018-05-14
337 water buffalo (Murrah 2021) Bubalus bubalis GCF_019923935.1_NDDB_SH_1 SAMN11104991 PRJNA525182 2021-09-10
338 Weddell seal (WS11-02 2013 refseq) Leptonychotes weddellii GCF_000349705.1_LepWed1.0 SAMN00672463 PRJNA68235 2013-03-29
339 western European hedgehog (2012 refseq) Erinaceus europaeus GCF_000296755.1_EriEur2.0 SAMN00760989 PRJNA74585 2012-09-19
340 western spotted skunk Spilogale gracilis GCA_004023965.1_SpiGra_v1_BIUU SAMN07678050 PRJNA399437 2019-01-15
341 white-footed mouse Peromyscus leucopus GCF_004664715.2_UCI_PerLeu_2.1 SAMN03488028 PRJNA281425 2020-10-02
342 white-tailed deer (Pink-7 2017 refseq) Odocoileus virginianus texanus GCF_002102435.1_Ovir.te_1.0 SAMN05363940 PRJNA317745 2017-04-20
343 white-toothed pygmy shrew (mSunEtr1 2022) Suncus etruscus GCF_024139225.1_mSunEtr1.pri.cur SAMN28420931 PRJNA838699 2022-07-06
344 wild Bactrian camel (BCGSAC Cfer 1.0 YT-003-E 2020) Camelus ferus GCF_009834535.1_BCGSAC_Cfer_1.0 SAMN12102236 PRJNA550024 2020-01-08
345 wild Bactrian camel (CB1 Naran 2013 refseq) Camelus ferus GCF_000311805.1_CB1 SAMN01910617 PRJNA76177 2013-07-30
346 wild goat Capra aegagrus GCA_000978405.1_CapAeg_1.0 SAMN03282421 PRJNA261263 2015-04-24
347 wild mouse SPRET_EiJ Mus spretus GCA_001624865.1_SPRET_EiJ_v1 SAMN04489830 PRJNA310854 2016-04-26
348 wild yak Bos mutus GCF_000298355.1_BosGru_v2.0 SAMN00744358 PRJNA74739 2013-01-09
349 woodchuck (LI92 2021) Marmota monax GCF_021218885.1_Marmota_monax_Labrador192_V1.0 SAMN21332666 PRJNA761405 2021-12-15
350 woodland dormouse Graphiurus murinus GCA_004027655.1_GraMur_v1_BIUU SAMN07678085 PRJNA399395 2019-01-16
351 woodland thicket rat Grammomys surdaster GCF_004785775.1_NIH_TR_1.0 SAMN11172698 PRJNA526040 2019-04-12
352 Yangtze finless porpoise (v2) Neophocaena asiaeorientalis asiaeorientalis GCF_003031525.2_Neophocaena_asiaeorientalis_V1 SAMN05831577 PRJNA343136 2018-04-03
353 Yangtze River dolphin (BGI 2013 refseq) Lipotes vexillifer GCF_000442215.1_Lipotes_vexillifer_v1 SAMN02953859 PRJNA174066 2013-07-31
354 yellow-bellied marmot (SJ_83 v2.1 2019) Marmota flaviventris GCF_003676075.3_GSC_YBM_2.1 SAMN10078668 PRJNA491472 2019-05-24
355 yellow-footed antechinus Antechinus flavipes GCA_016432865.1_AdamAnt SAMN16807749 PRJNA565840 2021-01-06
356 yellow-spotted hyrax Heterohyrax brucei GCA_004026845.1_HetBruBak_v1_BIUU SAMN07678088 PRJNA399398 2019-01-16
357 zebu cattle (Nelore 2014 refseq) Bos indicus GCF_000247795.1_Bos_indicus_1.0 SAMN02953802 PRJNA72827 2014-11-25

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 57 assemblies assembly stats track stats
Mammals 357 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 73 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats