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Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.
| count | common name link to genome browser |
ncbiRefSeq | xenoRefGene | augustus genes |
Ensembl genes |
gc5 base | gaps | assembly sequences |
Repeat Masker |
TRF simpleRepeat |
window Masker |
cpg islands |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Abingdon island giant tortoise GCF_003597395.1 |
50,402 (2.95 %) |
14,990 (1.01 %) |
19,565 (1.58 %) |
34,846 (1.54 %) |
43.71 (94.31 %) |
63,430 (5.70 %) |
10,618 (100.00 %) |
1,553,204 (12.95 %) |
274,155 (1.11 %) |
12,664,684 (27.42 %) |
62,829 (1.59 %) |
| 2 | Aeolian wall lizard (La Canna islet alternate hap 2022) GCA_027172095.1 |
n/a | 2,101 (1.18 %) |
5,350 (2.76 %) |
n/a | 43.70 (99.99 %) |
3 (0.00 %) |
4,811 (100.00 %) |
103,373 (4.27 %) |
58,480 (3.90 %) |
895,535 (27.44 %) |
10,399 (2.84 %) |
| 3 | Aeolian wall lizard (La Canna islet primary hap 2022 refseq) GCF_027172205.1 |
57,514 (4.49 %) |
14,340 (1.37 %) |
20,053 (2.31 %) |
n/a | 43.81 (100.00 %) |
30 (0.00 %) |
27 (100.00 %) |
832,937 (4.17 %) |
474,203 (4.04 %) |
7,020,288 (38.29 %) |
94,745 (2.70 %) |
| 4 | African bullfrog (1538 2019) GCA_004786255.1 |
n/a | 13,258 (1.31 %) |
15,309 (2.28 %) |
n/a | 38.30 (89.51 %) |
121,461 (10.52 %) |
5,411 (100.00 %) |
491,540 (1.54 %) |
401,074 (2.30 %) |
8,595,741 (27.94 %) |
14,854 (0.31 %) |
| 5 | African clawed frog (2021) GCF_017654675.1 |
80,912 (3.89 %) |
23,666 (1.59 %) |
32,527 (2.45 %) |
112,506 (5.21 %) |
39.34 (99.94 %) |
667 (0.06 %) |
55 (100.00 %) |
4,269,095 (35.49 %) |
1,028,861 (6.46 %) |
14,246,823 (43.67 %) |
108,774 (1.25 %) |
| 6 | American alligator (KSC_2009_1 2016) GCF_000281125.3 |
51,013 (3.53 %) |
14,424 (1.06 %) |
19,690 (1.51 %) |
n/a | 44.30 (97.86 %) |
236,641 (2.19 %) |
7,094 (100.00 %) |
2,842,761 (36.86 %) |
291,584 (0.69 %) |
12,464,318 (27.91 %) |
35,531 (1.28 %) |
| 7 | American alligator (2023 refseq) GCF_030867095.1 |
60,799 (4.33 %) |
14,383 (0.98 %) |
18,600 (1.45 %) |
n/a | 45.01 (99.30 %) |
161 (0.70 %) |
195 (100.00 %) |
3,322,624 (43.19 %) |
478,208 (1.77 %) |
12,316,424 (32.01 %) |
49,792 (2.45 %) |
| 8 | Asian vine snake (Xishuangbanna 2023) GCF_028640845.1 |
47,555 (4.15 %) |
13,005 (1.05 %) |
17,560 (1.65 %) |
n/a | 40.80 (100.00 %) |
331 (0.00 %) |
748 (100.00 %) |
1,484,082 (7.70 %) |
1,033,385 (5.12 %) |
8,266,544 (48.89 %) |
105,815 (4.08 %) |
| 9 | Asiatic toad (SCDJY-AF-19 2020) GCF_014858855.1 |
42,994 (1.39 %) |
14,061 (0.43 %) |
43,525 (1.76 %) |
36,577 (1.09 %) |
44.37 (98.21 %) |
3,874 (1.79 %) |
748 (100.00 %) |
1,577,809 (1.79 %) |
2,975,473 (12.67 %) |
18,834,930 (58.75 %) |
415,605 (4.12 %) |
| 10 | Atlantic stingray (hap1 2023 refseq) GCF_030144855.1 |
60,922 (2.51 %) |
12,544 (0.38 %) |
28,250 (1.22 %) |
n/a | 43.35 (99.99 %) |
1,648 (0.01 %) |
2,989 (100.00 %) |
8,579,099 (49.81 %) |
831,222 (15.75 %) |
21,718,178 (51.79 %) |
105,821 (2.42 %) |
| 11 | Atlantic stingray (hap2 2023) GCA_030144785.1 |
n/a | 11,960 (0.40 %) |
25,618 (1.25 %) |
n/a | 42.94 (99.99 %) |
1,633 (0.01 %) |
1,412 (100.00 %) |
7,453,535 (49.31 %) |
686,063 (13.00 %) |
19,985,605 (50.32 %) |
86,138 (2.16 %) |
| 12 | Australian saltwater crocodile GCF_001723895.1 |
34,090 (2.80 %) |
12,481 (1.05 %) |
13,920 (1.38 %) |
n/a | 43.90 (94.72 %) |
97,039 (5.30 %) |
70 (100.00 %) |
2,480,154 (36.88 %) |
215,190 (0.56 %) |
11,196,176 (26.22 %) |
26,647 (0.98 %) |
| 13 | axolotl (DD151 2021) GCA_002915635.3 |
n/a | 16,280 (0.07 %) |
186,628 (1.11 %) |
n/a | 46.01 (99.99 %) |
184,422 (0.01 %) |
27,157 (100.00 %) |
28,291,633 (68.19 %) |
7,299,053 (4.96 %) |
211,579 (99.99 %) |
2,388,998 (5.24 %) |
| 14 | Blainville's horned lizard (primary hap 2022) GCA_026167985.1 |
n/a | 13,944 (0.92 %) |
16,009 (1.45 %) |
n/a | 41.21 (100.00 %) |
73 (0.00 %) |
78 (100.00 %) |
1,636,825 (6.67 %) |
826,053 (3.24 %) |
12,398,166 (40.90 %) |
86,825 (1.61 %) |
| 15 | Blainville's horned lizard (alternate hap 2022) GCA_026167975.1 |
n/a | 12,696 (0.93 %) |
14,818 (1.50 %) |
n/a | 41.27 (100.00 %) |
64 (0.00 %) |
52 (100.00 %) |
1,468,805 (6.73 %) |
739,796 (3.28 %) |
10,900,584 (40.56 %) |
76,786 (1.60 %) |
| 16 | blonde ray (primary hap 2023) GCA_963514005.1 |
n/a | 11,900 (0.54 %) |
27,568 (1.55 %) |
n/a | 44.98 (99.98 %) |
2,269 (0.02 %) |
1,647 (100.00 %) |
8,972,805 (66.20 %) |
1,061,811 (8.11 %) |
11,599,498 (58.72 %) |
278,499 (6.42 %) |
| 17 | bowfin (hap2 2024) GCA_036365475.1 |
n/a | 13,813 (1.89 %) |
27,088 (4.55 %) |
n/a | 40.60 (100.00 %) |
80 (0.00 %) |
297 (100.00 %) |
886,999 (13.24 %) |
358,077 (7.37 %) |
4,625,277 (36.22 %) |
43,764 (2.79 %) |
| 18 | brown anole (Geneva1000 2022 refseq) GCF_025583915.1 |
38,099 (3.25 %) |
14,028 (1.05 %) |
19,932 (1.81 %) |
n/a | 41.14 (98.37 %) |
114,440 (1.64 %) |
118,178 (98.36 %) |
1,376,455 (6.78 %) |
1,094,843 (5.18 %) |
9,127,396 (44.98 %) |
46,291 (1.18 %) |
| 19 | brown house snake (FMNH 251328 2023) GCA_027560395.1 |
n/a | 11,753 (1.00 %) |
29,468 (1.83 %) |
n/a | 40.67 (98.13 %) |
169,987 (1.84 %) |
753,655 (98.16 %) |
1,167,225 (5.67 %) |
768,909 (2.88 %) |
8,825,109 (34.93 %) |
53,035 (1.80 %) |
| 20 | brown spotted pit viper GCF_001527695.2 |
24,323 (2.63 %) |
14,045 (1.20 %) |
27,133 (2.20 %) |
n/a | 39.97 (92.15 %) |
115,571 (7.86 %) |
167,851 (92.14 %) |
1,227,118 (8.97 %) |
819,247 (3.70 %) |
8,328,674 (35.16 %) |
68,858 (2.06 %) |
| 21 | Burmese python GCF_000186305.1 |
35,663 (4.16 %) |
13,718 (1.31 %) |
20,498 (2.06 %) |
n/a | 39.61 (96.54 %) |
235,132 (3.52 %) |
274,244 (96.48 %) |
727,874 (3.19 %) |
409,033 (2.06 %) |
8,318,382 (25.30 %) |
29,212 (1.10 %) |
| 22 | California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022) GCA_022578425.1 |
n/a | 13,973 (0.70 %) |
47,231 (2.71 %) |
n/a | 41.26 (99.97 %) |
5,955 (0.03 %) |
60,824 (99.97 %) |
1,793,416 (10.43 %) |
1,374,078 (8.30 %) |
10,043,407 (46.03 %) |
89,437 (4.63 %) |
| 23 | California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022) GCA_022577455.1 |
n/a | 13,386 (1.04 %) |
21,767 (2.35 %) |
n/a | 40.56 (100.00 %) |
256 (0.00 %) |
140 (100.00 %) |
1,354,500 (9.93 %) |
998,712 (8.21 %) |
8,504,468 (46.70 %) |
78,768 (3.37 %) |
| 24 | central bearded dragon GCF_900067755.1 |
42,304 (3.53 %) |
13,856 (1.19 %) |
17,956 (1.96 %) |
n/a | 41.81 (96.03 %) |
90,546 (3.99 %) |
13,749 (100.00 %) |
821,868 (3.44 %) |
570,849 (3.46 %) |
9,494,309 (29.78 %) |
48,137 (1.31 %) |
| 25 | Chinese alligator GCF_000455745.1 |
49,884 (3.04 %) |
14,431 (1.00 %) |
15,854 (1.43 %) |
n/a | 44.49 (96.86 %) |
167,965 (3.17 %) |
177,282 (96.83 %) |
2,919,372 (38.76 %) |
346,310 (1.06 %) |
12,332,417 (29.19 %) |
46,638 (1.19 %) |
| 26 | Chinese soft-shelled turtle GCF_000230535.1 |
45,441 (3.08 %) |
13,715 (0.96 %) |
16,798 (1.50 %) |
n/a | 44.42 (95.68 %) |
185,476 (4.35 %) |
205,380 (95.65 %) |
1,193,608 (10.92 %) |
455,163 (3.06 %) |
11,234,886 (32.34 %) |
95,997 (2.06 %) |
| 27 | coelacanth GCF_000225785.1 |
40,763 (2.63 %) |
13,493 (0.78 %) |
17,640 (1.50 %) |
n/a | 41.15 (76.37 %) |
269,010 (23.67 %) |
291,829 (76.33 %) |
2,026,776 (9.13 %) |
571,917 (1.19 %) |
14,630,157 (34.87 %) |
42,857 (0.54 %) |
| 28 | common blue-tongued skink (hap1 2024) GCA_035046495.1 |
n/a | 13,999 (1.21 %) |
18,145 (2.02 %) |
n/a | 44.85 (100.00 %) |
286 (0.00 %) |
827 (100.00 %) |
844,126 (6.57 %) |
462,086 (2.56 %) |
8,237,807 (37.72 %) |
30,098 (0.96 %) |
| 29 | common blue-tongued skink (hap2 2024) GCA_035046505.1 |
n/a | 13,266 (1.21 %) |
16,750 (1.98 %) |
n/a | 44.73 (100.00 %) |
372 (0.00 %) |
350 (100.00 %) |
782,672 (6.46 %) |
434,795 (2.20 %) |
7,788,697 (37.04 %) |
28,089 (0.98 %) |
| 30 | common frog (alternate hap 2021) GCA_905171725.1 |
n/a | 13,073 (0.44 %) |
43,036 (1.95 %) |
n/a | 44.07 (100.00 %) |
14 (0.00 %) |
12,033 (100.00 %) |
1,489,788 (2.18 %) |
2,621,157 (9.04 %) |
17,154,926 (55.44 %) |
581,115 (7.68 %) |
| 31 | common garter snake GCF_001077635.1 |
26,656 (3.83 %) |
11,623 (1.25 %) |
17,501 (2.23 %) |
n/a | 39.92 (78.84 %) |
246,220 (21.21 %) |
175,977 (78.79 %) |
606,040 (3.22 %) |
543,646 (2.36 %) |
6,946,141 (27.08 %) |
36,264 (1.27 %) |
| 32 | common lizard Z.vivipara (primary hap 2023) GCF_963506605.1 |
45,869 (6.34 %) |
14,279 (1.46 %) |
19,710 (2.38 %) |
n/a | 44.05 (99.99 %) |
683 (0.01 %) |
48 (100.00 %) |
4,128,183 (45.62 %) |
513,318 (3.73 %) |
7,172,928 (37.61 %) |
92,858 (2.90 %) |
| 33 | common spadefoot toad (aPelFus1 2024) GCA_036172605.1 |
n/a | 14,564 (0.56 %) |
46,435 (2.21 %) |
n/a | 42.04 (100.00 %) |
349 (0.00 %) |
161 (100.00 %) |
1,677,382 (3.51 %) |
3,229,435 (13.31 %) |
15,027,089 (51.43 %) |
282,389 (3.86 %) |
| 34 | common wall lizard GCF_004329235.1 |
56,506 (4.85 %) |
14,453 (1.36 %) |
20,529 (2.31 %) |
n/a | 44.18 (99.81 %) |
4,085 (0.19 %) |
2,161 (100.00 %) |
1,089,164 (8.31 %) |
506,669 (2.12 %) |
7,474,116 (36.15 %) |
122,507 (3.69 %) |
| 35 | common toad (alternate hap 2021) GCA_905171715.1 |
n/a | 12,074 (0.39 %) |
46,329 (1.82 %) |
n/a | 44.48 (99.99 %) |
156 (0.01 %) |
24,351 (99.99 %) |
1,186,360 (1.65 %) |
2,279,941 (13.33 %) |
14,665,548 (61.48 %) |
405,097 (4.49 %) |
| 36 | common toad (primary hap 2021) GCF_905171765.1 |
45,085 (1.10 %) |
14,240 (0.38 %) |
46,470 (1.68 %) |
37,594 (0.91 %) |
44.49 (99.80 %) |
4,199 (0.20 %) |
1,306 (100.00 %) |
1,658,204 (1.79 %) |
3,099,513 (13.49 %) |
19,236,510 (62.70 %) |
539,919 (4.45 %) |
| 37 | corn snake (Columbia U 2023) GCF_029531705.1 |
53,076 (4.72 %) |
13,697 (1.21 %) |
20,819 (2.22 %) |
n/a | 40.33 (96.60 %) |
3,553 (3.40 %) |
4,019 (96.60 %) |
4,116,616 (49.72 %) |
917,455 (3.96 %) |
8,460,248 (40.76 %) |
64,946 (2.08 %) |
| 38 | corn snake (EG266 2020) GCF_001185365.1 |
48,995 (3.92 %) |
13,316 (1.14 %) |
23,595 (2.17 %) |
29,466 (2.61 %) |
40.35 (95.32 %) |
84,947 (4.70 %) |
34,268 (100.00 %) |
1,243,828 (6.50 %) |
884,533 (3.25 %) |
8,373,398 (40.31 %) |
66,926 (2.14 %) |
| 39 | corroboree frog (hap1 2023) GCA_028390055.1 |
n/a | 14,955 (0.23 %) |
n/a | n/a | 45.61 (99.80 %) |
2,431 (0.20 %) |
5,958 (99.80 %) |
20,007,151 (76.28 %) |
5,951,819 (19.40 %) |
5,958 (99.80 %) |
991,009 (4.86 %) |
| 40 | corroboree frog (hap2 2023) GCA_028390025.1 |
n/a | n/a | 54,346 (1.07 %) |
n/a | 45.66 (99.76 %) |
2,699 (0.24 %) |
3,127 (100.00 %) |
18,782,633 (75.22 %) |
5,902,115 (18.63 %) |
5,826 (99.76 %) |
990,274 (4.84 %) |
| 41 | Cretan wall lizard (alternate hap 2023) GCA_951804955.1 |
n/a | 13,192 (1.36 %) |
19,293 (2.32 %) |
n/a | 43.88 (100.00 %) |
n/a | 1,936 (100.00 %) |
808,341 (4.31 %) |
467,532 (2.91 %) |
6,418,809 (38.02 %) |
107,080 (3.15 %) |
| 42 | Cretan wall lizard (primary hap 2023) GCA_951804945.1 |
n/a | 14,249 (1.37 %) |
19,304 (2.27 %) |
n/a | 43.87 (100.00 %) |
47 (0.00 %) |
55 (100.00 %) |
882,564 (4.30 %) |
511,174 (3.24 %) |
7,094,363 (38.65 %) |
117,222 (3.18 %) |
| 43 | diamondback terrapin (hap1 2023 refseq) GCF_027887155.1 |
50,318 (3.53 %) |
15,109 (1.08 %) |
19,280 (1.62 %) |
n/a | 44.46 (99.92 %) |
141 (0.08 %) |
76 (100.00 %) |
4,088,064 (46.33 %) |
403,943 (1.72 %) |
11,014,504 (33.74 %) |
110,838 (2.71 %) |
| 44 | diamondback terrapin (hap2 rMalTer1 2023) GCA_027887205.1 |
n/a | 15,081 (1.08 %) |
19,115 (1.62 %) |
n/a | 44.46 (99.98 %) |
127 (0.02 %) |
59 (100.00 %) |
4,093,707 (46.36 %) |
404,046 (1.70 %) |
11,113,266 (33.78 %) |
111,129 (2.68 %) |
| 45 | eastern brown snake GCF_900518735.1 |
34,614 (3.30 %) |
13,625 (1.22 %) |
21,795 (2.00 %) |
n/a | 39.84 (97.54 %) |
59,472 (2.47 %) |
28,550 (100.00 %) |
1,020,240 (5.86 %) |
663,810 (2.41 %) |
8,140,554 (39.61 %) |
52,895 (2.12 %) |
| 46 | eastern musk turtle (primary hap 2023) GCA_032164245.1 |
n/a | 13,413 (1.19 %) |
18,038 (1.85 %) |
n/a | 44.58 (99.99 %) |
553 (0.01 %) |
771 (99.99 %) |
1,003,504 (9.02 %) |
621,617 (3.54 %) |
8,327,948 (30.44 %) |
117,734 (4.05 %) |
| 47 | eastern narrow-mouthed toad (primary haplotype 2023) GCA_027917425.1 |
n/a | 13,882 (0.43 %) |
35,323 (1.46 %) |
n/a | 46.78 (99.99 %) |
1,745 (0.01 %) |
1,002 (100.00 %) |
1,769,293 (1.99 %) |
2,023,109 (16.33 %) |
16,148,710 (60.55 %) |
618,204 (5.89 %) |
| 48 | eastern narrow-mouthed toad (hap2 2023) GCA_027917415.1 |
n/a | 13,632 (0.43 %) |
35,630 (1.52 %) |
n/a | 46.77 (99.99 %) |
1,773 (0.01 %) |
590 (100.00 %) |
1,759,193 (1.98 %) |
2,013,186 (16.21 %) |
16,138,898 (60.55 %) |
614,432 (5.85 %) |
| 49 | elephant shark (2021) GCF_018977255.1 |
32,553 (4.75 %) |
11,542 (1.51 %) |
18,900 (3.25 %) |
n/a | 42.85 (99.99 %) |
14,404 (0.01 %) |
3,822 (99.99 %) |
1,971,730 (36.60 %) |
433,955 (3.92 %) |
5,654,656 (37.91 %) |
41,081 (3.43 %) |
| 50 | epaulette shark (primary hap 2021 refseq) GCF_020745735.1 |
43,156 (1.65 %) |
12,749 (0.40 %) |
19,519 (1.06 %) |
n/a | 42.76 (98.05 %) |
3,716 (1.95 %) |
1,962 (100.00 %) |
9,420,365 (63.82 %) |
935,037 (6.51 %) |
20,660,566 (43.88 %) |
41,682 (1.08 %) |
| 51 | epaulette shark (alternate hap sHemOce1 2021) GCA_020745765.1 |
n/a | 12,650 (0.38 %) |
20,614 (1.06 %) |
n/a | 42.75 (97.99 %) |
3,552 (2.01 %) |
4,000 (100.00 %) |
9,489,793 (70.34 %) |
976,827 (6.97 %) |
21,183,330 (44.32 %) |
42,917 (1.08 %) |
| 52 | European common frog (2021) GCF_905171775.1 |
51,633 (1.57 %) |
13,864 (0.46 %) |
39,978 (1.88 %) |
57,578 (1.85 %) |
44.15 (99.36 %) |
1,860 (0.64 %) |
554 (100.00 %) |
1,804,642 (3.42 %) |
2,925,830 (9.39 %) |
18,921,726 (55.43 %) |
641,799 (7.66 %) |
| 53 | European conger (primary hap 2023 refseq) GCF_963514075.1 |
54,631 (7.46 %) |
17,072 (1.89 %) |
34,801 (5.07 %) |
n/a | 43.89 (99.98 %) |
1,009 (0.02 %) |
380 (100.00 %) |
761,522 (5.99 %) |
913,306 (13.25 %) |
5,767,879 (35.48 %) |
120,990 (6.12 %) |
| 54 | European eel (alternate hap 2020) GCA_013347865.1 |
n/a | 17,177 (2.21 %) |
36,037 (5.58 %) |
n/a | 43.55 (100.00 %) |
n/a | 2,338 (100.00 %) |
811,567 (5.37 %) |
759,871 (7.97 %) |
5,672,321 (27.30 %) |
127,837 (8.05 %) |
| 55 | European eel (primary hap 2020) GCF_013347855.1 |
64,143 (9.57 %) |
17,054 (2.22 %) |
34,278 (5.56 %) |
79,684 (7.37 %) |
43.64 (99.61 %) |
640 (0.40 %) |
54 (100.00 %) |
831,037 (5.48 %) |
786,521 (8.15 %) |
5,700,890 (27.40 %) |
130,346 (8.19 %) |
| 56 | European leaf-toed gecko (hap1 2023) GCF_029931775.1 |
24,643 (2.02 %) |
14,238 (1.16 %) |
21,782 (2.17 %) |
n/a | 44.68 (99.77 %) |
153 (0.23 %) |
591 (100.00 %) |
1,174,615 (6.99 %) |
436,937 (2.95 %) |
8,308,817 (39.80 %) |
83,089 (2.82 %) |
| 57 | European leaf-toed gecko (hap2 2023) GCA_029931755.1 |
n/a | 14,220 (1.16 %) |
21,979 (2.19 %) |
n/a | 44.64 (99.68 %) |
177 (0.32 %) |
381 (100.00 %) |
1,169,660 (6.57 %) |
432,998 (2.45 %) |
8,403,791 (39.55 %) |
82,695 (2.80 %) |
| 58 | European pond turtle (hap1 rEmyOrb1 2023) GCA_028017835.1 |
n/a | 14,802 (0.99 %) |
19,772 (1.60 %) |
n/a | 44.74 (99.86 %) |
148 (0.14 %) |
106 (100.00 %) |
1,526,737 (12.44 %) |
460,562 (2.12 %) |
11,130,580 (35.42 %) |
136,002 (2.92 %) |
| 59 | European pond turtle (hap2 rEmyOrb1 2023) GCA_028017845.1 |
n/a | 14,971 (1.00 %) |
20,099 (1.61 %) |
n/a | 44.79 (99.77 %) |
130 (0.23 %) |
156 (100.00 %) |
1,536,611 (12.44 %) |
471,903 (2.16 %) |
11,129,943 (35.50 %) |
138,047 (2.94 %) |
| 60 | fence lizard GCF_019175285.1 |
48,391 (3.65 %) |
14,000 (1.07 %) |
17,384 (1.71 %) |
n/a | 41.25 (97.53 %) |
48,138 (2.47 %) |
45,012 (100.00 %) |
1,357,856 (6.95 %) |
596,824 (1.92 %) |
11,090,372 (34.38 %) |
67,007 (1.51 %) |
| 61 | fire-bellied toad (alternate hap 2023) GCA_027579415.1 |
n/a | 2,936 (0.15 %) |
17,722 (1.38 %) |
n/a | 38.51 (100.00 %) |
n/a | 13,751 (100.00 %) |
919,882 (3.50 %) |
1,443,294 (10.50 %) |
7,705,012 (57.28 %) |
74,669 (1.25 %) |
| 62 | fire-bellied toad (primary hap 2023 refseq) GCF_027579735.1 |
38,238 (0.68 %) |
15,452 (0.21 %) |
47,500 (0.88 %) |
n/a | 38.98 (98.02 %) |
7,009 (1.99 %) |
2,467 (100.00 %) |
4,258,941 (3.44 %) |
7,150,261 (12.27 %) |
9,476 (98.01 %) |
n/a |
| 63 | Florida worm lizard (hap1 rRhiFlo1 2023) GCA_030035715.1 |
n/a | 14,392 (0.90 %) |
17,909 (1.50 %) |
n/a | 42.86 (99.84 %) |
213 (0.16 %) |
836 (99.84 %) |
1,440,070 (7.19 %) |
620,131 (2.54 %) |
10,919,950 (45.21 %) |
47,933 (1.03 %) |
| 64 | Florida worm lizard (hap2 rRhiFlo1 2023) GCA_030035675.1 |
n/a | 14,331 (0.90 %) |
17,854 (1.51 %) |
n/a | 42.86 (99.72 %) |
242 (0.28 %) |
78 (100.00 %) |
1,426,833 (7.17 %) |
616,690 (2.63 %) |
10,819,054 (45.31 %) |
47,454 (1.03 %) |
| 65 | Gaboon caecilian (alternate hap 2019) GCA_902459495.1 |
n/a | 12,821 (0.47 %) |
30,612 (1.44 %) |
n/a | 43.23 (100.00 %) |
1 (0.00 %) |
9,651 (100.00 %) |
1,139,595 (1.64 %) |
1,170,215 (3.77 %) |
17,091,511 (52.44 %) |
235,170 (4.50 %) |
| 66 | Gaboon caecilian (v1.2 2021 genbank) GCA_902459505.2 |
n/a | 14,269 (0.51 %) |
29,026 (1.40 %) |
n/a | 43.24 (99.85 %) |
433 (0.15 %) |
164 (100.00 %) |
1,331,879 (1.68 %) |
1,364,597 (3.83 %) |
19,589,806 (52.85 %) |
270,923 (4.52 %) |
| 67 | gharial (Ggan-Ray 2016) GCF_001723915.1 |
32,284 (2.61 %) |
12,194 (1.03 %) |
12,758 (1.30 %) |
n/a | 43.95 (73.60 %) |
248,526 (26.44 %) |
81 (100.00 %) |
2,589,103 (36.89 %) |
243,334 (0.51 %) |
11,279,606 (20.80 %) |
26,651 (0.60 %) |
| 68 | gharial (hap1 2023) GCA_030020385.1 |
n/a | 14,254 (0.94 %) |
23,016 (2.00 %) |
n/a | 45.13 (99.95 %) |
61 (0.05 %) |
298 (100.00 %) |
1,230,357 (13.08 %) |
350,230 (2.85 %) |
11,854,314 (33.03 %) |
39,919 (1.95 %) |
| 69 | gharial (hap2 2023) GCA_030020295.1 |
n/a | 14,151 (0.94 %) |
23,338 (1.95 %) |
n/a | 45.15 (99.95 %) |
118 (0.05 %) |
160 (100.00 %) |
1,232,693 (12.81 %) |
332,737 (2.19 %) |
11,907,298 (32.91 %) |
40,660 (1.87 %) |
| 70 | giant manta (hap1 2023) GCA_030028105.1 |
n/a | 12,432 (0.38 %) |
24,821 (1.16 %) |
n/a | 43.26 (99.23 %) |
1,810 (0.77 %) |
4,715 (100.00 %) |
7,913,208 (49.68 %) |
969,352 (14.22 %) |
20,235,210 (54.42 %) |
110,678 (1.74 %) |
| 71 | giant manta (hap2 2023) GCA_030035685.1 |
n/a | 12,198 (0.42 %) |
23,127 (1.17 %) |
n/a | 42.85 (98.49 %) |
1,742 (1.51 %) |
1,558 (100.00 %) |
7,431,472 (52.41 %) |
716,951 (7.28 %) |
19,456,793 (50.99 %) |
91,414 (1.45 %) |
| 72 | Goodes thornscrub tortoise (Sinaloan 2019) GCF_007399415.2 |
57,442 (3.17 %) |
14,852 (1.00 %) |
18,125 (1.49 %) |
31,841 (1.80 %) |
44.14 (98.71 %) |
562 (1.29 %) |
383 (100.00 %) |
1,630,271 (13.86 %) |
387,796 (2.00 %) |
11,572,827 (33.36 %) |
71,687 (2.29 %) |
| 73 | Goodes thornscrub tortoise (Sinaloan alternate hap 2019) GCA_007399395.1 |
n/a | 13,359 (0.95 %) |
19,347 (1.51 %) |
n/a | 44.27 (100.00 %) |
n/a | 8,736 (100.00 %) |
1,404,513 (13.79 %) |
334,726 (2.35 %) |
9,735,007 (33.33 %) |
61,680 (2.32 %) |
| 74 | gopher snake (HBS135680 alternate hap 2023) GCA_029215685.1 |
n/a | 12,291 (1.06 %) |
19,125 (2.02 %) |
n/a | 40.55 (100.00 %) |
584 (0.00 %) |
1,233 (100.00 %) |
1,259,781 (7.92 %) |
925,571 (7.56 %) |
7,739,320 (45.92 %) |
73,681 (2.81 %) |
| 75 | gopher snake (HBS135680 primary hap 2023) GCA_029215655.1 |
n/a | 13,289 (1.09 %) |
20,513 (2.09 %) |
n/a | 40.35 (100.00 %) |
603 (0.00 %) |
1,029 (100.00 %) |
1,325,747 (8.26 %) |
973,338 (7.56 %) |
8,352,703 (45.38 %) |
72,941 (2.59 %) |
| 76 | graceful crag lizard (Gifberg primary hap 2022) GCF_027244095.1 |
86,666 (4.30 %) |
14,269 (0.91 %) |
18,195 (1.57 %) |
n/a | 44.82 (100.00 %) |
42 (0.00 %) |
44 (100.00 %) |
1,644,976 (6.04 %) |
823,058 (3.00 %) |
11,991,046 (41.43 %) |
80,718 (1.90 %) |
| 77 | Grand Cayman blue iguana (hap1 2023) GCA_030412105.1 |
n/a | 14,094 (1.03 %) |
17,875 (1.65 %) |
n/a | 41.62 (99.95 %) |
28 (0.05 %) |
30 (100.00 %) |
1,100,228 (6.21 %) |
423,695 (1.33 %) |
11,521,828 (32.55 %) |
62,978 (2.00 %) |
| 78 | Grand Cayman blue iguana (hap2 2023) GCA_030412085.1 |
n/a | 13,758 (1.02 %) |
16,909 (1.62 %) |
n/a | 41.53 (99.01 %) |
19 (0.99 %) |
52 (99.01 %) |
1,069,189 (6.12 %) |
410,262 (1.25 %) |
11,390,195 (32.28 %) |
60,835 (1.92 %) |
| 79 | gray bichir GCF_016835505.1 |
48,178 (1.88 %) |
12,963 (0.44 %) |
24,479 (1.21 %) |
n/a | 39.32 (99.96 %) |
3,166 (0.04 %) |
9,856 (100.00 %) |
1,765,862 (2.54 %) |
1,017,723 (2.38 %) |
20,924,763 (47.66 %) |
98,862 (1.64 %) |
| 80 | great white shark (alternate hap 2021) GCA_017639455.1 |
n/a | 20 (0.30 %) |
63 (2.06 %) |
n/a | 45.02 (99.98 %) |
28 (0.02 %) |
39 (100.00 %) |
8,165 (60.43 %) |
2,740 (27.09 %) |
15,863 (31.63 %) |
167 (5.51 %) |
| 81 | great white shark (primary hap 2021) GCF_017639515.1 |
49,865 (1.46 %) |
13,010 (0.37 %) |
19,263 (0.92 %) |
46,152 (1.30 %) |
45.21 (99.55 %) |
2,645 (0.45 %) |
719 (100.00 %) |
1,046,023 (4.00 %) |
1,584,100 (21.25 %) |
23,278,563 (52.42 %) |
77,021 (1.94 %) |
| 82 | green anole (JA03-04 2024) GCF_035594765.1 |
56,324 (5.85 %) |
14,020 (1.12 %) |
20,096 (1.86 %) |
n/a | 40.60 (98.38 %) |
841 (1.62 %) |
211 (100.00 %) |
4,859,635 (53.14 %) |
909,429 (5.19 %) |
8,304,332 (44.07 %) |
56,404 (1.78 %) |
| 83 | green anole (v1 2011) GCF_000090745.1 |
38,096 (3.63 %) |
13,021 (1.08 %) |
20,780 (1.86 %) |
38,266 (3.08 %) |
40.32 (94.57 %) |
35,533 (5.44 %) |
41,987 (94.56 %) |
2,415,433 (28.92 %) |
702,538 (2.99 %) |
8,199,653 (39.69 %) |
42,151 (1.18 %) |
| 84 | green anole (v2 2010) GCF_000090745.2 |
38,096 (3.63 %) |
13,140 (1.11 %) |
20,772 (1.86 %) |
38,229 (3.08 %) |
40.32 (94.57 %) |
35,530 (5.44 %) |
41,986 (94.56 %) |
4,455,733 (51.37 %) |
702,537 (2.99 %) |
8,199,580 (39.69 %) |
42,151 (1.18 %) |
| 85 | green sea turtle (v2 alternate hap 2021) GCA_015220195.2 |
n/a | 13,635 (1.05 %) |
19,414 (1.61 %) |
n/a | 44.16 (99.95 %) |
60 (0.05 %) |
6,797 (99.95 %) |
3,221,668 (44.97 %) |
275,275 (1.28 %) |
9,802,895 (32.14 %) |
45,469 (1.48 %) |
| 86 | green sea turtle (v2 primary hap 2021) GCF_015237465.2 |
84,366 (4.63 %) |
14,725 (1.06 %) |
17,444 (1.56 %) |
n/a | 44.01 (99.44 %) |
298 (0.56 %) |
93 (100.00 %) |
1,701,640 (14.83 %) |
304,306 (1.25 %) |
11,135,147 (31.96 %) |
49,025 (1.44 %) |
| 87 | High Himalaya frog GCF_000935625.1 |
26,109 (1.87 %) |
13,695 (0.94 %) |
28,085 (2.39 %) |
n/a | 42.55 (96.32 %) |
122,325 (3.70 %) |
147,513 (96.30 %) |
536,058 (1.39 %) |
794,563 (5.48 %) |
11,465,450 (37.44 %) |
219,772 (3.92 %) |
| 88 | horn shark (hap1 2024) GCA_036365525.1 |
n/a | 15,006 (0.28 %) |
22,481 (0.80 %) |
n/a | 45.05 (99.53 %) |
2,781 (0.47 %) |
2,532 (99.97 %) |
1,344,546 (5.76 %) |
2,364,825 (28.34 %) |
5,088 (99.53 %) |
89,340 (2.10 %) |
| 89 | horn shark (hap2 2024) GCA_036365495.1 |
n/a | 12,766 (0.30 %) |
21,591 (0.87 %) |
n/a | 44.88 (99.43 %) |
2,790 (0.57 %) |
1,496 (100.00 %) |
1,008,880 (5.19 %) |
1,596,129 (22.32 %) |
22,180,341 (62.98 %) |
82,276 (1.85 %) |
| 90 | hourglass treefrog (maternal 2023) GCA_027789725.1 |
n/a | 14,359 (0.89 %) |
32,575 (2.67 %) |
n/a | 43.88 (95.18 %) |
788 (4.82 %) |
3,358 (95.18 %) |
922,807 (2.38 %) |
1,744,603 (15.45 %) |
10,318,168 (48.47 %) |
244,270 (5.02 %) |
| 91 | hourglass treefrog (paternal 2023) GCA_027789765.1 |
n/a | 14,058 (0.89 %) |
31,050 (2.69 %) |
n/a | 43.97 (99.70 %) |
804 (0.30 %) |
2,200 (100.00 %) |
906,816 (2.43 %) |
1,710,859 (17.48 %) |
10,069,798 (51.41 %) |
235,277 (5.56 %) |
| 92 | Iberian parsley frog (aPelIbe1 2024) GCA_036172795.1 |
n/a | 14,141 (0.97 %) |
22,232 (2.16 %) |
n/a | 39.73 (100.00 %) |
262 (0.00 %) |
99 (100.00 %) |
944,742 (4.86 %) |
1,927,659 (22.26 %) |
8,988,510 (49.29 %) |
77,721 (1.73 %) |
| 93 | Iberian ribbed newt (20211129_DDA 2022) GCA_026652325.1 |
n/a | 15,136 (0.10 %) |
n/a | n/a | 45.95 (100.00 %) |
922 (0.00 %) |
296 (100.00 %) |
4,478,794 (1.33 %) |
6,452,537 (8.86 %) |
1,189 (100.00 %) |
1,581,360 (4.00 %) |
| 94 | Indo-Pacific tarpon (alternate hap 2020) GCA_013368575.1 |
n/a | 17,858 (2.43 %) |
32,738 (5.46 %) |
n/a | 43.05 (100.00 %) |
3 (0.00 %) |
4,333 (100.00 %) |
583,632 (3.71 %) |
418,411 (3.74 %) |
5,198,155 (21.50 %) |
76,879 (3.71 %) |
| 95 | Komodo dragon (SLA01 2019) GCF_004798865.1 |
43,331 (4.33 %) |
13,543 (1.31 %) |
18,081 (2.11 %) |
n/a | 44.04 (99.03 %) |
19,737 (0.97 %) |
1,411 (100.00 %) |
753,603 (4.91 %) |
263,965 (1.41 %) |
8,061,012 (24.65 %) |
49,808 (4.28 %) |
| 96 | Lataste's viper (alternate hap 2022) GCA_024294605.1 |
n/a | 13,155 (1.15 %) |
22,239 (2.06 %) |
n/a | 41.01 (100.00 %) |
1 (0.00 %) |
6,800 (100.00 %) |
1,155,093 (7.75 %) |
707,777 (4.25 %) |
7,071,611 (44.00 %) |
104,556 (4.39 %) |
| 97 | Lataste's viper (primary hap 2022) GCA_024294585.1 |
n/a | 13,350 (1.17 %) |
18,904 (1.93 %) |
n/a | 40.96 (99.78 %) |
769 (0.22 %) |
56 (100.00 %) |
1,209,793 (7.69 %) |
762,735 (5.06 %) |
7,424,674 (44.80 %) |
110,631 (4.07 %) |
| 98 | leatherback sea turtle (v4 primary hap 2021 refseq G10K) GCF_009764565.3 |
73,318 (3.97 %) |
14,610 (1.03 %) |
16,358 (1.45 %) |
n/a | 43.35 (99.74 %) |
668 (0.26 %) |
40 (100.00 %) |
1,694,449 (14.90 %) |
304,773 (1.14 %) |
11,121,962 (34.21 %) |
35,485 (1.36 %) |
| 99 | leatherback sea turtle (v2 alternate hap 2020) GCA_009762595.2 |
n/a | 11,035 (1.05 %) |
16,064 (1.50 %) |
n/a | 43.52 (100.00 %) |
7 (0.00 %) |
9,006 (100.00 %) |
2,685,200 (47.08 %) |
208,060 (1.19 %) |
7,184,246 (33.31 %) |
25,133 (1.42 %) |
| 100 | leopard gecko (TG4126 2023) GCF_028583425.1 |
37,120 (2.89 %) |
14,358 (0.93 %) |
23,080 (1.92 %) |
n/a | 44.06 (100.00 %) |
62 (0.00 %) |
76 (100.00 %) |
969,188 (4.21 %) |
557,245 (2.88 %) |
11,096,222 (37.91 %) |
82,956 (2.56 %) |
| 101 | little skate (New England 2023) GCF_028641065.1 |
40,008 (3.35 %) |
11,836 (0.67 %) |
25,770 (1.80 %) |
n/a | 44.13 (100.00 %) |
862 (0.00 %) |
1,769 (100.00 %) |
8,221,960 (66.45 %) |
1,044,111 (3.71 %) |
10,050,264 (53.79 %) |
205,567 (4.36 %) |
| 102 | loggerhead turtle (SJ_126:Eziel1 2022) GCF_023653815.1 |
61,631 (3.99 %) |
14,678 (1.05 %) |
17,405 (1.52 %) |
42,180 (2.89 %) |
44.04 (99.90 %) |
745 (0.10 %) |
2,008 (100.00 %) |
1,279,721 (12.58 %) |
319,729 (1.29 %) |
10,705,612 (33.91 %) |
49,015 (1.39 %) |
| 103 | mainland tiger snake GCF_900518725.1 |
34,251 (3.18 %) |
13,445 (1.15 %) |
23,410 (1.90 %) |
n/a | 39.72 (95.17 %) |
79,478 (4.84 %) |
52,414 (100.00 %) |
1,081,503 (6.00 %) |
711,408 (2.47 %) |
8,047,065 (40.24 %) |
61,669 (2.47 %) |
| 104 | many-banded krait (BM01 2022) GCA_023653725.1 |
n/a | 13,269 (1.19 %) |
18,533 (1.94 %) |
n/a | 39.87 (99.25 %) |
1,631 (0.75 %) |
448 (100.00 %) |
1,104,569 (6.42 %) |
703,174 (3.07 %) |
8,451,422 (40.97 %) |
65,260 (2.74 %) |
| 105 | marbled whiptail (SIMRID8450 2020) GCA_014337955.1 |
n/a | 13,646 (1.27 %) |
18,378 (2.09 %) |
n/a | 42.67 (94.37 %) |
166,840 (5.67 %) |
3,826 (100.00 %) |
809,278 (4.31 %) |
439,020 (1.66 %) |
8,665,254 (33.02 %) |
41,638 (1.70 %) |
| 106 | meadow viper (primary hap 2022) GCA_947247035.1 |
n/a | 13,282 (1.16 %) |
18,653 (1.90 %) |
n/a | 40.93 (99.98 %) |
1,819 (0.02 %) |
384 (100.00 %) |
1,187,501 (7.72 %) |
762,639 (6.28 %) |
7,428,147 (45.35 %) |
101,007 (3.95 %) |
| 107 | meadow viper (alternate hap 2022) GCA_947247025.1 |
n/a | 10,549 (1.13 %) |
20,171 (2.08 %) |
n/a | 41.02 (100.00 %) |
12 (0.00 %) |
9,587 (100.00 %) |
889,533 (7.84 %) |
565,831 (6.37 %) |
5,968,624 (41.74 %) |
73,632 (3.80 %) |
| 108 | Mexican gopher tortoise (WGS:JAMKFC01 2022) GCF_025201925.1 |
62,007 (3.15 %) |
14,883 (0.96 %) |
18,524 (1.48 %) |
n/a | 44.69 (96.36 %) |
1,866 (3.64 %) |
621 (100.00 %) |
1,372,189 (11.32 %) |
472,501 (3.42 %) |
11,362,604 (34.69 %) |
73,700 (2.04 %) |
| 109 | Mexican gopher tortoise (WGS:JAMKFD01 2022) GCA_025201965.1 |
n/a | 15,425 (0.94 %) |
20,005 (1.48 %) |
n/a | 44.46 (95.51 %) |
1,790 (4.49 %) |
4,782 (95.51 %) |
1,404,726 (11.28 %) |
453,302 (2.47 %) |
11,996,092 (34.08 %) |
77,167 (2.14 %) |
| 110 | mimic poison frog (primary hap 2023) GCA_032444005.1 |
n/a | 14,957 (0.34 %) |
n/a | n/a | 44.95 (100.00 %) |
765 (0.00 %) |
1,686 (100.00 %) |
1,716,760 (1.89 %) |
4,088,695 (23.45 %) |
2,437 (100.00 %) |
n/a |
| 111 | Mississippi paddlefish GCF_017654505.1 |
66,226 (6.17 %) |
21,806 (1.85 %) |
31,525 (3.80 %) |
n/a | 39.02 (99.89 %) |
2,963 (0.11 %) |
7,192 (99.89 %) |
1,126,936 (3.66 %) |
877,525 (6.33 %) |
9,039,918 (36.85 %) |
29,954 (1.06 %) |
| 112 | Northern rubber boa (HBS 135849 alternate hap 2022) GCA_023362785.1 |
n/a | 12,816 (1.09 %) |
18,099 (1.83 %) |
n/a | 41.86 (100.00 %) |
84 (0.00 %) |
224 (100.00 %) |
1,081,107 (4.01 %) |
728,703 (4.64 %) |
6,961,724 (42.46 %) |
128,617 (3.90 %) |
| 113 | Northern rubber boa (HBS 135849 primary hap 2022) GCA_023362775.1 |
n/a | 13,531 (1.08 %) |
18,971 (1.81 %) |
n/a | 41.83 (100.00 %) |
85 (0.00 %) |
289 (100.00 %) |
1,138,891 (3.99 %) |
798,941 (5.00 %) |
7,476,142 (42.85 %) |
135,874 (3.88 %) |
| 114 | Northwestern pond turtle (WTP2003 alternate hap 2022) GCA_022086895.1 |
n/a | 14,212 (1.00 %) |
20,203 (1.65 %) |
n/a | 44.72 (99.99 %) |
1,800 (0.01 %) |
2,508 (100.00 %) |
4,246,095 (48.91 %) |
442,393 (1.88 %) |
10,453,096 (35.71 %) |
134,572 (3.12 %) |
| 115 | Northwestern pond turtle (WTP2003 primary hap 2022) GCA_022086475.1 |
n/a | 14,862 (1.02 %) |
19,830 (1.62 %) |
n/a | 44.76 (100.00 %) |
148 (0.00 %) |
48 (100.00 %) |
4,413,681 (48.88 %) |
459,701 (1.92 %) |
11,014,102 (35.89 %) |
141,800 (3.08 %) |
| 116 | olive python (hap1 2023) GCA_030867105.1 |
n/a | 13,448 (1.31 %) |
17,745 (2.07 %) |
n/a | 40.20 (99.98 %) |
73 (0.02 %) |
116 (99.98 %) |
741,052 (2.98 %) |
411,477 (3.31 %) |
7,668,994 (30.14 %) |
34,560 (2.18 %) |
| 117 | olive python (hap2 2023) GCA_030867085.1 |
n/a | 13,421 (1.31 %) |
17,659 (2.08 %) |
n/a | 40.15 (99.66 %) |
93 (0.34 %) |
158 (99.66 %) |
733,358 (2.95 %) |
403,552 (3.04 %) |
7,746,871 (29.97 %) |
34,363 (2.08 %) |
| 118 | one-colored caecilian (2021) GCA_901765095.2 |
n/a | 14,569 (0.43 %) |
30,498 (1.16 %) |
n/a | 44.01 (98.99 %) |
2,452 (1.01 %) |
1,081 (100.00 %) |
1,894,383 (1.68 %) |
1,670,443 (3.30 %) |
22,207,143 (52.43 %) |
414,828 (3.91 %) |
| 119 | painted frog (alternate hap 2022) GCA_027410455.1 |
n/a | 7,223 (0.52 %) |
11,927 (1.11 %) |
n/a | 38.96 (100.00 %) |
76 (0.00 %) |
4,081 (100.00 %) |
988,792 (3.99 %) |
1,766,202 (10.24 %) |
9,974,001 (52.99 %) |
64,462 (1.33 %) |
| 120 | painted frog (primary hap 2022) GCA_027410445.1 |
n/a | 14,522 (0.54 %) |
21,861 (1.14 %) |
n/a | 39.52 (98.39 %) |
3,681 (1.61 %) |
1,318 (100.00 %) |
1,928,844 (4.34 %) |
3,684,477 (13.44 %) |
19,091,818 (55.21 %) |
127,760 (1.34 %) |
| 121 | Papuan ground boa (hap1 2024) GCA_035125265.1 |
n/a | 13,365 (1.26 %) |
17,388 (1.98 %) |
n/a | 41.07 (100.00 %) |
99 (0.00 %) |
279 (100.00 %) |
726,428 (2.81 %) |
331,756 (2.05 %) |
7,184,711 (33.57 %) |
51,973 (2.70 %) |
| 122 | Papuan ground boa (hap2 2024) GCA_035149785.1 |
n/a | 13,390 (1.26 %) |
17,496 (1.99 %) |
n/a | 41.07 (100.00 %) |
101 (0.00 %) |
150 (100.00 %) |
728,574 (2.82 %) |
348,605 (2.13 %) |
7,199,124 (33.55 %) |
51,807 (2.69 %) |
| 123 | pitted-shelled turtle (YL-2023 2023) GCA_033958435.1 |
n/a | 14,675 (1.05 %) |
16,697 (1.47 %) |
n/a | 45.55 (100.00 %) |
12 (0.00 %) |
134 (100.00 %) |
3,772,260 (47.94 %) |
322,081 (1.52 %) |
11,123,166 (34.14 %) |
129,645 (3.29 %) |
| 124 | plains spadefoot toad (alternate hap 2022) GCA_027382365.2 |
n/a | 10,906 (1.98 %) |
19,820 (4.33 %) |
n/a | 40.04 (100.00 %) |
n/a | 1,516 (100.00 %) |
390,896 (3.25 %) |
482,493 (7.83 %) |
4,361,670 (34.36 %) |
52,508 (3.70 %) |
| 125 | plains spadefoot toad (primary hap 2022) GCF_027358695.1 |
41,009 (4.67 %) |
13,912 (2.00 %) |
25,745 (4.50 %) |
n/a | 40.45 (99.61 %) |
102 (0.39 %) |
17 (100.00 %) |
497,976 (3.84 %) |
645,915 (10.08 %) |
5,232,342 (36.26 %) |
72,598 (4.35 %) |
| 126 | prickly gecko (False Entrance Well CCM8104 2023) GCF_032191835.1 |
35,366 (2.07 %) |
14,394 (0.79 %) |
23,371 (1.60 %) |
n/a | 44.78 (99.99 %) |
1,608 (0.01 %) |
661 (100.00 %) |
1,995,033 (8.75 %) |
823,022 (6.51 %) |
12,116,860 (46.84 %) |
117,191 (3.14 %) |
| 127 | Puerto Rican coqui (hap1 2024) GCA_035609145.1 |
n/a | 13,881 (0.57 %) |
32,313 (1.67 %) |
n/a | 44.91 (100.00 %) |
659 (0.00 %) |
963 (100.00 %) |
1,044,181 (1.98 %) |
1,442,189 (16.51 %) |
14,710,175 (54.00 %) |
501,931 (8.81 %) |
| 128 | Puerto Rican coqui (hap2 2024) GCA_035609135.1 |
n/a | 13,892 (0.57 %) |
32,011 (1.64 %) |
n/a | 44.93 (100.00 %) |
685 (0.00 %) |
843 (100.00 %) |
1,042,636 (2.00 %) |
1,430,690 (16.22 %) |
14,621,029 (53.91 %) |
503,166 (8.84 %) |
| 129 | red-eared slider turtle GCF_013100865.1 |
47,272 (3.27 %) |
13,909 (1.05 %) |
16,674 (1.54 %) |
n/a | 43.81 (96.14 %) |
25,390 (3.86 %) |
138 (100.00 %) |
1,686,633 (15.06 %) |
271,837 (0.81 %) |
10,802,900 (30.74 %) |
93,811 (1.90 %) |
| 130 | reedfish (alternate hap 2021) GCA_900700845.3 |
n/a | 11,382 (0.41 %) |
28,399 (1.33 %) |
n/a | 39.39 (99.99 %) |
17 (0.01 %) |
17,099 (99.99 %) |
6,708,926 (37.23 %) |
883,916 (2.81 %) |
16,745,782 (46.94 %) |
74,951 (1.15 %) |
| 131 | Reeves's turtle GCF_016161935.1 |
86,238 (3.40 %) |
15,165 (0.98 %) |
21,405 (1.66 %) |
n/a | 44.98 (100.00 %) |
398 (0.00 %) |
230 (100.00 %) |
1,854,279 (14.68 %) |
448,403 (2.11 %) |
11,329,581 (34.64 %) |
119,002 (2.82 %) |
| 132 | Ringneck snake (HBS135679 primary hap 2022) GCA_023053685.1 |
n/a | 13,357 (1.06 %) |
20,426 (1.94 %) |
n/a | 41.20 (100.00 %) |
723 (0.00 %) |
444 (100.00 %) |
1,451,537 (9.36 %) |
1,095,484 (10.35 %) |
7,870,309 (48.66 %) |
142,495 (4.04 %) |
| 133 | royal ground snake (hap1 2023) GCA_031021105.1 |
n/a | 13,327 (0.96 %) |
20,347 (1.68 %) |
n/a | 41.25 (99.99 %) |
1,391 (0.01 %) |
400 (100.00 %) |
1,983,903 (10.40 %) |
1,698,731 (7.29 %) |
9,084,707 (53.44 %) |
130,852 (4.47 %) |
| 134 | royal ground snake (hap2 2023) GCA_031021085.1 |
n/a | 13,845 (0.96 %) |
23,108 (1.86 %) |
n/a | 41.26 (100.00 %) |
n/a | 1,128 (100.00 %) |
2,008,682 (10.16 %) |
1,718,408 (7.36 %) |
9,467,451 (52.99 %) |
140,557 (4.65 %) |
| 135 | royal ground snake (hap3 2023) GCA_031001685.1 |
n/a | 12,606 (0.83 %) |
22,421 (1.62 %) |
n/a | 41.63 (100.00 %) |
n/a | 3,543 (100.00 %) |
2,080,172 (11.19 %) |
1,814,619 (9.22 %) |
8,889,119 (57.36 %) |
145,328 (4.63 %) |
| 136 | rufous frog (hap1 2023) GCA_031893025.1 |
n/a | 13,727 (0.84 %) |
24,896 (2.06 %) |
n/a | 42.95 (99.51 %) |
973 (0.49 %) |
2,266 (100.00 %) |
729,332 (2.15 %) |
1,402,564 (24.45 %) |
8,156,596 (55.96 %) |
175,180 (3.64 %) |
| 137 | rufous frog (hap2 2023) GCA_031893055.1 |
n/a | 13,538 (0.88 %) |
24,311 (2.15 %) |
n/a | 42.96 (99.07 %) |
976 (0.93 %) |
1,266 (100.00 %) |
711,895 (2.18 %) |
1,219,160 (21.56 %) |
7,988,458 (54.14 %) |
170,920 (3.48 %) |
| 138 | San Diegan legless lizard (HBS135921 alternate hap 2023) GCA_029215795.1 |
n/a | 14,039 (1.09 %) |
19,528 (1.85 %) |
n/a | 43.71 (100.00 %) |
31 (0.00 %) |
122 (100.00 %) |
1,307,065 (5.31 %) |
672,219 (3.50 %) |
9,949,858 (39.30 %) |
83,890 (3.97 %) |
| 139 | San Diegan legless lizard (HBS135921 primary hap 2023) GCA_029215775.1 |
n/a | 14,065 (1.09 %) |
19,430 (1.84 %) |
n/a | 43.71 (100.00 %) |
21 (0.00 %) |
155 (100.00 %) |
1,307,771 (5.32 %) |
672,054 (3.42 %) |
9,846,806 (39.03 %) |
83,805 (3.99 %) |
| 140 | San Diegan tiger whiptail (HBS 135688 2022) GCA_023333525.1 |
n/a | 10,727 (1.18 %) |
14,669 (1.99 %) |
n/a | 43.32 (100.00 %) |
39 (0.00 %) |
113 (100.00 %) |
741,937 (6.29 %) |
448,194 (5.60 %) |
7,227,870 (36.97 %) |
42,621 (2.15 %) |
| 141 | San Diegan tiger whiptail (alternate hap HBS 135688 2022) GCA_023333555.1 |
n/a | 13,288 (1.15 %) |
18,137 (1.98 %) |
n/a | 43.29 (100.00 %) |
44 (0.00 %) |
227 (100.00 %) |
909,096 (6.37 %) |
544,302 (5.70 %) |
8,280,652 (39.20 %) |
51,923 (2.21 %) |
| 142 | San Diego alligator lizard (HBS135686 alternate hap 2022) GCA_023053675.1 |
n/a | 14,107 (1.14 %) |
19,600 (1.95 %) |
n/a | 43.58 (100.00 %) |
27 (0.00 %) |
627 (100.00 %) |
1,563,836 (7.79 %) |
758,521 (4.15 %) |
9,213,810 (40.44 %) |
81,126 (2.79 %) |
| 143 | San Diego alligator lizard (HBS135686 primary hap 2022) GCA_023053635.1 |
n/a | 14,075 (1.15 %) |
19,587 (1.99 %) |
n/a | 43.52 (100.00 %) |
23 (0.00 %) |
85 (100.00 %) |
1,577,744 (7.81 %) |
774,690 (3.78 %) |
9,248,062 (40.42 %) |
80,183 (2.48 %) |
| 144 | San Diego ringneck snake (HBS135679 alternate hap 2022) GCA_023053665.1 |
n/a | 10,911 (1.00 %) |
17,586 (1.79 %) |
n/a | 41.17 (100.00 %) |
572 (0.00 %) |
2,064 (100.00 %) |
1,265,045 (10.30 %) |
989,149 (13.38 %) |
6,503,035 (50.62 %) |
123,274 (4.17 %) |
| 145 | sand lizard (alternate hap 2019) GCA_009819545.1 |
n/a | 14,226 (1.28 %) |
25,396 (2.33 %) |
n/a | 43.80 (100.00 %) |
2 (0.00 %) |
12,662 (100.00 %) |
1,001,433 (5.27 %) |
445,157 (1.79 %) |
7,227,826 (34.26 %) |
80,300 (2.76 %) |
| 146 | sand lizard (primary hap 2019) GCF_009819535.1 |
41,701 (3.64 %) |
14,350 (1.48 %) |
19,231 (2.45 %) |
32,804 (4.14 %) |
43.75 (99.75 %) |
379 (0.25 %) |
29 (100.00 %) |
975,474 (5.32 %) |
425,414 (1.76 %) |
7,135,165 (34.49 %) |
76,053 (2.68 %) |
| 147 | Sardinian treefrog (hap1 2023 refseq) GCF_029499605.1 |
108,406 (1.98 %) |
13,959 (0.46 %) |
n/a | n/a | 43.90 (99.99 %) |
2,297 (0.01 %) |
3,474 (100.00 %) |
1,903,654 (2.85 %) |
2,970,691 (16.56 %) |
15,354,577 (64.31 %) |
652,708 (8.36 %) |
| 148 | Sardinian treefrog (hap2 2023) GCA_029493135.1 |
n/a | 14,077 (0.47 %) |
36,608 (1.60 %) |
n/a | 43.86 (99.99 %) |
2,097 (0.01 %) |
2,802 (100.00 %) |
1,819,971 (2.73 %) |
2,865,173 (16.12 %) |
15,335,602 (63.85 %) |
651,438 (8.09 %) |
| 149 | Schlegel's Japanese gecko GCF_001447785.1 |
25,177 (1.78 %) |
14,549 (0.82 %) |
28,002 (1.69 %) |
n/a | 45.48 (96.46 %) |
143,970 (3.54 %) |
335,470 (96.46 %) |
889,760 (2.21 %) |
666,492 (2.83 %) |
12,865,811 (39.14 %) |
160,022 (2.80 %) |
| 150 | sea lamprey (alternate hap 2020) GCA_010993595.1 |
n/a | 6,180 (0.71 %) |
31,191 (4.14 %) |
n/a | 48.30 (100.00 %) |
11 (0.00 %) |
4,064 (100.00 %) |
1,494,745 (38.42 %) |
891,392 (20.02 %) |
4,259,383 (49.70 %) |
147,499 (35.87 %) |
| 151 | sea lamprey (primary hap 2020) GCF_010993605.1 |
41,241 (6.50 %) |
7,638 (0.70 %) |
36,336 (4.06 %) |
83,714 (10.03 %) |
48.31 (98.62 %) |
930 (1.38 %) |
1,434 (100.00 %) |
1,920,851 (39.36 %) |
1,194,165 (21.47 %) |
5,320,620 (50.50 %) |
178,590 (35.88 %) |
| 152 | sharpnose sevengill shark (hap1 2024) GCA_035084215.1 |
n/a | 12,780 (0.49 %) |
24,543 (1.38 %) |
n/a | 44.37 (99.99 %) |
1,834 (0.01 %) |
1,880 (100.00 %) |
597,122 (2.28 %) |
1,112,137 (17.97 %) |
12,108,056 (57.48 %) |
117,585 (3.42 %) |
| 153 | sharpnose sevengill shark (hap2 2024) GCA_035084135.1 |
n/a | 12,603 (0.52 %) |
23,419 (1.42 %) |
n/a | 44.36 (99.99 %) |
1,695 (0.01 %) |
2,889 (99.99 %) |
559,171 (2.08 %) |
973,228 (15.01 %) |
11,768,442 (55.69 %) |
108,468 (3.25 %) |
| 154 | smaller spotted catshark (alternate hap 2021) GCA_902713625.2 |
n/a | 11,589 (0.31 %) |
32,603 (1.10 %) |
n/a | 47.54 (100.00 %) |
6 (0.00 %) |
26,655 (100.00 %) |
1,346,532 (1.83 %) |
1,273,326 (5.35 %) |
19,727,443 (51.55 %) |
427,693 (8.25 %) |
| 155 | smaller spotted catshark (v1.2 primary hap 2021 genbank) GCA_902713615.2 |
n/a | 12,587 (0.36 %) |
23,986 (1.08 %) |
n/a | 47.65 (98.48 %) |
7,146 (1.52 %) |
645 (100.00 %) |
1,451,634 (1.94 %) |
1,448,619 (6.25 %) |
20,884,741 (51.41 %) |
456,658 (8.18 %) |
| 156 | smalltooth sawfish (primary hap 2019 refseq) GCF_009764475.1 |
40,257 (2.94 %) |
12,157 (0.69 %) |
18,627 (1.55 %) |
n/a | 42.38 (99.09 %) |
698 (0.91 %) |
172 (100.00 %) |
4,824,261 (54.91 %) |
391,531 (1.52 %) |
11,282,260 (38.19 %) |
45,398 (1.34 %) |
| 157 | smalltooth sawfish (alternate hap 2019) GCA_009764485.1 |
n/a | 9,086 (0.58 %) |
20,468 (1.57 %) |
n/a | 42.65 (100.00 %) |
n/a | 10,892 (100.00 %) |
315,695 (1.23 %) |
320,148 (1.73 %) |
8,305,059 (38.33 %) |
37,147 (1.43 %) |
| 158 | Southern alligator lizard (San Diego HBS135686 primary hap 2024) GCA_023053635.2 |
n/a | 14,093 (1.15 %) |
19,338 (1.96 %) |
n/a | 43.52 (100.00 %) |
73 (0.00 %) |
35 (100.00 %) |
1,577,751 (7.81 %) |
774,117 (3.78 %) |
9,248,069 (40.42 %) |
80,183 (2.48 %) |
| 159 | Southern Pacific rattlesnake (HBS135844 alternate hap 2022) GCA_024509165.1 |
n/a | 13,381 (1.17 %) |
19,541 (1.96 %) |
n/a | 39.82 (100.00 %) |
34 (0.00 %) |
340 (100.00 %) |
1,137,408 (8.97 %) |
740,163 (7.59 %) |
7,520,676 (44.43 %) |
47,268 (1.61 %) |
| 160 | Southern Pacific rattlesnake (HBS135844 primary hap 2022) GCA_024509115.1 |
n/a | 12,626 (1.16 %) |
18,965 (1.95 %) |
n/a | 40.05 (99.99 %) |
443 (0.01 %) |
1,139 (99.99 %) |
1,095,605 (9.34 %) |
713,734 (8.45 %) |
6,942,208 (44.93 %) |
46,378 (2.04 %) |
| 161 | Southwestern pond turtle (HBS135687 alternate hap 2022) GCA_023634275.1 |
n/a | 14,998 (0.98 %) |
20,146 (1.60 %) |
n/a | 44.84 (100.00 %) |
64 (0.00 %) |
324 (100.00 %) |
1,562,785 (12.68 %) |
484,638 (2.00 %) |
11,089,433 (36.29 %) |
143,601 (3.21 %) |
| 162 | Southwestern pond turtle (HBS135687 primary hap 2022) GCA_023634205.1 |
n/a | 14,971 (0.99 %) |
19,756 (1.60 %) |
n/a | 44.77 (100.00 %) |
53 (0.00 %) |
106 (100.00 %) |
1,545,155 (12.63 %) |
465,697 (1.95 %) |
11,181,681 (36.13 %) |
142,383 (3.05 %) |
| 163 | spotted gar GCF_000242695.1 |
45,681 (8.02 %) |
13,054 (1.95 %) |
46,362 (15.00 %) |
n/a | 39.59 (91.93 %) |
43,276 (8.08 %) |
45,199 (91.92 %) |
203,614 (1.02 %) |
123,247 (0.80 %) |
5,837,321 (22.82 %) |
38,507 (2.24 %) |
| 164 | spotted ratfish (hap1 2024) GCA_035084065.1 |
n/a | 10,920 (1.26 %) |
14,403 (2.60 %) |
n/a | 43.46 (99.96 %) |
2,088 (0.04 %) |
1,042 (100.00 %) |
3,325,883 (44.48 %) |
604,780 (8.87 %) |
5,926,808 (44.92 %) |
64,249 (4.00 %) |
| 165 | spotted ratfish (hap2 2024) GCA_035084275.1 |
n/a | 10,694 (1.38 %) |
13,221 (2.62 %) |
n/a | 42.85 (99.96 %) |
1,952 (0.04 %) |
532 (100.00 %) |
3,108,151 (44.68 %) |
498,592 (6.00 %) |
5,634,132 (43.16 %) |
50,785 (2.94 %) |
| 166 | sterlet (maternal hap 2022 refseq) GCF_902713425.1 |
110,154 (7.62 %) |
25,364 (1.76 %) |
40,715 (4.06 %) |
n/a | 40.11 (100.00 %) |
433 (0.00 %) |
1,731 (100.00 %) |
4,055,215 (43.14 %) |
1,124,096 (10.13 %) |
9,426,172 (41.81 %) |
64,522 (2.85 %) |
| 167 | sterlet (paternal fAciRut3.2 2022) GCA_902713435.2 |
n/a | 24,717 (1.73 %) |
40,151 (4.13 %) |
74,807 (5.54 %) |
40.09 (99.99 %) |
475 (0.01 %) |
1,517 (100.00 %) |
1,844,596 (9.77 %) |
1,119,340 (9.88 %) |
9,372,934 (41.58 %) |
65,007 (2.74 %) |
| 168 | sterlet (v2 Gen_M01 2020) GCF_010645085.2 |
73,195 (5.77 %) |
24,716 (1.77 %) |
39,692 (3.97 %) |
n/a | 39.75 (99.93 %) |
6,251 (0.07 %) |
3,368 (100.00 %) |
3,869,521 (43.26 %) |
1,093,425 (6.82 %) |
9,976,052 (39.33 %) |
60,325 (1.97 %) |
| 169 | Suwannee snapping turtle (hap1 2023) GCA_033296515.1 |
n/a | 14,713 (1.06 %) |
18,602 (1.60 %) |
n/a | 44.58 (100.00 %) |
290 (0.00 %) |
366 (100.00 %) |
1,352,115 (12.17 %) |
388,630 (1.94 %) |
10,550,154 (33.42 %) |
113,023 (3.09 %) |
| 170 | Suwannee snapping turtle (hap2 2023) GCA_033349115.1 |
n/a | 12,226 (1.01 %) |
14,117 (1.42 %) |
n/a | 43.77 (100.00 %) |
361 (0.00 %) |
199 (100.00 %) |
1,202,345 (11.93 %) |
304,674 (1.45 %) |
9,752,924 (32.81 %) |
92,993 (2.75 %) |
| 171 | thorny skate (primary hap CabotCenter1 v1.1 2020) GCF_010909765.2 |
45,968 (2.40 %) |
11,437 (0.60 %) |
26,341 (1.72 %) |
n/a | 44.30 (92.54 %) |
3,753 (7.46 %) |
957 (100.00 %) |
888,163 (2.58 %) |
1,176,348 (3.79 %) |
9,964,038 (52.25 %) |
242,676 (4.73 %) |
| 172 | thorny skate (alternate hap CabotCenter1 2020) GCA_010909745.1 |
n/a | 5,885 (0.35 %) |
24,457 (1.45 %) |
n/a | 44.61 (100.00 %) |
3 (0.00 %) |
21,995 (100.00 %) |
553,415 (2.65 %) |
761,469 (4.53 %) |
6,043,769 (57.75 %) |
159,552 (5.54 %) |
| 173 | three-toed box turtle GCF_002925995.2 |
35,807 (2.28 %) |
16,429 (1.00 %) |
26,460 (1.60 %) |
33,673 (1.75 %) |
44.26 (94.87 %) |
53,635 (5.13 %) |
48,497 (100.00 %) |
2,007,347 (15.00 %) |
351,871 (0.86 %) |
12,385,245 (31.74 %) |
138,405 (2.40 %) |
| 174 | tiger rattlesnake GCF_016545835.1 |
58,085 (4.72 %) |
13,597 (1.18 %) |
20,553 (2.03 %) |
n/a | 39.88 (100.00 %) |
n/a | 4,228 (100.00 %) |
1,142,521 (7.92 %) |
739,406 (5.17 %) |
7,749,366 (42.91 %) |
45,588 (1.61 %) |
| 175 | tiny Cayenne caecilian GCF_901765095.1 |
41,333 (1.27 %) |
14,569 (0.43 %) |
30,499 (1.16 %) |
n/a | 44.01 (98.99 %) |
2,452 (1.01 %) |
1,081 (100.00 %) |
1,835,191 (1.59 %) |
1,670,443 (3.30 %) |
22,207,145 (52.43 %) |
414,828 (3.91 %) |
| 176 | tiny Cayenne caecilian (alternate hap 2019) GCA_901765105.1 |
n/a | 12,197 (0.36 %) |
33,747 (1.15 %) |
n/a | 43.95 (100.00 %) |
1 (0.00 %) |
23,871 (100.00 %) |
1,453,442 (1.57 %) |
1,309,062 (3.23 %) |
17,953,416 (52.19 %) |
326,452 (3.86 %) |
| 177 | Townsend's dwarf sphaero (gecko TG3544 2022) GCF_021028975.2 |
41,266 (3.35 %) |
13,505 (1.05 %) |
19,294 (1.78 %) |
n/a | 45.92 (99.99 %) |
2,590 (0.01 %) |
1,742 (100.00 %) |
938,800 (8.81 %) |
627,869 (5.78 %) |
9,306,892 (38.57 %) |
91,919 (2.91 %) |
| 178 | tropical clawed frog GCF_000004195.4 |
50,557 (4.71 %) |
14,679 (1.97 %) |
20,138 (2.76 %) |
52,028 (5.20 %) |
40.73 (99.80 %) |
684 (0.20 %) |
167 (100.00 %) |
2,289,618 (34.82 %) |
708,472 (13.14 %) |
6,816,377 (41.73 %) |
52,647 (1.35 %) |
| 179 | two-lined caecilian (v1.2 2021 genbank) GCA_901001135.2 |
n/a | 14,449 (0.38 %) |
40,573 (1.31 %) |
n/a | 44.40 (99.36 %) |
3,573 (0.64 %) |
1,330 (100.00 %) |
2,274,606 (1.91 %) |
2,036,107 (4.34 %) |
29,400,957 (44.09 %) |
602,911 (6.66 %) |
| 180 | two-lined caecilian (alternate hap 2019) GCA_901001175.1 |
n/a | 13,456 (0.33 %) |
47,486 (1.34 %) |
n/a | 44.33 (100.00 %) |
2 (0.00 %) |
27,233 (100.00 %) |
1,968,437 (1.91 %) |
1,716,136 (3.97 %) |
25,847,315 (43.76 %) |
523,234 (6.59 %) |
| 181 | valley gartersnake (HBS 135685 alternate hap 2023) GCA_029207655.1 |
n/a | 13,267 (1.12 %) |
21,667 (2.38 %) |
n/a | 41.05 (100.00 %) |
403 (0.00 %) |
226 (100.00 %) |
1,344,601 (8.29 %) |
1,035,785 (7.00 %) |
8,436,473 (45.10 %) |
82,750 (2.69 %) |
| 182 | valley gartersnake (HBS 135685 primary hap 2023) GCA_029207665.1 |
n/a | 12,430 (1.10 %) |
20,286 (2.36 %) |
n/a | 41.12 (100.00 %) |
446 (0.00 %) |
413 (100.00 %) |
1,299,478 (9.62 %) |
1,018,398 (8.41 %) |
7,790,758 (46.28 %) |
81,352 (2.71 %) |
| 183 | viviparous/common lizard GCF_011800845.1 |
47,034 (5.17 %) |
14,311 (1.43 %) |
20,571 (2.35 %) |
32,442 (3.15 %) |
43.97 (97.04 %) |
51,275 (2.97 %) |
25,252 (100.00 %) |
949,801 (5.41 %) |
498,048 (1.91 %) |
7,668,731 (34.21 %) |
88,947 (2.62 %) |
| 184 | West African lungfish GCF_019279795.1 |
41,847 (0.19 %) |
n/a | n/a | n/a | 40.21 (97.52 %) |
n/a | 12,668 (100.00 %) |
16,163,808 (2.67 %) |
13,992,750 (5.30 %) |
n/a | 502,751 (0.52 %) |
| 185 | western fence lizard (IW3139 2022) GCA_023333635.1 |
n/a | 26,067 (1.12 %) |
46,795 (2.72 %) |
n/a | 41.28 (100.00 %) |
51 (0.00 %) |
1,771 (100.00 %) |
2,075,491 (6.60 %) |
1,603,401 (7.34 %) |
15,565,775 (40.61 %) |
184,134 (3.16 %) |
| 186 | western fence lizard (IW3139 primary hap 2022) GCA_023333645.1 |
n/a | 24,835 (1.20 %) |
42,146 (2.78 %) |
n/a | 41.16 (100.00 %) |
51 (0.00 %) |
659 (100.00 %) |
1,842,497 (6.34 %) |
1,335,245 (6.14 %) |
15,103,683 (37.84 %) |
158,311 (2.92 %) |
| 187 | western painted turtle (v5 RCT428 2020) GCF_000241765.5 |
64,782 (3.76 %) |
15,184 (1.08 %) |
21,463 (1.64 %) |
n/a | 44.19 (87.54 %) |
184,311 (12.48 %) |
259,085 (87.52 %) |
4,079,404 (44.68 %) |
316,232 (0.93 %) |
11,848,718 (27.60 %) |
103,623 (1.74 %) |
| 188 | western red-tailed skink (HBS 135693 alternate hap 2022) GCA_026170595.1 |
n/a | 14,019 (1.31 %) |
17,620 (2.13 %) |
n/a | 45.76 (100.00 %) |
15 (0.00 %) |
39 (100.00 %) |
862,216 (4.87 %) |
557,627 (3.17 %) |
8,002,559 (36.95 %) |
183,292 (4.74 %) |
| 189 | western red-tailed skink (HBS 135693 primary hap 2022) GCA_026170395.1 |
n/a | 13,064 (1.32 %) |
16,407 (2.16 %) |
n/a | 45.81 (100.00 %) |
12 (0.00 %) |
50 (100.00 %) |
794,996 (4.86 %) |
514,021 (3.46 %) |
7,339,914 (37.02 %) |
168,847 (4.76 %) |
| 190 | western spadefoot toad (hap1 HBS 135690 2023) GCA_029215705.1 |
n/a | 13,914 (1.72 %) |
27,496 (4.28 %) |
n/a | 40.81 (100.00 %) |
198 (0.00 %) |
677 (100.00 %) |
600,622 (4.04 %) |
783,931 (10.70 %) |
5,362,245 (41.82 %) |
100,334 (5.41 %) |
| 191 | western spadefoot toad (hap2 HBS 135690 2023) GCA_029215755.1 |
n/a | 13,991 (1.72 %) |
27,685 (4.24 %) |
n/a | 40.90 (100.00 %) |
190 (0.00 %) |
541 (100.00 %) |
620,188 (5.00 %) |
800,411 (11.19 %) |
5,338,766 (42.25 %) |
101,603 (5.32 %) |
| 192 | western terrestrial garter snake (alternate hap 2019) GCA_009769695.1 |
n/a | 13,101 (0.94 %) |
24,980 (1.75 %) |
n/a | 41.02 (99.93 %) |
19 (0.07 %) |
13,642 (99.93 %) |
1,410,212 (7.70 %) |
1,080,385 (4.56 %) |
9,112,844 (43.96 %) |
91,606 (2.53 %) |
| 193 | western terrestrial garter snake (primary hap 2019) GCF_009769535.1 |
33,492 (3.42 %) |
13,074 (1.13 %) |
18,807 (1.93 %) |
31,660 (2.61 %) |
40.95 (97.72 %) |
1,518 (2.28 %) |
365 (100.00 %) |
1,271,255 (7.73 %) |
979,057 (4.48 %) |
8,396,200 (42.63 %) |
81,829 (2.47 %) |
| 194 | whale shark (Ralph 2017 Emory U) GCF_001642345.1 |
31,857 (1.52 %) |
11,884 (0.43 %) |
28,482 (1.15 %) |
n/a | 41.78 (100.00 %) |
900,650 (0.03 %) |
57,334 (100.00 %) |
413,201 (1.16 %) |
426,542 (2.75 %) |
16,418,143 (38.85 %) |
35,192 (0.95 %) |
| 195 | whale shark (14 2022 Squalomix) GCF_021869965.1 |
42,052 (2.43 %) |
12,059 (0.52 %) |
18,460 (1.22 %) |
38,963 (1.77 %) |
41.51 (91.61 %) |
95,208 (8.40 %) |
16,684 (100.00 %) |
402,747 (0.97 %) |
389,119 (1.49 %) |
15,298,245 (34.14 %) |
21,050 (0.30 %) |
| 196 | whitespotted bambooshark GCF_004010195.1 |
54,886 (2.03 %) |
12,065 (0.44 %) |
19,805 (1.08 %) |
n/a | 42.06 (94.27 %) |
156,554 (5.74 %) |
101,977 (100.00 %) |
559,291 (0.96 %) |
641,094 (3.66 %) |
19,566,199 (38.21 %) |
28,353 (0.49 %) |
| 197 | yellowpond turtle (Southern MM-2020 2021) GCF_020497125.1 |
65,526 (3.36 %) |
15,560 (0.99 %) |
21,233 (1.66 %) |
n/a | 45.17 (96.24 %) |
1,041 (3.76 %) |
595 (100.00 %) |
1,904,996 (14.25 %) |
468,779 (2.21 %) |
11,403,005 (33.86 %) |
135,646 (3.23 %) |
| 198 | zebra shark (6-17 2022 Squalomix) GCF_022316705.1 |
48,447 (2.64 %) |
11,974 (0.57 %) |
15,459 (1.26 %) |
n/a | 41.78 (93.81 %) |
87,372 (6.20 %) |
1,266 (100.00 %) |
392,676 (0.96 %) |
348,115 (1.22 %) |
15,176,805 (32.93 %) |
20,647 (0.38 %) |
| 199 | zebra shark (hap1 2023 refseq) GCF_030684315.1 |
58,105 (2.61 %) |
12,291 (0.48 %) |
16,769 (1.14 %) |
n/a | 43.41 (99.47 %) |
1,159 (0.53 %) |
835 (100.00 %) |
8,087,543 (64.92 %) |
798,373 (9.17 %) |
14,838,773 (42.39 %) |
45,284 (1.67 %) |
| 200 | zebra shark (hap2 2023) GCA_030684295.1 |
n/a | 12,516 (0.44 %) |
17,465 (1.05 %) |
n/a | 44.66 (99.65 %) |
1,203 (0.35 %) |
2,136 (99.65 %) |
8,278,458 (59.68 %) |
903,434 (18.42 %) |
14,975,344 (48.25 %) |
48,378 (1.60 %) |
| TOTALS: | total assembly count 200 | |||||||||||
| Additional hubs with collections of assemblies | |||
|---|---|---|---|
| Collection | Hub index pages: | Assembly statistics: | Track statistics: |
| Primates | 207 assemblies | assembly stats | track stats |
| Mammals | 508 assemblies | assembly stats | track stats |
| Birds | 327 assemblies | assembly stats | track stats |
| Fishes | 358 assemblies | assembly stats | track stats |
| other vertebrates | 200 assemblies | assembly stats | track stats |
| Invertebrates | 644 assemblies | assembly stats | track stats |
| Plants | 252 assemblies | assembly stats | track stats |
| Fungi | 612 assemblies | assembly stats | track stats |
| Viruses | 265 assemblies | assembly stats | track stats |
| Bacteria | 74 assemblies | assembly stats | track stats |
| legacy/superseded | 437 assemblies | assembly stats | track stats |
| collections below are subsets of the assemblies above | |||
| VGP - Vertebrate Genome Project | 796 assemblies | assembly stats | track stats |
| CCGP - The California Conservation Genomics Project | 126 assemblies | assembly stats | track stats |
| HPRC - Human Pangenome Reference Consortium | 96 assemblies | assembly stats | track stats |