Vertebrate Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub access, assembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser		 ncbiRefSeq xenoRefGene augustus
genes		 Ensembl
genes		 gc5 base gaps assembly
sequences		 Repeat
Masker		 TRF
simpleRepeat		 window
Masker		 cpg
islands
1 African clawed frog
GCF_001663975.1		 61,172
(41.31 %)		 23,407
(1.77 %)		 47,466
(1.76 %)		 n/a 38.98
(88.63 %)		 216,028
(11.39 %)		 324,061
(88.61 %)		 3,739,339
(33.13 %)		 680,419
(2.28 %)		 13,887,586
(35.94 %)		 85,680
(0.94 %)
2 American alligator
GCF_000281125.3		 51,026
(51.68 %)		 14,436
(1.06 %)		 74,897
(2.32 %)		 n/a 44.30
(97.86 %)		 236,641
(2.19 %)		 7,094
(100.00 %)		 2,920,573
(36.55 %)		 291,584
(0.69 %)		 12,464,318
(27.91 %)		 35,529
(1.26 %)
3 Australian saltwater crocodile
GCF_001723895.1		 34,103
(45.49 %)		 12,491
(1.05 %)		 61,366
(2.05 %)		 32,407
(1.81 %)		 43.90
(94.72 %)		 97,039
(5.30 %)		 70
(100.00 %)		 2,549,472
(36.54 %)		 215,190
(0.56 %)		 11,196,176
(26.22 %)		 26,646
(0.97 %)
4 Burmese python
GCF_000186305.1		 n/a 13,712
(1.31 %)		 42,039
(2.12 %)		 n/a 39.61
(96.54 %)		 235,132
(3.52 %)		 274,244
(96.48 %)		 752,295
(3.27 %)		 409,033
(2.06 %)		 8,318,382
(25.30 %)		 29,212
(1.10 %)
5 tiny Cayenne caecilian
GCF_901765095.1		 41,346
(53.62 %)		 14,572
(0.43 %)		 88,603
(1.29 %)		 n/a 44.01
(98.99 %)		 2,452
(1.01 %)		 1,081
(100.00 %)		 1,847,289
(1.60 %)		 1,670,443
(3.30 %)		 22,207,145
(52.43 %)		 414,828
(3.91 %)
6 central bearded dragon
GCF_900067755.1		 42,304
(48.88 %)		 13,858
(1.18 %)		 48,027
(2.11 %)		 n/a 41.81
(96.03 %)		 90,546
(3.99 %)		 13,749
(100.00 %)		 862,124
(3.60 %)		 570,849
(3.46 %)		 9,494,309
(29.78 %)		 48,137
(1.31 %)
7 Chinese alligator
GCF_000455745.1		 49,897
(44.05 %)		 14,428
(1.00 %)		 72,676
(2.16 %)		 n/a 44.49
(96.86 %)		 167,965
(3.17 %)		 177,282
(96.83 %)		 2,998,039
(38.47 %)		 346,310
(1.06 %)		 12,332,417
(29.19 %)		 46,636
(1.17 %)
8 Chinese soft-shelled turtle
GCF_000230535.1		 45,454
(49.60 %)		 13,725
(0.95 %)		 88,745
(2.61 %)		 n/a 44.42
(95.68 %)		 185,476
(4.35 %)		 205,380
(95.65 %)		 1,284,603
(11.20 %)		 455,163
(3.06 %)		 11,234,886
(32.34 %)		 95,997
(2.06 %)
9 coelacanth
GCF_000225785.1		 40,776
(45.19 %)		 13,818
(0.81 %)		 37,802
(1.29 %)		 n/a 41.15
(76.37 %)		 269,010
(23.67 %)		 291,829
(76.33 %)		 4,622,378
(45.80 %)		 571,917
(1.19 %)		 14,630,157
(34.87 %)		 42,857
(0.54 %)
10 common wall lizard
GCF_004329235.1		 56,519
(54.27 %)		 14,447
(1.36 %)		 42,702
(2.32 %)		 39,427
(3.20 %)		 44.18
(99.81 %)		 4,085
(0.19 %)		 2,161
(100.00 %)		 1,135,168
(8.42 %)		 506,669
(2.12 %)		 7,474,116
(36.15 %)		 122,507
(3.69 %)
11 eastern brown snake
GCF_900518735.1		 34,614
(43.57 %)		 13,629
(1.22 %)		 41,211
(1.92 %)		 28,806
(2.37 %)		 39.84
(97.54 %)		 59,472
(2.47 %)		 28,550
(100.00 %)		 1,064,921
(5.89 %)		 663,810
(2.41 %)		 8,140,554
(39.61 %)		 52,895
(2.12 %)
12 elephant shark
GCF_000165045.1		 30,695
(52.05 %)		 11,646
(1.60 %)		 28,786
(2.60 %)		 n/a 42.34
(96.16 %)		 46,232
(3.85 %)		 67,421
(96.15 %)		 1,926,864
(38.18 %)		 330,698
(2.60 %)		 5,549,534
(36.65 %)		 35,561
(2.16 %)
13 high Himalaya frog
GCF_000935625.1		 26,122
(42.57 %)		 13,690
(0.93 %)		 62,075
(2.44 %)		 n/a 42.55
(96.32 %)		 122,325
(3.70 %)		 147,513
(96.30 %)		 539,604
(1.38 %)		 794,563
(5.48 %)		 11,465,450
(37.44 %)		 219,772
(3.92 %)
14 gharial
GCF_001723915.1		 32,297
(43.73 %)		 12,195
(1.03 %)		 55,598
(1.83 %)		 n/a 43.95
(73.60 %)		 248,526
(26.44 %)		 81
(100.00 %)		 2,665,007
(36.56 %)		 243,334
(0.51 %)		 11,279,606
(20.80 %)		 26,651
(0.60 %)
15 Goodes thornscrub tortoise
GCF_007399415.2		 57,455
(51.33 %)		 14,859
(1.00 %)		 79,415
(2.33 %)		 n/a 44.14
(98.71 %)		 562
(1.29 %)		 383
(100.00 %)		 1,699,240
(13.65 %)		 387,796
(2.00 %)		 11,572,827
(33.36 %)		 71,687
(2.29 %)
16 green anole
GCF_000090745.1		 38,109
(47.48 %)		 13,022
(1.08 %)		 36,350
(1.68 %)		 n/a 40.32
(94.57 %)		 35,533
(5.44 %)		 41,987
(94.56 %)		 3,046,789
(35.84 %)		 702,538
(2.99 %)		 8,199,653
(39.69 %)		 42,151
(1.18 %)
17 Green sea turtle
GCF_000344595.1		 31,786
(42.84 %)		 14,569
(1.02 %)		 77,496
(2.26 %)		 n/a 43.49
(95.57 %)		 134,344
(4.44 %)		 274,367
(95.56 %)		 1,713,239
(14.26 %)		 317,642
(2.08 %)		 11,732,990
(28.32 %)		 36,782
(0.70 %)
18 Schlegel's Japanese gecko
GCF_001447785.1		 25,190
(34.88 %)		 14,559
(0.81 %)		 93,071
(2.44 %)		 n/a 45.48
(96.46 %)		 143,970
(3.54 %)		 335,470
(96.46 %)		 1,628,593
(7.27 %)		 666,501
(2.83 %)		 12,865,811
(39.14 %)		 160,022
(2.80 %)
19 mainland tiger snake
GCF_900518725.1		 34,251
(40.69 %)		 13,447
(1.15 %)		 41,323
(1.81 %)		 30,892
(1.93 %)		 39.72
(95.17 %)		 79,478
(4.84 %)		 52,414
(100.00 %)		 1,129,940
(6.04 %)		 711,408
(2.47 %)		 8,047,065
(40.24 %)		 61,669
(2.47 %)
20 reedfish
GCF_900747795.1		 40,558
(43.70 %)		 13,160
(0.46 %)		 48,082
(1.04 %)		 34,872
(1.34 %)		 39.44
(93.75 %)		 5,614
(6.25 %)		 1,885
(100.00 %)		 1,852,335
(2.79 %)		 1,018,031
(2.36 %)		 20,081,632
(44.56 %)		 88,254
(1.06 %)
21 garter snake
GCF_001077635.1		 26,656
(34.23 %)		 11,630
(1.25 %)		 38,102
(2.42 %)		 n/a 39.92
(78.84 %)		 246,220
(21.21 %)		 175,977
(78.79 %)		 779,428
(5.61 %)		 543,646
(2.36 %)		 6,946,141
(27.08 %)		 36,264
(1.27 %)
22 brown spotted pit viper
GCF_001527695.2		 24,336
(32.76 %)		 14,048
(1.20 %)		 51,679
(2.38 %)		 n/a 39.97
(92.15 %)		 115,571
(7.86 %)		 167,851
(92.14 %)		 1,291,449
(8.96 %)		 819,247
(3.70 %)		 8,328,674
(35.16 %)		 68,858
(2.06 %)
23 spotted gar
GCF_000242695.1		 45,694
(59.51 %)		 13,054
(1.95 %)		 56,879
(5.06 %)		 n/a 39.59
(91.93 %)		 43,276
(8.08 %)		 45,199
(91.92 %)		 217,619
(1.18 %)		 123,247
(0.80 %)		 5,837,321
(22.82 %)		 38,507
(2.24 %)
24 tropical clawed frog
GCF_000004195.4		 50,570
(51.54 %)		 14,675
(1.95 %)		 34,624
(2.33 %)		 n/a 40.73
(99.80 %)		 684
(0.20 %)		 167
(100.00 %)		 2,420,417
(35.06 %)		 708,472
(13.14 %)		 6,816,377
(41.73 %)		 52,647
(1.35 %)
25 two-lined caecilian
GCF_901001135.1		 56,630
(53.09 %)		 14,452
(0.38 %)		 180,328
(2.13 %)		 n/a 44.40
(99.36 %)		 3,573
(0.64 %)		 1,330
(100.00 %)		 2,273,617
(1.93 %)		 2,036,108
(4.34 %)		 29,400,958
(44.09 %)		 602,912
(6.66 %)
26 whale shark
GCF_001642345.1		 31,857
(30.57 %)		 11,890
(0.43 %)		 41,823
(0.87 %)		 n/a 41.78
(100.00 %)		 900,650
(0.03 %)		 57,334
(100.00 %)		 420,252
(1.14 %)		 426,542
(2.75 %)		 16,418,143
(38.85 %)		 35,192
(0.95 %)
TOTALS:total assembly count 26

Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates