Vertebrate Genomes assembly hubs, track statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub accessassembly statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
The numbers are: item count (percent coverage)
Except for the gc5Base column which is: overall GC % average (percent coverage)
count common name
link to genome browser
ncbiRefSeq xenoRefGene augustus
genes
Ensembl
genes
gc5 base gaps assembly
sequences
Repeat
Masker
TRF
simpleRepeat
window
Masker
cpg
islands
1 African clawed frog
GCF_001663975.1
61,172
(41.31 %)
23,407
(1.77 %)
47,466
(1.76 %)
n/a 38.98
(88.63 %)
216,028
(11.39 %)
324,061
(88.61 %)
3,739,339
(33.13 %)
680,419
(2.28 %)
13,887,586
(35.94 %)
85,680
(0.94 %)
2 American alligator
GCF_000281125.3
51,026
(51.68 %)
14,436
(1.06 %)
74,897
(2.32 %)
n/a 44.30
(97.86 %)
236,641
(2.19 %)
7,094
(100.00 %)
2,920,573
(36.55 %)
291,584
(0.69 %)
12,464,318
(27.91 %)
35,529
(1.26 %)
3 Australian saltwater crocodile
GCF_001723895.1
34,103
(45.49 %)
12,491
(1.05 %)
61,366
(2.05 %)
32,407
(1.81 %)
43.90
(94.72 %)
97,039
(5.30 %)
70
(100.00 %)
2,549,472
(36.54 %)
215,190
(0.56 %)
11,196,176
(26.22 %)
26,646
(0.97 %)
4 Burmese python
GCF_000186305.1
n/a 13,712
(1.31 %)
42,039
(2.12 %)
n/a 39.61
(96.54 %)
235,132
(3.52 %)
274,244
(96.48 %)
752,295
(3.27 %)
409,033
(2.06 %)
8,318,382
(25.30 %)
29,212
(1.10 %)
5 tiny Cayenne caecilian
GCF_901765095.1
41,346
(53.62 %)
14,572
(0.43 %)
88,603
(1.29 %)
n/a 44.01
(98.99 %)
2,452
(1.01 %)
1,081
(100.00 %)
1,847,289
(1.60 %)
1,670,443
(3.30 %)
22,207,145
(52.43 %)
414,828
(3.91 %)
6 central bearded dragon
GCF_900067755.1
42,304
(48.88 %)
13,858
(1.18 %)
48,027
(2.11 %)
n/a 41.81
(96.03 %)
90,546
(3.99 %)
13,749
(100.00 %)
862,124
(3.60 %)
570,849
(3.46 %)
9,494,309
(29.78 %)
48,137
(1.31 %)
7 Chinese alligator
GCF_000455745.1
49,897
(44.05 %)
14,428
(1.00 %)
72,676
(2.16 %)
n/a 44.49
(96.86 %)
167,965
(3.17 %)
177,282
(96.83 %)
2,998,039
(38.47 %)
346,310
(1.06 %)
12,332,417
(29.19 %)
46,636
(1.17 %)
8 Chinese soft-shelled turtle
GCF_000230535.1
45,454
(49.60 %)
13,725
(0.95 %)
88,745
(2.61 %)
n/a 44.42
(95.68 %)
185,476
(4.35 %)
205,380
(95.65 %)
1,284,603
(11.20 %)
455,163
(3.06 %)
11,234,886
(32.34 %)
95,997
(2.06 %)
9 coelacanth
GCF_000225785.1
40,776
(45.19 %)
13,818
(0.81 %)
37,802
(1.29 %)
n/a 41.15
(76.37 %)
269,010
(23.67 %)
291,829
(76.33 %)
4,622,378
(45.80 %)
571,917
(1.19 %)
14,630,157
(34.87 %)
42,857
(0.54 %)
10 common wall lizard
GCF_004329235.1
56,519
(54.27 %)
14,447
(1.36 %)
42,702
(2.32 %)
39,427
(3.20 %)
44.18
(99.81 %)
4,085
(0.19 %)
2,161
(100.00 %)
1,135,168
(8.42 %)
506,669
(2.12 %)
7,474,116
(36.15 %)
122,507
(3.69 %)
11 eastern brown snake
GCF_900518735.1
34,614
(43.57 %)
13,629
(1.22 %)
41,211
(1.92 %)
28,806
(2.37 %)
39.84
(97.54 %)
59,472
(2.47 %)
28,550
(100.00 %)
1,064,921
(5.89 %)
663,810
(2.41 %)
8,140,554
(39.61 %)
52,895
(2.12 %)
12 elephant shark
GCF_000165045.1
30,695
(52.05 %)
11,646
(1.60 %)
28,786
(2.60 %)
n/a 42.34
(96.16 %)
46,232
(3.85 %)
67,421
(96.15 %)
1,926,864
(38.18 %)
330,698
(2.60 %)
5,549,534
(36.65 %)
35,561
(2.16 %)
13 high Himalaya frog
GCF_000935625.1
26,122
(42.57 %)
13,690
(0.93 %)
62,075
(2.44 %)
n/a 42.55
(96.32 %)
122,325
(3.70 %)
147,513
(96.30 %)
539,604
(1.38 %)
794,563
(5.48 %)
11,465,450
(37.44 %)
219,772
(3.92 %)
14 gharial
GCF_001723915.1
32,297
(43.73 %)
12,195
(1.03 %)
55,598
(1.83 %)
n/a 43.95
(73.60 %)
248,526
(26.44 %)
81
(100.00 %)
2,665,007
(36.56 %)
243,334
(0.51 %)
11,279,606
(20.80 %)
26,651
(0.60 %)
15 Goodes thornscrub tortoise
GCF_007399415.2
57,455
(51.33 %)
14,859
(1.00 %)
79,415
(2.33 %)
n/a 44.14
(98.71 %)
562
(1.29 %)
383
(100.00 %)
1,699,240
(13.65 %)
387,796
(2.00 %)
11,572,827
(33.36 %)
71,687
(2.29 %)
16 green anole
GCF_000090745.1
38,109
(47.48 %)
13,022
(1.08 %)
36,350
(1.68 %)
n/a 40.32
(94.57 %)
35,533
(5.44 %)
41,987
(94.56 %)
3,046,789
(35.84 %)
702,538
(2.99 %)
8,199,653
(39.69 %)
42,151
(1.18 %)
17 Green sea turtle
GCF_000344595.1
31,786
(42.84 %)
14,569
(1.02 %)
77,496
(2.26 %)
n/a 43.49
(95.57 %)
134,344
(4.44 %)
274,367
(95.56 %)
1,713,239
(14.26 %)
317,642
(2.08 %)
11,732,990
(28.32 %)
36,782
(0.70 %)
18 Schlegel's Japanese gecko
GCF_001447785.1
25,190
(34.88 %)
14,559
(0.81 %)
93,071
(2.44 %)
n/a 45.48
(96.46 %)
143,970
(3.54 %)
335,470
(96.46 %)
1,628,593
(7.27 %)
666,501
(2.83 %)
12,865,811
(39.14 %)
160,022
(2.80 %)
19 mainland tiger snake
GCF_900518725.1
34,251
(40.69 %)
13,447
(1.15 %)
41,323
(1.81 %)
30,892
(1.93 %)
39.72
(95.17 %)
79,478
(4.84 %)
52,414
(100.00 %)
1,129,940
(6.04 %)
711,408
(2.47 %)
8,047,065
(40.24 %)
61,669
(2.47 %)
20 reedfish
GCF_900747795.1
40,558
(43.70 %)
13,160
(0.46 %)
48,082
(1.04 %)
34,872
(1.34 %)
39.44
(93.75 %)
5,614
(6.25 %)
1,885
(100.00 %)
1,852,335
(2.79 %)
1,018,031
(2.36 %)
20,081,632
(44.56 %)
88,254
(1.06 %)
21 garter snake
GCF_001077635.1
26,656
(34.23 %)
11,630
(1.25 %)
38,102
(2.42 %)
n/a 39.92
(78.84 %)
246,220
(21.21 %)
175,977
(78.79 %)
779,428
(5.61 %)
543,646
(2.36 %)
6,946,141
(27.08 %)
36,264
(1.27 %)
22 brown spotted pit viper
GCF_001527695.2
24,336
(32.76 %)
14,048
(1.20 %)
51,679
(2.38 %)
n/a 39.97
(92.15 %)
115,571
(7.86 %)
167,851
(92.14 %)
1,291,449
(8.96 %)
819,247
(3.70 %)
8,328,674
(35.16 %)
68,858
(2.06 %)
23 spotted gar
GCF_000242695.1
45,694
(59.51 %)
13,054
(1.95 %)
56,879
(5.06 %)
n/a 39.59
(91.93 %)
43,276
(8.08 %)
45,199
(91.92 %)
217,619
(1.18 %)
123,247
(0.80 %)
5,837,321
(22.82 %)
38,507
(2.24 %)
24 tropical clawed frog
GCF_000004195.4
50,570
(51.54 %)
14,675
(1.95 %)
34,624
(2.33 %)
n/a 40.73
(99.80 %)
684
(0.20 %)
167
(100.00 %)
2,420,417
(35.06 %)
708,472
(13.14 %)
6,816,377
(41.73 %)
52,647
(1.35 %)
25 two-lined caecilian
GCF_901001135.1
56,630
(53.09 %)
14,452
(0.38 %)
180,328
(2.13 %)
n/a 44.40
(99.36 %)
3,573
(0.64 %)
1,330
(100.00 %)
2,273,617
(1.93 %)
2,036,108
(4.34 %)
29,400,958
(44.09 %)
602,912
(6.66 %)
26 whale shark
GCF_001642345.1
31,857
(30.57 %)
11,890
(0.43 %)
41,823
(0.87 %)
n/a 41.78
(100.00 %)
900,650
(0.03 %)
57,334
(100.00 %)
420,252
(1.14 %)
426,542
(2.75 %)
16,418,143
(38.85 %)
35,192
(0.95 %)
TOTALS:total assembly count 26

Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates