Vertebrate Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 Abingdon island giant tortoise Chelonoidis abingdonii GCF_003597395.1_ASM359739v1 10,618 2,300,739,315 63,430 131,201,757 27.42
2 African clawed frog (2021) Xenopus laevis GCF_017654675.1_Xenopus_laevis_v10.1 55 2,742,469,346 667 1,674,718 43.70
3 American alligator Alligator mississippiensis GCF_000281125.3_ASM28112v4 7,094 2,161,730,208 236,641 47,274,298 35.76
4 Asiatic toad (SCDJY-AF-19 2020) Bufo gargarizans GCF_014858855.1_ASM1485885v1 748 4,545,482,719 3,874 81,454,369 58.76
5 Australian saltwater crocodile Crocodylus porosus GCF_001723895.1_CroPor_comp1 70 2,049,536,252 97,039 108,664,899 34.61
6 brown spotted pit viper Protobothrops mucrosquamatus GCF_001527695.2_P.Mucros_1.0 52,280 1,673,876,332 115,571 131,596,805 35.18
7 Burmese python Python bivittatus GCF_000186305.1_Python_molurus_bivittatus-5.0.2 39,113 1,435,052,152 235,132 50,501,725 25.32
8 central bearded dragon Pogona vitticeps GCF_900067755.1_pvi1.1 13,749 1,716,675,060 90,546 68,427,839 29.79
9 Chinese alligator Alligator sinensis GCF_000455745.1_ASM45574v1 9,317 2,270,567,745 167,965 71,965,296 37.27
10 Chinese soft-shelled turtle Pelodiscus sinensis GCF_000230535.1_PelSin_1.0 19,904 2,202,483,752 185,476 95,844,368 32.34
11 coelacanth Latimeria chalumnae GCF_000225785.1_LatCha1 22,819 2,860,591,921 269,010 676,999,153 34.97
12 common garter snake Thamnophis sirtalis GCF_001077635.1_Thamnophis_sirtalis-6.0 7,930 1,424,897,867 246,220 302,274,245 27.09
13 common wall lizard Podarcis muralis GCF_004329235.1_PodMur_1.0 2,161 1,511,020,169 4,085 2,917,502 36.17
14 common toad Bufo bufo GCF_905171765.1_aBufBuf1.1 1,306 5,044,744,194 4,199 9,878,258 62.71
15 corn snake Pantherophis guttatus GCF_001185365.1_UNIGE_PanGut_3.0 34,268 1,706,961,544 84,947 80,217,334 40.33
16 eastern brown snake Pseudonaja textilis GCF_900518735.1_EBS10Xv2-PRI 28,550 1,590,035,073 59,472 39,286,110 39.63
17 elephant shark (2021) Callorhinchus milii GCF_018977255.1_IMCB_Cmil_1.0 1,762 991,535,955 14,404 67,999 37.93
18 epaulette shark (sHemOce1 2021 VGP) Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. 1,963 3,983,483,121 3,716 77,564,682 43.90
19 epaulette shark (alt pseudohaplotype sHemOce1 2021 VGP) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon 4,000 4,149,461,884 3,552 83,364,248 44.34
20 European common frog Rana temporaria GCF_905171775.1_aRanTem1.1 554 4,111,422,596 1,860 26,194,034 55.46
21 European eel Anguilla anguilla GCF_013347855.1_fAngAng1.pri 54 979,045,926 640 3,868,499 27.45
22 fence lizard Sceloporus undulatus GCF_019175285.1_SceUnd_v1.1 45,012 1,905,484,175 48,138 47,138,997 34.39
23 Gaboon caecilian (alt pseudohaplotype 2019 VGP) Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
24 Gaboon caecilian (2019 refseq VGP) Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 164 3,779,430,019 433 5,502,713 52.86
25 gharial Gavialis gangeticus GCF_001723915.1_GavGan_comp1 81 2,640,792,433 248,526 698,155,287 26.91
26 Goodes thornscrub tortoise (Sinaloan 2019 VGP) Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p 383 2,298,564,209 562 29,560,319 33.37
27 Goodes thornscrub tortoise (Sinaloan alt pseudohaplotype 2019 VGP) Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
28 gray bichir Polypterus senegalus GCF_016835505.1_ASM1683550v1 9,856 3,673,880,163 3,166 1,583,000 47.67
29 great white shark Carcharodon carcharias GCF_017639515.1_sCarCar2.pri 719 4,286,311,191 2,645 19,150,268 52.46
30 green anole Anolis carolinensis GCF_000090745.1_AnoCar2.0 6,457 1,799,143,587 35,533 97,789,820 39.70
31 green sea turtle (v2 2021) Chelonia mydas GCF_015237465.2_rCheMyd1.pri.v2 93 2,134,375,114 298 11,960,176 31.96
32 High Himalaya frog Nanorana parkeri GCF_000935625.1_ASM93562v1 25,188 2,053,867,363 122,325 76,078,142 37.46
33 Komodo dragon (SLA01 2019) Varanus komodoensis GCF_004798865.1_ASM479886v1 1,411 1,507,945,839 19,737 14,639,079 24.66
34 Lataste's viper (rVipLat1 2022 VGP) Vipera latastei GCA_024294585.1_rVipLat1.pri 56 1,631,568,913 769 3,547,667 44.82
35 leatherback sea turtle (v4 2021 refseq G10K VGP) Dermochelys coriacea GCF_009764565.3_rDerCor1.pri.v4 40 2,164,762,090 668 5,594,612 34.21
36 leatherback sea turtle (alt pseudohaplotype 2019 VGP) Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
37 loggerhead turtle (SJ_126:Eziel1 2022) Caretta caretta GCF_023653815.1_GSC_CCare_1.0 2,008 2,134,012,717 745 2,128,794 33.92
38 mainland tiger snake Notechis scutatus GCF_900518725.1_TS10Xv2-PRI 52,414 1,665,525,958 79,478 80,606,990 40.26
39 marbled whiptail (SIMRID8450 2020) Aspidoscelis marmoratus GCA_014337955.1_AspMar1.0 3,826 1,639,530,780 166,840 92,948,330 33.03
40 meadow viper (2022 VGP) Vipera ursinii GCA_947247035.1_rVipUrs1.1 384 1,625,023,540 1,819 363,800 45.37
41 Mexican gopher tortoise (WGS:JAMKFC01 2022 VGP) Gopherus flavomarginatus GCF_025201925.1_rGopFla2.mat.asm 621 2,460,542,086 1,866 89,638,462 34.69
42 Mexican gopher tortoise (WGS:JAMKFD01 2022 VGP) Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm 2,992 2,584,697,711 1,790 116,054,540 34.08
43 Mississippi paddlefish Polyodon spathula GCF_017654505.1_ASM1765450v1 4,235 1,542,083,420 2,963 1,696,468 36.87
44 red-eared slider turtle Trachemys scripta elegans GCF_013100865.1_CAS_Tse_1.0 138 2,126,199,303 25,390 82,148,119 30.75
45 reedfish Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 1,885 3,811,038,701 5,614 238,294,611 44.57
46 Reeves's turtle Mauremys reevesii GCF_016161935.1_ASM1616193v1 230 2,367,607,229 398 39,800 34.64
47 sand lizard (alt pseudohaplotype 2019 VGP) Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
48 sand lizard (2019 VGP) Lacerta agilis GCF_009819535.1_rLacAgi1.pri 29 1,391,404,169 379 3,491,078 34.50
49 Schlegel's Japanese gecko Gekko japonicus GCF_001447785.1_Gekko_japonicus_V1.1 191,500 2,490,274,461 143,970 88,227,448 39.16
50 sea lamprey (alt pseudohaplotype 2020 VGP) Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
51 sea lamprey (2020 VGP) Petromyzon marinus GCF_010993605.1_kPetMar1.pri 1,434 1,089,050,413 930 15,013,687 50.62
52 smaller spotted catshark Scyliorhinus canicula GCF_902713615.1_sScyCan1.1 646 4,220,406,627 7,146 64,220,747 51.42
53 smalltooth sawfish (2019 VGP) Pristis pectinata GCA_009764475.1_sPriPec2.pri 173 2,267,857,790 698 20,562,876 38.20
54 smalltooth sawfish (alt pseudohaplotype 2019 VGP) Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
55 spotted gar Lepisosteus oculatus GCF_000242695.1_LepOcu1 1,925 945,874,548 43,276 76,460,189 22.84
56 sterlet Acipenser ruthenus GCF_010645085.1_ASM1064508v1 3,404 1,830,501,248 6,283 1,254,212 39.32
57 thorny skate (CabotCenter1 v1.1 2020 VGP) Amblyraja radiata GCF_010909765.2_sAmbRad1.1.pri 957 2,558,784,953 3,753 190,972,533 52.28
58 thorny skate (alt pseudohaplotype CabotCenter1 2020 VGP) Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
59 three-toed box turtle Terrapene carolina triunguis GCF_002925995.2_T_m_triunguis-2.0 48,497 2,562,212,628 53,635 131,526,270 31.74
60 tiger rattlesnake Crotalus tigris GCF_016545835.1_ASM1654583v1 4,228 1,612,002,213 0 0 42.93
61 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
62 tiny Cayenne caecilian (alt pseudohaplotype 2019 VGP) Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
63 Townsend's dwarf sphaero (gecko TG3544 2022) Sphaerodactylus townsendi GCF_021028975.2_MPM_Stown_v2.3 1,742 1,810,846,735 2,590 229,288 38.60
64 tropical clawed frog Xenopus tropicalis GCF_000004195.4_UCB_Xtro_10.0 167 1,451,301,209 684 2,839,231 41.76
65 two-lined caecilian (2019 VGP) Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 44.11
66 two-lined caecilian (alt pseudohaplotype 2019 VGP) Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
67 viviparous/common lizard Zootoca vivipara GCF_011800845.1_UG_Zviv_1 25,252 1,464,300,591 51,275 43,421,287 34.22
68 West African lungfish Protopterus annectens GCF_019279795.1_PAN1.0 12,668 40,054,341,269 0 993,106,966 52.76
69 western painted turtle (v304 2020) Chrysemys picta bellii GCF_000241765.4_Chrysemys_picta_BioNano-3.0.4 76,388 2,481,368,539 184,311 309,640,510 36.60
70 western terrestrial garter snake (alt pseudohaplotype 2019 VGP) Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
71 western terrestrial garter snake (2019 VGP) Thamnophis elegans GCF_009769535.1_rThaEle1.pri 365 1,672,190,305 1,518 38,185,703 42.64
72 whale shark (Ralph 2017 Emory U) Rhincodon typus GCF_001642345.1_ASM164234v2 57,334 2,931,599,576 900,650 917,010 38.86
73 whale shark (14 2022 Squalomix) Rhincodon typus GCF_021869965.1_sRhiTyp1.1 16,684 2,880,448,384 95,208 241,885,584 34.15
74 whitespotted bambooshark Chiloscyllium plagiosum GCF_004010195.1_ASM401019v2 101,977 3,556,477,427 156,554 204,109,657 38.22
75 yellowpond turtle (Southern MM-2020 2021) Mauremys mutica GCF_020497125.1_ASM2049712v1 595 2,484,367,879 1,041 93,474,084 33.86
76 zebra shark (6-17 2022 Squalomix) Stegostoma fasciatum GCF_022316705.1_sSteFas1.1 1,266 2,771,866,316 87,372 171,787,940 32.94
TOTALS:total assembly count 76 1,107,850 220,048,776,736 4,405,486 6,579,932,597  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 59 assemblies assembly stats track stats
Mammals 357 assemblies assembly stats track stats
Birds 175 assemblies assembly stats track stats
Fishes 195 assemblies assembly stats track stats
other vertebrates 76 assemblies assembly stats track stats
Invertebrates 470 assemblies assembly stats track stats
Plants 173 assemblies assembly stats track stats
Fungi 463 assemblies assembly stats track stats
Viruses 254 assemblies assembly stats track stats
Bacteria 14 assemblies assembly stats track stats
VGP - Vertebrate Genome Project 261 assemblies assembly stats track stats
legacy/superseded 242 assemblies assembly stats track stats