Vertebrate Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub accesstrack statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser
scientific name
and data download
NCBI assembly sequence
count
genome size
nucleotides
gap
count
unknown bases
(gap size sum)
masking
percent
1 African clawed frog Xenopus laevis GCF_001663975.1_Xenopus_laevis_v2 108,033 2,718,433,805 216,028 309,709,018 35.96
2 American alligator Alligator mississippiensis GCF_000281125.3_ASM28112v4 7,094 2,161,730,208 236,641 47,274,298 35.76
3 Australian saltwater crocodile Crocodylus porosus GCF_001723895.1_CroPor_comp1 70 2,049,536,252 97,039 108,664,899 34.61
4 Burmese python Python bivittatus GCF_000186305.1_Python_molurus_bivittatus-5.0.2 39,113 1,435,052,152 235,132 50,501,725 25.32
5 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
6 central bearded dragon Pogona vitticeps GCF_900067755.1_pvi1.1 13,749 1,716,675,060 90,546 68,427,839 29.79
7 Chinese alligator Alligator sinensis GCF_000455745.1_ASM45574v1 9,317 2,270,567,745 167,965 71,965,296 37.27
8 Chinese soft-shelled turtle Pelodiscus sinensis GCF_000230535.1_PelSin_1.0 19,904 2,202,483,752 185,476 95,844,368 32.34
9 coelacanth Latimeria chalumnae GCF_000225785.1_LatCha1 22,819 2,860,591,921 269,010 676,999,153 34.97
10 common wall lizard Podarcis muralis GCF_004329235.1_PodMur_1.0 2,161 1,511,020,169 4,085 2,917,502 36.17
11 eastern brown snake Pseudonaja textilis GCF_900518735.1_EBS10Xv2-PRI 28,550 1,590,035,073 59,472 39,286,110 39.63
12 elephant shark Callorhinchus milii GCF_000165045.1_Callorhinchus_milii-6.1.3 21,204 974,498,586 46,232 37,545,143 36.81
13 high Himalaya frog Nanorana parkeri GCF_000935625.1_ASM93562v1 25,188 2,053,867,363 122,325 76,078,142 37.46
14 gharial Gavialis gangeticus GCF_001723915.1_GavGan_comp1 81 2,640,792,433 248,526 698,155,287 26.91
15 Goodes thornscrub tortoise Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p 383 2,298,564,209 562 29,560,319 33.37
16 green anole Anolis carolinensis GCF_000090745.1_AnoCar2.0 6,457 1,799,143,587 35,533 97,789,820 39.70
17 Green sea turtle Chelonia mydas GCF_000344595.1_CheMyd_1.0 140,023 2,208,410,377 134,344 98,028,380 28.33
18 Schlegel's Japanese gecko Gekko japonicus GCF_001447785.1_Gekko_japonicus_V1.1 191,500 2,490,274,461 143,970 88,227,448 39.16
19 mainland tiger snake Notechis scutatus GCF_900518725.1_TS10Xv2-PRI 52,414 1,665,525,958 79,478 80,606,990 40.26
20 reedfish Erpetoichthys calabaricus GCF_900747795.1_fErpCal1.1 1,885 3,811,038,701 5,614 238,294,611 44.57
21 garter snake Thamnophis sirtalis GCF_001077635.1_Thamnophis_sirtalis-6.0 7,930 1,424,897,867 246,220 302,274,245 27.09
22 brown spotted pit viper Protobothrops mucrosquamatus GCF_001527695.2_P.Mucros_1.0 52,280 1,673,876,332 115,571 131,596,805 35.18
23 spotted gar Lepisosteus oculatus GCF_000242695.1_LepOcu1 1,925 945,874,548 43,276 76,460,189 22.84
24 tropical clawed frog Xenopus tropicalis GCF_000004195.4_UCB_Xtro_10.0 167 1,451,301,209 684 2,839,231 41.76
25 two-lined caecilian Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 44.11
26 whale shark Rhincodon typus GCF_001642345.1_ASM164234v2 57,334 2,931,599,576 900,650 917,010 38.86
TOTALS:total assembly count 26 811,992 58,890,969,965 3,690,404 3,511,356,946  

Additional hubs with collections of assemblies
Assembly hubs index pages:  Primates Mammals Birds Fish other vertebrates
Hubs assembly statistics:  Primates Mammals Birds Fish other vertebrates
Hubs track statistics:  Primates Mammals Birds Fish other vertebrates