Vertebrate Genomes assembly hubs, assembly statistics

Assemblies from NCBI/Genbank/Refseq sources, subset of other vertebrates only.

See also: hub access, track statistics


Data resource links

NOTE: Click on the column headers to sort the table by that column
The link to genome browser will attach only that single assembly to the genome browser.
count common name
link to genome browser		 scientific name
and data download		 NCBI assembly sequence
count		genome size
nucleotides		 gap
count		unknown bases
(gap size sum)		masking
percent
1 Abingdon island giant tortoise Chelonoidis abingdonii GCF_003597395.1_ASM359739v1 10,618 2,300,739,315 63,430 131,201,757 27.42
2 Aeolian wall lizard (rPodRaf1 primary hap 2022) Podarcis raffonei GCF_027172205.1_rPodRaf1.pri 27 1,513,131,503 30 23,116 38.30
3 African clawed frog (2021) Xenopus laevis GCF_017654675.1_Xenopus_laevis_v10.1 55 2,742,469,346 667 1,674,718 43.70
4 American alligator Alligator mississippiensis GCF_000281125.3_ASM28112v4 7,094 2,161,730,208 236,641 47,274,298 36.07
5 Asiatic toad (SCDJY-AF-19 2020) Bufo gargarizans GCF_014858855.1_ASM1485885v1 748 4,545,482,719 3,874 81,454,369 58.76
6 Australian saltwater crocodile Crocodylus porosus GCF_001723895.1_CroPor_comp1 70 2,049,536,252 97,039 108,664,899 34.94
7 Blainville's horned lizard (primary hap 2022) Phrynosoma blainvillii GCA_026167985.1_rPhrBla1.0.hap1 78 2,210,317,752 73 7,300 40.92
8 Blainville's horned lizard (alternate hap 2022) Phrynosoma blainvillii GCA_026167975.1_rPhrBla1.0.hap2 52 1,968,358,621 64 6,400 40.57
9 brown spotted pit viper Protobothrops mucrosquamatus GCF_001527695.2_P.Mucros_1.0 52,280 1,673,876,332 115,571 131,596,805 35.18
10 Burmese python Python bivittatus GCF_000186305.1_Python_molurus_bivittatus-5.0.2 39,113 1,435,052,152 235,132 50,501,725 25.32
11 California glossy snake (A.elegans occidentalis HBS 135684 alternate hap 2022) Arizona elegans GCA_022578425.1_rAriEle1.0.a 54,869 2,206,698,359 5,955 595,511 46.05
12 California glossy snake (A.elegans occidentalis HBS 135684 primary hap 2022) Arizona elegans GCA_022577455.1_rAriEle1.0.p 140 1,842,551,953 256 25,618 46.73
13 central bearded dragon Pogona vitticeps GCF_900067755.1_pvi1.1 13,749 1,716,675,060 90,546 68,427,839 29.79
14 Chinese alligator Alligator sinensis GCF_000455745.1_ASM45574v1 9,317 2,270,567,745 167,965 71,965,296 37.54
15 Chinese soft-shelled turtle Pelodiscus sinensis GCF_000230535.1_PelSin_1.0 19,904 2,202,483,752 185,476 95,844,368 32.34
16 coelacanth Latimeria chalumnae GCF_000225785.1_LatCha1 22,819 2,860,591,921 269,010 676,999,153 34.87
17 common garter snake Thamnophis sirtalis GCF_001077635.1_Thamnophis_sirtalis-6.0 7,930 1,424,897,867 246,220 302,274,245 27.09
18 common wall lizard Podarcis muralis GCF_004329235.1_PodMur_1.0 2,161 1,511,020,169 4,085 2,917,502 36.17
19 common toad Bufo bufo GCF_905171765.1_aBufBuf1.1 1,306 5,044,744,194 4,199 9,878,258 62.71
20 corn snake Pantherophis guttatus GCF_001185365.1_UNIGE_PanGut_3.0 34,268 1,706,961,544 84,947 80,217,334 40.33
21 diamondback terrapin (rMalTer1 2023) Malaclemys terrapin pileata GCF_027887155.1_rMalTer1.hap1 76 2,211,221,380 141 1,749,567 46.30
22 eastern brown snake Pseudonaja textilis GCF_900518735.1_EBS10Xv2-PRI 28,550 1,590,035,073 59,472 39,286,110 39.63
23 elephant shark (2021) Callorhinchus milii GCF_018977255.1_IMCB_Cmil_1.0 1,762 991,535,955 14,404 67,999 37.93
24 epaulette shark (sHemOce1 2021) Hemiscyllium ocellatum GCA_020745735.1_sHemOce1.pat.X.cur. 1,963 3,983,483,121 3,716 77,564,682 43.90
25 epaulette shark (alternate hap sHemOce1 2021) Hemiscyllium ocellatum GCA_020745765.1_sHemOce1.mat.decon 4,000 4,149,461,884 3,552 83,364,248 44.34
26 European common frog Rana temporaria GCF_905171775.1_aRanTem1.1 554 4,111,422,596 1,860 26,194,034 55.46
27 European eel (primary hap 2020) Anguilla anguilla GCF_013347855.1_fAngAng1.pri 54 979,045,926 640 3,868,499 27.45
28 fence lizard Sceloporus undulatus GCF_019175285.1_SceUnd_v1.1 45,012 1,905,484,175 48,138 47,138,997 34.39
29 fire-bellied toad (aBomBom1 primary hap 2023) Bombina bombina GCF_027579735.1_aBomBom1.pri 2,467 10,019,663,791 7,009 198,898,177 69.42
30 Gaboon caecilian (alternate hap 2019) Geotrypetes seraphini GCA_902459495.1_aGeoSer1.1_alternate_haplotype 9,650 3,271,590,920 1 30 52.45
31 Gaboon caecilian (2019 refseq) Geotrypetes seraphini GCF_902459505.1_aGeoSer1.1 164 3,779,430,019 433 5,502,713 52.86
32 gharial Gavialis gangeticus GCF_001723915.1_GavGan_comp1 81 2,640,792,433 248,526 698,155,287 27.15
33 Goodes thornscrub tortoise (Sinaloan 2019) Gopherus evgoodei GCF_007399415.2_rGopEvg1_v1.p 383 2,298,564,209 562 29,560,319 33.37
34 Goodes thornscrub tortoise (Sinaloan alternate hap 2019) Gopherus evgoodei GCA_007399395.1_rGopEvg1_v1.alt 8,736 1,961,129,424 0 0 33.34
35 gopher snake (HBS135680 alternate hap 2023) Pituophis catenifer annectens GCA_029215685.1_rPitCat1.0.hap2 649 1,682,881,129 584 58,400 45.94
36 gopher snake (HBS135680 primary hap 2023) Pituophis catenifer annectens GCA_029215655.1_rPitCat1.0.hap1 426 1,749,255,673 603 60,300 45.41
37 graceful crag lizard (Gifberg primary hap 2022) Hemicordylus capensis GCF_027244095.1_rHemCap1.1.pri 44 2,294,751,221 42 8,400 41.45
38 gray bichir Polypterus senegalus GCF_016835505.1_ASM1683550v1 9,856 3,673,880,163 3,166 1,583,000 47.67
39 great white shark (primary hap 2021) Carcharodon carcharias GCF_017639515.1_sCarCar2.pri 719 4,286,311,191 2,645 19,150,268 52.46
40 green anole Anolis carolinensis GCF_000090745.1_AnoCar2.0 6,457 1,799,143,587 35,533 97,789,820 39.70
41 green sea turtle (v2 primary hap 2021) Chelonia mydas GCF_015237465.2_rCheMyd1.pri.v2 93 2,134,375,114 298 11,960,176 31.96
42 High Himalaya frog Nanorana parkeri GCF_000935625.1_ASM93562v1 25,188 2,053,867,363 122,325 76,078,142 37.46
43 Komodo dragon (SLA01 2019) Varanus komodoensis GCF_004798865.1_ASM479886v1 1,411 1,507,945,839 19,737 14,639,079 24.66
44 Lataste's viper (rVipLat1 primary hap 2022) Vipera latastei GCA_024294585.1_rVipLat1.pri 56 1,631,568,913 769 3,547,667 44.82
45 leatherback sea turtle (v4 primary hap 2021 refseq G10K) Dermochelys coriacea GCF_009764565.3_rDerCor1.pri.v4 40 2,164,762,090 668 5,594,612 34.21
46 leatherback sea turtle (alternate hap 2019) Dermochelys coriacea GCA_009762595.1_rDerCor1.alt 8,982 1,443,623,898 0 0 33.04
47 leopard gecko (TG4126 2023) Eublepharis macularius GCF_028583425.1_MPM_Emac_v1.0 76 2,237,397,408 62 6,101 37.92
48 little skate (New England 2023) Leucoraja erinacea GCF_028641065.1_Leri_hhj_1 1,769 2,190,861,671 862 81,010 66.54
49 loggerhead turtle (SJ_126:Eziel1 2022) Caretta caretta GCF_023653815.1_GSC_CCare_1.0 2,008 2,134,012,717 745 2,128,794 33.92
50 mainland tiger snake Notechis scutatus GCF_900518725.1_TS10Xv2-PRI 52,414 1,665,525,958 79,478 80,606,990 40.26
51 marbled whiptail (SIMRID8450 2020) Aspidoscelis marmoratus GCA_014337955.1_AspMar1.0 3,826 1,639,530,780 166,840 92,948,330 33.03
52 meadow viper (primary hap 2022) Vipera ursinii GCA_947247035.1_rVipUrs1.1 384 1,625,023,540 1,819 363,800 45.37
53 meadow viper (alternate hap 2022) Vipera ursinii GCA_947247025.1_rVipUrs1.1_alternate_haplotype 9,575 1,180,062,022 12 2,400 41.76
54 Mexican gopher tortoise (WGS:JAMKFC01 2022) Gopherus flavomarginatus GCF_025201925.1_rGopFla2.mat.asm 621 2,460,542,086 1,866 89,638,462 34.69
55 Mexican gopher tortoise (WGS:JAMKFD01 2022) Gopherus flavomarginatus GCA_025201965.1_rGopFla2.pat.asm 2,992 2,584,697,711 1,790 116,054,540 34.08
56 Mississippi paddlefish Polyodon spathula GCF_017654505.1_ASM1765450v1 4,235 1,542,083,420 2,963 1,696,468 36.87
57 Northern rubber boa (HBS 135849 alternate hap 2022) Charina bottae GCA_023362785.1_rChaBot1.0.a 224 1,703,974,979 84 8,400 42.47
58 Northern rubber boa (HBS 135849 primary hap 2022) Charina bottae GCA_023362775.1_rChaBot1.0.p 289 1,804,939,834 85 8,500 42.87
59 Northwestern pond turtle (WTP2003 alternate hap 2022) Actinemys marmorata GCA_022086895.1_rActMar1.a 2,508 2,209,870,670 1,800 180,000 48.91
60 Northwestern pond turtle (WTP2003 primary hap 2022) Actinemys marmorata GCA_022086475.1_rActMar1.p 48 2,301,118,547 148 14,823 48.89
61 plains spadefoot toad (aSpeBom1 primary hap 2022) Spea bombifrons GCF_027358695.1_aSpeBom1.2.pri 17 987,655,159 102 3,822,643 36.29
62 red-eared slider turtle Trachemys scripta elegans GCF_013100865.1_CAS_Tse_1.0 138 2,126,199,303 25,390 82,148,119 30.75
63 Reeves's turtle Mauremys reevesii GCF_016161935.1_ASM1616193v1 230 2,367,607,229 398 39,800 34.64
64 Ringneck snake (HBS135679 primary hap 2022) Diadophis punctatus similis GCA_023053685.1_rDiaPun1.0.p 444 1,783,023,707 723 72,300 48.68
65 San Diegan legless lizard (HBS135921 alternate hap 2023) Anniella stebbinsi GCA_029215795.1_rAnnSte1.0.hap2 91 1,891,076,299 31 3,100 39.31
66 San Diegan legless lizard (HBS135921 primary hap 2023) Anniella stebbinsi GCA_029215775.1_rAnnSte1.0.hap1 134 1,890,507,581 21 2,100 39.04
67 San Diegan tiger whiptail (HBS 135688 2022) Aspidoscelis tigris stejnegeri GCA_023333525.1_rAspTig1.0.p 74 1,335,668,279 39 3,900 36.99
68 San Diegan tiger whiptail (alternate hap HBS 135688 2022) Aspidoscelis tigris stejnegeri GCA_023333555.1_rAspTig1.0.a 227 1,675,887,475 44 4,400 39.22
69 San Diego alligator lizard (HBS135686 alternate hap 2022) Elgaria multicarinata webbii GCA_023053675.1_rElgMul1.0.a 627 1,810,359,265 27 2,700 40.46
70 San Diego alligator lizard (HBS135686 primary hap 2022) Elgaria multicarinata webbii GCA_023053635.1_rElgMul1.0.p 85 1,790,509,355 23 2,300 40.44
71 San Diego ringneck snake (HBS135679 alternate hap 2022) Diadophis punctatus similis GCA_023053665.1_rDiaPun1.0.a 2,064 1,577,714,162 572 57,200 50.64
72 sand lizard (alternate hap 2019) Lacerta agilis GCA_009819545.1_rLacAgi1.alt 12,660 1,429,379,209 2 120 34.27
73 sand lizard (primary hap 2019) Lacerta agilis GCF_009819535.1_rLacAgi1.pri 29 1,391,404,169 379 3,491,078 34.50
74 Schlegel's Japanese gecko Gekko japonicus GCF_001447785.1_Gekko_japonicus_V1.1 191,500 2,490,274,461 143,970 88,227,448 39.16
75 sea lamprey (alternate hap 2020) Petromyzon marinus GCA_010993595.1_kPetMar1.alt 4,064 841,632,067 11 24,549 49.81
76 sea lamprey (primary hap 2020) Petromyzon marinus GCF_010993605.1_kPetMar1.pri 1,434 1,089,050,413 930 15,013,687 50.62
77 smaller spotted catshark Scyliorhinus canicula GCF_902713615.1_sScyCan1.1 646 4,220,406,627 7,146 64,220,747 51.42
78 smalltooth sawfish (primary hap 2019 refseq) Pristis pectinata GCF_009764475.1_sPriPec2.1.pri 172 2,267,840,987 698 20,562,876 54.48
79 smalltooth sawfish (alternate hap 2019) Pristis pectinata GCA_009764485.1_sPriPec2.alt 10,892 1,694,166,684 0 0 38.34
80 Southern Pacific rattlesnake (HBS135844 alternate hap 2022) Crotalus oreganus helleri GCA_024509165.1_rCroOre1.a 340 1,628,461,744 34 782 44.44
81 Southern Pacific rattlesnake (HBS135844 primary hap 2022) Crotalus oreganus helleri GCA_024509115.1_rCroOre1.0.p 696 1,564,714,769 443 221,500 44.94
82 Southwestern pond turtle (HBS135687 alternate hap 2022) Actinemys pallida GCA_023634275.1_rActPal1.0.a 260 2,348,990,949 64 6,400 36.29
83 Southwestern pond turtle (HBS135687 primary hap 2022) Actinemys pallida GCA_023634205.1_rActPal1.0.p 53 2,326,928,347 53 5,300 36.13
84 spotted gar Lepisosteus oculatus GCF_000242695.1_LepOcu1 1,925 945,874,548 43,276 76,460,189 22.84
85 sterlet (fAciRut3.2 2022) Acipenser ruthenus GCA_902713435.2_fAciRut3.2_paternal_haplotype 1,517 1,882,648,115 475 95,000 41.60
86 sterlet (v2 Gen_M01 2020) Acipenser ruthenus GCF_010645085.2_ASM1064508v2 3,368 1,825,187,678 6,251 1,247,812 43.29
87 thorny skate (primary hap CabotCenter1 v1.1 2020) Amblyraja radiata GCF_010909765.2_sAmbRad1.1.pri 957 2,558,784,953 3,753 190,972,533 52.28
88 thorny skate (alternate hap CabotCenter1 2020) Amblyraja radiata GCA_010909745.1_sAmbRad1.alt 21,992 1,462,441,988 3 94 57.78
89 three-toed box turtle Terrapene carolina triunguis GCF_002925995.2_T_m_triunguis-2.0 48,497 2,562,212,628 53,635 131,526,270 31.74
90 tiger rattlesnake Crotalus tigris GCF_016545835.1_ASM1654583v1 4,228 1,612,002,213 0 0 42.93
91 tiny Cayenne caecilian Microcaecilia unicolor GCF_901765095.1_aMicUni1.1 1,081 4,685,939,420 2,452 47,437,278 52.44
92 tiny Cayenne caecilian (alternate hap 2019) Microcaecilia unicolor GCA_901765105.1_aMicUni1.1_alternate_haplotype 23,870 3,698,322,623 1 31 52.19
93 Townsend's dwarf sphaero (gecko TG3544 2022) Sphaerodactylus townsendi GCF_021028975.2_MPM_Stown_v2.3 1,742 1,810,846,735 2,590 229,288 38.60
94 tropical clawed frog Xenopus tropicalis GCF_000004195.4_UCB_Xtro_10.0 167 1,451,301,209 684 2,839,231 41.76
95 two-lined caecilian (2019) Rhinatrema bivittatum GCF_901001135.1_aRhiBiv1.1 1,330 5,319,239,201 3,573 33,955,840 44.11
96 two-lined caecilian (alternate hap 2019) Rhinatrema bivittatum GCA_901001175.1_aRhiBiv1.1_alternate_haplotype 27,231 4,615,304,139 2 63 43.78
97 valley gartersnake (HBS 135685 alternate hap 2023) Thamnophis sirtalis fitchi GCA_029207655.1_rThaSir1.0.hap2 226 1,683,046,358 403 40,300 45.12
98 valley gartersnake (HBS 135685 primary hap 2023) Thamnophis sirtalis fitchi GCA_029207665.1_rThaSir1.0.hap1 413 1,621,019,271 446 44,600 46.30
99 viviparous/common lizard Zootoca vivipara GCF_011800845.1_UG_Zviv_1 25,252 1,464,300,591 51,275 43,421,287 34.22
100 West African lungfish Protopterus annectens GCF_019279795.1_PAN1.0 12,668 40,054,341,269 0 993,106,966 52.76
101 western fence lizard (IW3139 2022) Sceloporus occidentalis GCA_023333635.1_rSceOcc1.0.a 1,771 3,186,658,811 51 5,100 40.63
102 western fence lizard (IW3139 primary hap 2022) Sceloporus occidentalis GCA_023333645.1_rSceOcc1.0.p 608 2,856,356,971 51 5,100 37.86
103 western painted turtle (v5 RCT428 2020) Chrysemys picta bellii GCF_000241765.5_Chrysemys_picta_BioNano-3.0.4 74,775 2,480,260,873 184,311 309,640,510 39.11
104 western red-tailed skink (HBS 135693 alternate hap 2022) Plestiodon gilberti rubricaudatus GCA_026170595.1_rPleGil1.0.hap2 39 1,571,222,493 15 1,500 36.98
105 western red-tailed skink (HBS 135693 primary hap 2022) Plestiodon gilberti rubricaudatus GCA_026170395.1_rPleGil1.0.hap1 50 1,447,229,999 12 1,200 37.05
106 western spadefoot toad (HBS 135690 2023) Spea hammondii GCA_029215705.1_aSpeHam1.0.hap1 479 1,142,014,214 198 19,800 41.85
107 western spadefoot toad (HBS 135690 2023) Spea hammondii GCA_029215755.1_aSpeHam1.0.hap2 351 1,155,539,324 190 19,000 42.27
108 western terrestrial garter snake (alternate hap 2019) Thamnophis elegans GCA_009769695.1_rThaEle1.alt 13,623 1,814,330,211 19 1,330,160 43.98
109 western terrestrial garter snake (primary hap 2019) Thamnophis elegans GCF_009769535.1_rThaEle1.pri 365 1,672,190,305 1,518 38,185,703 42.64
110 whale shark (Ralph 2017 Emory U) Rhincodon typus GCF_001642345.1_ASM164234v2 57,334 2,931,599,576 900,650 917,010 38.86
111 whale shark (14 2022 Squalomix) Rhincodon typus GCF_021869965.1_sRhiTyp1.1 16,684 2,880,448,384 95,208 241,885,584 34.15
112 whitespotted bambooshark Chiloscyllium plagiosum GCF_004010195.1_ASM401019v2 101,977 3,556,477,427 156,554 204,109,657 38.22
113 yellowpond turtle (Southern MM-2020 2021) Mauremys mutica GCF_020497125.1_ASM2049712v1 595 2,484,367,879 1,041 93,474,084 33.86
114 zebra shark (6-17 2022 Squalomix) Stegostoma fasciatum GCF_022316705.1_sSteFas1.1 1,266 2,771,866,316 87,372 171,787,940 32.94
TOTALS:total assembly count 114 1,188,198 296,715,589,156 4,421,667 6,547,801,834  

Additional hubs with collections of assemblies
Collection Hub index pages: Assembly statistics: Track statistics:
Primates 159 assemblies assembly stats track stats
Mammals 407 assemblies assembly stats track stats
Birds 270 assemblies assembly stats track stats
Fishes 270 assemblies assembly stats track stats
other vertebrates 114 assemblies assembly stats track stats
Invertebrates 583 assemblies assembly stats track stats
Plants 230 assemblies assembly stats track stats
Fungi 544 assemblies assembly stats track stats
Viruses 259 assemblies assembly stats track stats
Bacteria 64 assemblies assembly stats track stats
legacy/superseded 336 assemblies assembly stats track stats
collections below are subsets of the assemblies above
VGP - Vertebrate Genome Project 445 assemblies assembly stats track stats
CCGP - The California Conservation Genomics Project 126 assemblies assembly stats track stats
HPRC - Human Pangenome Reference Consortium 96 assemblies assembly stats track stats