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  Chromosome 21 - RH Maps - Single Contig
 

Chromosome 21 - RH Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_029490 NT_011512 NT_030187 NT_030188 NT_011515


  NT_011515
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011515AP001046413410133RH5755221230.64    1 AC018734, AL163296, AP001046, AP001751
S/G/Y/R/B/O NT_011515AP001046413410133WI-18985    21223.001 AC018734, AL163296, AP001046, AP001751
S/G/Y/R/B/O NT_011515AP001046413410133RH6930721229.05    1 AC018734, AL163296, AP001046, AP001751
S/G/Y/R/B/O NT_011515AP001046413413523RH10183621227.32    1 AC018734, AL163296, AP001046, AP001751
S/G/Y/R/B/O NT_011515AP001047413519393          
S/G/Y/R/B/O NT_011515AP001048413938343RH9839821227.04    1 AC018734, AC019224, AL163296, AP001048, AP001751
S/G/Y/R/B/O NT_011515AP001049414032723          
S/G/Y/R/B/O NT_011515AP001050414557993RH9200721239.63    1 AC012140, AC019224, AL163296, AP001050, AP001751
S/G/Y/R/B/O NT_011515AP001051415221963AFM067XD7    21220.701 AC019224, AL163296, AP001051, AP001751
S/G/Y/R/B/O NT_011515AP001052416820903RH3627921238.37    1 AC003656, AL163297, AP001052, AP001752
S/G/Y/R/B/O NT_011515AP001052416846213RH6629221241.42    1AP001053, AC003656, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001052416846573RH3599921230.82    1AP001053, AC003656, AP001052, AP001053
S/G/Y/R/B/O NT_011515AP001052416873073RH4844921238.73    1AP001053, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001052416878763RH5753421231.14    1AP001053, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001052416878763WI-18695    21220.601AP001053, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001052416880473RH1259121236.63    1AP001053, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001052416986033RH10385821231.67    1AP001053, AP001052, AP001053
S/G/Y/R/B/O NT_011515AP001052416992053RH4644521231.16    1AP001053, AL163297, AP001052, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001053417296693RH4880521231.67    1 AC003656, AL163297, AP001053, AP001752
S/G/Y/R/B/O NT_011515AP001053418299723RH1545621234.51    1AP001054, AC003656, AL163297, AP001053, AP001054, AP001752
S/G/Y/R/B/O NT_011515AP001053418299723RH620  211606.00  1AP001054, AC003656, AL163297, AP001053, AP001054, AP001752
S/G/Y/R/B/O NT_011515AP001054419090613RH4811521248.52    1 AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AP001054419104433RH1726521245.27    1 AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AP001054419123273RH7918821243.44    1 AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AP001054419123503RH2596121243.44    1 AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AP001054419128543RH1048221241.42    1AB001523, AB001523, AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AP001054419128993RH9350821241.90    1 AC003656, AL163298, AP001054, AP001753
S/G/Y/R/B/O NT_011515AB001523419858313RH1787621241.49    1 AB001523, AC003656, AL163298, AP001753
S/G/Y/R/B/O NT_011515AB001523419972143RH5757021241.90211630.0021259.101 AC003656
S/G/Y/R/B/O NT_011515AB001523420304723RH7830921248.52    1AB001517, AB001517, AB001523, AC003656, AL163298, AP001753, U61520
S/G/Y/R/B/O NT_011515AB001523420319843RH7068921241.90    1AB001517, AB001517, AB001523, AL163298, AP001753, U61520
S/G/Y/R/B/O NT_011515AB001523420322733RH6647621260.65    1AB001517, AB001517, AB001523, AC003656, AL163298, AP001753
S/G/Y/R/B/O NT_011515AB001517420631943RH4876621242.32    1 AB001517, AC003656, AL163298, AP001753, U53004
S/G/Y/R/B/O NT_011515AP001055420709303RH6831021241.90    1 AC003656, AL163298, AP001055, AP001753
S/G/Y/R/B/O NT_011515AP001055420712863RH5758821243.44  21254.301 AC003656, AL163298, AP001055, AP001753
S/G/Y/R/B/O NT_011515AP001055420715633RH3694821241.59    1 AC003656, AL163298, AP001055, AP001753
S/G/Y/R/B/O NT_011515AP001056421068653WI-5198    21238.401 AC003656, AL163298, AP001056, AP001753
S/G/Y/R/B/O NT_011515AP001057421268433          
S/G/Y/R/B/O NT_011515AP001058421332403RH4775321241.90    1 AL163298, AP001058, AP001753
S/G/Y/R/B/O NT_011515AP001058421492383RH9426921241.59    1 AL163298, AP001058, AP001753
S/G/Y/R/B/O NT_011515AP001058421528293RH5762321245.47  21256.401 AL163298, AP001058, AP001753
S/G/Y/R/B/O NT_011515AP001058421528383RH1240821241.59    1 AL163298, AP001058, AP001753
S/G/Y/R/B/O NT_011515AP001059421698593          
S/G/Y/R/B/O NT_011515AP001060421952103          
S/G/Y/R/B/O NT_011515AP001061422280053          
S/G/Y/R/B/O NT_011515AP001062422528393RH7595421245.27    1 AC003656, AL163299, AP001062, AP001754
S/G/Y/R/B/O NT_011515AP001062422531583RH4782221242.11    1 AC003656, AL163299, AP001062, AP001754
S/G/Y/R/B/O NT_011515AP001062422549873RH7524921242.11    1 AC003656, AL163299, AP001062, AP001754
S/G/Y/R/B/O NT_011515AP001062422559163RH6706621240.16    1 AC003656, AL163299, AP001062, AP001754
S/G/Y/R/B/O NT_011515AP001062422623313RH9255321242.63    1 AC003656, AL163299, AP001062, AP001754


  NT_011515 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011515AP001063422732233          
S/G/Y/R/B/O NT_011515AP001064423119293          
S/G/Y/R/B/O NT_011515AP001065423674923RH5753021242.11  21258.801 AL163299, AP001065, AP001754
S/G/Y/R/B/O NT_011515AP001065424235113RH6799021245.47    1AP001066, AC003656, AC026998, AL163299, AP001065, AP001066, AP001754
S/G/Y/R/B/O NT_011515AP001066424436193RH1614321245.47    1AP001067, AC003656, AC026998, AL163299, AP001066, AP001067, AP001754
S/G/Y/R/B/O NT_011515AP001067424610463          
S/G/Y/R/B/O NT_011515AJ011930426942153RH5756021245.27  21252.601 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427251593RH5759921245.47  21259.101 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427263563RH1829621245.47    1 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427307803RH7130721248.52    1 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427471223RH6646521245.47    1 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427745753RH7771021248.21    1 AC011782, AL163300
S/G/Y/R/B/O NT_011515AJ011930427747733RH7786521245.17    1 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930427758413RH5761821248.52  21239.301 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ011930428111073RH3889921245.47    1 AC011782, AJ011930, AL163300
S/G/Y/R/B/O NT_011515AJ239325428541553RH4832221245.47    1 AJ239325, AJ239327, AL163300
S/G/Y/R/B/O NT_011515AJ239325428545913RH32349  211594.0021238.001 AJ239325, AJ239327, AL163300
S/G/Y/R/B/O NT_011515AP001505428939163          
S/G/Y/R/B/O NT_011515AP001579430495603RH1558021245.37    1AL133499, AL163301, AL133499, AL163301
S/G/Y/R/B/O NT_011515AL133499431015063          
S/G/Y/R/B/O NT_011515AL163301431470213RH7489121245.17    1 AJ239326
S/G/Y/R/B/O NT_011515AL163301431510703RH1088321245.47    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301431863213IB2014    21237.001 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301432150203RH3893021245.47    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301432204593RH3891321245.47    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301432212093RH7575021248.52    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301432216413RH1693721245.47    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163301432219643RH3607221245.47    1 AJ239326, AL163301
S/G/Y/R/B/O NT_011515AL163302433286453RH9871121245.47    1 AJ239326, AL163302
S/G/Y/R/B/O NT_011515AL163302434374113RH8533  211594.00  1 AJ239326, AL133493, AL163302
S/G/Y/R/B/O NT_011515AL163302434382103RH7771521247.59    1 AJ239326, AL133493, AL163302
S/G/Y/R/B/O NT_011515AL163302434395353RH5752821248.62  21254.801 AJ239326, AL133493, AL163302
S/G/Y/R/B/O NT_011515AL163302434395773RH7657121249.04    1 AJ239326, AL133493, AL163302
S/G/Y/R/B/O NT_011515AL163302434397073RH7830421255.76    1 AJ239326, AL133493, AL163302
S/G/Y/R/B/O NT_011515AL163303435789843RH32444  211592.0021254.901 AC012285, AL133493, AL163303
S/G/Y/R/B/O NT_011515AL133492436854583RH5755621254.11  21250.301AL163303, AL133492, AL163303
S/G/Y/R/B/O NT_011515AL133492437136133RH2654421247.59    1AL163303, AL133492, AL163303
S/G/Y/R/B/O NT_011515AL592528437407213          
S/G/Y/R/B/O NT_011515AJ011931438060213RH4799521250.17    1AL163303, AJ011931, AL163303, AP000219, AP000341
S/G/Y/R/B/O NT_011515AJ239328438548433RH10223221250.17    1AL163303, AJ239328, AL163303, AP000219, AP000341
S/G/Y/R/B/O NT_011515AJ011932438818613RH9280221250.17    1AL163303, AJ011932, AL163303, AP000468
S/G/Y/R/B/O NT_011515AP001479439131203          
S/G/Y/R/B/O NT_011515AP001476439728593RH7870321253.70    1 AL163304, AP001476, AP001759
S/G/Y/R/B/O NT_011515AP001472439892143RH4852221250.97    1 AL163304, AP001472, AP001759
S/G/Y/R/B/O NT_011515AP001474440080363          
S/G/Y/R/B/O NT_011515AP001470440121763          
S/G/Y/R/B/O NT_011515AP001471440145743          
S/G/Y/R/B/O NT_011515AP001467440218803          
S/G/Y/R/B/O NT_011515AP001101440578593RH2670021253.30    1 AL163304, AP001759
S/G/Y/R/B/O NT_011515AP001101440583513RH5762221256.90  21238.201AP001473, AL163304, AP001101, AP001473, AP001759


  NT_011515 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGM ChrGM99 GB4WI ChrWIG3 ChrSHGC G3PlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011515AP001101440584663RH9153421252.19    1AP001473, AL163304, AP001101, AP001473, AP001759
S/G/Y/R/B/O NT_011515AP001473440599003          
S/G/Y/R/B/O NT_011515AP001475440625573          
S/G/Y/R/B/O NT_011515AP001468441100893RH7836121254.42    1 AL163304, AP001468, AP001759
S/G/Y/R/B/O NT_011515AP001468441101383RH5762121253.70  21247.001 AL163304, AP001468, AP001759
S/G/Y/R/B/O NT_011515AP001468441107023RH1264721256.80    1 AL163304, AP001468, AP001759
S/G/Y/R/B/O NT_011515AP001469441641383RH4843521252.19    1 AL163304, AP001469, AP001759
S/G/Y/R/B/O NT_011515AP001469441675083RH3891021254.42    1 AL163304, AP001469, AP001759
S/G/Y/R/B/O NT_011515AP000471442069393RH2858821256.28    1 AL163304, AP000471, AP001759
S/G/Y/R/B/O NT_011515AP001477442644493          
S/G/Y/R/B/O NT_011515AP000335443024053          
S/G/Y/R/B/O NT_011515AP000336443292233          
S/G/Y/R/B/O NT_011515AP000337443670483RH9157121254.42    1 AL163305, AP000215, AP000337, AP001760
S/G/Y/R/B/O NT_011515AP000338444695733RH5751621252.09  21244.401 AL163305, AP000216, AP000338, AP001760
S/G/Y/R/B/O NT_011515AP000338444871073RH38271  211592.00  1 AL163305, AP000216, AP000338, AP001760
S/G/Y/R/B/O NT_011515AP000339445051113RH5761921257.75  21249.801 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445052033RH7870221255.55    1 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445197723RH1425  211592.00  1 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445353573D21S2057    21247.901 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445580263RH6933421265.21    1 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445609623RH9254721257.54    1 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445711433RH5755121257.85  21249.801 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000339445736023RH6687521263.97    1 AL163305, AP000217, AP000339, AP001760
S/G/Y/R/B/O NT_011515AP000340445785803RH4698121258.92    1 AL163305, AP000217, AP000340, AP001760
S/G/Y/R/B/O NT_011515AP000340445797423RH32935  211593.00  1 AL163305, AP000217, AP000340, AP001760
S/G/Y/R/B/O NT_011515AP000340445799473RH6713121261.74    1 AL163305, AP000217, AP000340, AP001760
S/G/Y/R/B/O NT_011515AP000340445813483RH1222321258.92    1 AL163305, AP000217, AP000340, AP001760
S/G/Y/R/B/O NT_011515AP000340445826163RH10197121258.92    1 AL163305, AL163306, AP000217, AP000340, AP001760, AP001761
S/G/Y/R/B/O NT_011515AP000340445862073RH1044521261.41    1 AL163306, AP000217, AP000340, AP001761
S/G/Y/R/B/O NT_011515AP000340445869123RH4897121258.92    1 AL163306, AP000217, AP000340, AP001761
S/G/Y/R/B/O NT_011515AP001478446122233          
S/G/Y/R/B/O NT_011515 - RH10254921241.10    1AP001630, AC020600, AL163293, AP001630, AP001748
S/G/Y/R/B/O NT_011515 - WI-18875    21234.201AL442167, AP001610, AC005612, AF135187, AJ011929, AL163285, AL442167, AP001609, AP001610, L35673
S/G/Y/R/B/O NT_011515 - RH10397921248.52    0AJ011930, AP001067, AC026998, AJ011930, AL163300, AP001067
S/G/Y/R/B/O NT_011515 - RH3891221266.82    0  
S/G/Y/R/B/O NT_011515 - RH3892221247.49    0  
S/G/Y/R/B/O NT_011515 - RH4525821263.52    1AP001625, AC064818, AL163292, AP001625, AP001747
S/G/Y/R/B/O NT_011515 - RH4807921263.63    1AP001622, AB038161, AC015555, AL163291, AP001622, AP001746
S/G/Y/R/B/O NT_011515 - RH5752521264.08    1AP001619, AP001620, AC020557, AL163290, AP001619, AP001620, AP001745
S/G/Y/R/B/O NT_011515 - RH5752921266.94    1AP001623, AB038162, AC015555, AL163291, AP001623, AP001746
S/G/Y/R/B/O NT_011515 - RH5753221263.63    1AP001621, AC020557, AL163290, AP001621, AP001745
S/G/Y/R/B/O NT_011515 - RH5755921266.48    1AP001630, AC020600, AL163293, AP001630, AP001748, AP002085
S/G/Y/R/B/O NT_011515 - RH5757521266.13    1AP001625, AP001626, AC064818, AL163292, AP001625, AP001626, AP001747
S/G/Y/R/B/O NT_011515 - RH5761621239.63    1AP001628, AB039887, AL163293, AP001628, AP001748
S/G/Y/R/B/O NT_011515 - RH6653621263.18    0AP001623, AL163291, AP001623, AP001746
S/G/Y/R/B/O NT_011515 - RH7922621263.63    1AP001630, AP001631, AC020600, AF042836, AL163293, AP001630, AP001631, AP001748, AP002085
S/G/Y/R/B/O NT_011515 - RH9359321248.52    0