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  Chromosome 13 - YAC Map - Single Contig
 

Chromosome 13 - YAC Map - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009799 NT_033260 NT_033997 NT_009984 NT_009910 NT_033922 NT_033259 NT_024524
NT_028344 NT_009866 NT_009952 NT_027140 NT_024498


  NT_009952
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL356737922956072      
S/G/Y/R/B/O NT_009952AL157363924157783      
S/G/Y/R/B/O NT_009952AL355599925805103      
S/G/Y/R/B/O NT_009952AL353757926610843      
S/G/Y/R/B/O NT_009952AL354811927199913      
S/G/Y/R/B/O NT_009952AL160159929014583      
S/G/Y/R/B/O NT_009952AL138700930309333      
S/G/Y/R/B/O NT_009952AL450425930579713WI-493113225.001 AL450425
S/G/Y/R/B/O NT_009952AL450425930948223CHLC.ATC4F0113229.001 AL450425
S/G/Y/R/B/O NT_009952AL160036932825433D13S12913226.001 AL160036
S/G/Y/R/B/O NT_009952AL357275933663113      
S/G/Y/R/B/O NT_009952AL606810934344203      
S/G/Y/R/B/O NT_009952AL162455934537053CHLC.GATA30G1013227.001 AL162455
S/G/Y/R/B/O NT_009952AL162455934807053WI-1086213228.001 AL162455
S/G/Y/R/B/O NT_009952AL162455935816793D13S28113233.001 AL162455
S/G/Y/R/B/O NT_009952AL356598936233813      
S/G/Y/R/B/O NT_009952AL161426936942563D13S16713232.001 AL161426
S/G/Y/R/B/O NT_009952AL161426937608763WI-586313231.001 AL161426
S/G/Y/R/B/O NT_009952AL161426937817713CHLC.ATA19F0613230.001 AL161426
S/G/Y/R/B/O NT_009952AL354762938443173      
S/G/Y/R/B/O NT_009952AL139798939492163      
S/G/Y/R/B/O NT_009952AL137144939971763      
S/G/Y/R/B/O NT_009952AL139318941099733WI-926513234.001 AL139318
S/G/Y/R/B/O NT_009952AL359708942570523      
S/G/Y/R/B/O NT_009952AL137061943070353      
S/G/Y/R/B/O NT_009952AL159970945870583CHLC.GGAA8D1013235.001 AL159970
S/G/Y/R/B/O NT_009952AL139381946003023      
S/G/Y/R/B/O NT_009952AL157818947143233      
S/G/Y/R/B/O NT_009952AL359750948948083      
S/G/Y/R/B/O NT_009952AL356257949013463      
S/G/Y/R/B/O NT_009952AL357061951179703D13S127813236.001 AL357061
S/G/Y/R/B/O NT_009952AL627382951609773      
S/G/Y/R/B/O NT_009952AL139376952485873WI-669513237.001 AL139376
S/G/Y/R/B/O NT_009952AL139376952804023D13S15413238.001 AL139376
S/G/Y/R/B/O NT_009952AL138955953158943      
S/G/Y/R/B/O NT_009952AL136104954635983      
S/G/Y/R/B/O NT_009952AL607038954940253      
S/G/Y/R/B/O NT_009952AL162500955767493WI-581413239.001 AC053506, AL162500
S/G/Y/R/B/O NT_009952AL158192956818453      
S/G/Y/R/B/O NT_009952AL160253958678763      
S/G/Y/R/B/O NT_009952AL139087960513563      
S/G/Y/R/B/O NT_009952AL159979961231523      
S/G/Y/R/B/O NT_009952AL356098961776773      
S/G/Y/R/B/O NT_009952AL138816964095313D13S13213240.001 AL138816, AL356011
S/G/Y/R/B/O NT_009952AL353581965684203D13S124113241.001 AL353581
S/G/Y/R/B/O NT_009952AL356486966550443      
S/G/Y/R/B/O NT_009952AL359925967206893      
S/G/Y/R/B/O NT_009952AL161430969698203CHLC.GATA2A0213242.001 AL161430
S/G/Y/R/B/O NT_009952AL161430969698833CHLC.GATA43H0313245.001 AL161430
S/G/Y/R/B/O NT_009952AL442067970259683      


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL160393971742653      
S/G/Y/R/B/O NT_009952AL159151972337181      
S/G/Y/R/B/O NT_009952AL359746972868573      
S/G/Y/R/B/O NT_009952AL359502973344213CHLC.GATA21F0713243.001AL159151, AL159151, AL359502, AL603886
S/G/Y/R/B/O NT_009952AL359502973768383STSG-1017113244.001 AL359502, AL603886
S/G/Y/R/B/O NT_009952AL445605974810373      
S/G/Y/R/B/O NT_009952AL356580975262283      
S/G/Y/R/B/O NT_009952AL137120976853003      
S/G/Y/R/B/O NT_009952AL136300978744983AFM210WB613251.001 AC018779, AL136300
S/G/Y/R/B/O NT_009952AL445223979390993WI-433813247.001 AL445223
S/G/Y/R/B/O NT_009952AL161896979888253WI-492813248.001 AC022669, AL161896
S/G/Y/R/B/O NT_009952AL161896980418683D13S129813246.001 AC022669
S/G/Y/R/B/O NT_009952AL137249980697373D13S15913249.001 AC022669, AL137249
S/G/Y/R/B/O NT_009952AL137249980756243WI-952913250.001 AC022669, AL137249
S/G/Y/R/B/O NT_009952AL356423981687192      
S/G/Y/R/B/O NT_009952AL391670983407603      
S/G/Y/R/B/O NT_009952AL353574983560913      
S/G/Y/R/B/O NT_009952AL161420984484233AFMA273ZH113252.001 AL161420
S/G/Y/R/B/O NT_009952AL161420984626423FB20D613254.001 AL161420, AL357553
S/G/Y/R/B/O NT_009952AL161420984805473WI-682413253.002AL592148, AC026068, AL161420, AL357553, AL590088, AL592148
S/G/Y/R/B/O NT_009952AL139084986087223      
S/G/Y/R/B/O NT_009952AL391122987997623WI-292413257.001 AL391122
S/G/Y/R/B/O NT_009952AL159981988626613      
S/G/Y/R/B/O NT_009952AL160155989053993D13S128413258.001 AL160155
S/G/Y/R/B/O NT_009952AL160155989630563UTR-969313256.001 AL160155
S/G/Y/R/B/O NT_009952AL136961990205353      
S/G/Y/R/B/O NT_009952AL583784991192963      
S/G/Y/R/B/O NT_009952AL139035992529993WI-1077813259.001 AL139035
S/G/Y/R/B/O NT_009952AL359748992967043      
S/G/Y/R/B/O NT_009952AL445184993363683      
S/G/Y/R/B/O NT_009952AL137139994868143D13S123213260.001 AL137139
S/G/Y/R/B/O NT_009952AL355338996100953      
S/G/Y/R/B/O NT_009952AL356575997618573      
S/G/Y/R/B/O NT_009952AL353697999183843      
S/G/Y/R/B/O NT_009952AL1365261001849513D13S124013262.001 AL136526
S/G/Y/R/B/O NT_009952AL1365261001985643WI-725313263.001 AL136526
S/G/Y/R/B/O NT_009952AL3569661002269533      
S/G/Y/R/B/O NT_009952AL3590851002723301NIB140813261.002AC008620, AC008620, AL359085
S/G/Y/R/B/O NT_009952AL3567321004081343      
S/G/Y/R/B/O NT_009952AL1378791005200913CHLC.ATA26D0713264.001 AC067733, AC067734, AL137879
S/G/Y/R/B/O NT_009952AL1393741005691333      
S/G/Y/R/B/O NT_009952AL3918411006206693      
S/G/Y/R/B/O NT_009952AL1387071007197233WI-414913265.001 AC015638, AC018909, AL138707
S/G/Y/R/B/O NT_009952AL3548911008974213      
S/G/Y/R/B/O NT_009952AL3567781010010273      
S/G/Y/R/B/O NT_009952AL3558071010883243      
S/G/Y/R/B/O NT_009952AL1398001012373673      
S/G/Y/R/B/O NT_009952AL1601531013364403      
S/G/Y/R/B/O NT_009952AL5919091015363243D13S132313270.001 AL136965, AL591909
S/G/Y/R/B/O NT_009952AL5126291016869023WI-586813266.001 AL512629


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL1398021017255283      
S/G/Y/R/B/O NT_009952AL1618991017658793      
S/G/Y/R/B/O NT_009952AL3562661019701883D13S17413269.001 AL356266
S/G/Y/R/B/O NT_009952AL3562631020470113CHLC.GATA67H0813268.001 AL356263
S/G/Y/R/B/O NT_009952AL1591551020751173WI-329013267.001 AL159155
S/G/Y/R/B/O NT_009952AL1591551021259103D13S126613271.001 AL159155
S/G/Y/R/B/O NT_009952AL1591551021791933WI-439513272.001 AL159155
S/G/Y/R/B/O NT_009952AL1580631023167843D13S125613274.001 AL158063
S/G/Y/R/B/O NT_009952AL1580631023468103WI-728413273.001 AL158063
S/G/Y/R/B/O NT_009952AL1577691023838763      
S/G/Y/R/B/O NT_009952AL1372461025641473D13S28013275.001 AL137246
S/G/Y/R/B/O NT_009952AL1617711025956213      
S/G/Y/R/B/O NT_009952AL4451881027666533      
S/G/Y/R/B/O NT_009952AL5914981029306143      
S/G/Y/R/B/O NT_009952AL1627171029925403D13S15813276.001 AL162717
S/G/Y/R/B/O NT_009952AL1627171030459723WI-477313277.001 AL162717
S/G/Y/R/B/O NT_009952AL3547631032108851D13S25913280.001 AL354763
S/G/Y/R/B/O NT_009952AL3536201033001463CHLC.ATA9E0213278.001 AL353620
S/G/Y/R/B/O NT_009952AL3536201033001463CHLC.ATA13H1113279.001 AL353620
S/G/Y/R/B/O NT_009952AL3536201034064273CHLC.GATA100E0213281.001 AL353620
S/G/Y/R/B/O NT_009952AL3597611034327553      
S/G/Y/R/B/O NT_009952AL3562541035772873D13S27413282.001 AL356254
S/G/Y/R/B/O NT_009952AL4452261035823653      
S/G/Y/R/B/O NT_009952AL3588551036385043      
S/G/Y/R/B/O NT_009952AL1365241038550043WI-134313283.001 AL136524
S/G/Y/R/B/O NT_009952AL1624951039759213      
S/G/Y/R/B/O NT_009952AL1618971040502493      
S/G/Y/R/B/O NT_009952AL6037131042393563WI-95313284.001 AC011788, AL603713
S/G/Y/R/B/O NT_009952AL3563761042925933      
S/G/Y/R/B/O NT_009952AL3555521044342763      
S/G/Y/R/B/O NT_009952AL1577641045699983WI-538513286.001 AL157764, AL158037
S/G/Y/R/B/O NT_009952AL6068421046882283AFMA082WG913285.001 AL606842
S/G/Y/R/B/O NT_009952AL6068231047694923      
S/G/Y/R/B/O NT_009952AL5918471048066763      
S/G/Y/R/B/O NT_009952AL1389541049762723      
S/G/Y/R/B/O NT_009952AL3597511051413783D13S27713287.001 AL359751
S/G/Y/R/B/O NT_009952AL3597511051489213CHLC.GATA53C0613288.001 AL359751
S/G/Y/R/B/O NT_009952AL3568571052975453WI-484313289.001 AC008024, AL356857
S/G/Y/R/B/O NT_009952AL3597451053238203      
S/G/Y/R/B/O NT_009952AL1599821053867723      
S/G/Y/R/B/O NT_009952AL1387011055471841      
S/G/Y/R/B/O NT_009952AL1577591057276603WI-60313291.001 AC015681, AL157759
S/G/Y/R/B/O NT_009952AL6036321057612463      
S/G/Y/R/B/O NT_009952AL1616171058495843D13S27813290.001 AL161617
S/G/Y/R/B/O NT_009952AL1393791059192403CHLC.GATA44G1013293.001 AC021993, AL139379
S/G/Y/R/B/O NT_009952AL1393791059194343CHLC.GATA48F0813294.001 AC021993, AL139379
S/G/Y/R/B/O NT_009952AL1393791059537963D13S28613292.001 AC021993, AL139379
S/G/Y/R/B/O NT_009952AL1361591060278863      
S/G/Y/R/B/O NT_009952AL1386891061017983      
S/G/Y/R/B/O NT_009952AL4421271062053143      


  NT_009952 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerYAC ChrWI YACPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_009952AL1635341064134293      
S/G/Y/R/B/O NT_009952AL1625741064286312      
S/G/Y/R/B/O NT_009952AL3547411066132693      
S/G/Y/R/B/O NT_009952AL3651761066639173      
S/G/Y/R/B/O NT_009952AL1601581067187853      
S/G/Y/R/B/O NT_009952AL4452041068229993D13S17313296.001 AL445204
S/G/Y/R/B/O NT_009952AL4452041068505563AFMA304YB513295.001 AL445204
S/G/Y/R/B/O NT_009952AL1389141069049653CHLC.GATA51B0213297.001 AL138914
S/G/Y/R/B/O NT_009952AL4456491071914483WI-555013298.001 AL445649
S/G/Y/R/B/O NT_009952AL1372191072188153      
S/G/Y/R/B/O NT_009952AL1387101072504773      
S/G/Y/R/B/O NT_009952AL3598311073166583      
S/G/Y/R/B/O NT_009952AL1369641074923833CHLC.ATA23F0613299.001AC034296, AC034296, AL136964
S/G/Y/R/B/O NT_009952AL3594361075537703      
S/G/Y/R/B/O NT_009952AL1391891076256973AFM203ZA313302.001 AL139189
S/G/Y/R/B/O NT_009952AL1391891076823543CHLC.GATA10G0913300.001 AL139189
S/G/Y/R/B/O NT_009952AL3549851077306753      
S/G/Y/R/B/O NT_009952AL1577621078759043WI-944513301.001 AC013708, AF479264, AL157762, AL353192
S/G/Y/R/B/O NT_009952AL1386941080556313      
S/G/Y/R/B/O NT_009952AL5126481082127953      
S/G/Y/R/B/O NT_009952AL1577711083065593WI-582313303.001 AL157771
S/G/Y/R/B/O NT_009952AL1361321083858303      
S/G/Y/R/B/O NT_009952AL3909181086043763CHLC.GGAA22G0113305.001 AL356746, AL390918
S/G/Y/R/B/O NT_009952AL3531431086429243      
S/G/Y/R/B/O NT_009952AL1614311089101053WI-130413304.001 AL137243, AL161431, AL161615
S/G/Y/R/B/O NT_009952AL5838481089568023      
S/G/Y/R/B/O NT_009952AL1600311090272293      
S/G/Y/R/B/O NT_009952AL1635411091365203      
S/G/Y/R/B/O NT_009952AL1624971093612883D13S131513306.001 AC011864, AL162497
S/G/Y/R/B/O NT_009952AL1624971094122973WI-261813308.001 AL162497
S/G/Y/R/B/O NT_009952AL1624971094485723GCT16F0313307.001 AC011864, AL162497
S/G/Y/R/B/O NT_009952AL3558101094720343      
S/G/Y/R/B/O NT_009952AL3549471095756833      
S/G/Y/R/B/O NT_009952AL3559741095890913      
S/G/Y/R/B/O NT_009952AL3907551098186253WI-911413309.001 AC016380, AL390755, AP001146
S/G/Y/R/B/O NT_009952AL1617731099044143      
S/G/Y/R/B/O NT_009952AL1591531100566093      
S/G/Y/R/B/O NT_009952AL1393851103082373WI-650013310.001 AL139385
S/G/Y/R/B/O NT_009952AL1578201103323203      
S/G/Y/R/B/O NT_009952AL1578751104277853      
S/G/Y/R/B/O NT_009952AL4421281105526793      
S/G/Y/R/B/O NT_009952AL3537041107057053      
S/G/Y/R/B/O NT_009952AL3907541108940903WI-369013311.001 AL390754
S/G/Y/R/B/O NT_009952AL1390861108998573      
S/G/Y/R/B/O NT_009952AL1603951110397673D13S26113312.001AC005054, AC005054
S/G/Y/R/B/O NT_009952AL1627141111649553      
S/G/Y/R/B/O NT_009952AL3596491112273133      
S/G/Y/R/B/O NT_009952AC0050541113702051      
S/G/Y/R/B/O NT_009952AC0342961113741351      
S/G/Y/R/B/O NT_009952 - D13S13613255.000