Chromosome 6 - Clone Overlaps

Chromosome 6 - Clone Overlaps - Single Contig

Description of this page

Line color code:

White: overlap with immediately succeeding clone
Green: overlap with clone in same contig
Pink: overlap with clone in same chromosome, different contig
Red: overlap with clone on different chromosome
Yellow: overlap with clone not used in assembly

NT_034880	NT_007592	NT_033172	NT_034881	NT_033948	NT_007540	NT_007299	NT_019424
NT_033944	NT_025741	NT_023451	NT_007422	NT_007302	NT_007627	NT_007583

NT_019424

Links	Contig1	Acc1	Start1	Phs	Chr2	Contig2	Acc2	Start2	Phs	Strong Overlap	Medium Overlap	Weak Overlap	Total Overlap
S/G/Y/R/B/O	NT_019424	AL731777	95847245	3	chr6	NT_019424	AL671884	95977355	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL731777	95847245	3			AC021595	95397544		45713	0	33551	79264
S/G/Y/R/B/O	NT_019424	AL731777	95847245	3			AC080175	95397544		115672	0	0	115672
S/G/Y/R/B/O	NT_019424	AL671884	95977355	3	chr6	NT_019424	AL607077	96080628	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	AL671884	95977355	3			AC021595	95977355		17323	0	3715	21038
S/G/Y/R/B/O	NT_019424	AL607077	96080628	3	chr6	NT_019424	AL390789	96254094	3	22096	0	0	22096
S/G/Y/R/B/O	NT_019424	AL390789	96254094	3	chr6	NT_019424	AL034348	96379431	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL390789	96254094	3			AL356303	96379431		30341	0	0	30341
S/G/Y/R/B/O	NT_019424	AL034348	96379431	3	chr6	NT_019424	AL139108	96499845	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL034348	96379431	3			AL356303	96080628		120198	0	0	120198
S/G/Y/R/B/O	NT_019424	AL139108	96499845	3	chr6	NT_019424	AL512447	96530289	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL512447	96530289	3	chr6	NT_019424	AL512406	96632275	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL512406	96632275	3	chr6	NT_019424	AL499626	96712422	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL499626	96712422	3	chr6	NT_019424	AL021367	96755979	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL021367	96755979	3	chr6	NT_019424	AL590404	96895229	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590404	96895229	3	chr6	NT_019424	AL132776	97002167	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL132776	97002167	3	chr6	NT_019424	AL355143	97094884	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL355143	97094884	3	chr6	NT_019424	AL033379	97157364	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL033379	97157364	3	chr6	NT_019424	AL159985	97265025	3	0	0	101	101
S/G/Y/R/B/O	NT_019424	AL033379	97157364	3			AL162577	97265025		23720	0	0	23720
S/G/Y/R/B/O	NT_019424	AL159985	97265025	3	chr6	NT_019424	AL033375	97379445	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL159985	97265025	3			AL162577	97157364		106492	626	7273	114391
S/G/Y/R/B/O	NT_019424	AL033375	97379445	3	chr6	NT_019424	AL356958	97530134	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL033375	97379445	3			AL162577	97157364		15791	0	0	15791
S/G/Y/R/B/O	NT_019424	AL356958	97530134	3	chr6	NT_019424	AL023656	97556888	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL356958	97530134	3			AL078589	97379445		19544	0	0	19544
S/G/Y/R/B/O	NT_019424	AL023656	97556888	3	chr6	NT_019424	AL590484	97669149	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590484	97669149	3	chr6	NT_019424	AL353679	97734289	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL353679	97734289	3	chr6	NT_019424	Z84719	97834300	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL353679	97734289	3			AC021806	97734289		21979	6802	0	28781
S/G/Y/R/B/O	NT_019424	Z84719	97834300	3	chr6	NT_019424	AL358873	97958210	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	Z84719	97834300	3			AC021806	97834300		16099	1716	22995	40810
S/G/Y/R/B/O	NT_019424	AL358873	97958210	3	chr6	NT_019424	AL596208	98049239	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL596208	98049239	3	chr6	NT_019424	AL080316	98162035	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL080316	98162035	3	chr6	NT_019424	AL357124	98265172	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL357124	98265172	3	chr6	NT_019424	AL590239	98385111	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL357124	98265172	3			AL590865	98385111		21076	0	0	21076
S/G/Y/R/B/O	NT_019424	AL590239	98385111	3	chr6	NT_019424	AL591102	98510326	3	0	1998	0	1998
S/G/Y/R/B/O	NT_019424	AL590239	98385111	3			AL590865	98265172		84621	0	9178	93799
S/G/Y/R/B/O	NT_019424	AL591102	98510326	3	chr6	NT_019424	AL590727	98554026	3	0	0	1540	1540
S/G/Y/R/B/O	NT_019424	AL591102	98510326	3			AL590865	98554026		44584	0	0	44584
S/G/Y/R/B/O	NT_019424	AL590727	98554026	3	chr6	NT_019424	AL589740	98681939	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL590727	98554026	3			AC018703	98554026		16717	0	1099	17816
S/G/Y/R/B/O	NT_019424	AL590727	98554026	3			AC023995	98554026		52012	3827	13307	69146
S/G/Y/R/B/O	NT_019424	AL589740	98681939	3	chr6	NT_019424	AL607071	98869702	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL589740	98681939	3			AC018703	98510326		110393	4558	17328	132279
S/G/Y/R/B/O	NT_019424	AL589740	98681939	3			AC025485	98510326		15488	0	0	15488
S/G/Y/R/B/O	NT_019424	AL589740	98681939	3			AC031982	98510326		109579	3629	0	113208
S/G/Y/R/B/O	NT_019424	AL607071	98869702	3	chr6	NT_019424	Z84482	98939708	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	Z84482	98939708	3	chr6	NT_019424	AL590395	99023298	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	Z84482	98939708	3			AC022813	98554026		57764	2937	0	60701
S/G/Y/R/B/O	NT_019424	Z84482	98939708	3			AC025485	98554026		27603	1828	0	29431
S/G/Y/R/B/O	NT_019424	AL590395	99023298	3	chr6	NT_019424	AL589826	99177945	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL590395	99023298	3			AC022813	99023298		32341	0	19042	51383
S/G/Y/R/B/O	NT_019424	AL589826	99177945	3	chr6	NT_019424	AL022395	99295942	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL022395	99295942	3	chr6	NT_019424	AL078603	99422724	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL078603	99422724	3	chr6	NT_019424	AL590022	99572979	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL078603	99422724	3			AC011935	99177945		73797	2715	28863	105375
S/G/Y/R/B/O	NT_019424	AL590022	99572979	3	chr6	NT_019424	AL591803	99621778	3	0	1997	0	1997
S/G/Y/R/B/O	NT_019424	AL590022	99572979	3			AC011935	99295942		35407	1539	10316	47262
S/G/Y/R/B/O	NT_019424	AL591803	99621778	3	chr6	NT_019424	AL034371	99710103	3	0	1999	0	1999
S/G/Y/R/B/O	NT_019424	AL034371	99710103	3	chr6	NT_019424	AL513550	99819356	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL513550	99819356	3	chr6	NT_019424	AL137784	99947161	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL137784	99947161	3	chr6	NT_019424	AL035087	100074474	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL137784	99947161	3			AC025216	99947161		28822	3612	16821	49255
S/G/Y/R/B/O	NT_019424	AL137784	99947161	3			AL357622	99947161		37371	0	26725	64096
S/G/Y/R/B/O	NT_019424	AL035087	100074474	3	chr6	NT_019424	AL390959	100194324	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL035087	100074474	3			AC025216	99819356		30816	1756	0	32572
S/G/Y/R/B/O	NT_019424	AL035087	100074474	3			AL357622	99819356		55694	0	0	55694
S/G/Y/R/B/O	NT_019424	AL390959	100194324	3	chr6	NT_019424	AL590725	100299463	3	2807	0	0	2807
S/G/Y/R/B/O	NT_019424	AL590725	100299463	3	chr6	NT_019424	AL603909	100477350	3	0	2000	0	2000
S/G/Y/R/B/O	NT_019424	AL590725	100299463	3			AC027643	100299463		114868	2503	9429	126800
S/G/Y/R/B/O	NT_019424	AL603909	100477350	3	chr6	NT_019424	AL590732	100478851	3	2000	0	0	2000
S/G/Y/R/B/O	NT_019424	AL590732	100478851	3	chr6	NT_019424	AL080285	100547943	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL080285	100547943	3	chr6	NT_019424	AL583822	100718646	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL080285	100547943	3			AL590309	100718646		12689	7511	0	20200
S/G/Y/R/B/O	NT_019424	AL583822	100718646	3	chr6	NT_019424	AL121948	100845160	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL583822	100718646	3			AC027499	100478851		50640	0	0	50640
S/G/Y/R/B/O	NT_019424	AL583822	100718646	3			AL590309	100547943		80436	10124	2544	93104
S/G/Y/R/B/O	NT_019424	AL121948	100845160	3	chr6	NT_019424	Z86062	100865087	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL121948	100845160	3			AC027499	100547943		16484	3429	0	19913
S/G/Y/R/B/O	NT_019424	AL121948	100845160	3			AL590309	100547943		14432	664	0	15096
S/G/Y/R/B/O	NT_019424	Z86062	100865087	3	chr6	NT_019424	AL513207	101041919	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	Z86062	100865087	3			AC026619	100865087		42047	0	1276	43323
S/G/Y/R/B/O	NT_019424	Z86062	100865087	3			AC027499	100865087		49878	2516	1709	54103
S/G/Y/R/B/O	NT_019424	AL513207	101041919	3	chr6	NT_019424	AL121965	101053301	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL121965	101053301	3	chr6	NT_019424	AL591585	101166223	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL121965	101053301	3			AC026619	100865087		62892	0	15636	78528
S/G/Y/R/B/O	NT_019424	AL591585	101166223	3	chr6	NT_019424	AL356122	101206116	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL356122	101206116	3	chr6	NT_019424	AL133338	101276971	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL133338	101276971	3	chr6	NT_019424	AL161720	101397185	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL161720	101397185	3	chr6	NT_019424	AL109934	101423535	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL109934	101423535	3	chr6	NT_019424	AL450427	101518782	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL109934	101423535	3			AL356434	101397185		11905	2926	15315	30146
S/G/Y/R/B/O	NT_019424	AL450427	101518782	3	chr6	NT_019424	AL160404	101587523	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL160404	101587523	3	chr6	NT_019424	AL365276	101614926	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL365276	101614926	3	chr6	NT_019424	AP002528	101693675	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL365276	101614926	3			AL139107	101518782		15693	0	11234	26927
S/G/Y/R/B/O	NT_019424	AL365276	101614926	3			AL356861	101587523		38168	0	0	38168
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3	chr6	NT_019424	AL357058	101887511	3	54630	0	0	54630
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3	chr6	NT_019424	AL109919	101942216	3	51399	0	0	51399
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AB041511	101587523		157886	0	0	157886
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AB041731	101587523		93227	0	0	93227
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AC013311	101587523		151089	2658	0	153747
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AC023579	101587523		150866	0	0	150866
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AL139107	101942216		26034	0	0	26034
S/G/Y/R/B/O	NT_019424	AP002528	101693675	3			AL356861	101942216		129127	0	52827	181954
S/G/Y/R/B/O	NT_019424	AL357058	101887511	3	chr6	NT_019424	AL109919	101942216	3	0	0	100	100
S/G/Y/R/B/O	NT_019424	AL357058	101887511	3			AB041511	101887511		54604	0	0	54604
S/G/Y/R/B/O	NT_019424	AL357058	101887511	3			AB041731	101887511		41729	0	0	41729
S/G/Y/R/B/O	NT_019424	AL357058	101887511	3			AC013311	101887511		54119	0	0	54119
S/G/Y/R/B/O	NT_019424	AL357058	101887511	3			AL356861	101942216		31729	0	0	31729
S/G/Y/R/B/O	NT_019424	AL109919	101942216	3	chr6	NT_019424	AP002529	101993641	3	95877	0	0	95877
S/G/Y/R/B/O	NT_019424	AL109919	101942216	3	chr6	NT_019424	AP002528	101693675	3	51399	0	0	51399
S/G/Y/R/B/O	NT_019424	AL109919	101942216	3			AB041731	101693675		114308	0	0	114308
S/G/Y/R/B/O	NT_019424	AL109919	101942216	3			AB042031	101693675		85908	0	0	85908
S/G/Y/R/B/O	NT_019424	AL109919	101942216	3			AC013311	101693675		53604	0	0	53604
S/G/Y/R/B/O	NT_019424	AP002529	101993641	3	chr6	NT_019424	AP002530	102293641	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002529	101993641	3			AB041731	101993641		63013	0	0	63013
S/G/Y/R/B/O	NT_019424	AP002529	101993641	3			AB042031	101993641		194710	0	0	194710
S/G/Y/R/B/O	NT_019424	AP002529	101993641	3			AL139104	101942216		36429	0	19897	56326
S/G/Y/R/B/O	NT_019424	AP002529	101993641	3			AL356438	101942216		85337	0	0	85337
S/G/Y/R/B/O	NT_019424	AP002530	102293641	3	chr6	NT_019424	AP002531	102593641	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002530	102293641	3			AB041340	101942216		126989	0	0	126989
S/G/Y/R/B/O	NT_019424	AP002530	102293641	3			AB042030	101942216		111926	0	0	111926
S/G/Y/R/B/O	NT_019424	AP002530	102293641	3			AL133403	101942216		10790	0	0	10790
S/G/Y/R/B/O	NT_019424	AP002530	102293641	3			AL355532	101942216		177551	0	0	177551
S/G/Y/R/B/O	NT_019424	AP002531	102593641	3	chr6	NT_019424	AL592298	102748617	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AP002531	102593641	3			AB042235	101942216		77918	0	0	77918
S/G/Y/R/B/O	NT_019424	AP002531	102593641	3			AL133403	101942216		73297	2702	10936	86935
S/G/Y/R/B/O	NT_019424	AL592298	102748617	3	chr6	NT_019424	AL357139	102797217	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL357139	102797217	3	chr6	NT_019424	AL357506	102923639	3	0	0	0	0
S/G/Y/R/B/O	NT_019424	AL357506	102923639	3