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  Chromosome 11 - Genetic Maps - Single Contig
 

Chromosome 11 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_009407 NT_009308 NT_008953 NT_008937 NT_024164 NT_033238 NT_009368 NT_028310
NT_033239 NT_009325 NT_008957 NT_024194 NT_033233 NT_033231 NT_028309 NT_030795
NT_017854 NT_009062 NT_024163 NT_024275 NT_009038 NT_009306 NT_009307 NT_030792
NT_030801 NT_024200 NT_024283 NT_033235 NT_009182 NT_033242 NT_008952 NT_024172
NT_033236 NT_024189 NT_009237 NT_024229 NT_009020 NT_024192 NT_033915 NT_009296
NT_009178 NT_008978 NT_024343 NT_027118 NT_027110 NT_030109 NT_024169 NT_033902
NT_033903 NT_033913 NT_033994 NT_033237 NT_009405 NT_033232 NT_024160 NT_030106
NT_033241 NT_033923 NT_033926 NT_033900 NT_033929 NT_033930 NT_033925 NT_033924
NT_033928 NT_024149 NT_033927 NT_033243 NT_033240 NT_008984 NT_009151 NT_033244
NT_033899 NT_030800 NT_033901


  NT_033927
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033927AP001104727636293        
S/G/Y/R/B/O NT_033927AP001324729433563        
S/G/Y/R/B/O NT_033927AP000560730850203        
S/G/Y/R/B/O NT_033927AP001992731004293        
S/G/Y/R/B/O NT_033927AP003175732548033        
S/G/Y/R/B/O NT_033927AP001972733509063UT5088  1177.781 AC079973
S/G/Y/R/B/O NT_033927AP000744735962353AFM199YH101182.001177.781 AP000482, AP000744, AP001882
S/G/Y/R/B/O NT_033927AP002815737189213AFMA115XF11181.901177.781 AP002354, AP002386, AP002815
S/G/Y/R/B/O NT_033927AP002815737457293UT694  1177.781 AP000584
S/G/Y/R/B/O NT_033927AP002815737459203UT693  1177.781 AP000584, AP002386
S/G/Y/R/B/O NT_033927AP001922738419743        
S/G/Y/R/B/O NT_033927AP003031740252723        
S/G/Y/R/B/O NT_033927AP003168741847943AFM238XE71181.801177.781 AC040946, AP003168
S/G/Y/R/B/O NT_033927AP002340742321933        
S/G/Y/R/B/O NT_033927AP000785743960553        
S/G/Y/R/B/O NT_033927AP002360745198213        
S/G/Y/R/B/O NT_033927AP003165746914163        
S/G/Y/R/B/O NT_033927AP001189749187813AFMB359WH11183.501179.431 AP001189
S/G/Y/R/B/O NT_033927AP003101749756943        
S/G/Y/R/B/O NT_033927AP003119750773633        
S/G/Y/R/B/O NT_033927AP002498751116893        
S/G/Y/R/B/O NT_033927AP000752752331203        
S/G/Y/R/B/O NT_033927AP001855754910553AFM294XE11184.301179.981 AC087609, AP001855
S/G/Y/R/B/O NT_033927AP002827754960733        
S/G/Y/R/B/O NT_033927AP000486755582603AFM282XC11183.401179.981 AC019076, AC084778
S/G/Y/R/B/O NT_033927AP000486756420293AFMA106WA51184.401179.981 AC084778, AC087609, AP000486
S/G/Y/R/B/O NT_033927AP003680757058643        
S/G/Y/R/B/O NT_033927AP002789757526113        
S/G/Y/R/B/O NT_033927AP000609758548013AFM107XC71184.501179.981 AP000609
S/G/Y/R/B/O NT_033927AP002343759711893AFM155XH101184.201179.431 AP002343
S/G/Y/R/B/O NT_033927AP000580760400063        
S/G/Y/R/B/O NT_033927AP002812760615373        
S/G/Y/R/B/O NT_033927AP003032762282593        
S/G/Y/R/B/O NT_033927AP002520763769193AFM256ZB51184.601179.981 AC023532, AP001447, AP002520
S/G/Y/R/B/O NT_033927AP002985763817153        
S/G/Y/R/B/O NT_033927AP003086765844373        
S/G/Y/R/B/O NT_033927AP003110767268753        
S/G/Y/R/B/O NT_033927AP002768769700083AFMB334YC11185.801181.261 AP002768
S/G/Y/R/B/O NT_033927AP002515770501833        
S/G/Y/R/B/O NT_033927AP002958772488903AFM203VG11187.001182.531 AC011980, AC079194, AP002470, AP002958
S/G/Y/R/B/O NT_033927AP002957773468543AFM329WB51185.701182.531AP001547, AP001547, AP002957
S/G/Y/R/B/O NT_033927AP001547773985403AFMB343YF51187.101182.571 AP001547
S/G/Y/R/B/O NT_033927AP000610774896503        
S/G/Y/R/B/O NT_033927AP001838777144343AFM157XE11188.401183.831 AP001838
S/G/Y/R/B/O NT_033927AP003024777223543        
S/G/Y/R/B/O NT_033927AP001978778840053AFMB055YD11189.001184.381AP000478, AC036130, AP000478, AP001978
S/G/Y/R/B/O NT_033927AP000478779182543        
S/G/Y/R/B/O NT_033927AP002350779826473        
S/G/Y/R/B/O NT_033927AP001541780814933        
S/G/Y/R/B/O NT_033927AP001284783227863AFMA132XH91188.301184.131 AP000614


  NT_033927 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033927AP000764784879423GATA30G01  1185.481AC022316, AC022316, AC074187, AP000764
S/G/Y/R/B/O NT_033927AC022316785313133        
S/G/Y/R/B/O NT_033927AP002984787467953ATA10D05  1184.311AC018897, AC018897, AP002984
S/G/Y/R/B/O NT_033927AC018897787581463        
S/G/Y/R/B/O NT_033927AP003036788271733        
S/G/Y/R/B/O NT_033927AP002759788801323        
S/G/Y/R/B/O NT_033927AP003679790566503        
S/G/Y/R/B/O NT_033927AP003398792223943GATA2D11  1183.831 AC026059, AP003398
S/G/Y/R/B/O NT_033927AP002960792690773        
S/G/Y/R/B/O NT_033927AP003464793457903        
S/G/Y/R/B/O NT_033927AP002801794920753        
S/G/Y/R/B/O NT_033927AP003107797091933        
S/G/Y/R/B/O NT_033927AP002783797442953        
S/G/Y/R/B/O NT_033927AP003081799089763        
S/G/Y/R/B/O NT_033927AP002988799356983        
S/G/Y/R/B/O NT_033927AP002802800967063GGAA2C10  1185.481 AP002802
S/G/Y/R/B/O NT_033927AP002802801252253ATA21A09  1184.381 AP002802
S/G/Y/R/B/O NT_033927AP001976802423723        
S/G/Y/R/B/O NT_033927AP000623803669533AFM063YG11189.801185.481AP001179, AP001179
S/G/Y/R/B/O NT_033927AP001179803716943        
S/G/Y/R/B/O NT_033927AP003060805539873        
S/G/Y/R/B/O NT_033927AP003773807164953        
S/G/Y/R/B/O NT_033927AP000793807599783        
S/G/Y/R/B/O NT_033927AP002796809231023        
S/G/Y/R/B/O NT_033927AP001646810101793        
S/G/Y/R/B/O NT_033927AP000893811768803        
S/G/Y/R/B/O NT_033927AP001767812853363        
S/G/Y/R/B/O NT_033927AP000873814258973        
S/G/Y/R/B/O NT_033927AP002500815382553        
S/G/Y/R/B/O NT_033927AP000446815851643        
S/G/Y/R/B/O NT_033927AP003026817539563UT2444  1183.831 AC011207, AP003026
S/G/Y/R/B/O NT_033927AP000773817924783        
S/G/Y/R/B/O NT_033927AP002370819543583        
S/G/Y/R/B/O NT_033927AP002751820833463AFM311WH51190.701186.081 AC067758, AP002751
S/G/Y/R/B/O NT_033927AC023118821555483        
S/G/Y/R/B/O NT_033927AP002797822793763        
S/G/Y/R/B/O NT_033927AP003305825467753UT2000  1194.181 AC019139, AC062011, AP003305
S/G/Y/R/B/O NT_033927AP001984825731153        
S/G/Y/R/B/O NT_033927AP001791826330703        
S/G/Y/R/B/O NT_033927AP000852827833633AFMB031WE91191.501186.981 AC011023, AP000852
S/G/Y/R/B/O NT_033927AP001825830523983AFMB072ZG91192.501187.891 AP001825
S/G/Y/R/B/O NT_033927AP000857831948993AFM338XE11192.501187.891 AC019020, AP000857
S/G/Y/R/B/O NT_033927AP000639832714103        
S/G/Y/R/B/O NT_033927AP003093833604163        
S/G/Y/R/B/O NT_033927AP003095834335103        
S/G/Y/R/B/O NT_033927AP002803834629543        
S/G/Y/R/B/O NT_033927AP003035835901063GATA63C08  1187.891 AC023410, AC037434, AP003035
S/G/Y/R/B/O NT_033927AP002878837531663        
S/G/Y/R/B/O NT_033927AP000642838574783        
S/G/Y/R/B/O NT_033927AP000974840187363        


  NT_033927 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_033927AP003128841417323GATA45H10  1187.891 AC016486, AP003128
S/G/Y/R/B/O NT_033927AP000767841672713        
S/G/Y/R/B/O NT_033927AP003097844428283AFMA060ZD51192.401187.891 AC013370, AC025974, AP003097
S/G/Y/R/B/O NT_033927AP003084844604603        
S/G/Y/R/B/O NT_033927AP001148845270623        
S/G/Y/R/B/O NT_033927AP002492846939033        
S/G/Y/R/B/O NT_033927AP001831849133943AFMA049WA51193.001188.491 AP000632, AP001831, AP002506
S/G/Y/R/B/O NT_033927AP003059849284993        
S/G/Y/R/B/O NT_033927AP000654850154763        
S/G/Y/R/B/O NT_033927AP001528851393343GAAT3A05  1189.691 AP001528
S/G/Y/R/B/O NT_033927AP001528851900453MFD216  1189.692AC018963, AC018963, AC020673, AP001528, AP002890
S/G/Y/R/B/O NT_033927AP002967852704263        
S/G/Y/R/B/O NT_033927AP001102854551163        
S/G/Y/R/B/O NT_033927AP000811855136593        
S/G/Y/R/B/O NT_033927AP003497856877153        
S/G/Y/R/B/O NT_033927 - AFMA141XD11190.601186.080  
S/G/Y/R/B/O NT_033927 - AFM144YC1  1189.691 AC072050, AC093201, AP001784