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  Chromosome 20 - Genetic Maps - Single Contig
 

Chromosome 20 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011387 NT_025215 NT_028392 NT_011362 NT_030871 NT_011333


  NT_011362
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL450465346755723        
S/G/Y/R/B/O NT_011362AL445705347227113        
S/G/Y/R/B/O NT_011362AL390374347805413        
S/G/Y/R/B/O NT_011362AL050318348462723        
S/G/Y/R/B/O NT_011362AL031662349912403        
S/G/Y/R/B/O NT_011362AL132768350578813        
S/G/Y/R/B/O NT_011362AL391602351816093        
S/G/Y/R/B/O NT_011362AL079335351958773        
S/G/Y/R/B/O NT_011362AL365505352668943        
S/G/Y/R/B/O NT_011362AL391114353682943        
S/G/Y/R/B/O NT_011362AL136172354474173        
S/G/Y/R/B/O NT_011362AL031659355167303        
S/G/Y/R/B/O NT_011362AL034422357221323AFMA123WD12050.702051.361 AL034422
S/G/Y/R/B/O NT_011362AL390014357312093        
S/G/Y/R/B/O NT_011362AL133293357787563AFMA163XH12051.702051.361 AL133293
S/G/Y/R/B/O NT_011362AL133293357990903AFMB291XD92050.702051.361 AL133293
S/G/Y/R/B/O NT_011362AL132873358031183        
S/G/Y/R/B/O NT_011362AL109614358164313        
S/G/Y/R/B/O NT_011362AL162293360107563        
S/G/Y/R/B/O NT_011362AL118499360502853        
S/G/Y/R/B/O NT_011362AL023804361717923AFM189XB62050.702051.361 AL023804
S/G/Y/R/B/O NT_011362AL109964362262363        
S/G/Y/R/B/O NT_011362AL109823363219873        
S/G/Y/R/B/O NT_011362AL031651364605623        
S/G/Y/R/B/O NT_011362AL359555366274003        
S/G/Y/R/B/O NT_011362AL583962366690663        
S/G/Y/R/B/O NT_011362AL499625366750523        
S/G/Y/R/B/O NT_011362AL391692366878683        
S/G/Y/R/B/O NT_011362AL080249367837903AFMB286YE92053.602054.091 AL080249, AL391095
S/G/Y/R/B/O NT_011362AL391693367934003        
S/G/Y/R/B/O NT_011362AL049868368009173        
S/G/Y/R/B/O NT_011362AL035419369604523GATA42A03  2054.091 AL035419
S/G/Y/R/B/O NT_011362AL133519370394313        
S/G/Y/R/B/O NT_011362AL031657371356303        
S/G/Y/R/B/O NT_011362AL121889372561603        
S/G/Y/R/B/O NT_011362AL023803372788323        
S/G/Y/R/B/O NT_011362AL136990374535973AFM224YC12053.602054.091 AL136990
S/G/Y/R/B/O NT_011362AL035251375424393AFM345VH52053.602054.091 AL035251
S/G/Y/R/B/O NT_011362AL121588376205463        
S/G/Y/R/B/O NT_011362AL031661377800943UT236  2054.091 AL031661
S/G/Y/R/B/O NT_011362AL109611378610843        
S/G/Y/R/B/O NT_011362AL132981379611923        
S/G/Y/R/B/O NT_011362AL139163380732783        
S/G/Y/R/B/O NT_011362AL118523381213833        
S/G/Y/R/B/O NT_011362AL133419382764963        
S/G/Y/R/B/O NT_011362AL009050385251953UT1675  2055.741 AL009050
S/G/Y/R/B/O NT_011362AL009050385253063GATA90E02  2055.741 AL009050
S/G/Y/R/B/O NT_011362AL121828385268703        
S/G/Y/R/B/O NT_011362AL031256385977763GATA141H08  2055.741 AL031256
S/G/Y/R/B/O NT_011362AL031256386109963AFM142XH42054.902055.741 AL031256


  NT_011362 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL118521387065853        
S/G/Y/R/B/O NT_011362AL049691387284263        
S/G/Y/R/B/O NT_011362AL034552388975693        
S/G/Y/R/B/O NT_011362AL035665389530383        
S/G/Y/R/B/O NT_011362AL034431391396223AFMA218WA52055.502056.291 AL034431
S/G/Y/R/B/O NT_011362AL050317391813373        
S/G/Y/R/B/O NT_011362AL031660393421153AFM051XF122056.102056.831 AL031660
S/G/Y/R/B/O NT_011362AL035652393770773AFMA239WD52056.002056.831 AL035652
S/G/Y/R/B/O NT_011362AL022394394620513        
S/G/Y/R/B/O NT_011362AL031257396084983        
S/G/Y/R/B/O NT_011362AL132654396858003        
S/G/Y/R/B/O NT_011362AL031667397148633        
S/G/Y/R/B/O NT_011362AL121674398572823        
S/G/Y/R/B/O NT_011362AL031669398962613        
S/G/Y/R/B/O NT_011362AL354812399903853        
S/G/Y/R/B/O NT_011362AL133229400702763AFM193XC92056.102056.831 AL133229
S/G/Y/R/B/O NT_011362AL359984401680513        
S/G/Y/R/B/O NT_011362AL031654402300603        
S/G/Y/R/B/O NT_011362AL049812403363333        
S/G/Y/R/B/O NT_011362AL024473404421793        
S/G/Y/R/B/O NT_011362AL035459405589323AFM163YH82056.602057.381 AL035459
S/G/Y/R/B/O NT_011362Z93942406865143AFMA285WF12056.602057.381 Z93942
S/G/Y/R/B/O NT_011362AL022239407438153        
S/G/Y/R/B/O NT_011362AL109826408778513UT1688  2055.741 AL109826
S/G/Y/R/B/O NT_011362AL035666409287063        
S/G/Y/R/B/O NT_011362AL031656409759403        
S/G/Y/R/B/O NT_011362AL136461410874813        
S/G/Y/R/B/O NT_011362AL121763411362413        
S/G/Y/R/B/O NT_011362AL031676412601293        
S/G/Y/R/B/O NT_011362AL117374414453373AFMC013YH92057.602058.481 AL117374
S/G/Y/R/B/O NT_011362AL359695414705663        
S/G/Y/R/B/O NT_011362AL021395415274493        
S/G/Y/R/B/O NT_011362AL138806417049113        
S/G/Y/R/B/O NT_011362AL031681418239093AFM029YC32057.702058.481 AL031681
S/G/Y/R/B/O NT_011362Z98752418798293        
S/G/Y/R/B/O NT_011362AL121886419640523        
S/G/Y/R/B/O NT_011362AL161944421000713        
S/G/Y/R/B/O NT_011362AL035089422195623GGAA7E10  2058.481 AL035089
S/G/Y/R/B/O NT_011362AL035089422241113UT653  2058.481 AL035089
S/G/Y/R/B/O NT_011362AL353797422850433        
S/G/Y/R/B/O NT_011362AL121587423338673AFM189YA72057.702058.481 AL121587
S/G/Y/R/B/O NT_011362AL121587423358533AFMA339WD52057.702058.481 AL121587
S/G/Y/R/B/O NT_011362AL034419423685603        
S/G/Y/R/B/O NT_011362AL035447425206683        
S/G/Y/R/B/O NT_011362AL035462425746493        
S/G/Y/R/B/O NT_011362AL117382426248833        
S/G/Y/R/B/O NT_011362AL132772427566233        
S/G/Y/R/B/O NT_011362Z97053429331433AFMA060WG12060.902061.771 Z97053
S/G/Y/R/B/O NT_011362AL139352430692923UT275  2058.481 AL139352
S/G/Y/R/B/O NT_011362AL118522431720203AFM207ZB102061.002061.771 AL118522


  NT_011362 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL008725432020983        
S/G/Y/R/B/O NT_011362AL109839433773343AFM273YH92061.002061.771Z93016, AL109839, Z93016
S/G/Y/R/B/O NT_011362Z93016433906413        
S/G/Y/R/B/O NT_011362AL049767434967493GATA47F05  2062.321 AL049767
S/G/Y/R/B/O NT_011362AL035660436151763GATA148H05  2062.321 AL035660
S/G/Y/R/B/O NT_011362AL035660436246983UT654  2058.481 AL035660
S/G/Y/R/B/O NT_011362AL021578436459563        
S/G/Y/R/B/O NT_011362AL031663437934763        
S/G/Y/R/B/O NT_011362AL121778439204013        
S/G/Y/R/B/O NT_011362AL031671439378993        
S/G/Y/R/B/O NT_011362AL109656440541793        
S/G/Y/R/B/O NT_011362AL050348440875373        
S/G/Y/R/B/O NT_011362AL008726441848223        
S/G/Y/R/B/O NT_011362AL162458443657443AFMA139WF52064.102064.881 AL133554, AL162458, D10051
S/G/Y/R/B/O NT_011362AL162458443812293AFMA240XF12064.102064.881 AL133554, AL162458
S/G/Y/R/B/O NT_011362AL035662444214933        
S/G/Y/R/B/O NT_011362AL031687445166763        
S/G/Y/R/B/O NT_011362AL445286446687253AFMA132XE92064.102064.881 AL445286
S/G/Y/R/B/O NT_011362AL133227446754093        
S/G/Y/R/B/O NT_011362AL031686447738273AFMA339WE92064.102064.881 AL031686
S/G/Y/R/B/O NT_011362AL354745448555923        
S/G/Y/R/B/O NT_011362AL034424449122143AFMB299YD12064.102064.881 AC073619, AL034424
S/G/Y/R/B/O NT_011362AL034424449795603AFMB298WB92065.502066.161 AL034424
S/G/Y/R/B/O NT_011362AL133520449966623        
S/G/Y/R/B/O NT_011362AL031055450438873        
S/G/Y/R/B/O NT_011362AL359506451712053        
S/G/Y/R/B/O NT_011362AL354766451809513        
S/G/Y/R/B/O NT_011362AL121776452920213        
S/G/Y/R/B/O NT_011362AL359434454359023        
S/G/Y/R/B/O NT_011362AL390211454825103        
S/G/Y/R/B/O NT_011362AL049540455173273        
S/G/Y/R/B/O NT_011362AL390212455917763        
S/G/Y/R/B/O NT_011362AL031666456580653AFMB336YE52066.002066.711 AL031666
S/G/Y/R/B/O NT_011362AL109825457264223        
S/G/Y/R/B/O NT_011362AL353777458101613        
S/G/Y/R/B/O NT_011362AL021394458891813AFM326XD52066.002066.161 AL021394
S/G/Y/R/B/O NT_011362AL034418459413613        
S/G/Y/R/B/O NT_011362AL354813460277143        
S/G/Y/R/B/O NT_011362AL121777461207703        
S/G/Y/R/B/O NT_011362Z95330462804043AFM240VD62065.502066.161 Z95330
S/G/Y/R/B/O NT_011362AL357558462963803        
S/G/Y/R/B/O NT_011362AL139351463595073        
S/G/Y/R/B/O NT_011362AL136102464569193        
S/G/Y/R/B/O NT_011362AL133341465349793        
S/G/Y/R/B/O NT_011362AL121888465699123        
S/G/Y/R/B/O NT_011362AL137078467067423        
S/G/Y/R/B/O NT_011362AL049541467873673        
S/G/Y/R/B/O NT_011362AL445192469292673UT1521  2077.751 AL445192
S/G/Y/R/B/O NT_011362AL035106470419193AFM238VH62071.302072.271 AL035106
S/G/Y/R/B/O NT_011362AL035106470918113AFMB017XG52071.302072.271 AL035106


  NT_011362 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL133342471239023        
S/G/Y/R/B/O NT_011362AL049537472420983UT245  2072.271  
S/G/Y/R/B/O NT_011362AL049537472423743UT414  2072.271 AL049537
S/G/Y/R/B/O NT_011362AL121903474016473AFMB298YH52071.202072.271 AL121903
S/G/Y/R/B/O NT_011362AL133174474250443        
S/G/Y/R/B/O NT_011362AL357560475387803        
S/G/Y/R/B/O NT_011362AL049766475678663        
S/G/Y/R/B/O NT_011362AL121786476780593        
S/G/Y/R/B/O NT_011362AL035685476781563        
S/G/Y/R/B/O NT_011362AL118525478333733        
S/G/Y/R/B/O NT_011362AL035683479370203        
S/G/Y/R/B/O NT_011362AL162615480515163        
S/G/Y/R/B/O NT_011362AL031685481915083        
S/G/Y/R/B/O NT_011362AL121712483073433        
S/G/Y/R/B/O NT_011362AL034423483870223        
S/G/Y/R/B/O NT_011362AL161937485005113        
S/G/Y/R/B/O NT_011362AL354889485938103        
S/G/Y/R/B/O NT_011362AL034429487983043AFM165XH22073.602074.471 AL034429
S/G/Y/R/B/O NT_011362AL133230488855283        
S/G/Y/R/B/O NT_011362AL353653490006223AFMC010XA92076.902077.751 AC093594, AL353653
S/G/Y/R/B/O NT_011362AL031680490631543        
S/G/Y/R/B/O NT_011362AL133228491804853        
S/G/Y/R/B/O NT_011362AL034553492850233AFM205TC92074.502075.011 AL034553
S/G/Y/R/B/O NT_011362AL034553492900413AFM321XD12074.502075.011 AL034553
S/G/Y/R/B/O NT_011362AL050404493289033        
S/G/Y/R/B/O NT_011362AL121785493675513        
S/G/Y/R/B/O NT_011362AL121915494447673        
S/G/Y/R/B/O NT_011362AL035457494965263        
S/G/Y/R/B/O NT_011362AL079339496387623        
S/G/Y/R/B/O NT_011362AL035682497253813        
S/G/Y/R/B/O NT_011362AL132866498367073AFMA244YE92076.902077.751 AL132866
S/G/Y/R/B/O NT_011362AL035684498707583        
S/G/Y/R/B/O NT_011362AL138807500472003AFM262VF92076.902077.751 AL138807
S/G/Y/R/B/O NT_011362AL353799500872973        
S/G/Y/R/B/O NT_011362AL034420501223353        
S/G/Y/R/B/O NT_011362AL356354502386033        
S/G/Y/R/B/O NT_011362AL035072502915973AFMA192WB12076.902077.751 AL035072
S/G/Y/R/B/O NT_011362AL109984503629773GAAT1F1  2077.751 AL109984
S/G/Y/R/B/O NT_011362AL121771504872703AFMB344YE52076.902077.751 AL121771
S/G/Y/R/B/O NT_011362AL121923505472173        
S/G/Y/R/B/O NT_011362AL035686506315523UT1747  2077.751 AL035686
S/G/Y/R/B/O NT_011362AL035686506592953UT252  2077.751 AL035686
S/G/Y/R/B/O NT_011362AL109977507501803AFMA153YC92076.902077.751 AL109977
S/G/Y/R/B/O NT_011362AL109610507798183AFMA122XC52076.902077.751 AL109610
S/G/Y/R/B/O NT_011362AL049765508426133AFMB073ZB92076.902078.291 AL049765
S/G/Y/R/B/O NT_011362AL049736509395253        
S/G/Y/R/B/O NT_011362AL031674510125403        
S/G/Y/R/B/O NT_011362AL161945511238133        
S/G/Y/R/B/O NT_011362AL121902512906133GATA86F01  2078.291 AL121902
S/G/Y/R/B/O NT_011362AL050316513646523        


  NT_011362 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL391097514797453AFMC028ZC52077.402078.291 AC004499, AL391097
S/G/Y/R/B/O NT_011362AC004505515856253GATA45B10  2079.911 AC004505
S/G/Y/R/B/O NT_011362AL354772516121543        
S/G/Y/R/B/O NT_011362AL109930516317973AFM211XG92079.002080.631 AF312912, AL109930
S/G/Y/R/B/O NT_011362AL109930517250833AFMA233WG12079.002080.631 AC004504, AC051637, AL109930
S/G/Y/R/B/O NT_011362AL109930517384103AFM248WB92079.002080.631 AC004504
S/G/Y/R/B/O NT_011362AL354993517499973        
S/G/Y/R/B/O NT_011362AL157838518757623AFMA153YF52079.002079.911 AL157838
S/G/Y/R/B/O NT_011362AL157838518969673AFM080YA12079.002079.911 AF312915, AL157838
S/G/Y/R/B/O NT_011362AC005808519431353        
S/G/Y/R/B/O NT_011362AC005914520761093AFMB069WG12079.002080.631 AC005914
S/G/Y/R/B/O NT_011362AC006076521342323        
S/G/Y/R/B/O NT_011362AC004762521630643        
S/G/Y/R/B/O NT_011362AC005220522293553AFMA072ZB92081.102082.071 AC005220
S/G/Y/R/B/O NT_011362AC004501524099083GATA46C01  2082.071 AC004501, AC021963, AF312914
S/G/Y/R/B/O NT_011362AL354801524118423        
S/G/Y/R/B/O NT_011362AL138805524429053        
S/G/Y/R/B/O NT_011362AL133335525223993        
S/G/Y/R/B/O NT_011362AL389883527338893AFM276XH12082.102083.511 AL389883
S/G/Y/R/B/O NT_011362AL121922527386923        
S/G/Y/R/B/O NT_011362AL442131527760663        
S/G/Y/R/B/O NT_011362AL162292527786893        
S/G/Y/R/B/O NT_011362AL118501528789713        
S/G/Y/R/B/O NT_011362AL035667529955353        
S/G/Y/R/B/O NT_011362AL133420531877313ACT1A04  2084.231 AC048356, AL133420
S/G/Y/R/B/O NT_011362AL138809532154453        
S/G/Y/R/B/O NT_011362AL162294533672683GGAA11E12  2084.781 AL162294
S/G/Y/R/B/O NT_011362AL121593533711013        
S/G/Y/R/B/O NT_011362AL158015535942543ATA7B01  2084.781 AL158015, AL513483
S/G/Y/R/B/O NT_011362AL035663536008773AFMA225WE92083.402084.781 AL035663, AL513483
S/G/Y/R/B/O NT_011362AL035663536237713AFMA114YA52084.002085.411 AL035663, AL513483
S/G/Y/R/B/O NT_011362AL161801536995103        
S/G/Y/R/B/O NT_011362AL121826537070363        
S/G/Y/R/B/O NT_011362AL160413538329813        
S/G/Y/R/B/O NT_011362AL356388538896823        
S/G/Y/R/B/O NT_011362AL109829540424813AFM057XA32083.402084.781 AL109829
S/G/Y/R/B/O NT_011362AL109828540557553        
S/G/Y/R/B/O NT_011362AL121591541470053        
S/G/Y/R/B/O NT_011362AL353640542379053        
S/G/Y/R/B/O NT_011362AL117383543002793        
S/G/Y/R/B/O NT_011362AL139824544180333        
S/G/Y/R/B/O NT_011362AL359534546110773        
S/G/Y/R/B/O NT_011362AL121914547198033AFM066XH32085.802086.981 AL121914
S/G/Y/R/B/O NT_011362AL109806547671733        
S/G/Y/R/B/O NT_011362AL137162548611943        
S/G/Y/R/B/O NT_011362AL121920549188533        
S/G/Y/R/B/O NT_011362AL133232550051163        
S/G/Y/R/B/O NT_011362AL161657551001133        
S/G/Y/R/B/O NT_011362AL117380552423593UT488  2086.981 AL117380, AL133212
S/G/Y/R/B/O NT_011362AL117380553174423UT5015  2086.981 AL117380, AL133212


  NT_011362 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011362AL157414553705183        
S/G/Y/R/B/O NT_011362AL122058554951673        
S/G/Y/R/B/O NT_011362AL135939555966403        
S/G/Y/R/B/O NT_011362AL109955556625733        
S/G/Y/R/B/O NT_011362AL160176557709303        
S/G/Y/R/B/O NT_011362AL035541558782313UT2447  2086.981 AL035541
S/G/Y/R/B/O NT_011362AL161943559580773        
S/G/Y/R/B/O NT_011362AL121913559606833        
S/G/Y/R/B/O NT_011362AL162291561108073        
S/G/Y/R/B/O NT_011362AL354984562091063        
S/G/Y/R/B/O NT_011362AL354776564167003        
S/G/Y/R/B/O NT_011362AL354834565628083        
S/G/Y/R/B/O NT_011362AL035455566037403        
S/G/Y/R/B/O NT_011362AL118513567817823UT1772  20101.221 AL118513
S/G/Y/R/B/O NT_011362AL050327568450423        
S/G/Y/R/B/O NT_011362AL139349569683103        
S/G/Y/R/B/O NT_011362AL132655570369533        
S/G/Y/R/B/O NT_011362AL121917571634393        
S/G/Y/R/B/O NT_011362AL109840572238733UT242  2098.091 AC010102
S/G/Y/R/B/O NT_011362AL136532573481403        
S/G/Y/R/B/O NT_011362AL121919575363053AFM046XF62094.402095.701 AC011892, AL121919, AL135915, AL136118
S/G/Y/R/B/O NT_011362AL035250575722693        
S/G/Y/R/B/O NT_011362AL160410576774943        
S/G/Y/R/B/O NT_011362AL389889577404843        
S/G/Y/R/B/O NT_011362AL121908578787313        
S/G/Y/R/B/O NT_011362AL357503580296163        
S/G/Y/R/B/O NT_011362AL158092581628043        
S/G/Y/R/B/O NT_011362AL109928582080773        
S/G/Y/R/B/O NT_011362AL353677583482343        
S/G/Y/R/B/O NT_011362AL132822583523463        
S/G/Y/R/B/O NT_011362AL035070586063693AFM218XE72096.502098.091 AC021670, AL035070
S/G/Y/R/B/O NT_011362AL121918586276853        
S/G/Y/R/B/O NT_011362AL136143587413393        
S/G/Y/R/B/O NT_011362AL358237588283963        
S/G/Y/R/B/O NT_011362AL161940588761463        
S/G/Y/R/B/O NT_011362AL117372589742673        
S/G/Y/R/B/O NT_011362AL139348591070263        
S/G/Y/R/B/O NT_011362AL050326591755573        
S/G/Y/R/B/O NT_011362AL121910592535123        
S/G/Y/R/B/O NT_011362AL121887593953073        
S/G/Y/R/B/O NT_011362AL365229595086803        
S/G/Y/R/B/O NT_011362AL450463596300583        
S/G/Y/R/B/O NT_011362 - GATA124A11  2054.090 AL355363
S/G/Y/R/B/O NT_011362 - UT1307  2069.501 AC012551
S/G/Y/R/B/O NT_011362 - UT8178  2077.750