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  Chromosome 20 - Genetic Maps - Single Contig
 

Chromosome 20 - Genetic Maps - Single Contig

Description of this page Main Reports Page Main Assembly Page Main Map Page Whole Chromosome Single Contigs

Line color code:

  • White: no markers placed on this accession
  • Blue: marker placement on STS map consistent with alignment of assembly contigs
  • Green: marker placement on STS map slightly inconsistent with alignment of assembly contigs
  • Pink: marker placement on STS map inconsistent with alignment of assembly contigs, but marker placed on same chromosome in STS map
  • Red: marker placed on different chromosome in STS map
  • Yellow: marker not placed on accession used in assembly, but alignment of assembly contigs indicates it falls within this contig
NT_011387 NT_025215 NT_028392 NT_011362 NT_030871 NT_011333


  NT_011387
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL36007870810320PTEL04  200.001 AC011857, AL360078, AL365339
S/G/Y/R/B/O NT_011387AL360078119565320PTEL18  200.001 AC011857, AL360078, AL365339
S/G/Y/R/B/O NT_011387AL3600781862673AFMA343XC9200.00200.001 AC011857, AL360078
S/G/Y/R/B/O NT_011387AL034548216155320PEND  200.001 AC011857, AL034548, AL365339
S/G/Y/R/B/O NT_011387AL1217473671943        
S/G/Y/R/B/O NT_011387AL0497614256213        
S/G/Y/R/B/O NT_011387AL1332315473023AFM077XD3202.90202.131 AL133231
S/G/Y/R/B/O NT_011387AL1217586409193AFM123XH12202.90202.831 AL121758
S/G/Y/R/B/O NT_011387AL1217586431483AFM248YC5202.90202.831 AL121758
S/G/Y/R/B/O NT_011387AL1185026993633        
S/G/Y/R/B/O NT_011387AL1619398255213        
S/G/Y/R/B/O NT_011387AL0503258639983        
S/G/Y/R/B/O NT_011387AL11011410032283        
S/G/Y/R/B/O NT_011387AL03166510820443AFMA131WF1206.20206.251 AL031665
S/G/Y/R/B/O NT_011387AL13653112268293        
S/G/Y/R/B/O NT_011387AL10965813458013        
S/G/Y/R/B/O NT_011387AL04963414936233AFM338TD9207.50207.611 AL049634, AL441924
S/G/Y/R/B/O NT_011387AL59254415720503        
S/G/Y/R/B/O NT_011387AL13880415843923        
S/G/Y/R/B/O NT_011387AL10980916203643        
S/G/Y/R/B/O NT_011387AL12176017526603        
S/G/Y/R/B/O NT_011387AL11733518444973        
S/G/Y/R/B/O NT_011387AL03456219651903AFM240WB8202.902011.201 AL034562
S/G/Y/R/B/O NT_011387AL35991620235443AFM205TH8207.50208.971 AL359916
S/G/Y/R/B/O NT_011387AL12189921187173        
S/G/Y/R/B/O NT_011387AL03167822576543        
S/G/Y/R/B/O NT_011387AL04965023734113        
S/G/Y/R/B/O NT_011387AL13333924635273        
S/G/Y/R/B/O NT_011387AL04971226296353AFM333XE5208.80208.971 AL049712
S/G/Y/R/B/O NT_011387AL13334526406523        
S/G/Y/R/B/O NT_011387AL03546026742603AFMA175VB1208.80208.971 AL035460
S/G/Y/R/B/O NT_011387AL16165627881133        
S/G/Y/R/B/O NT_011387AL12190528913833        
S/G/Y/R/B/O NT_011387AL16041430179623        
S/G/Y/R/B/O NT_011387AL12189131605683AFM240ZF4209.30209.531 AL121891
S/G/Y/R/B/O NT_011387AL10997631794543        
S/G/Y/R/B/O NT_011387AL11733433013843AFM308WE1209.40209.531 AL117334
S/G/Y/R/B/O NT_011387AL35319333912963        
S/G/Y/R/B/O NT_011387AL10980534534923ATA21E04  209.531 AC023420, AL109805
S/G/Y/R/B/O NT_011387AL13277335161333        
S/G/Y/R/B/O NT_011387AL35675536209403        
S/G/Y/R/B/O NT_011387AL10980436647743AFMB026XH52011.002012.121 AC017113, AC068569
S/G/Y/R/B/O NT_011387AL35319438299393        
S/G/Y/R/B/O NT_011387AL03167039350093AFM234TF102011.002011.201 AL031670
S/G/Y/R/B/O NT_011387AL35641440412473AFM248TD12011.002011.201 AL356414
S/G/Y/R/B/O NT_011387AL12167540890123        
S/G/Y/R/B/O NT_011387AL35704042020803        
S/G/Y/R/B/O NT_011387AL13935042247973        
S/G/Y/R/B/O NT_011387AL12178144943593GATA149E11  2012.121 AL121781
S/G/Y/R/B/O NT_011387AL12191645122093AFM036YA32011.002012.121 AL121916


  NT_011387 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL12191645188233UT235  2013.981 AL121916
S/G/Y/R/B/O NT_011387AL13339645984113        
S/G/Y/R/B/O NT_011387AL13335447468083        
S/G/Y/R/B/O NT_011387AL44507548064303        
S/G/Y/R/B/O NT_011387AL38988648123033        
S/G/Y/R/B/O NT_011387AL10984149300273        
S/G/Y/R/B/O NT_011387AL12189050746793AFMB352XD92013.702013.981 AC016073, AL121890
S/G/Y/R/B/O NT_011387AL12192450764403        
S/G/Y/R/B/O NT_011387AL12175551820903AFMA217ZH92013.702013.981 AC016073, AL121755
S/G/Y/R/B/O NT_011387AL12175753029143AFMA130YA92014.802015.051 AL121757
S/G/Y/R/B/O NT_011387AL10993555848033AFMB058XA92014.802015.051 AL109935
S/G/Y/R/B/O NT_011387AL10993556231543AFMB290WH52014.802015.051 AC037451, AL109935
S/G/Y/R/B/O NT_011387AL11737757043063AFM023TA12016.402016.651 AC037451, AL117377
S/G/Y/R/B/O NT_011387AL03524957126883        
S/G/Y/R/B/O NT_011387AL39002858501103AFMA085ZH92016.902017.191 AC027092, AL390028
S/G/Y/R/B/O NT_011387AL39002858516663AFM303ZD52016.902017.191 AC027092
S/G/Y/R/B/O NT_011387AL03546158755413        
S/G/Y/R/B/O NT_011387AL11850560147933        
S/G/Y/R/B/O NT_011387AL35995461307523AFM317TE52018.002018.262AL390737, AL359954, AL390727, AL390737, AL390761
S/G/Y/R/B/O NT_011387AL10961861751533        
S/G/Y/R/B/O NT_011387AL15809362788723        
S/G/Y/R/B/O NT_011387AL16250463914463        
S/G/Y/R/B/O NT_011387AL12191164971033        
S/G/Y/R/B/O NT_011387AL03566866850643AFM299XD12018.502018.791 AC026511
S/G/Y/R/B/O NT_011387AL03566866890503UT970  2017.741 AL035668
S/G/Y/R/B/O NT_011387AL03566867381303AFMB344XB12018.502018.791 AC026511, AF040249, AL035668
S/G/Y/R/B/O NT_011387AL03566867529893AFMA196WF52018.502018.791 AC026511
S/G/Y/R/B/O NT_011387AL10985667900013        
S/G/Y/R/B/O NT_011387AL03455468096473        
S/G/Y/R/B/O NT_011387AL16165569472813        
S/G/Y/R/B/O NT_011387AL09679970523723        
S/G/Y/R/B/O NT_011387AL08024871505803UT250  2018.791 AL080248
S/G/Y/R/B/O NT_011387AL07864373141313GATA72E11  2021.151 AL078643
S/G/Y/R/B/O NT_011387AL07864373496393AFMC017ZE12020.902021.151 AL078643
S/G/Y/R/B/O NT_011387AL09679273879553        
S/G/Y/R/B/O NT_011387AL09676974891933        
S/G/Y/R/B/O NT_011387AL03165376479233AFM218YG32020.902021.151 AL031653
S/G/Y/R/B/O NT_011387AL03167977089283        
S/G/Y/R/B/O NT_011387AL02187978281203        
S/G/Y/R/B/O NT_011387AL03566479265893        
S/G/Y/R/B/O NT_011387AL02139680452843AFM345TD12020.902021.151 AL021396
S/G/Y/R/B/O NT_011387AL05032380681323        
S/G/Y/R/B/O NT_011387AL02140681192763        
S/G/Y/R/B/O NT_011387AL12158982385923        
S/G/Y/R/B/O NT_011387AL03455182543543        
S/G/Y/R/B/O NT_011387AL36521283919773        
S/G/Y/R/B/O NT_011387AL05031984045303        
S/G/Y/R/B/O NT_011387AL03165585529143AFMB281YF12025.002023.811 AL031655
S/G/Y/R/B/O NT_011387AL04963285846733        
S/G/Y/R/B/O NT_011387AL05031586357233        


  NT_011387 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL03168387830643AFM238ZC112026.902024.701 AL031683
S/G/Y/R/B/O NT_011387AL04959388498653AFMA218YB52023.802024.701 AL031132, AL049593
S/G/Y/R/B/O NT_011387AL44556788871013        
S/G/Y/R/B/O NT_011387AL12189889384483        
S/G/Y/R/B/O NT_011387AL12190991831403AFM234ZB122025.902024.701 AL121909
S/G/Y/R/B/O NT_011387AL02380592761093AFMA086WE92025.002024.701 AL023805
S/G/Y/R/B/O NT_011387AL03165293755373        
S/G/Y/R/B/O NT_011387AL35361295240783        
S/G/Y/R/B/O NT_011387AL13593595778423        
S/G/Y/R/B/O NT_011387AL03168296323913        
S/G/Y/R/B/O NT_011387AL03442797885943        
S/G/Y/R/B/O NT_011387AL35373998451253        
S/G/Y/R/B/O NT_011387AL109754100249753UT1689  2024.701 AL109754
S/G/Y/R/B/O NT_011387AL109754100294563AFMC020VE92026.902026.131 AL109754
S/G/Y/R/B/O NT_011387AL354824101113233        
S/G/Y/R/B/O NT_011387AL023913101951743        
S/G/Y/R/B/O NT_011387AL034430103353803        
S/G/Y/R/B/O NT_011387AL353599104100973        
S/G/Y/R/B/O NT_011387AL133340104867973UT2012  2027.661 AL133340
S/G/Y/R/B/O NT_011387AL035456106879363AFMB348YB52030.602030.561 AL035456
S/G/Y/R/B/O NT_011387AL135937107030993        
S/G/Y/R/B/O NT_011387AL050403107622303        
S/G/Y/R/B/O NT_011387AL158042109070543        
S/G/Y/R/B/O NT_011387AL050322110297293AFM288ZF52030.602029.091 AL050322
S/G/Y/R/B/O NT_011387AL078588111618633AFM292XB52032.402030.561 AL078588
S/G/Y/R/B/O NT_011387AL049649111671043        
S/G/Y/R/B/O NT_011387AL049690113026403        
S/G/Y/R/B/O NT_011387AL079337114198893        
S/G/Y/R/B/O NT_011387AL109837115118513AFM120XC72033.202032.301 AL109837
S/G/Y/R/B/O NT_011387AL161938115962253        
S/G/Y/R/B/O NT_011387AL445667117341873        
S/G/Y/R/B/O NT_011387AL080274117779643        
S/G/Y/R/B/O NT_011387AL035448119527413UT246  2032.301 AL035448
S/G/Y/R/B/O NT_011387AL035448119863123D20S61  2032.301 AL035448
S/G/Y/R/B/O NT_011387AL034547120194773        
S/G/Y/R/B/O NT_011387AL109838121337733        
S/G/Y/R/B/O NT_011387AL136460122549043        
S/G/Y/R/B/O NT_011387AL096862123938343        
S/G/Y/R/B/O NT_011387AL034561125723453GATA81E09  2032.942AC018937, AC018937, AL034561
S/G/Y/R/B/O NT_011387AL138850126329733        
S/G/Y/R/B/O NT_011387AL354804126906713        
S/G/Y/R/B/O NT_011387AL078623128461613UT1705  2031.431 AL078623
S/G/Y/R/B/O NT_011387AL133331129064173        
S/G/Y/R/B/O NT_011387AL445589129914273        
S/G/Y/R/B/O NT_011387AL109983130276193        
S/G/Y/R/B/O NT_011387AL050320131324323        
S/G/Y/R/B/O NT_011387AL133463132393893        
S/G/Y/R/B/O NT_011387AL121782134357803AFMA081TH92035.102034.221 AL121782
S/G/Y/R/B/O NT_011387AL158089134680923        
S/G/Y/R/B/O NT_011387AL121754135889033AFM211YB82035.102035.511 AL121754


  NT_011387 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL161659136584643        
S/G/Y/R/B/O NT_011387AL109657137601533        
S/G/Y/R/B/O NT_011387AL354683138603253        
S/G/Y/R/B/O NT_011387AL117333138721073        
S/G/Y/R/B/O NT_011387AL353798140288203        
S/G/Y/R/B/O NT_011387AL136992140643713        
S/G/Y/R/B/O NT_011387AL132826142279603        
S/G/Y/R/B/O NT_011387AL355133143515553        
S/G/Y/R/B/O NT_011387AL121582143937583        
S/G/Y/R/B/O NT_011387AL139825145645663        
S/G/Y/R/B/O NT_011387AL354773146019923        
S/G/Y/R/B/O NT_011387AL118510147194013        
S/G/Y/R/B/O NT_011387AL161800148435153        
S/G/Y/R/B/O NT_011387AL138808148871563        
S/G/Y/R/B/O NT_011387AL031677149765433        
S/G/Y/R/B/O NT_011387AL133462151371093AFMA055YG52035.802035.511 AL133462
S/G/Y/R/B/O NT_011387AL049633152573313UT759  2035.511 AC007630, AC008057
S/G/Y/R/B/O NT_011387AL049867152642673AFMC013XE52035.802035.511 AC007630, AL049867
S/G/Y/R/B/O NT_011387AL049867152860503GATA129B03  2035.511 AC007630, AC008057, AL049867
S/G/Y/R/B/O NT_011387AL158088153556003        
S/G/Y/R/B/O NT_011387AL121584154156273AFMA224XF12036.802036.581 AL121584
S/G/Y/R/B/O NT_011387AL050324156409313AFM044XB42036.802037.651 AC007449
S/G/Y/R/B/O NT_011387AL118503156427573        
S/G/Y/R/B/O NT_011387AL035073157133623AFM291WE52037.602037.651 AL035073
S/G/Y/R/B/O NT_011387AC006198157714183        
S/G/Y/R/B/O NT_011387AL079338158116173        
S/G/Y/R/B/O NT_011387AL357654159340833        
S/G/Y/R/B/O NT_011387AL136991159566343        
S/G/Y/R/B/O NT_011387AL357504161258763        
S/G/Y/R/B/O NT_011387AL161941161751203AFM102XA72037.602037.651 AL161941
S/G/Y/R/B/O NT_011387AL117376162104163        
S/G/Y/R/B/O NT_011387AL118509163725293        
S/G/Y/R/B/O NT_011387AL049794164539163        
S/G/Y/R/B/O NT_011387AL355579166101503GATA142C02  2038.721 AL355579
S/G/Y/R/B/O NT_011387AL135938166402633AFMB067XG12038.402038.721 AL135938
S/G/Y/R/B/O NT_011387AL034428167431743UT251  2039.251 AL034428
S/G/Y/R/B/O NT_011387AL121892167963783        
S/G/Y/R/B/O NT_011387AL121592168740163        
S/G/Y/R/B/O NT_011387AL031684170173813AFM260XG52039.302039.251 AL031684
S/G/Y/R/B/O NT_011387AL135940170485243        
S/G/Y/R/B/O NT_011387AL359511171543883        
S/G/Y/R/B/O NT_011387AL031675172449743AFM210VB42039.302039.251 AL031675
S/G/Y/R/B/O NT_011387AL031675173039943AFM197XB122039.302039.251 AL031675
S/G/Y/R/B/O NT_011387AL121779173605263GGAA7E02  2039.251 AC010083, AL121779
S/G/Y/R/B/O NT_011387AL031664173674163        
S/G/Y/R/B/O NT_011387AL132765175224493        
S/G/Y/R/B/O NT_011387AL160071177147993GATA83F12  2039.901 AL160071
S/G/Y/R/B/O NT_011387AL035045178273403AFM242YF82039.902039.901 AC022242
S/G/Y/R/B/O NT_011387AL121585179517353AFMB296XC92039.902039.901 AL121585
S/G/Y/R/B/O NT_011387AL160411180019183        


  NT_011387 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL050321181058563ATA4B02  2039.251 AL050321
S/G/Y/R/B/O NT_011387AL389897182042413        
S/G/Y/R/B/O NT_011387AL049646183221873AFMA337ZH92040.602040.551 AL049646
S/G/Y/R/B/O NT_011387AL158176183676133        
S/G/Y/R/B/O NT_011387AL121893183782703        
S/G/Y/R/B/O NT_011387AL121900185293023        
S/G/Y/R/B/O NT_011387AL121780186791403        
S/G/Y/R/B/O NT_011387AL035563187477893        
S/G/Y/R/B/O NT_011387AL135936188958663        
S/G/Y/R/B/O NT_011387AL136090190121073        
S/G/Y/R/B/O NT_011387AL049647191974803        
S/G/Y/R/B/O NT_011387AL139827193622253        
S/G/Y/R/B/O NT_011387AL034425193785633        
S/G/Y/R/B/O NT_011387AL139429194951913        
S/G/Y/R/B/O NT_011387AL121830195851433        
S/G/Y/R/B/O NT_011387AL121761196724373        
S/G/Y/R/B/O NT_011387AL132821198194313GGAA9H11  2042.281 AL132821
S/G/Y/R/B/O NT_011387AL049538198913033        
S/G/Y/R/B/O NT_011387AL035454199874813        
S/G/Y/R/B/O NT_011387AL049648200991453        
S/G/Y/R/B/O NT_011387AL121721202251753        
S/G/Y/R/B/O NT_011387AL158849202801893        
S/G/Y/R/B/O NT_011387AL161658203022453        
S/G/Y/R/B/O NT_011387AL121896203695013        
S/G/Y/R/B/O NT_011387AL078634205379463        
S/G/Y/R/B/O NT_011387AL157718206740143        
S/G/Y/R/B/O NT_011387AL109953208488683AFMA070XG52046.102046.711 AL109953
S/G/Y/R/B/O NT_011387AL133465209320263D20S54  2045.771 AL133465
S/G/Y/R/B/O NT_011387AL121759209948473        
S/G/Y/R/B/O NT_011387AL110120211527193        
S/G/Y/R/B/O NT_011387AL117332212984633AFM294VB52047.002047.521 AL117332
S/G/Y/R/B/O NT_011387AL158013213222083        
S/G/Y/R/B/O NT_011387AL133325213732373        
S/G/Y/R/B/O NT_011387AL121590216003153GATA137B10  2046.711 AL121590
S/G/Y/R/B/O NT_011387AL035562216653063AFMB027ZB92046.102047.091 AL035562
S/G/Y/R/B/O NT_011387AL121921217351163        
S/G/Y/R/B/O NT_011387AL117375217942253        
S/G/Y/R/B/O NT_011387AL109807219089813        
S/G/Y/R/B/O NT_011387AL157412220228883        
S/G/Y/R/B/O NT_011387AL035258221143043AFM240WG12047.002047.521 AL035258
S/G/Y/R/B/O NT_011387AL035258221274723ATA20C01  2047.521 AL035258
S/G/Y/R/B/O NT_011387AL049737222012143        
S/G/Y/R/B/O NT_011387AL356733222604263        
S/G/Y/R/B/O NT_011387AL121912222607893        
S/G/Y/R/B/O NT_011387AL133464223784463        
S/G/Y/R/B/O NT_011387AL445603224314963        
S/G/Y/R/B/O NT_011387AL356742224414263        
S/G/Y/R/B/O NT_011387AL121722225169143        
S/G/Y/R/B/O NT_011387AL158175226376833        
S/G/Y/R/B/O NT_011387AL049738227236073        


  NT_011387 (cont)
 
LinksContigAccessionChr StartPhsSTS MarkerGen ChrGenethonMarsh ChrMarshfieldPlcOther Accessions in AssemblyAll Accessions
S/G/Y/R/B/O NT_011387AL353132228458893        
S/G/Y/R/B/O NT_011387AL049651229397543        
S/G/Y/R/B/O NT_011387AL118508231124003AFM248XB92048.102048.611 AL118508
S/G/Y/R/B/O NT_011387AL357508231612983        
S/G/Y/R/B/O NT_011387AL390037232341503        
S/G/Y/R/B/O NT_011387AL096677233236253AFMB038YA92048.102048.611 AL096677
S/G/Y/R/B/O NT_011387AL109954234256613        
S/G/Y/R/B/O NT_011387AL121894235932183UT487  2049.711 AL121894
S/G/Y/R/B/O NT_011387AL121894236271903AFM058XA12048.102048.611 AL121894
S/G/Y/R/B/O NT_011387AL359433236402033        
S/G/Y/R/B/O NT_011387AL591074236785283        
S/G/Y/R/B/O NT_011387AL359967238814043        
S/G/Y/R/B/O NT_011387AL121831238851393        
S/G/Y/R/B/O NT_011387AL133466239240563        
S/G/Y/R/B/O NT_011387AL110503240418463        
S/G/Y/R/B/O NT_011387AL109830242032713        
S/G/Y/R/B/O NT_011387AL158090242649433        
S/G/Y/R/B/O NT_011387AL034426243218113AFMA210WH92049.202049.711 AL034426
S/G/Y/R/B/O NT_011387AL034426244363543AFMA191XC12049.202049.711 AL034426
S/G/Y/R/B/O NT_011387AL157413244484793        
S/G/Y/R/B/O NT_011387AL049594246231903GGAA22C02  2049.221 AL049594
S/G/Y/R/B/O NT_011387AL121925247382773        
S/G/Y/R/B/O NT_011387AL353582247774373        
S/G/Y/R/B/O NT_011387AL035661248928883        
S/G/Y/R/B/O NT_011387AL080312250847523MFD134A  2048.851 AL080312
S/G/Y/R/B/O NT_011387AL035252250910293        
S/G/Y/R/B/O NT_011387AL121772251994163        
S/G/Y/R/B/O NT_011387AL353812252748153        
S/G/Y/R/B/O NT_011387AL031672254044093        
S/G/Y/R/B/O NT_011387AL161802255053673        
S/G/Y/R/B/O NT_011387AL031673255623823        
S/G/Y/R/B/O NT_011387AL390198256901493        
S/G/Y/R/B/O NT_011387AL078587258652073UT563  140.003AC064862, AC067951, AC099800, AC064862, AC067951, AC099800, AL078587
S/G/Y/R/B/O NT_011387AL450124259821553        
S/G/Y/R/B/O NT_011387AL391119260462573        
S/G/Y/R/B/O NT_011387AL121904261549663AFM294ZC52050.702050.262 AC074122, AL121904
S/G/Y/R/B/O NT_011387AL358116262219063        
S/G/Y/R/B/O NT_011387 - MFD25  2032.301AC073344, AC093592, AC073344, AC093592
S/G/Y/R/B/O NT_011387 - MFD136A  2034.221AL009179, AL009179, NG_000009
S/G/Y/R/B/O NT_011387 - GATA134B10  2047.520